bioRxiv directory

Moura Silva, H.; Bafica, A.; Rodrigues-Luiz, G. F.; Chi, J.; Santos, P. d. A.; Sgarbi Reis, B.; Hoytema van Konijnenburg, D.; Crane, A.; Arifa, R. D. N.; Martin, P.; Gasparin Bueno Mendes, D. A.; Mansur, D. S.; Torres, V.; Cadwell, K.; Cohen, P.; Mucida, D.; Lafaille, J. J.

10.1101/336032 — immunology — Posted on 2018-05-31

10 Force localization modes in dynamic epithelial colonies

Schaumann, E. N.; Staddon, M. F.; Gardel, M. L.; Banerjee, S.

10.1101/336164 — biophysics — Posted on 2018-05-31

11 Longitudinal increase in sleep problems is related to amyloid deposition in cortical regions with high HOMER1 gene expression

Fjell, A.; Sederevicius, D.; Sneve, M. H.; de Lange, A.-M. G.; Braathen, A. C. S.; Walhovd, K. B.

10.1101/335612 — neuroscience — Posted on 2018-05-31

12 The Unreasonable Effectiveness of Convolutional Neural Networks in Population Genetic Inference

Flagel, L.; Brandvain, Y. J.; Schrider, D. R.

10.1101/336073 — evolutionary biology — Posted on 2018-05-31

13 Leveraging pathogen community distributions to understand outbreak and emergence potential

Dallas, T. A.; Carlson, C. J.; Poisot, T.

10.1101/336065 — epidemiology — Posted on 2018-05-31

14 Binary transcriptional control of pattern formation in development

Lammers, N. C.; Galstyan, V.; Reimer, A.; Medin, S. A.; Wiggins, C. H.; Garcia, H. G.

10.1101/335919 — developmental biology — Posted on 2018-05-31

15 The cargo receptor SURF4 promotes the efficient cellular secretion of PCSK9

Emmer, B. T.; Hesketh, G. G.; Kotnik, E.; Tang, V. T.; Lascuna, P. J.; Xiang, J.; Gingras, A.-C.; Chen, X.-W.; Ginsburg, D.

10.1101/336016 — cell biology — Posted on 2018-05-31

16 Thermostabilization and purification of the human dopamine transporter (hDAT) in an inhibitor and allosteric ligand bound conformation

Navratna, V.; Tosh, D. K.; Jacobson, K. A.; Gouaux, E.

10.1101/335968 — biochemistry — Posted on 2018-05-31

17 Anti-diuretic activity of a CAPA neuropeptide can compromise Drosophila chill tolerance

MacMillan, H. A.; Nazal, B.; Wali, S.; Yerushalmi, G. Y.; Misyura, L.; Donini, A.; Paluzzi, J.-P. V.

10.1101/336057 — physiology — Posted on 2018-05-31

18 Thalamus, subiculum and retrosplenial cortex encode 3D head direction information in volumetric space

Kim, M.; Maguire, E. A.

10.1101/335976 — neuroscience — Posted on 2018-05-31

19 A Meta-Analysis of Executive Functions in Frontal Cortex: Comparing Healthy and Neuropsychiatric Groups

Waters, A. B.; Swenson, L. P.; Gansler, D. A.

10.1101/335109 — neuroscience — Posted on 2018-05-31

20 Genetic architecture of gene expression traits across diverse populations

Mogil, L. S.; Andaleon, A.; Badalamenti, A.; Dickinson, S. P.; Guo, X.; Rotter, J. I.; Johnson, W. C.; Im, H. K.; Liu, Y.; Wheeler, H. E.

10.1101/245761 — genomics — Posted on 2018-05-31

21 Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses

Benayoun, B. A.; Pollina, E.; Singh, P. P.; Mahmoudi, S.; Harel, I.; Casey, K.; Dulken, B.; Kundaje, A.; Brunet, A.

10.1101/336172 — genomics — Posted on 2018-05-31

22 Identification of previously untypable RD cell line isolates and detection of EV-A71 genotype C1 in a child with AFP in Nigeria.

Adewumi, M. O.; FALEYE, T. O. C.; OKEOWO, C. O.; OLADAPO, A. M.; OYATHELEMHI, J.; OLANIYI, O. A.; ISOLA, O. C.; ADENIJI, J. A.

10.1101/334094 — epidemiology — Posted on 2018-05-31

23 PCSK9 genetic variants, life-long lowering of LDL-cholesterol and cognition: a large-scale Mendelian randomization study

Lyall, D.; Ward, J.; Banach, M.; Davey Smith, G.; Gill, J.; Pell, J.; Holmes, M.; Sattar, N.

10.1101/335877 — epidemiology — Posted on 2018-05-31

24 Diurnal Chorusing in Nine Species of North American Frogs

McCallum, M. l.; McCallum, J. L.

10.1101/336149 — ecology — Posted on 2018-05-31

25 Towards an Ecological Trait-data Standard

Schneider, F. D.; Jochum, M.; Le Provost, G.; Ostrowski, A.; Penone, C.; Fichtmüller, D.; Güntsch, A.; Gossner, M. M.; König-Ries, B.; Manning, P.; Simons, N. K.

10.1101/328302 — ecology — Posted on 2018-05-31

26 TET2 binding to enhancers facilitates transcription factor recruitment in hematopoietic cells

Rasmussen, K.; Berest, I.; Kessler, S.; Nishimura, K.; Simon-Carrasco, L.; Vassilou, G. S.; Pedersen, M. T.; Christensen, J.; Zaugg, J.; Helin, K.

10.1101/336008 — cancer biology — Posted on 2018-05-31

27 Regulation of neural stem cell fate by the transcriptional repressor Capicua

Ahmad, S. T.; Rogers, A. D.; Chen, M. J.; Dixit, R.; Adnani, L.; Frankiw, L.; Lawn, S. O.; Blough, M. D.; Alshehri, M.; Wu, W.; Robbins, S. M.; Cairncross, G.; Schuurmans, C.; Chan, J.

10.1101/335984 — cancer biology — Posted on 2018-05-31

28 Stress-induced alterations of norepinephrine release in the bed nucleus of the stria terminalis of mice

Schmidt, K. T.; Makhijani, V. H.; Boyt, K. M.; Pati, D.; Pina, M. M.; Bravo, I. M.; Locke, J. L.; Jones, S. R.; Besheer, J.; McElligott, Z. A.

10.1101/335653 — neuroscience — Posted on 2018-05-31

29 Serotonin inhibits axonal regeneration of identifiable descending neurons after a complete spinal cord injury in lampreys

Sobrido-Camean, D.; Robledo, D.; Sanchez, L.; Rodicio, M. C.; Barreiro-Iglesias, A.

10.1101/335844 — neuroscience — Posted on 2018-05-31

30 Integrated Cognitive Assessment: Speed and Accuracy of Visual Processing as a Reliable Proxy to Cognitive Performance

Khaligh-Razavi, S.-M.; Habibi, S.; Sadeghi, M.; Marefat, H.; Khanbagi, M.; Nabavi, S. M.; Sadeghi, E.; Kalafatis, C.

10.1101/335463 — neuroscience — Posted on 2018-05-31

31 Energy conservation via hydrogen cycling in the methanogenic archaeon Methanosarcina barkeri

Kulkarni, G.; Mand, T. D.; Metcalf, W. W.

10.1101/335794 — microbiology — Posted on 2018-05-31

32 The ecology of the Chloroflexi in full-scale activated sludge wastewater treatment plants

Nierychlo, M.; Miłobedzka, A.; Petriglieri, F.; McIlroy, B.; Nielsen, P. H.; McIlroy, S. J.

10.1101/335752 — microbiology — Posted on 2018-05-31

33 Statin use and breast cancer survival: A Swedish nationwide study

Borgquist, S.; Broberg, P.; Tojjar, J.; Olsson, H.

10.1101/335034 — epidemiology — Posted on 2018-05-31

34 Complex associations of environmental factors may explain Blanchard’s Cricket Frog, Acris blanchardi, declines and drive population recovery

McCallum, M. l.; Trauth, S. E.

10.1101/272161 — ecology — Posted on 2018-05-31

35 Comparison of large-scale citizen science data and long-term study data for phenology modeling

Taylor, S. D.; Meiners, J. M.; Riemer, K.; Orr, M. C.; White, E. P.

10.1101/335802 — ecology — Posted on 2018-05-31

36 Kinetic sculpting of the seven stripes of the Drosophila even-skipped gene

Berrocal, A.; Lammers, N. C.; Garcia, H. G.; Eisen, M. B.

10.1101/335901 — developmental biology — Posted on 2018-05-31

37 Genome-Wide Identification of HES1 Target Genes Uncover Novel Roles for HES1 in Pancreatic Development

de Lichtenberg, K. H.; Funa, N. S.; Nakic, N.; Ferrer, J.; Zhu, Z.; Huangfu, D.; Serup, P.

10.1101/335869 — developmental biology — Posted on 2018-05-31

38 Available energy fluxes drive a phase transition in the diversity, stability, and functional structure of microbial communities

Marsland, R.; Cui, W.; Goldford, J. E.; Sanchez, A.; Korolev, K.; Mehta, P.

10.1101/335893 — biophysics — Posted on 2018-05-31

39 Continuous embeddings of DNA sequencing reads, and application to metagenomics

Menegaux, R.; Vert, J.-P.

10.1101/335943 — bioinformatics — Posted on 2018-05-31

40 In-Search Selection of Monoisotopic Peaks Improves the Identification of Cross-Linked Peptides

Lenz, S.; Giese, S. H.; Fischer, L.; Rappsilber, J.

10.1101/335851 — bioinformatics — Posted on 2018-05-31

41 The power of language: functional brain network topology of deaf and hearing in relation to sign language experience

Sinke, M. R. T.; Buitenhuis, J. W.; van der Maas, F.; Nwiboko, J.; Dijkhuizen, R. M.; van Diessen, E.; Otte, W.

10.1101/335414 — neuroscience — Posted on 2018-05-31

42 Cerebellar contribution to preparatory activity in motor neocortex

Chabrol, F. p.; Blot, A.; Mrsic-Flogel, T. D.

10.1101/335703 — neuroscience — Posted on 2018-05-31

43 Peptide length distribution and multiple specificity in naturally presented HLA-I ligands

Gfeller, D.; Guillaume, P.; Michaux, J.; Pak, H.-S.; Daniel, R. T.; Racle, J.; Coukos, G.; Bassani-Sternberg, M.

10.1101/335661 — immunology — Posted on 2018-05-31

44 The scent of symbiosis: gut bacteria affect social interactions in leafcutting ants

Teseo, S.; van Zweden, J.; Pontieri, L.; Kooij, P.; Sorensen, S. J.; Wenseleers, T.; Poulsen, M.; Boomsma, J. J.; Sapountzis, P.

10.1101/335521 — evolutionary biology — Posted on 2018-05-31

45 cytometree: a binary tree algorithm for automatic gating in cytometry analysis

Commenges, D.; Alkhassim, C.; Gottardo, R.; Hejblum, B.; Thiebaut, R.

10.1101/335554 — bioinformatics — Posted on 2018-05-31

46 Spatial transcriptomics and in silico random pooling identify novel dopamine neuron subtype markers

Aguila, J.; Cheng, S.; Kee, N.; Cao, M.; Deng, Q.; Hedlund, E.

10.1101/334417 — neuroscience — Posted on 2018-05-31

47 Human and Rodent Temporal Lobe Epilepsy is Characterized by Changes in O-GlcNAc Homeostasis that can be Reversed to Dampen Epileptiform Activity

Sanchez, R. G.; Parrish, R. R.; Rich, M. C.; Webb, W. M.; Lockhart, R. M.; Nakao, K.; Ianov, L.; Buckingham, S. C.; Cunningham, M.; Broadwater, D. R.; Jenkins, A.; De Lanerolle, N. C.; Eid, T.; Riley, K.; Lubin, F. D.

10.1101/330738 — neuroscience — Posted on 2018-05-31

48 CRISPR-Cas9 interrogation of a putative fetal globin repressor in human erythroid cells.

Chung, J. E.; Magis, W.; Vu, J.; Heo, S.-J.; Wartiovaara, K.; Walters, M. C.; Kurita, R.; Nakamura, Y.; Boffelli, D.; Martin, D. I.; Corn, J. E.; Dewitt, M. A.

10.1101/335729 — genetics — Posted on 2018-05-31

49 Low incidence of plastic ingestion among three fish species significant for human consumption on the island of Newfoundland, Canada

Liboiron, M.; Melvin, J.; Richard, N.; Saturno, J.; Ammendolia, J.; Liboiron, F.; Charron, L.; Mather, C.

10.1101/332858 — ecology — Posted on 2018-05-31

50 Nothing else matters? A nationwide study of microhabitats drivers at the tree scale

Paillet, Y.; Debaive, N.; Archaux, F.; Boulanger, V.; Gilg, O.; Guilbert, E.

10.1101/335836 — ecology — Posted on 2018-05-31

51 Flow-independent accumulation of motor-competent non-muscle myosin II in the contractile ring is essential for cytokinesis

Osorio, D. S.; Chan, F. Y.; Saramago, J.; Leite, J.; Silva, A. M.; Sobral, A. F.; Gassmann, R.; Xavier Carvalho, A.

10.1101/333286 — cell biology — Posted on 2018-05-31

52 Receptive field center-surround interactions mediate context-dependent spatial contrast encoding in the retina

Turner, M. H.; Schwartz, G. W.; Rieke, F.

10.1101/252148 — neuroscience — Posted on 2018-05-31

53 scQuery: a web server for comparative analysis of single-cell RNA-seq data

Alavi, A.; Ruffalo, M.; Parvangada, A.; Huang, Z.; Bar-Joseph, Z.

10.1101/323238 — bioinformatics — Posted on 2018-05-31

54 Proteomic Analysis of ACE Inhibitory Peptides extracted from Fermented Goat Milk

Aslam, M. Z.; Shoukat, S.; Zhao, H.; Zhang, B.

10.1101/336107 — microbiology — Posted on 2018-05-31

55 Principal Component Analysis applied directly to Sequence Matrix

Konishi, T.; Matsukuma, S.; Fuji, H.; Nakamura, D.; Satou, N.; Okano, K.

10.1101/336115 — evolutionary biology — Posted on 2018-05-31

56 Complexity of ABA signaling for stomatal development and aperture regulation

Jalakas, P.; Merilo, E.; Kollist, H.; Brosche, M.

10.1101/335810 — plant biology — Posted on 2018-05-31

57 CellTag Indexing: a genetic barcode-based multiplexing tool for single-cell technologies

Guo, C.; Biddy, B. A.; Kamimoto, K.; Kong, W.; Morris, S. A.

10.1101/335547 — genomics — Posted on 2018-05-31

58 Week-long imaging of cell divisions in the Arabidopsis root meristem

Rahni, R.; Birnbaum, K. D.

10.1101/268102 — developmental biology — Posted on 2018-05-31

59 SCHiRM: Single Cell Hierarchical Regression Model to detect dependencies in read count data

Intosalmi, J.; Mannerstrom, H.; Hiltunen, S.; Lahdesmaki, H.

10.1101/335695 — bioinformatics — Posted on 2018-05-31

60 Correlations, interactions, and predictability in virus-microbe communities

Coenen, A. R.; Weitz, J. S.

10.1101/176628 — ecology — Posted on 2018-05-31

61 STRetch: detecting and discovering pathogenic short tandem repeats expansions

Dashnow, H.; Lek, M.; Phipson, B.; Halman, A.; Davis, M.; Lamont, P.; Clayton, J.; Laing, N.; MacArthur, D.; Oshlack, A.

10.1101/159228 — bioinformatics — Posted on 2018-05-31

62 Many rice genes are differentially spliced between roots and shoots but cytokinin hormone application has minimal effect on splicing

Freese, N.; Estrada, A. D.; Blakley, I. C.; Duan, J.; Loraine, A. E.

10.1101/293217 — molecular biology — Posted on 2018-05-31

63 Pharmacodynamic Considerations of Collateral Sensitivity in Design of Antibiotic Treatment Regimen

Udekwu, K. I.; Weiss, H.

10.1101/189381 — microbiology — Posted on 2018-05-31

64 Growth tradeoffs produce complex microbial communities on a single limiting resource

Manhart, M.; Shakhnovich, E.

10.1101/266569 — ecology — Posted on 2018-05-31

65 Physical Principles of HIV Integration in the Human Genome

Michieletto, D.; Lusic, M.; Marenduzzo, D.; Orlandini, E.

10.1101/247437 — biophysics — Posted on 2018-05-31

66 Excitable dynamics of NREM sleep: a unifying model for neocortex and hippocampus

Levenstein, D.; Buzsaki, G.; Rinzel, J.

10.1101/312587 — neuroscience — Posted on 2018-05-31

67 Within-subject combination of diffusion tensor MRI and CLARITY reveals alterations in the social brain network resulting from α-neurexin II deletion

Pervolaraki, E.; Tyson, A. L.; Pibiri, F.; Poulter, S. L.; Reichelt, A. C.; Rodgers, R. J.; Clapcote, S. J.; Lever, C.; Andreae, L. C.; Dachtler, J.

10.1101/300806 — neuroscience — Posted on 2018-05-31

68 Neuronal population mechanisms of lightness perception

Ruff, D. A.; Brainard, D. H.; Cohen, M. R.

10.1101/294280 — neuroscience — Posted on 2018-05-31

69 Combinations of DIPs and Dprs control organization of olfactory receptor neuron terminals in Drosophila

Barish, S.; Nuss, S.; Strunilin, I.; Bao, S.; Mukherjee, S.; Jones, C. D.; Volkan, P. C.

10.1101/316109 — neuroscience — Posted on 2018-05-31

70 Compensatory evolution drives multidrug-resistant tuberculosis in Central Asia

Merker, M.; Barbier, M.; Cox, H.; Rasigade, J.-P.; Feuerriegel, S.; Kohl, T. A.; Diel, R.; Borrell, S.; Gagneux, S.; Nikolayevskyy, V.; Andres, S.; Nübel, U.; Supply, P.; Wirth, T.; Niemann, S.

10.1101/334599 — evolutionary biology — Posted on 2018-05-31

71 Localization and protein-protein interaction of protein kinase CK2 suggest a chaperone-like activity is integral to its function in M. oryzae.

Zhang, L.; Zhang, D.; Chen, Y.; Ye, W.; Lin, Q.; Lu, G.; Ebbole, D. J.; Olsson, S.; Wang, Z.

10.1101/323816 — cell biology — Posted on 2018-05-31

72 Customizing material into embodied cap by sponge crab

Harada, K.; Kagaya, K.

10.1101/330787 — animal behavior and cognition — Posted on 2018-05-31

73 Natural variation in expression of the HECT E3 ligase UPL3 influences seed size and crop yields in Brassica napus by altering regulatory gene expression.

Miller, C.; Wells, R.; McKenzie, N.; Trick, M.; Ball, J.; Fatihi, A.; Debreuq, B.; Chardot, T.; Lepiniec, L.; Bevan, M. W.

10.1101/334581 — plant biology — Posted on 2018-05-31

74 Real time portable genome sequencing for global food security

Boykin, L. M.; Ghalab, A.; De Marchi, B. R.; Savill, A.; Wainaina, J. M.; Kinene, T.; Lamb, S.; Rodrigues, M.; Kehoe, M. A.; Ndunguru, J.; Tairo, F.; Sseruwagi, P.; Kayuki, C.; Mark, D.; Erasto, J.; Bachwenkizi, H.; Alicai, T.; Okao-Okuja, G.; Abidrabo, P.; Osingada, J. F.; Akono, J.; Ateka, E.; Muga, B.; Kiarie, S.

10.1101/314526 — plant biology — Posted on 2018-05-31

75 Information transfer in QT-RR dynamics: Application to QT-correction

Potapov, I.; Latukka, J.; Kim, J.; Luukko, P.; Aalto-Setälä, K.; Räsänen, E.

10.1101/269670 — biophysics — Posted on 2018-05-31

76 A High-throughput Neurohistological Pipeline for Brain-Wide Mesoscale Connectivity Mapping of the Common Marmoset

Lin, M. K.; Takahashi, Y. S.; Huo, B.-X.; Hanada, M.; Nagashima, J.; Hata, J.; Tolpygo, A. S.; Ram, K.; Lee, B. C.; Miller, M. I.; Rosa, M. G. P.; Sasaki, E.; Iriki, A.; Okano, H.; Mitra, P. P.

10.1101/315804 — neuroscience — Posted on 2018-05-31

77 Assortment of flowering time and immunity alleles in natural Arabidopsis thaliana populations suggests immunity and vegetative lifespan strategies coevolve

Glander, S.; He, F.; Schmitz, G.; Witten, A.; Telschow, A.; de Meaux, J.

10.1101/131136 — evolutionary biology — Posted on 2018-05-31

78 The RHIM within the M45 protein from murine cytomegalovirus forms heteromeric amyloid fibrils with RIPK1 and RIPK3

Pham, C. L. L.; Strange, M.; O' Carroll, A.; Shanmugam, N.; Sierecki, E.; Gambin, Y.; Steain, M.; Sunde, M.

10.1101/324590 — biophysics — Posted on 2018-05-31

79 Optogenetic manipulation of medullary neurons in the locust optic lobe

Wang, H.; Dewell, R. B.; Ehrengruber, M. U.; Segev, E.; Reimer, J.; Roukes, M. L.; Gabbiani, F.

10.1101/334003 — neuroscience — Posted on 2018-05-31

80 Diagnosing Bacterial Vaginosis with a Novel, Clinically-Actionable Molecular Diagnostic Tool

Jarvis, J. P.; Rains, D.; Kradel, S. J.; Elliott, J.; Diamond, E. E.; Avaniss-Aghajani, E.; Yasharpour, F.; Shaman, J. A.

10.1101/334177 — microbiology — Posted on 2018-05-31

81 Rap2 and TNIK control Plexin-dependent synaptic tiling in C. elegans

Chen, X.; Shibata, A. C.; Hendi, A.; Kurashina, M.; Fortes, E.; Weilinger, N. L.; MacVicar, B.; Murakoshi, H.; Mizumoto, K.

10.1101/238352 — neuroscience — Posted on 2018-05-31

82 Histopathological image QTL discovery of immune infiltration variants

Barry, J. D.; Fagny, M.; Paulson, J. N.; Aerts, H.; Platig, J.; Quackenbush, J.

10.1101/126730 — genomics — Posted on 2018-05-31

83 Resource-dependent dispersal and the irrelevance of extra-patch information for Daphnia carinata

Erm, P.; Hall, M. D.; Phillips, B. L.

10.1101/334243 — ecology — Posted on 2018-05-31

84 Barcoded Rational AAV Vector Evolution enables systematic in vivo mapping of peptide binding motifs

Davidsson, M.; Wang, G.; Aldrin-Kirk, P.; Cardoso, T.; Nolbrant, S.; Hartnor, M.; Parmar, M.; Bjorklund, T.

10.1101/335372 — neuroscience — Posted on 2018-05-31

85 Alzheimer’s disease: the large gene instability hypothesis

Soheili-Nezhad, S.

10.1101/189712 — neuroscience — Posted on 2018-05-31

86 Biophysical basis of disruption in alpha rhythm in Alzheimer’s disease

Sharma, R.; Nadkarni, S.

10.1101/335471 — neuroscience — Posted on 2018-05-31

87 Computational analysis of the Plasmodiophora brassicae genome: mitochondrial sequence description and metabolic pathway database design

Daval, S.; Belcour, A.; Gazengel, K.; Legrand, L.; Gouzy, J.; Cottret, L.; Lebreton, L.; Aigu, Y.; Mougel, C.; Manzanares-Dauleux, M.

10.1101/335406 — genomics — Posted on 2018-05-31

88 Disrupting folate metabolism alters the capacity of bacteria in exponential growth to develop persisters to antibiotics

Morgan, J.; Smith, M.; Mc Auley, M. T.; Salcedo-Sora, J. E.

10.1101/335505 — microbiology — Posted on 2018-05-31

89 Loss of the Wnt/β-catenin pathway in microglia of the developing brain drives pro-inflammatory activation leading to white matter injury

Van Steenwinckel, J.; Schang, A.-L.; Krishnan, M. L.; Degos, V.; Delahaye-Duriez, A.; Bokobza, C.; Verdonk, F.; Montane, A.; Sigaut, S.; Hennebert, O.; Lebon, S.; Schwendimann, L.; Le Charpentier, T.; Hassan-Abdi, R.; Ball, G.; Aljabar, P.; Saxena, A.; Holloway, R. K.; Birchmeier, W.; Miron, V.; Rowitch, D.; Chretien, F.; Leconte, C.; Besson, V. C.; Petretto, E. G.; Edwards, A. D.; Hagberg, H.; Soussi-Yanicostas, N.; Fleiss, B.; Gressens, P.

10.1101/334359 — immunology — Posted on 2018-05-31

90 Removal of alleles by genome editing -- RAGE against the deleterious load

Johnsson, M.; Gaynor, R. C.; Jenko, J.; Gorjanc, G.; de Koning, D.-J.; Hickey, J. M.

10.1101/335497 — genetics — Posted on 2018-05-31

91 Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images

Caicedo, J.; Roth, J.; Goodman, A.; Becker, T.; Karhohs, K. W.; McQuin, C.; Singh, S.; Carpenter, A. E.

10.1101/335216 — bioinformatics — Posted on 2018-05-31

92 Using Topic Modeling via Non-negative Matrix Factorization to Identify Relationships between Genetic Variants and Disease Phenotypes: A Case Study of Lipoprotein(a) (LPA)

Zhao, J.; Feng, Q.; Wu, P.; Warner, J. L.; Denny, J. C.; Wei, W.-Q.

10.1101/335745 — genetics — Posted on 2018-05-31

93 The role of gene flow in rapid and repeated evolution of cave related traits in Mexican tetra, Astyanax mexicanus

Herman, A.; Brandvain, Y.; Weagley, J.; Jeffery, W. R.; Keene, A. C.; Kono, T. J. Y.; Bilandzija, H.; Borowsky, R.; Espinasa, L.; O'Quin, K.; Ornelas-Garcia, C. P.; Yoshizawa, M.; Carlson, B.; Maldonado, E.; Gross, J. B.; Cartwright, R. A.; Rohner, N.; Warren, W. C.; McGaugh, S. E.

10.1101/335182 — evolutionary biology — Posted on 2018-05-31

94 Identification of biological mechanisms by semantic classifier systems

Lausser, L.; Schmid, F.; Siegle, L.; Hühne, R.; Buchholz, M.; Kestler, H. A.

10.1101/335737 — systems biology — Posted on 2018-05-31

95 Widespread inter-individual gene expression variability in Arabidopsis thaliana

Cortijo, S.; Aydin, Z.; Ahnert, S.; Locke, J.

10.1101/335380 — plant biology — Posted on 2018-05-31

96 A network-based model for drug repurposing in Rheumatoid Arthritis

Kim, K.-J.; Rai, N.; Kim, M.; Tagkopoulos, I.

10.1101/335679 — systems biology — Posted on 2018-05-31

97 Endoplasmic Reticulum Retention Motif Fused to Recombinant Anti-cancer Monoclonal Antibody (mAb) CO17-1A Affects mAb Expression and Plant Stress Response

Song, I.; Kang, Y. J.; Lee, Y. K.; Myung, S.-c.; Ko, K.

10.1101/335646 — plant biology — Posted on 2018-05-31

98 Large-scale docking predicts that sORF-encoded peptides may function through protein-peptide interactions in Arabidopsis thaliana

Hazarika, R.; Sostaric, N.; Sun, Y.; van Noort, V.

10.1101/335687 — bioinformatics — Posted on 2018-05-31

99 Systematic Review on Barriers and Facilitators for Access to Diabetic Retinopathy Screening Services

Piyasena, M. M. P. N.; Murthy, G. V. S.; Yip, J. L. Y.; Gilbert, C.; Zurrmond, M.; Peto, T.; Gordon, I.; Hewage, S.; Kamalakannan, S.

10.1101/335638 — epidemiology — Posted on 2018-05-31

100 Humanized Mcl-1 mice enable accurate pre-clinical evaluation of MCL-1 inhibitors destined for clinical use

Brennan, M. S.; Chang, C.; Dewson, G.; Tai, L.; Lessene, G.; Strasser, A.; Kelly, G. L.; Herold, M. J.

10.1101/335430 — cancer biology — Posted on 2018-05-31

101 Novel RNA aptamers targeting gastrointestinal cancer biomarkers CEA, CA50 and CA72-4 with superior affinity and specificity

Pan, Q.; Law, C. O. K.; Yung, M. M. H.; Han, K. C.; Pon, Y. L.; Lau, T. c. k.

10.1101/335620 — cancer biology — Posted on 2018-05-31

102 Bile acids target proteolipid nano-assemblies of EGFR and phosphatidic acid in the plasma membrane for stimulation of MAPK signaling

Liang, H.; Estes, M. K.; Zhang, H.; Du, G.; Zhou, Y.; N/A,

10.1101/335604 — biophysics — Posted on 2018-05-31

103 Ammonium Pretreatment and Addition Improve Stability of Environmental Parameters and Biogas Production under Anaerobic Co-digestion of Rice Straw and Dairy Manure

Tang, Y.; Zou, S.; Kang, D.

10.1101/335588 — bioengineering — Posted on 2018-05-31

104 A genetically-encoded fluorescent sensor enables rapid and specific detection of dopamine in flies, fish, and mice

Sun, F.; Zeng, J.; Jing, M.; Zhou, J.; Feng, J.; Owen, S. F.; Luo, Y.; Li, F.; Yamaguchi, T.; Yong, Z.; Gao, Y.; Peng, W.; Wang, L.; Zhang, S.; Du, J.; Lin, D.; Xu, M.; Kreitzer, A. C.; Cui, G.; Li, Y.

10.1101/332528 — neuroscience — Posted on 2018-05-31

105 Proteome and microbiota analysis reveals alterations of liver-gut axis under different stocking density of Peking ducks

Wu, Y.; Li, J.; Qin, X.; Sun, S.; Shahid, M.; Yin, D.; Yuan, J.

10.1101/335570 — microbiology — Posted on 2018-05-31

106 TGFβ stimulates fibroblast-like synovial cells to produce ED-A fibronectin in osteoarthritis

Kragstrup, T. W.; Sohn, D. H.; Lepus, C. M.; Onuma, K.; Wang, Q.; Robinson, W. H.; Sokolove, J.

10.1101/335562 — immunology — Posted on 2018-05-31

107 Antimicrobial exposure in sexual networks drives divergent evolution in modern gonococci

Sanchez-Buso, L.; Golparian, D.; Corander, J.; Grad, Y. H.; Ohnishi, M.; Flemming, R.; Parkhill, J.; Bentley, S. D.; Unemo, M.; Harris, S. R.

10.1101/334847 — genomics — Posted on 2018-05-31

108 CRISPR/Cas9-mediated knock-out of dUTPase in mice leads to early embryonic lethality

Palinkas, H. L.; Racz, G.; Gal, Z.; Hoffmann, O.; Tihanyi, G.; Gocza, E.; Hiripi, L.; Vertessy, B.

10.1101/335422 — developmental biology — Posted on 2018-05-31

109 Cross-protective immune responses induced by sequential influenza virus infection and by sequential vaccination with inactivated influenza vaccines

Dong, W.; Bhide, Y.; Sicca, F.; Meijerhof, T.; Guilfoyle, K.; G. Engelhardt, O.; Boon, L.; A.M. de Haan, C.; Carnell, G.; Temperton, N.; de Vries-Idema, J.; Kelvin, D. J.; Huckriede, A.

10.1101/335281 — microbiology — Posted on 2018-05-31

110 Virus-Like Particles and Magnetic Microspheres Provide a Flexible and Sustainable Multiplexed Alphavirus Immunodiagnostic Platform

Ricks, K. M.; Shoemaker, C. J.; Dupuy, L. C.; Flusin, O.; Voorhees, M. A.; Fulmer, A. N.; Six, C. M.; Badger, C. V.; Schmaljohn, C. S.; Schoepp, R. J.

10.1101/335315 — microbiology — Posted on 2018-05-31

111 Speciation with gene flow via cycles of isolation and migration: Insights from multiple mangrove taxa

He, Z.; Li, X.; Yang, M.; Wang, X.; Zhong, C.; Duke, N. C.; Shi, S.; Wu, C.-I.

10.1101/335166 — evolutionary biology — Posted on 2018-05-31

112 Limited One-time Sampling Irregularity Age Map (LOTS-IAM): Automatic Unsupervised Detection of Brain White Matter Abnormalities in Structural Magnetic Resonance Images

Rachmadi, M. F.; Valdes Hernandez, M.; Li, H.; Guerrero, R.; Zhang, J.; Rueckert, D.; Komura, T.

10.1101/334292 — neuroscience — Posted on 2018-05-31

113 M-current regulates firing mode and spike reliability in a collision detecting neuron

Gabbiani, F.; Dewell, R.

10.1101/335174 — neuroscience — Posted on 2018-05-31

114 Epidemiologal investigation of an Acinetobacter baumannii outbreak using Core Genome Multilocus Sequence Typing

Venditti, C.; Vulcano, A.; D'Arezzo, S.; Gruber, C. E. M.; Selleri, M.; Antonini, M.; Lanini, S.; Marani, A.; Puro, V.; Nisii, C.; Di Caro, A.

10.1101/335307 — molecular biology — Posted on 2018-05-31

115 Multiple Flagellin Proteins Have Distinct and Synergistic Roles in Agrobacterium tumefaciens Motility

Mohari, B.; Thompson, M. A.; Trinidad, J.; Fuqua, C.

10.1101/335265 — microbiology — Posted on 2018-05-31

116 Characterizing the Effects of Glutathione as an Immunoadjuvant in the Treatment of Tuberculosis

Venketaraman, V.; Cao, R.; Teskey, G.; Islamoglu, H.; Abrahem, R.; Gyurjian, K.; Zhong, L.

10.1101/335323 — microbiology — Posted on 2018-05-31

117 Identification of a novel tetrameric structure for human apolipoprotein-D

Kielkopf, C. S.; Low, J. K. K.; Mok, Y.-F.; Bhatia, S.; Palasovski, T.; Oakley, A. J.; Whitten, A. E.; Garner, B.; Brown, S. H. J.

10.1101/335232 — biochemistry — Posted on 2018-05-31

118 Photosynthesis under very high oxygen concentrations in dense microbial mats and biofilms

de Beer, D.; Meyer, V.; Klatt, J. M.; Li, T.

10.1101/335299 — microbiology — Posted on 2018-05-31

119 Hepatitis C virus NS5A inhibitor daclatasvir allosterically impairs NS4B-involved protein-protein interactions within the viral replicase and disrupts the replicase quaternary structure in a replicase assembly surrogate system

Zhang, Y.; Zou, J.; Zhao, X.; Yuan, Z.; Yi, Z.

10.1101/335273 — microbiology — Posted on 2018-05-31

120 Cell shape independent FtsZ dynamics in synthetically remodeled cells

Soederstroem, B.; Badrutdinov, A.; Chan, H.; Skoglund, U.

10.1101/335356 — microbiology — Posted on 2018-05-31

121 A capsular polysaccharide-expressing live vaccine suppresses streptococcal toxic shock-like syndrome and provides sequence type-independent protection during Streptococcus suis infection

Li, Z.; Chang, P.; Xu, J.; Wang, X.; Bei, W.; Tan, C.; Li, J.

10.1101/335349 — microbiology — Posted on 2018-05-31

122 Xanthine urolithiasis: Inhibitors of xanthine crystallization

Grases, F.; Costa-Bauza, A.; Roig, J.; Rodriguez, A.

10.1101/335364 — pharmacology and toxicology — Posted on 2018-05-31

123 Penalized matrix decomposition for denoising, compression, and improved demixing of functional imaging data

Buchanan, E. K.; Kinsella, I.; Zhou, D.; Zhu, R.; Zhou, P.; Gerhard, F.; Ferrante, J.; Ma, Y.; Kim, S.; Shaik, M.; Liang, Y.; Lu, R.; Reimer, J.; Fahey, P.; Muhammad, T.; Dempsey, G.; Hillman, E.; Ji, N.; Tolias, A.; Paninski, L.

10.1101/334706 — neuroscience — Posted on 2018-05-30

124 The evolutionary game theory of interspecific mutualism in multi-species communities

Shibasaki, S.

10.1101/335133 — evolutionary biology — Posted on 2018-05-30

125 Applications for deep learning in ecology

Christin, S.; Hervet, E.; Lecomte, N.

10.1101/334854 — ecology — Posted on 2018-05-30

126 Klebsiella huaxiensis sp. nov., recovered from human urine

Hu, Y.; Wei, L.; Feng, Y.; Xie, Y.; Zong, Z.

10.1101/335075 — microbiology — Posted on 2018-05-30

127 Biological capacities clearly define a major subdivision in Domain Bacteria

Meheust, R.; Burstein, D.; Castelle, C. J.; Banfield, J. F.

10.1101/335083 — microbiology — Posted on 2018-05-30

128 Aedes anphevirus (AeAV): an insect-specific virus distributed worldwide in Aedes aegypti mosquitoes that has complex interplays with Wolbachia and dengue virus infection in cells

Parry, R.; Asgari, S.

10.1101/335067 — microbiology — Posted on 2018-05-30

129 Genome sequence of Jaltomata addresses rapid reproductive trait evolution and enhances comparative genomics in the hyper-diverse Solanaceae

Wu, M.; Kostyun, J.; Moyle, L.

10.1101/335117 — evolutionary biology — Posted on 2018-05-30

130 Cell-free production of full-length ice nucleating protein InaZ

Novikova, I. V.; China, S.; Evans, J. E.

10.1101/334987 — synthetic biology — Posted on 2018-05-30

131 Emotional recognition training modifies neural response to emotional faces but does not improve mood in healthy volunteers with high levels of depressive symptoms

Penton-Voak, I. S.; Adams, S.; Button, K. S.; Fluharty, M.; Dalili, M.; Browning, M.; Holmes, E.; Harmer, C.; Munafo, M. R.

10.1101/335042 — neuroscience — Posted on 2018-05-30

132 POT1a depletion in the developing brain leads to p53-dependent neuronal cell death and ataxia.

She, R.; Clapp, C.; Lazzerini Denchi, E.

10.1101/335059 — molecular biology — Posted on 2018-05-30

133 Whole genome linkage disequilibrium and effective population size in a coho salmon (Oncorhynchus kisutch) breeding population

Barria, A.; Christensen, K. A.; Yoshida, G.; Jedlicki, A. M.; Lhorente, J. P.; Davidson, W. S.; Yanez, J. M.

10.1101/335018 — genomics — Posted on 2018-05-30

134 Reconstructing Neuronal Circuitry from Parallel Spike Trains

Kobayashi, R.; Kurita, S.; Kitano, K.; Mizuseki, K.; Richmond, B. J.; Shinomoto, S.

10.1101/334078 — neuroscience — Posted on 2018-05-30

135 Microbial Community Structure and Diversity of Shrimp Paste at Different Fermentation Stages

Qi, B.; Dai, L.; Wang, L.; Sun, J.; Zheng, L.

10.1101/334136 — microbiology — Posted on 2018-05-30

136 Transformation of Quotient Values for their use as Continuous Cladistic Characters

Vidovic, S. U.

10.1101/333781 — evolutionary biology — Posted on 2018-05-30

137 Genotypic diversity, circulation patterns, and co-detections among rhinoviruses in Queensland, 2001

Arden, K. E.; Greer, R. M.; Wang, C. Y.; Mackay, I. M.

10.1101/334334 — microbiology — Posted on 2018-05-30

138 Inferring Tumour Proliferative Organisation from Phylogenetic Tree Measures in a Computational Model

Scott, J. G.; Anderson, A. R.; Maini, P. K.; Fletcher, A. G.

10.1101/334946 — cancer biology — Posted on 2018-05-30

139 Domain Insertion Permissibility is a Measure of Engineerable Allostery in Ion Channels

Coyote-Maestas, W.; He, Y.; Myers, C. L.; Schmidt, D.

10.1101/334672 — biochemistry — Posted on 2018-05-30

140 Feed-forward inhibition conveys time-varying stimulus information in a collision detection circuit

Wang, H.; Dewell, R. B.; Zhu, Y.; Gabbiani, F.

10.1101/217430 — neuroscience — Posted on 2018-05-30

141 xMD-miRNA-seq to generate near in vivo miRNA expression estimates in colon epithelial cells

Rosenberg, A. Z.; Wright, C.; Fox-Talbot, K.; Rajpurohit, A.; Williams, C.; Porter, C.; Kovbasnjuk, O.; McCall, M. N.; Shin, J. H.; Halushka, M. K.

10.1101/333658 — molecular biology — Posted on 2018-05-30

142 Diagnosing Bacterial Vaginosis with a Novel, Clinically-Actionable 1 Molecular Diagnostic Tool

Jarivs, J. P.; Rains, D.; Kradel, S. J.; Elliott, J.; Diamond, E. E.; Avaniss-Aghajani, E.; Yasharpour, F.; Shaman, J. A.

10.1101/334177 — microbiology — Posted on 2018-05-30

143 Measuring the archaeome: detection and quantification of archaea signatures in the human body

Pausan, M. R.; Csorba, C.; Singer, G.; Till, H.; Schoepf, V.; Santigli, E.; Klug, B.; Hoegenauer, C.; Blohs, M.; Moissl-Eichinger, C.

10.1101/334748 — microbiology — Posted on 2018-05-30

144 Characterization of influenza B virus variants with reduced neuraminidase inhibitor susceptibility

Farrukee, R.; Alex, Z. E.; James, M.; Bloom, J. D.; Reading, P.; Hurt, A. C.

10.1101/334201 — microbiology — Posted on 2018-05-30

145 Resource-dependent dispersal and the irrelevance of extra-patch information for Daphnia carinata

Erm, P.; Hall, M. D.; Phillips, B. L.

10.1101/334243 — ecology — Posted on 2018-05-30

146 Convolving Pre-Trained Convolutional Neural Networks at Various Magnifications to Extract Diagnostic Features for Digital Pathology

Sidhom, J.-W.; Baras, A.

10.1101/333773 — bioinformatics — Posted on 2018-05-30

147 ClusterMap: Compare analysis across multiple Single Cell RNA-Seq profiling

Gao, X.; Hu, D.; Li, H.

10.1101/331330 — bioinformatics — Posted on 2018-05-30

148 Detection of cellular microRNAs with programmable DNA nanoswitches

Chandrasekaran, A. R.; MacIsaac, M.; Dey, P.; Levchenko, O.; Zhou, L.; Andres, M.; Dey, B. K.; Halvorsen, K.

10.1101/334631 — bioengineering — Posted on 2018-05-30

149 Optogenetic manipulation of medullary neurons in the locust optic lobe

Wang, H.; Dewell, R. B.; Ehrengruber, M. U.; Segev, E.; Reimer, J.; Roukes, M. L.; Gabbiani, F.

10.1101/334003 — neuroscience — Posted on 2018-05-30

150 The hotspots in primate cortical brain evolution support supramodal cognitive flexibility

Sneve, M. H.; Grydeland, H.; Rosa, M. G. P.; Paus, T.; Chaplin, T.; Walhovd, K. B.; Fjell, A. M.

10.1101/333930 — neuroscience — Posted on 2018-05-30

151 Attenuated post-movement beta rebound in Parkinson’s disease to proprioceptive afferent feedback

Vinding, M. C.; Tsitsi, P.; Piitulainen, H.; Blume, J.; Jousmaki, V.; Ingvar, M.; Svenningsson, P.; Lundqvist, D.

10.1101/334565 — neuroscience — Posted on 2018-05-30

152 Synergy and convergence of pathways controlling functional regeneration in the spinal cord

Carlstrom, L. P.; Cheever, T. R.; Schoenfuss, H. L.; McGee, M. R.; Ekker, S. C.; Henley, J. R.

10.1101/334029 — neuroscience — Posted on 2018-05-30

153 Dissociating cognitive and motoric precursors of human self-initiated action

Khalighinejad, N.; Brann, E.; Dorgham, A.; Haggard, P.

10.1101/326686 — neuroscience — Posted on 2018-05-30

154 LMO7 deficiency reveals the significance of the cuticular plate for hearing function

Du, T.-T.; Dewey, J. B.; Wagner, E. L.; Francis, S. P.; Perez-Reyes, E.; Xu, W.; Oghalai, J. S.; Shin, J.-B.

10.1101/334052 — neuroscience — Posted on 2018-05-30

155 Different states of priority recruit different neural codes in visual working memory

Yu, Q.; Postle, B. R.

10.1101/334920 — neuroscience — Posted on 2018-05-30

156 The RASSF6 tumor suppressor protein regulates apoptosis and cell cycle progression via Retinoblastoma protein.

Hossain, S.; Iwasa, H.; Sarkar, A.; Maruyama, J.; Arimoto-Matsuzaki, K.; Hata, Y.

10.1101/334276 — molecular biology — Posted on 2018-05-30

157 Deciphering the targets of retroviral protease inhibitors in Plasmodium berghei

Onchieku, N.; Mogire, R.; Ndung'u, L.; Mwitari, P.; Kimani, F.; Matoke-Muhia, D.; Kiboi, D.; Magoma, G.

10.1101/334524 — molecular biology — Posted on 2018-05-30

158 Cargo Transport Shapes the Spatial Organization of a Microbial Community

Shrivastava, A.; Patel, V.; Tang, Y.; Yost, S. C.; Dewhirst, F. E.; Berg, H. C.

10.1101/318600 — microbiology — Posted on 2018-05-30

159 Transdermal, but not oral mucosa exposure, causes sublethal leptospirosis in mice

Nair, N.; Gomes-Solecki, M.

10.1101/334219 — microbiology — Posted on 2018-05-30

160 ESCRT and autophagy cooperate to repair ESX-1-dependent damage to the Mycobacterium-containing vacuole

Lopez-Jimenez, A. T.; Cardenal Munoz, E.; Leuba, F.; Gerstenmaier, L.; Hagedorn, M.; King, J. S.; Soldati, T.

10.1101/334755 — microbiology — Posted on 2018-05-30

161 The Metabolic Capability and Phylogenetic Diversity of Mono Lake During a Bloom of the Eukaryotic Phototroph Picocystis strain ML

Stamps, B. W.; Nunn, H. S.; Petryshyn, V. A.; Oremland, R. S.; Miller, L. G.; Rosen, M.; Bauer, K. W.; Thompson, K. J.; Tookmanian, E. M.; Waldeck, A. R.; Lloyd, S. J.; Johnson, H. A.; Stevenson, B. S.; Berelson, W.; Corsetti, F. A.; Spear, J. R.

10.1101/334144 — microbiology — Posted on 2018-05-30

162 Protein Gradients on the Nucleoid Position the Carbon-fixing Organelles of Cyanobacteria

MacCready, J. S.; Hakim, P.; Young, E. J.; Hu, L.; Liu, J.; Osteryoung, K. W.; Vecchiarelli, A. G.; Ducat, D. C.

10.1101/334813 — microbiology — Posted on 2018-05-30

163 Using deep whole genome sequence, transcriptome and epigenome data to characterize the mutational burden of induced pluripotent stem cells

D'Antonio, M.; Benaglio, P.; Jakubosky, D. A.; Greenwald, W. W.; Matsui, H.; Donovan, M. K. R.; Li, H.; Smith, E. N.; D'Antonio-Chronowska, A.; Frazer, K. A.

10.1101/334870 — genomics — Posted on 2018-05-30

164 Nuclear and mitochondrial phylogenomics of the Diplostomoidea and Diplostomida (Digenea, Platyhelminthes)

Locke, S. A.; Van Dam, A.; Caffara, M.; Pinto, H. A.; Lopez-Hernandez, D.; Blanar, C.

10.1101/333518 — evolutionary biology — Posted on 2018-05-30

165 Global genetic diversity of small ruminant lentiviruses, and a hypothesis regarding their pandemic spread.

Carrozza, M.-L.; Niewiadomska, A.-M.; Mazzei, M.; Abi-Said, M.; Hue, S.; Singer, J. B.; Hughes, J.; Gifford, R. J.

10.1101/236117 — evolutionary biology — Posted on 2018-05-30

166 WNT signaling memory is required for ACTIVIN to function as a morphogen in human gastruloids

Yoney, A.; Etoc, F.; Ruzo, A.; Metzger, J. J.; Martyn, I.; Li, S.; Kirst, C.; Carroll, T.; Siggia, E. D.; Brivanlou, A. H.

10.1101/333948 — developmental biology — Posted on 2018-05-30

167 Chromatin-informed inference of transcriptional programs in gynecologic and basal breast cancers

Osmanbeyoglu, H. U.; Shimizu, F.; Rynne-Vidal, A.; Jelinic, P.; Mok, S. C.; Chiosis, G.; Levine, D. A.; Leslie, C. S.

10.1101/333757 — bioinformatics — Posted on 2018-05-30

168 Optically-Controlled \"Living Electrodes\" with Long-Projecting Axon Tracts for a Synaptic Brain-Machine Interface

Adewole, D. O.; Struzyna, L. A.; Harris, J. P.; Nemes, A. D.; Burrell, J. C.; Petrov, D.; Kraft, R. H.; Chen, H. I.; Serruya, M. D.; Wolf, J. A.; Cullen, D. K.

10.1101/333526 — bioengineering — Posted on 2018-05-30

169 Tracing a proteins folding pathway over evolutionary time using ancestral sequence reconstruction and hydrogen exchange

Lim, S. A.; Bolin, E. R.; Marqusee, S.

10.1101/334607 — biochemistry — Posted on 2018-05-30

170 SciReader*: A Cloud-based Recommender System for Biomedical Literature

Desai, P.; Telis, N.; Lehmann, B.; Bettinger, K.; Pritchard, J. K.; Datta, S.

10.1101/333922 — scientific communication and education — Posted on 2018-05-30

171 Natural variation in expression of the HECT E3 ligase UPL3 influences seed size and crop yields in Brassica napus by altering regulatory gene expression.

Miller, C.; Wells, R.; McKenzie, N.; Trick, M.; Ball, J.; Fatihi, A.; Debreuq, B.; Chardot, T.; Lepiniec, L.; Bevan, M. W.

10.1101/334581 — plant biology — Posted on 2018-05-30

172 Adiposity-Independent Effects of Aging on Insulin Sensitivity and Clearance in Humans and Mice

Ehrhardt, N.; Cui, J.; Dagdeviren, S.; Saengnipanthkul, S.; Goodridge, H. S.; Kim, J. K.; Lantier, L.; Guo, X.; Chen, Y.-D. I.; Raffel, L. J.; Buchanan, T. A.; Hsueh, W. A.; Rotter, J. I.; Goodarzi, M. O.; Peterfy, M.

10.1101/333997 — physiology — Posted on 2018-05-30

173 Characterization of Oral Tactile Sensitivity and Chewing Efficiency Across Adulthood

Shupe, G. E.; Resmondo, Z. N.; Luckett, C. R.

10.1101/333674 — physiology — Posted on 2018-05-30

174 The inhibition of automatic imitation: a meta-analysis and synthesis of fMRI studies

Darda, K. M.; Ramsey, R.

10.1101/334938 — neuroscience — Posted on 2018-05-30

175 Neural evidence for age differences in representational quality and strategic retrieval processes

Trelle, A. N.; Henson, R. N.; Simons, J.

10.1101/333484 — neuroscience — Posted on 2018-05-30

176 Forebrain dopamine value signals arise independently from midbrain dopamine cell firing.

Mohebi, A.; Pettibone, J.; Hamid, A.; Wong, J.-M.; Kennedy, R.; Berke, J.

10.1101/334060 — neuroscience — Posted on 2018-05-30

177 Disinhibition as a canonical neural mechanism for flexible behavior

Standage, D.; Pare, M.; Blohm, G.

10.1101/334797 — neuroscience — Posted on 2018-05-30

178 BDNF controls neuropsychiatric manifestation via autophagic regulation of p62 and GABAA receptor trafficking

Tomoda, T.; Sumitomo, A.; Hirota-Tsuyada, Y.; Miyachi, H.; Oh, H.; French, L.; Sibille, E.

10.1101/334466 — neuroscience — Posted on 2018-05-30

179 Weber’s law is the result of exact temporal accumulation of evidence

Pardo-Vazquez, J. L.; Castineiras, J.; Valente, M.; Costa, T.; Renart, A.

10.1101/333559 — neuroscience — Posted on 2018-05-30

180 Fast Hebbian Plasticity explains Working Memory and Neural Binding

Fiebig, F.; Herman, P.; Lansner, A.

10.1101/334821 — neuroscience — Posted on 2018-05-30

181 Co-outbreak of ST37 and a novel ST3006 Klebsiella pneumoniae from multi-site infection in a neonatal intensive care unit, Fuzhou, China

Chen, D.; Hu, X.; Chen, F.; Li, H.; Wang, D.; Li, X.; Wu, C.; Li, N.; Wu, S.; Li, Z.; Chen, L.; Chen, Y.

10.1101/334169 — microbiology — Posted on 2018-05-30

182 In vitro characterization of multidrug-resistant influenza A(H1N1)pdm09 viruses carrying a dual amino acid substitution associated with reduced susceptibility to neuraminidase inhibitors

Takashita, E.; Fujisaki, S.; Yokoyama, M.; Shirakura, M.; Nakamura, K.; Kuwahara, T.; Kishida, N.; Sato, H.; Doi, I.; Sato, Y.; Takao, S.; Shimazu, Y.; Shimomura, T.; Ito, T.; Watanabe, S.; Odagiri, T.; The Influenza Virus Surveillance Group of Japan,

10.1101/334185 — microbiology — Posted on 2018-05-30

183 Genetic, biochemical, and molecular characterization of Methanosarcina barkeri mutants lacking three distinct classes of hydrogenase

Kulkarni, G.; Mand, T. D.; Metcalf, W. W.

10.1101/334656 — microbiology — Posted on 2018-05-30

184 Antimicrobial Activity of Tetrabromobisphenol A (TBBPA) against Staphylococcus aureus Skin Infections

Wang, C.; Ji, F.; Chen, F.; Chen, B.; Zhou, Z.; Li, Z.; Liang, Y.

10.1101/334193 — microbiology — Posted on 2018-05-30

185 Hepatitis B Virus Inhibits Neutrophil Extracellular Traps Release by Modulating Reactive Oxygen Species Production and Autophagy

Hu, S.; Liu, X.; Gao, Y.; Zhou, R.; Yan, H.; Zhao, Y.

10.1101/334227 — immunology — Posted on 2018-05-30

186 Pellino 1 Communicates Intercellular Signaling in Chronic Skin Inflammatory Microenvironment

Lee, C.-W.; Kim, S.; Bae, S.; Park, J.; Ha, G.-H.; Hwang, K.; Kim, H.-S.; Ji, J.-H.; Go, H.

10.1101/334433 — immunology — Posted on 2018-05-30

187 New guidelines for DNA methylome studies regarding 5-hydroxymethylcytosine for understanding transcriptional regulation

Li, L.; Gao, Y.; Wu, Q.; Cheng, A. S. L.; Yip, K. Y.

10.1101/334318 — genomics — Posted on 2018-05-30

188 Identification of a Chimeric M4 Protein and Novel Emm Pattern in Currently Circulating Strains of Emm4 Group A Streptococcus

DebRoy, S.; Li, X.; Kalia, A.; Galloway-Pena, J.; Shah, B. J.; Fowler, V. G.; Flores, A. R.; Shelburne, S. A.

10.1101/333666 — genomics — Posted on 2018-05-30

189 The Neurospora crassa standard Oak Ridge background exhibits an atypically efficient meiotic silencing by unpaired DNA.

Giri, D. A.; Pankajam, A. V.; Nishant, K.; Kasbekar, D. P.

10.1101/333476 — genetics — Posted on 2018-05-30

190 Wealth-relative effects in cooperation games

Shuler, R.

10.1101/333971 — evolutionary biology — Posted on 2018-05-30

191 Vegetation monitoring using multispectral sensors - best practices and lessons learned from high latitudes

Assmann, J. J.; Kerby, J. T.; Cunliffe, A. M.; Myers-Smith, I. H.

10.1101/334730 — ecology — Posted on 2018-05-30

192 Mapping Antarctic suspension feeder abundances and seafloor food-availability, and modelling their change after a major glacier calving

Jansen, J.; Hill, N. A.; Dunstan, P. K.; Cougnon, E. A.; Galton-Fenzi, B. K.; Johnson, C. R.

10.1101/333955 — ecology — Posted on 2018-05-30

193 Commensal bacteria act as a broad genetic buffer in Drosophila during chronic under-nutrition

Ma, D.; Bou-Sleiman, M.; Joncour, P.; Indelicato, C.-E.; Frochaux, M.; Braman, V.; Litovchenko, M.; Storelli, G.; Deplancke, B.; Leulier, F.

10.1101/334342 — developmental biology — Posted on 2018-05-30

194 Chorioamnionitis Is a Risk Factor for Intraventricular Hemorrhage in Preterm Infants: A Systematic Review and Meta-Analysis

Villamor-Martinez, E.; Fumagalli, M.; Mohammed Rahim, O. M. M.; Passera, S.; Cavallaro, G.; Degraeuwe, P.; Mosca, F.; Villamor, E.

10.1101/334375 — developmental biology — Posted on 2018-05-30

195 Gamete fusion rapidly reconstitutes a bi-partite transcription factor to block re-fertilization

Vjestica, A.; Merlini, L.; Nkosi, P.; Martin, S. G.

10.1101/334953 — cell biology — Posted on 2018-05-30

196 Transmembrane Protein 135 (TMEM135) is a Liver X Receptor Target Gene that Mediates an Auxiliary Peroxisome Matrix Protein Import Pathway

Renquist, B. J.; Madanayake, T. W.; Ghimire, S.; Geisler, C. E.; Xu, Y.; Bogan, R. L.

10.1101/334979 — cell biology — Posted on 2018-05-30

197 Cellular heterogeneity in pressure and growth emerges from tissue topology and geometry

Long, Y.; Cheddadi, I.; Mirabet, V.; Dumond, M.; Godin, C.; Boudaoud, A.

10.1101/334664 — biophysics — Posted on 2018-05-30

198 Nucleotide-pair encoding of 16S rRNA sequences for host phenotype and biomarker detection

Asgari, E.; Münch, P. C.; Lesker, T. R.; McHardy, A. C.; Mofrad, M. R. K.

10.1101/334722 — bioinformatics — Posted on 2018-05-30

199 Semi-supervised Encoding for Outlier Detection in Clinical Observation Data

Estiri, H.; Murphy, S.

10.1101/334771 — bioinformatics — Posted on 2018-05-30

200 Analysing the structure of pathways and its influence on the interpretation of biomedical datasets

Burger, B.; Hernandez Sanchez, L. F.; Lereim, R. R.; Barsnes, H.; Vaudel, M.

10.1101/333492 — bioinformatics — Posted on 2018-05-30

201 Deconvoluting Virome-Wide Antiviral Antibody Profiling Data

Monaco, D.; Kottapalli, S.; Yuan, T.; Breitwieser, F.; Anderson, D.; Wijaya, L.; Tan, K.; Chia, W. N.; Kammers, K.; Caturegli, M.; Waugh, K.; Rewers, M.; Wang, L.-F.; Larman, H.

10.1101/333625 — bioinformatics — Posted on 2018-05-30

202 On an algorithmic definition for the components of the minimal cell

Martinez, O.; Reyes-Valdes, M. H.

10.1101/333682 — bioinformatics — Posted on 2018-05-30

203 An electrochemical biosensor for rapid detection of anti-dsDNA antibodies in absolute scale.

Fagundez, P.; Branas, G.; Laiz, J.; Tosar, J. P.

10.1101/333641 — bioengineering — Posted on 2018-05-30

204 Flux Balance Analysis Identifies Distinct NADPH Production Strategies Across NCI 60 Cancer Cell Lines

Ahmad, Z.

10.1101/332262 — bioengineering — Posted on 2018-05-30

205 Properties of cell signaling pathways and gene expression systems operating far from steady-state

Di Bella, J. P.; Colman-Lerner, A.; Ventura, A. C.

10.1101/334649 — systems biology — Posted on 2018-05-30

206 PlaScope: a targeted approach to assess the plasmidome of Escherichia coli strains

Royer, G.; Decousser, J.-W.; Branger, C.; Medigue, C.; Denamur, E.; Vallenet, D.

10.1101/334805 — bioinformatics — Posted on 2018-05-30

207 Body size-dependent energy storage causes Kleiber’s law scaling of the metabolic rate in planarians

Thommen, A.; Werner, S.; Frank, O.; Philipp, J.; Knittelfelder, O.; Quek, Y.; Fahmy, K.; Shevchenko, A.; Friedrich, B. M.; Julicher, F.; Rink, J. C.

10.1101/332916 — biophysics — Posted on 2018-05-30

208 Fast animal pose estimation using deep neural networks

Pereira, T. D.; Aldarondo, D. E.; Willmore, L.; Kislin, M.; Wang, S. S.- H.; Murthy, M.; Shaevitz, J. W.

10.1101/331181 — animal behavior and cognition — Posted on 2018-05-30

209 The Role of Untuned Neurons In Sensory Information Coding

Zylberberg, J.

10.1101/134379 — neuroscience — Posted on 2018-05-30

210 Persistent cell motility requires transcriptional feedback of cytoskeletal - focal adhesion equilibrium by YAP/TAZ

Mason, D. E.; Dawahare, J. H.; Nguyen, T. D.; Lin, Y.; Voytik-Harbin, S. L.; Zorlutuna, P.; Yoder, M. E.; Boerckel, J. D.

10.1101/265744 — cell biology — Posted on 2018-05-30

211 Genome Functional Annotation using Deep Convolutional Neural Networks

Khodabandelou, G.; Routhier, E.; Mozziconacci, J.

10.1101/330308 — bioinformatics — Posted on 2018-05-30

212 Deep learning: Using machine learning to study biological vision

Majaj, N. J.; Pelli, D. G.

10.1101/178152 — neuroscience — Posted on 2018-05-30

213 Cryopreservation of human mucosal tissues

Hughes, S. M.; Ferre, A. L.; Yandura, S. E.; Shetler, C.; Baker, C. A. R.; Calienes, F.; Levy, C. N.; Astronomo, R. D.; Shu, Z.; Lentz, G. M.; Fialkow, M.; Kirby, A. C.; McElrath, M. J.; Sinclair, E.; Rohan, L. C.; Anderson, P. L.; Shacklett, B. L.; Dezzutti, C. S.; Gao, D.; Hladik, F.

10.1101/262519 — immunology — Posted on 2018-05-30

214 Back-Translating A Rodent Measure Of Negative Bias Into Humans: The Impact Of Induced Anxiety And Unmedicated Mood And Anxiety Disorders

Aylward, J.; Hales, C.; Robinson, E.; Robinson, O. J.

10.1101/143453 — animal behavior and cognition — Posted on 2018-05-30

215 Tolerance to hypothermic and antinoceptive effects of∆9-tetrahydrocannabinol (THC) vapor inhalation in rats

Nguyen, J.; Grant, Y.; Kerr, T. M.; Gutierrez, A.; Cole, M.; Taffe, M. A.

10.1101/172759 — neuroscience — Posted on 2018-05-30

216 Exploratory re-encoding of Yellow Fever Virus genome: new insights for the design of live-attenuated viruses

Klitting, R.; Riziki, T.; Moureau, G.; Piorkowski, G.; Gould, E. A.; de Lamballerie, X.

10.1101/256610 — microbiology — Posted on 2018-05-30

217 Improving preterm newborn identification in low-resource settings with machine learning

Rittenhouse, K. J.; Vwalika, B.; Keil, A.; Winston, J.; Stoner, M.; Kapasa, M.; Price, J. T.; Mubambe, M.; Banda, V.; Munga, W.; Stringer, J.

10.1101/334904 — bioinformatics — Posted on 2018-05-30

218 The Emergent Connectome in Caenorhabditis elegans Embryogenesis

DevoWorm Group, ; Alicea, B. J.

10.1101/146035 — bioinformatics — Posted on 2018-05-30

219 Using machine learning models to predict oxygen saturation following ventilator support adjustment in critically ill children: a single center pilot study

Ghazal, S.; Sauthier, M.; Brossier, D.; Bouachir, W.; Jouvet, P. A.; Noumeir, R.

10.1101/334896 — physiology — Posted on 2018-05-30

220 Comparative evaluation of the GeeniusTM HIV 1/2 Confirmatory Assay and the HIV-1 and HIV-2 Western blots in the Japanese population

Kondo, M.; Sudo, K.; Sano, T.; Kawahata, T.; Itoda, I.; Iwamuro, S.; Yoshimura, Y.; Tachikawa, N.; Kojima, Y.; Mori, H.; Fujiwara, H.; Hasegawa, N.; Kato, S.

10.1101/334888 — molecular biology — Posted on 2018-05-30

221 Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development

Tokuoka, Y.; Yamada, T. G.; Hiroi, N.; Kobayashi, T. J.; Yamagata, K.; Funahashi, A.

10.1101/324186 — systems biology — Posted on 2018-05-30

222 Estimates for quality of life loss due to RSV

Hodgson, D.; Atkins, K.; Baguelin, M.; Panovska-Griffiths, J.; Thorrington, D.; van Hoek, A. J.; Zhao, H.; Fragaszy, E.; Hayward, A.; Pebody, R.

10.1101/321844 — epidemiology — Posted on 2018-05-30

223 Viewing one’s body during encoding boosts episodic memory

Brechet, L.; Mange, R.; Herbelin, B.; Gauthier, B.; Serino, A.; Blanke, O.

10.1101/318956 — neuroscience — Posted on 2018-05-30

224 Depolymerized lamins link nuclear envelope breakdown to mitotic transcriptional quiescence

Ikegami, K.; Secchia, S.; Lieb, J. D.; Moskowitz, I. P.

10.1101/334110 — molecular biology — Posted on 2018-05-30

225 Autonomous functionality of an upstream open reading frame in polycistronic mammalian mRNAs

Kitano, S.; Pratt, G.; Takao, K.; Aizawa, Y.

10.1101/325571 — molecular biology — Posted on 2018-05-30

226 WNT signaling memory is required for ACTIVIN to function as a morphogen in human gastruloids

Yoney, A.; Etoc, F.; Ruzo, A.; Metzger, J. J.; Martyn, I.; Li, S.; Kirst, C.; Carroll, T.; Siggia, E. D.; Brivanlou, A. H.

10.1101/333948 — developmental biology — Posted on 2018-05-30

227 The in situ structures of mono-, di-, and tri-nucleosomes in human heterochromatin

Cai, S.; Böck, D.; Pilhofer, M.; Gan, L.

10.1101/334490 — cell biology — Posted on 2018-05-30

228 Redefining mesothelioma types as a continuum uncovers the immune and vascular systems as key players in the diagnosis and prognosis of this disease

Alcala, N.; Caux, C.; Girard, N.; McKay, J. D. D.; Galateau-Salle, F.; Foll, M.; Fernandez-Cuesta, L.

10.1101/334326 — cancer biology — Posted on 2018-05-30

229 Pan-cancer machine learning predictors of tissue of origin and molecular subtype

Flynn, W. F.; Namburi, S.; Paisie, C. A.; Reddi, H. V.; Li, S.; Karuturi, R. K. M.; George, J.

10.1101/333914 — cancer biology — Posted on 2018-05-30

230 Purification of Cross-linked RNA-Protein Complexes by Phenol-Toluol Extraction

Urdaneta, E. C.; Vieira-Vieira, C. H.; Hick, T.; Wessels, H.-H.; Figini, D.; Moschall, R.; Medenbach, J.; Ohler, U.; Granneman, S.; Selbach, M.; Beckmann, B. M.

10.1101/333385 — molecular biology — Posted on 2018-05-30

231 WNT4 and WNT3A activate cell autonomous Wnt signaling independent of secretion

Rao, D. M.; Ferguson, R. L.; Sikora, M. J.

10.1101/333906 — cell biology — Posted on 2018-05-30

232 Characterization and identification of long non-coding RNAs based on feature relationship

Wang, G.; Yin, H.; Li, B.; Yu, C.; Wang, F.; Xu, X.; Cao, J.; Bao, Y.; Wang, L.; Abbasi, A.; Bajic, V.; Ma, L.; Zhang, Z.

10.1101/327882 — bioinformatics — Posted on 2018-05-30

233 Physiologically driven, altitude-adaptive model for the interpretation of pediatric oxygen saturation at altitudes above 2000 m a.s.l.

Moreo, M.; Tüshaus, L.; Zhang, J.; Hartinger, S. M.; Mäusezahl, D.; Karlen, W.

10.1101/334482 — physiology — Posted on 2018-05-30

234 Variation at the TRIM11 locus modifies Progressive Supranuclear Palsy phenotype

Jabbari, E.; John, W.; Tan, M. M.; Maryam, S.; Pittman, A.; Ferrari, R.; Mok, K. Y.; Zhang, D.; Reynolds, R. H.; de Silva, R.; Grimm, M.-J.; Respondek, G.; Muller, U.; Al-Sarraj, S.; Gentleman, S. M.; Lees, A. J.; Warner, T. T.; Hardy, J.; Revesz, T.; PROSPECT-UK consortium, ; Hoglinger, G. U.; Holton, J. L.; Ryten, M.; Morris, H. R.

10.1101/333195 — neuroscience — Posted on 2018-05-30

235 Cross-sectional white matter microstructure differences in aging and trait mindfulness

Boekel, W.; Hsieh, S.

10.1101/301739 — neuroscience — Posted on 2018-05-30

236 An amplitude code increases the efficiency of information transmission across a visual synapse

James, B.; Darnet, L.; Moya-Diaz, J.; Seibel, S.-H.; Lagnado, L.

10.1101/328682 — neuroscience — Posted on 2018-05-30

237 Isolation and antibiotic profile of Vibrio spp. in final effluents of two wastewater treatment plants in the Eastern Cape of South Africa

Osuolale, O.; Okoh, A.

10.1101/330456 — microbiology — Posted on 2018-05-30

238 Extreme and rapid bursts of functional adaptations shape bite force in amniotes

Sakamoto, M.; Ruta, M.; Venditti, C.

10.1101/333351 — evolutionary biology — Posted on 2018-05-30

239 Homeostasis, environmental tracking and phenotypic plasticity. I. A robust control theory approach to evolutionary design tradeoffs

Frank, S. A.

10.1101/332999 — evolutionary biology — Posted on 2018-05-30

240 The interaction of p130Cas with PKN3 promotes malignant growth

Gemperle, J.; Dibus, M.; Koudelkova, L.; Unsal-Kacmaz, K.; Rosel, D.; Brabek, J.

10.1101/334425 — cancer biology — Posted on 2018-05-30

241 Fronto-central P3a to distracting sounds: an index of their arousing properties

Masson, R.; Bidet-Caulet, A.

10.1101/333419 — neuroscience — Posted on 2018-05-30

242 Atxn2-CAG100-knock-in affects mouse lifespan and vestibulo-cerebellar function via neural disconnection

Halbach, M. V.; Sen, N.-E.; Canet-Pons, J.; Kuppens, B. W.; Segers, M.; Schonewille, M.; Rollmann, E.; Seidel, K.; Rueb, U.; Meierhofer, D.; Mittelbronn, M.; Harter, P.; De Zeeuw, C. I.; Almaguer-Mederos, L. E.; Gispert, S.; Bosman, L. W. J.; Auburger, G.

10.1101/333443 — neuroscience — Posted on 2018-05-30

243 PANDA: A comprehensive and flexible tool for proteomics data quantitative analysis

Chang, C.; Guo, C.; Ding, Y.; Xu, K.; Han, M.; He, F.; Zhu, Y.

10.1101/332957 — bioinformatics — Posted on 2018-05-30

244 THE ROLE OF DENDRITIC BRAIN-DERIVED NEUROTROPHIC FACTOR TRANSCRIPTS ON ALTERED INHIBITORY CIRCUITRY IN DEPRESSION

Oh, H.; Piantadosi, S. C.; Rocco, B. R.; Lewis, D. A.; Watkins, S. C.; Sibille, E.

10.1101/333294 — neuroscience — Posted on 2018-05-30

245 Face Viewing Behavior Predicts Multisensory Gain During Speech Perception

Rennig, J.; Wegner-Clemens, K.; Beauchamp, M. S.

10.1101/331306 — neuroscience — Posted on 2018-05-30

246 Genome-wide discovery of epistatic loci affecting antibiotic resistance using evolutionary couplings

Schubert, B.; Maddamsetti, R.; Nyman, J.; Farhat, M. R.; Marks, D. S.

10.1101/325993 — genomics — Posted on 2018-05-30

247 Rare Variant Pathogenicity Triage and Inclusion of Synonymous Variants Improves Analysis of Disease Associations

Dershem, R.; Metpally, R. P. R.; Jeffreys, K.; Krishnamurthy, S.; Smelser, D. T.; Carey, D. J.; Hershfinkel, M.; Robishaw, J. D.; Breitwieser, G. E.

10.1101/272955 — genetics — Posted on 2018-05-30

248 p53 Deletion Rescues Lethal Microcephaly in a Mouse Model with Neural Stem Cell Abscission Defects

Little, J. N.; Dwyer, N. D.

10.1101/272393 — cell biology — Posted on 2018-05-30

249 Loss-of-function in IRF2BPL is associated with neurological phenotypes

Marcogliese, P. C.; Shashi, V.; Spillmann, R. C.; Stong, N.; Rosenfeld, J. A.; Koenig, M. K.; Martinez-Agosto, J. A.; Herzog, M.; Chen, A. H.; Dickson, P. I.; Lin, H. J.; Vera, M. U.; Salamon, N.; Ortiz, D.; Infante, E.; Steyaert, W.; Dermaut, B.; Poppe, B.; Chung, H.-L.; Zuo, Z.; Lee, P.-T.; Kanca, O.; Xia, F.; Yang, Y.; Smith, E. C.; Jasien, J.; Kansagra, S.; Spiridigliozzi, G.; El-Dairi, M.; Lark, R.; Riley, K.; Koeberl, D. D.; Golden-Grant, K.; Program for Undiagnosed Diseases (UD-PrOZA), ; Undiagnosed Diseases Network, ; Yamamoto, S.; Wangler, M. F.; Mirzaa, G.; Hemelsoet, D.; Lee, B.;

10.1101/322495 — genetics — Posted on 2018-05-30

250 Time Lags and Niche Shifts in a Biological Invasion of Hummingbirds

Battey, C. J.

10.1101/329615 — ecology — Posted on 2018-05-30

251 Exploiting Homeostatic Repopulation to Increase DC Vaccine Efficacy in Multiple Myeloma

Gatenbee, C.; Folguera-Blasco, N.; Daneils, C.; Gallaher, J.; Rockne, R. C.; Adams, C.; Nicholson, M.; Maniati, E.; Kennedy, J.; Luddy, K.; Locke, F. L.; Robertson-Tessi, M.

10.1101/049072 — cancer biology — Posted on 2018-05-30

252 Transfer learning for biomedical named entity recognition with neural networks.

Giorgi, J. M.; Bader, G.

10.1101/262790 — bioinformatics — Posted on 2018-05-30

253 Quantitative assessment of cell population diversity in single-cell landscapes

Liu, Q.; Herring, C. A.; Sheng, Q.; Ping, J.; Simmons, A. J.; Chen, B.; Banerjee, A.; Gu, G.; Coffey, R. J.; Shyr, Y.; Lau, K. S.

10.1101/333393 — bioinformatics — Posted on 2018-05-30

254 Drug treatment efficiency depends on the initial state of activation in nonlinear pathways

Doldan-Martelli, V. L.; Miguez, D. G.

10.1101/153981 — systems biology — Posted on 2018-05-30

255 Differential valuation and learning from social and non-social cues in Borderline Personality Disorder

Fineberg, S. K.; Leavitt, J.; Stahl, D. S.; Kronemer, S.; Landry, C.; Alexander-Bloch, A.; Hunt, L.; Corlett, P.

10.1101/305938 — neuroscience — Posted on 2018-05-30

256 Differential impact of reward and punishment on functional connectivity after skill learning

Steel, A.; Silson, E. H.; Stagg, C. J.; Baker, C. I.

10.1101/243899 — neuroscience — Posted on 2018-05-30

257 Refresh my memory: Episodic memory reinstatements intrude on working memory maintenance

Hoskin, A. N.; Bornstein, A. M.; Norman, K. A.; Cohen, J. D.

10.1101/170720 — animal behavior and cognition — Posted on 2018-05-30

258 Crowdsourcing Image Analysis for Plant Phenomics to Generate Ground Truth Data for Machine Learning

Zhou, N.; Siegel, Z. D.; Zarecor, S.; Lee, N.; Campbell, D. A.; Andorf, C. M.; Nettleton, D.; Lawrence-Dill, C. J.; Ganapathysubramanian, B.; Kelly, J. W.; Friedberg, I.

10.1101/265918 — plant biology — Posted on 2018-05-30

259 Data-based, synthesis-driven: setting the agenda for computational ecology

Poisot, T.; Labrie, R.; Larson, E.; Rahlin, A.

10.1101/150128 — ecology — Posted on 2018-05-30

260 Analysis of heat-induced protein aggregation in human mitochondria

Wilkening, A.; Rüb, C.; Sylvester, M.; Voos, W.

10.1101/253153 — cell biology — Posted on 2018-05-30

261 Structural basis for sigma-1 receptor ligand recognition

Schmidt, H. R.; Betz, R. M.; Dror, R. O.; Kruse, A. C.

10.1101/333765 — pharmacology and toxicology — Posted on 2018-05-30

262 Extracellular Degradation into Adenosine and the Activities of Adenosine Kinase and AMPK Mediate Extracellular NAD+-produced increases in the Adenylate Pool of BV2 Microglia under Basal Conditions

Zhang, J.; Wang, C.; Wu, D.; Ying, W.

10.1101/334268 — cell biology — Posted on 2018-05-30

263 Intracellular FMRpolyG-HSP70 complex: Possible use as biochemical marker of Fragile X Tremor Ataxia Syndrome

Bonapace, G.; Gullace, R.; Concolino, D.; Iannello, G.; Procopio, R.; Gagliardi, M.; Arabia, G.; Barbagallo, G.; Lupo, A.; Manfredini, L. I.; Annesi, G.; Quattrone, A.

10.1101/278416 — cell biology — Posted on 2018-05-30

264 Transcriptome-wide analysis of auxin-induced carotenoid accumulation in Chlorella microalgae

Alsenani, F.; Wass, T.; Ma, R.; Eltanahy, E.; Netzel, M.; Schenk, P. M.

10.1101/334102 — plant biology — Posted on 2018-05-30

265 Chromatin immunoprecipitation-sequencing and RNA-sequencing for complex and low-abundance tree buds

Vimont, N.; Schoepfer, D.; Roudier, F.; Dirlewanger, E.; Wigge, P. A.; Wenden, B.; Cortijo, S.

10.1101/334474 — plant biology — Posted on 2018-05-30

266 De novo computational RNA modeling into cryoEM maps of large ribonucleoprotein complexes

Kappel, K.; Liu, S.; Larsen, K. P.; Skiniotis, G.; Puglisi, E. V.; Puglisi, J. D.; Zhou, Z. H.; Zhao, R.; Das, R.

10.1101/332791 — biophysics — Posted on 2018-05-30

267 Tox_(R)CNN: Deep Learning-Based Nuclei Profiling tool For Drug Toxicity Screening

Jimenez-Carretero, D.; Abrishami, V.; Fernandez-de-Manuel, L.; Palacios, I.; Quilez-Alvarez, A.; Diez-Sanchez, A.; del Pozo, M. A.; Montoya, M. C.

10.1101/334557 — pharmacology and toxicology — Posted on 2018-05-30

268 Variation at the TRIM11 locus modifies Progressive Supranuclear Palsy phenotype

10.1101/333195 — neuroscience — Posted on 2018-05-30

269 Sex differences along the Autism Continuum: A twin study of brain structure

Cauvet, E.; van't Westeinde, A.; Toro, R.; Kuja-Halkola, R.; Neufeld, J.; Mevel, K.; Bölte, S.

10.1101/330225 — neuroscience — Posted on 2018-05-30

270 The Human RNA-Binding Proteome and Its Dynamics During Arsenite-Induced Translational Arrest

Trendel, J.; Schwarzl, T.; Prakash, A.; Bateman, A.; Hentze, M. W.; Krijgsveld, J.

10.1101/329995 — molecular biology — Posted on 2018-05-30

271 Complex interbacterial interactions in mixed biofilms as a key determinant of their antimicrobial treatment efficacy

Kayumov, A. R.; Trizna, E. J.; Yarullina, M. N.; Akhatova, F. S.; Rozhina, E. V.; Fakhrullin, R. F.; Khabibrakhmanova, A. M.; Kurbangalieva, A. R.; Bogachev, M. I.

10.1101/334516 — microbiology — Posted on 2018-05-30

272 Cost-efficient high throughput capture of museum arthropod specimen DNA using PCR-generated baits

Knyshov, A.; Gordon, E. R. L.; Weirauch, C.

10.1101/333799 — evolutionary biology — Posted on 2018-05-30

273 Statistical Investigations of Protein Residue Direct Couplings

Neuwald, A. F.; Altschul, S. F.

10.1101/334540 — bioinformatics — Posted on 2018-05-30

274 Humoral immune response to adenovirus induce tolerogenic bystander dendritic cells that promote generation of regulatory T cells

Kremer, E. J.; Tran, T. T. P.; Eichholz, K.; Amelio, P.; Moyer, C.; Nemerow, G. R.; Perreau, M.; Mennechet, F. J.

10.1101/334508 — microbiology — Posted on 2018-05-30

275 Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing

Cortes-Ciriano, I.; Lee, J.-K.; Xi, R.; Jain, D.; Jung, Y. L.; Yang, L.; Gordenin, D.; Klimczak, L. J.; Zhang, C.-Z.; Pellman, D. S.; Park, P. J.; PCAWG Structural Variation Working Group, ; ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Network,

10.1101/333617 — genomics — Posted on 2018-05-30

276 Genetic variant pathogenicity prediction trained using large-scale disease specific clinical sequencing datasets

Evans, P.; Wu, C.; Lindy, A.; McKnight, D.; Lebo, M.; Sarmady, M.; Abou Tayoun, A.

10.1101/334235 — genomics — Posted on 2018-05-30

277 Cryptic Native American ancestry recapitulates population-specific migration and settlement of the continental United States

Jordan, I. K.; Rishishwar, L.; Conley, A. B.

10.1101/333609 — genetics — Posted on 2018-05-30

278 GWAS meta-analysis highlights the hypothalamic-pituitary-gonadal axis (HPG axis) in the genetic regulation of menstrual cycle length

Laisk, T.; Kukushkina, V.; Palmer, D.; Laber, S.; Chen, C.-Y.; Ferreira, T.; Rahmioglu, N.; Zondervan, K.; Becker, C.; Smoller, J. W.; Lippincott, M.; Salumets, A.; Granne, I.; Seminara, S.; Neale, B.; Magi, R.; Lindgren, C. M.

10.1101/333708 — genetics — Posted on 2018-05-30

279 Ancient ancestry informative markers for identifying fine-scale ancient population structure in Eurasians

Esposito, U.; Das, R.; Pirooznia, M.; Elhaik, E.

10.1101/333690 — genetics — Posted on 2018-05-30

280 sppIDer: a species identification tool to investigate hybrid genomes with high-throughput sequencing

Langdon, Q. K.; Peris, D.; Kyle, B.; Hittinger, C. T.

10.1101/333815 — evolutionary biology — Posted on 2018-05-30

281 Population structure promotes the evolution of costly sex in artificial gene networks

Whitlock, A. O. B.; Azevedo, R. B.; Burch, C. L.

10.1101/333377 — evolutionary biology — Posted on 2018-05-30

282 A mosaic of independent innovations involving eyes shut are critical for the evolutionary transition from closed to open rhabdoms

Zelhof, A.; Mahato, S.; Nie, J.; Plachetzki, D.

10.1101/334532 — evolutionary biology — Posted on 2018-05-30

283 Genetic Modifiers of Pathogenic LRRK2 G2019S Neurodegeneration in Drosophila

Lavoy, S.; Chittoor-Vinod, V.; Chow, C.; Martin, I.

10.1101/331991 — genetics — Posted on 2018-05-30

284 Genomic Analysis of a Transcriptional Networks Directing Progression of Cell States During MGE development.

Sandberg, M.; Taher, L.; Hu, J.; Black, B. L.; Nord, A. S.; Rubenstein, J. L. R.

10.1101/329797 — developmental biology — Posted on 2018-05-30

285 High-order interactions dominate the functional landscape of microbial consortia

Sanchez-Gorostiaga, A.; Bajic, D.; Osborne, M. L.; Poyatos, J. F.; Sanchez, A.

10.1101/333534 — ecology — Posted on 2018-05-29

286 Hmgcr promotes a long-range signal to attract germ cells which is aided by Wunens but independent of hh

Kenwrick, K.; Mukherjee, A.; Renault, A.

10.1101/333575 — developmental biology — Posted on 2018-05-29

287 Re-targeting of macroH2A following mitosis to cytogenetic-scale heterochromatic domains

Sato, H.; Wu, B.; Delahaye, F.; Singer, R. H.; Greally, J.

10.1101/333468 — biochemistry — Posted on 2018-05-29

288 BPIFB3 facilitates flavivirus infection by controlling RETREG1-dependent reticulophagy

Evans, A. S.; Lennemann, N. J.; Fan, K. m.; Coyne, C. B.

10.1101/333435 — microbiology — Posted on 2018-05-29

289 Expression-based analyses indicate a central role for hypoxia in driving tumor plasticity through microenvironment remodeling and chromosomal instability

Jing, A.; Vizeacoumar, F. S.; Parameswaran, S.; Haave, B.; Cunningham, C. E.; Wu, Y.; Arnold, R.; Bonham, K.; Freywald, A.; Han, J.; Vizeacoumar, F. J.

10.1101/333633 — cancer biology — Posted on 2018-05-29

290 Aggregation of Vibrio cholerae by cationic polymers enhances quorum sensing but over-rides biofilm dissipation in response to autoinduction

Perez-Soto, N.; Creese, O.; Fernandez-Trillo, F.; Krachler, A.-M.

10.1101/333823 — microbiology — Posted on 2018-05-29

291 The influence of prosocial priming on visual perspective taking and automatic imitation

Newey, R.; Koldewyn, K.; Ramsey, R.

10.1101/333880 — neuroscience — Posted on 2018-05-29

Zhao, J.; Yifang, W.; Licong, A.

10.1101/333898 — neuroscience — Posted on 2018-05-29

293 Does a history of sexual and physical childhood abuse contribute to HIV infection risk in adulthood? A study among post-natal women in Harare, Zimbabwe

Shamu, S.; Shamu, P.; Zarowsky, C.; Temmerman, M.; Shefer, T.; Abrahams, N.

10.1101/333872 — epidemiology — Posted on 2018-05-29

294 Prolonged culture of primary human keratinocytes isolated from suction blisters

Anderson, E. D.; Sastalla, I.; Earland, N. J.; Mahnaz, M.; Moore, I. N.; Otaizo-Carrasquero, F.; Myers, T. G.; Myles, C. A.; Datta, S. K.; Myles, I. A.

10.1101/333831 — cell biology — Posted on 2018-05-29

295 Stretching combined with repetitive small length changes of the plantar flexor muscles enhances their passive extensibility for longer duration than conventional static stretching, while not compromising strength

Ikeda, N.; Inami, T.; Kawakami, Y.

10.1101/333864 — physiology — Posted on 2018-05-29

296 SCRUTINIZATION OF SOIL SEED BANK FROM ARID TO MESIC HABITATS OF DERA GHAZI KHAN

Gulshan, A. B.; Bakhsh, A.; Irfan, S. M.; Hussain, S.; Bhatti, K. H.; Atta, M. I.; Dr. Ali Bakhsh, Dr. Kizar Hayat Bhatti, Mr. Sabir Hussain, Mr. Imran Artta,

10.1101/333856 — ecology — Posted on 2018-05-29

297 Deep feature selection for Identification of Essential Proteins of Learning and Memory in Mouse Model of Down Syndrome

Abdeldayem, S. S.; Elhefnawi, M.

10.1101/333849 — bioinformatics — Posted on 2018-05-29

298 Endogenous miRNA sponges mediate the generation of oscillatory dynamics for a non-coding RNA network

Dhawan, A.; Harris, A. L.; Buffa, F. M.; Scott, J. G.

10.1101/292029 — systems biology — Posted on 2018-05-29

299 Enrichment of rare protein truncating variants in amyotrophic lateral sclerosis patients

Farhan, S. M. K.; Howrigan, D. P.; Abbott, L.; Byrnes, A.; Churchhouse, C.; Phatnani, H.; Smith, B.; Topp, S.; Rampersaud, E.; Wu, G.; Wuu, J.; Gubitz, A.; Kilm, J.; Mordes, D.; Ghosh, S.; CReATe Consortium, ; FALS Consortium, ; ALSGENS Consortium, ; Eggan, K.; Rademakers, R.; McCauley, J.; Schule, R.; Zuchner, S.; Benatar, M.; Taylor, J. P.; Nalls, M.; Traynor, B.; Shaw, C.; Goldstein, D.; Harms, M.; Daly, M.; Neale, B.

10.1101/307835 — genomics — Posted on 2018-05-29

300 Thousands of large-scale RNA sequencing experiments yield a comprehensive new human gene list and reveal extensive transcriptional noise

Pertea, M.; Shumate, A.; Pertea, G.; Varabyou, A.; Chang, Y.-C.; Madugundu, A. K.; Pandey, A.; Salzberg, S.

10.1101/332825 — genomics — Posted on 2018-05-29

301 Natural variation in stomata size contributes to the local adaptation of water-use efficiency in Arabidopsis thaliana

Dittberner, H.; Korte, A.; Mettler-Altmann, T.; Weber, A.; Monroe, G.; de Meaux, J.

10.1101/253021 — plant biology — Posted on 2018-05-29

302 Protein biocargo of citrus fruit juice sac cells-derived vesicles reveals heterogeneous transport and extracellular vesicle subpopulations

Pocsfalvi, G.; Turiak, L.; Ambrosone, A.; Del Gaudio, P.; Puska, G.; Fiume, I.; Silvestre, T.; Vekey, K.

10.1101/321240 — plant biology — Posted on 2018-05-29

303 Extended regions of suspected mis-assembly in the rat reference genome

Ramdas, S.; Ozel, A. B.; Holl, K.; Mandell, M.; Solberg Woods, L.; Li, J. Z.

10.1101/332932 — genomics — Posted on 2018-05-29

304 Molecular mechanism of symmetry breaking in a 3D model of a human epiblast

Simunovic, M.; Metzger, J. J.; Etoc, F.; Yoney, A.; Ruzo, A.; Martyn, I.; Croft, G.; Brivanlou, A. H.; Siggia, E. D.

10.1101/330704 — developmental biology — Posted on 2018-05-29

305 Unbiased dynamic characterization of RNA-protein interactions by OOPS

M. L. Queiroz, R.; Smith, T.; Villanueva, E.; Monti, M.; Pizzinga, M.; Marti-Solano, M.; Mirea, D.-M.; Ramakrishna, M.; F. Harvey, R.; Dezi, V.; Degroeve, S.; Martens, L.; H. Thomas, G.; E. Willis, A.; S. Lilley, K.

10.1101/333336 — cell biology — Posted on 2018-05-29

306 Peri-saccadic perceptual mislocalization is different for upward saccades

Grujic, N.; Brehm, N.; Gloge, C.; Zhuo, W.; Hafed, Z. M.

10.1101/333112 — neuroscience — Posted on 2018-05-29

307 The maternal hormone in the male brain: sexually dimorphic distribution of prolactin signalling in the mouse brain

Salais-Lopez, H.; Agustin-Pavon, C.; Lanuza, E.; Martinez Garcia, F.

10.1101/333161 — neuroscience — Posted on 2018-05-29

308 Otolith microchemistry identifies diadromous populations of Patagonian river fishes

Alo, D.; Correa, C.; Samaniego, H.; Krabbenhoft, C. A.; Turner, T. F.

10.1101/174656 — ecology — Posted on 2018-05-29

309 Multi-modal meta-analysis of 1494 hepatocellular carcinoma samples reveals vast impacts of consensus driver genes on phenotypes

Chaudhary, K.; Poirion, O. B.; Lu, L.; Huang, S.; Ching, T.; Garmire, L. X.

10.1101/166090 — bioinformatics — Posted on 2018-05-29

310 Ethanol-Mediated Compaction and Crosslinking Enhance Mechanical Properties and Degradation Resistance While Maintaining Cytocompatibility of a Nucleus Pulposus Scaffold

Walters, J. D.; Gill, S. S.; Mercuri, J. J.

10.1101/333179 — bioengineering — Posted on 2018-05-29

311 Potential combined pro-cognitive, anxiolytic and antidepressant properties of novel GABAA receptor positive modulators with preferential efficacy at the α5-subunit

Prevot, T. D.; Li, G.; Vidojevic, A.; Misquitta, K. A.; Fee, C.; Santrac, A.; Knutson, D. E.; Stephen, M. R.; Kodali, R.; Zahn, N. M.; Arnold, L.; Scholze, P.; Fisher, J. L.; Markovic, B. D.; Banasr, M.; Cook, J. M.; Savic, M.; Sibille, E.

10.1101/332908 — pharmacology and toxicology — Posted on 2018-05-29

312 Fine Endmesolithic Fish Caviar Meal Discovered by Proteomics of Foodcrusts

Shevchenko, A.; Schuhmann, A.; Wetzel, G.

10.1101/332882 — paleontology — Posted on 2018-05-29

313 Dynamic expression of risk genes for schizophrenia and bipolar disorder across development

Clifton, N. E.; Hannon, E.; Di Florio, A.; Thomas, K. L.; Holmans, P. A.; Walters, J. T.; O'Donovan, M. C.; Owen, M. J.; Pocklington, A. J.; Hall, J.

10.1101/333104 — neuroscience — Posted on 2018-05-29

314 Meta-analysis of Reward Processing in Major Depressive Disorder: Distinct Abnormalities within the Reward Circuit?

Ng, T. H.; Alloy, L. B.; Smith, D. V.

10.1101/332981 — neuroscience — Posted on 2018-05-29

315 Driving the expression of the Salmonella enterica sv Typhimurium flagellum using flhDC from Escherichia coli results in key regulatory and cellular differences.

Albanna, A.; Sim, M.; Hoskisson, P.; Gillespie, C.; Rao, C. V.; Aldridge, P. D.

10.1101/333146 — microbiology — Posted on 2018-05-29

316 Physical interactions reduce the power of natural selection in growing yeast colonies

Giometto, A.; Nelson, D. R.; Murray, A. W.

10.1101/332700 — biophysics — Posted on 2018-05-29

317 VARAN-GIE: Curation of Genomic Interval Sets

Popitsch, N.

10.1101/333096 — bioinformatics — Posted on 2018-05-29

318 Pupation site preference selection in Drosophila jambulina

Ramniwas, S.; Kumar, G.

10.1101/333088 — animal behavior and cognition — Posted on 2018-05-29

319 CMT3 and SUVH4/KYP silence the exonic retroelement Evelknievel to allow for reconstitution of CMT1 mRNA

Yadav, N.; Khadka, J.; Zemach, A.; Grafi, G.

10.1101/332239 — plant biology — Posted on 2018-05-29

320 Differential effects of extended exercise and memantine treatment on adult neurogenesis in male and female rats

Cahill, S. P.; Cole, J. D.; Yu, R. Q.; Clemans-Gibbon, J.; Snyder, J. S.

10.1101/332890 — neuroscience — Posted on 2018-05-29

321 Rapid Therapeutic Recommendations in the Context of a Global Public Health Crisis using Translational Bioinformatics Approaches: A proof-of-concept study using Nipah Virus Infection

Shameer, K.; Johnson, K. W.; Readhead, B.; Glicksberg, B.; McCallum, C.; R, A.; Hirsch, J.; Bock, K.; Chelico, J.; Hajizadeh, N.; Oppenheim, M.; Dudley, J.

10.1101/333021 — microbiology — Posted on 2018-05-29

322 Temporal Viral Genome-Protein Interactions Define Distinct Stages of Productive Herpesviral Infection

Dembowski, J. A.; DeLuca, N. A.

10.1101/331272 — microbiology — Posted on 2018-05-29

323 Extended regions of suspected mis-assembly in the rat reference genome

Ramdas, S.; Ozel, A. B.; Holl, K.; Mandell, M.; Solberg Woods, L.; Li, J. Z.

10.1101/332932 — genomics — Posted on 2018-05-29

324 Variation of mutational burden in healthy human tissues suggests non-random strand segregation and allows measuring somatic mutation rates

Werner, B.; Sottoriva, A.

10.1101/332734 — cancer biology — Posted on 2018-05-29

325 The structure of the Pro-domain of mouse proNGF in contact with the NGF domain

Yan, R.; Yalinca, H.; Paoletti, F.; Gobbo, F.; Marchetti, L.; Kuzmanic, A.; Lamba, D.; Gervasio, F. L.; Konarev, P. V.; Cattaneo, A.; Pastore, A.

10.1101/333070 — biophysics — Posted on 2018-05-29

326 Body size-dependent energy storage causes Kleibers law scaling of the metabolic rate in planarians

Rink, J. C.; Thommen, A.; Werner, S.; Frank, O.; Philipp, J.; Knittelfelder, O.; Quek, Y.; Fahmy, K.; Shevchenko, A.; Friedrich, B. M.; Jülicher, F.

10.1101/332916 — biophysics — Posted on 2018-05-29

327 Identification and design of vinyl sulfone inhibitors against Cryptopain1, which is a cysteine protease from cryptosporidiosis causingCryptosporidium parvum

Banerjee, A.; Abagyan, R.

10.1101/332965 — bioinformatics — Posted on 2018-05-29

328 Combinatorial approach for complex disorder prediction: Case Study Of Neurodevelopmental Disorders

Huynh, L.; Hormozdiari, F.

10.1101/129775 — bioinformatics — Posted on 2018-05-29

329 Effect of automation on the accuracy of alchemical free energy calculation protocols

Granadino-Roldan, J. M.; Mey, A. S. J. S.; Perez, J. J.; Bosisio, S.; Rubio-Martinez, J.; Michel, J.

10.1101/333120 — molecular biology — Posted on 2018-05-29

330 Insulin sensitivity and PIP3 turnover in Drosophila are regulated by phosphatidylinositol 5 phosphate 4-kinase.

Sharma, S.; Mathre, S.; Visvanathan, R.; Shinde, D.; Raghu, P.

10.1101/333153 — cell biology — Posted on 2018-05-29

331 Assessment and Optimization of Collective Variables for Protein Conformational Landscape: GB1 β-hairpin as a Case Study

Ahalawat, N.; Mondal, J.

10.1101/333047 — biophysics — Posted on 2018-05-29

332 Analyzing whole genome bisulfite sequencing data from highly divergent genotypes

Wulfridge, P.; Langmead, B.; Feinberg, A. P.; Hansen, K. D.

10.1101/076844 — genomics — Posted on 2018-05-29

333 Analysis of the transcriptional logic governing differential spatial expression in Hh target genes

Sanchez, O.; Cambon, M.

10.1101/333260 — systems biology — Posted on 2018-05-29

334 Mutation load dynamics during environmentally-driven range shifts

Gilbert, K. J.; Peischl, S.; Excoffier, L.

10.1101/333252 — evolutionary biology — Posted on 2018-05-29

335 Estimating heterogeneous treatment effects by balancing heterogeneity and fitness

Zhang, W.; Le, T.; Liu, L.; Li, J.

10.1101/333278 — bioinformatics — Posted on 2018-05-29

336 Evaluation of a guideline developed to reduce HIV-related stigma and discrimination in healthcare settings and establishing consensus

Feyissa, G. T.; Lockwood, C.; Woldie, M.; Munn, Z.; no,

10.1101/333229 — scientific communication and education — Posted on 2018-05-29

337 Opinions of 12 to 13-year-olds in Austria and Australia on the worry, cause and imminence of Climate Change

Harker-Schuch, I. E.; Mills, F.; Lade, S.; Colvin, R.

10.1101/333237 — scientific communication and education — Posted on 2018-05-29

338 Identifying individual risk rare variants using protein structure-guided local tests (POINT)

Marceau West, R.; Lu, W.; Rotroff, D. M.; Kuenemann, M.; Chang, S.-M.; Wagner, M. J.; Buse, J. B.; Motsinger-Reif, A.; Fourches, D.; Tzeng, J.-Y.

10.1101/333245 — bioinformatics — Posted on 2018-05-29

339 Inductive reasoning differs between taxonomic and thematic contexts: Electrophysiological evidence

Liu, F.; Han, J.; Zhang, L.; Li, F.

10.1101/333211 — neuroscience — Posted on 2018-05-29

340 Transcriptome analysis of early stage of neurogenesis reveals regulatory gene network for preplate neuron differentiation and CR cell specification

Li, J.; Sun, L.; Peng, X.-L.; Qi, S.-J.; Shen, Q.

10.1101/331900 — neuroscience — Posted on 2018-05-29

341 Coarse-grained modeling for structure, stability and flexibility of double stranded RNAs in salt solutions

Jin, L.; Shi, Y.-Z.; Feng, C.-J.; Tan, Y.-L.

10.1101/332676 — biophysics — Posted on 2018-05-29

342 Cytokine profile in human olfactory cleft mucus and associated changes in olfactory function

Wang, H.; Jaen, C.; Yoshikawa, K.; Haneoka, M.; Saito, N.; Nakamura, J.; Adappa, N. D.; Cohen, N. A.; Dalton, P.

10.1101/332395 — neuroscience — Posted on 2018-05-28

343 Locus coeruleus integrity preserves memory performance across the adult life span

Dahl, M. J.; Mather, M.; Duezel, S.; Bodammer, N. C.; Lindenberger, U.; Kuehn, S.; Werkle-Bergner, M.

10.1101/332098 — neuroscience — Posted on 2018-05-28

344 Low fidelity assembly of influenza A virus promotes escape from host cells

Vahey, M. D.; Fletcher, D. A.

10.1101/332650 — microbiology — Posted on 2018-05-28

345 Osmolality controls the expression of cathelicidin antimicrobial peptide in human macrophages

Li, Y.; Johnsen, I. B.

10.1101/332635 — immunology — Posted on 2018-05-28

346 Contribution of rare and common variants to intellectual disability in a high-risk population sub-isolate of Northern Finland

Kurki, M. I.; Saarentaus, E.; Pietilainen, O.; Gormley, P.; Lal, D.; Kerminen, S.; Torniainen-Holm, M.; Hamalainen, E.; Rahikkala, E.; Keski-Filppula, R.; Rauhala, M.; Korpi-Heikkila, S.; Komulainen-Ebrahim, J.; Helander, H.; Vieira, P.; Salomaa, V.; Pirinen, M.; Suvisaari, J.; Moilanen, J. S.; Korkko, J.; Kuismin, O.; Daly, M. J.; Palotie, A.

10.1101/332023 — genetics — Posted on 2018-05-28

347 Characteristics and origins of non-functional Pm21 alleles in Dasypyrum villosum and wheat genetic stocks

Zhu, S.; He, H.

10.1101/332841 — plant biology — Posted on 2018-05-28

348 Thousands of large-scale RNA sequencing experiments yield a comprehensive new human gene list and reveal extensive transcriptional noise

Pertea, M.; Shumate, A.; Pertea, G.; Varabyou, A.; Chang, Y.-C.; Madugundu, A. K.; Pandey, A.; Salzberg, S.

10.1101/332825 — genomics — Posted on 2018-05-28

349 Sibling rivalry: Males with more brothers develop larger testes

Fisher, H. S.; Hook, K. A.; Weber, W. D.; Hoekstra, H. E.

10.1101/332775 — evolutionary biology — Posted on 2018-05-28

350 Soil nutrient stoichiometry affects the initial response of microbial community to trophic perturbation.

Mise, K.; Maruyama, R.; Miyabara, Y.; Kunito, T.; Senoo, K.; Otsuka, S.

10.1101/323709 — ecology — Posted on 2018-05-28

351 Myosin-driven fragmentation of actin filaments triggers contraction of a disordered actin network

Matsuda, K.; Kobayashi, T.; Sugawa, M.; Koiso, Y.; Toyoshima, Y. Y.; Yajima, J.

10.1101/332684 — biophysics — Posted on 2018-05-28

352 ERVcaller: Identifying and genotyping non-reference unfixed endogenous retroviruses (ERVs) and other transposable elements (TEs) using next-generation sequencing data

Chen, X.; Li, D.

10.1101/332833 — bioinformatics — Posted on 2018-05-28

353 Machine characterization of rat toxin responses identifies disease states, tolerance mechanisms and organ to whole-body communication

Shimada, K.; Mitchison, T.

10.1101/322446 — systems biology — Posted on 2018-05-28

354 Intraspecific variation and warming have comparable effects on eco-evolutionary dynamics.

Raffard, A.; Cucherousset, J.; Santoul, F.; Di Gesu, L.; Blanchet, S.

10.1101/332619 — ecology — Posted on 2018-05-28

355 The Portal Project: a long-term study of a Chihuahuan desert ecosystem

Ernest, S. M.; Yenni, G. M.; Allington, G.; Bledsoe, E.; Christensen, E.; Diaz, R.; Goheen, J.; Guo, Q.; Heske, E.; Kelt, D.; Meiners, J.; Munger, J.; Restrepo, C.; Samson, D.; Schutzenhofer, M.; Skupski, M.; Supp, S.; Thibault, K.; Taylor, S.; White, E.; Davidson, D.; Brown, J. H.; Valone, T. J.

10.1101/332783 — ecology — Posted on 2018-05-28

356 Limits for resolving tandem mass tag reporter ions with identical integer mass using phase constrained spectrum deconvolution

Kelstrup, C. D.; Aizikov, K.; Batth, T. S.; Kreutzman, A.; Grinfeld, D.; Lange, O.; Mourad, D.; Makarov, A.; Olsen, J. V.

10.1101/332668 — biochemistry — Posted on 2018-05-28

357 Imaging of single mRNA translation repression reveals diverse interactions with mRNP granules

Moon, S. L.; Morisaki, T.; Khong, A.; Lyon, K.; Parker, R.; Stasevich, T. J.

10.1101/332692 — molecular biology — Posted on 2018-05-28

358 The Wright-Fisher Site Frequency Spectrum as a Perturbation of the Coalescent’s

Melfi, A. M.; Viswanath, D.

10.1101/332817 — genetics — Posted on 2018-05-28

359 Modeling meiotic homolog pairing: increased fidelity from a tug of war between telomere forces and a pairing-based Brownian ratchet

Marshall, W. F.; Fung, J. C.

10.1101/332767 — biophysics — Posted on 2018-05-28

360 Crowdsourcing Image Analysis for Plant Phenomics to Generate Ground Truth Data for Machine Learning

Zhou, N. D.; Siegel, Z. D.; Zarecor, S.; Lee, N.; Campbell, D. A.; Andorf, C. M.; Nettleton, D.; Lawrence-Dill, C. J.; Ganapathysubramanian, B.; Kelly, J. W.; Friedberg, I.

10.1101/265918 — plant biology — Posted on 2018-05-28

361 PySight: plug and play photon counting for fast intravital microscopy

Har-Gil, H.; Golgher, L.; Israel, S.; Kain, D.; Cheshnovsky, O.; Parnas, M.; Blinder, P.

10.1101/316125 — neuroscience — Posted on 2018-05-28

362 Sparse recurrent excitatory connectivity in the microcircuit of the adult mouse and human cortex

Seeman, S. C.; Campagnola, L.; Davoudian, P. A.; Hoggarth, A.; Hage, T. A.; Bosma-Moody, A.; Baker, C. A.; Lee, J. H.; Mihalas, S.; Teeter, C.; Ko, A. L.; Ojemann, J. G.; Gwinn, R. P.; Silbergeld, D. L.; Cobbs, C.; Phillips, J.; Lein, E.; Murphy, G.; Koch, C.; Zeng, H.; Jarsky, T.

10.1101/292706 — neuroscience — Posted on 2018-05-28

363 Animal models with group-specific additive genetic variances: extending genetic group models

Muff, S.; Niskanen, A. K.; Saatoglu, D.; Keller, L. F.; Jensen, H.

10.1101/331157 — evolutionary biology — Posted on 2018-05-28

364 Dynamic control of proinflammatory cytokines Il-1β and Tnf-α by macrophages is necessary for functional spinal cord regeneration in zebrafish

Tsarouchas, T. M.; Wehner, D.; Cavone, L.; Munir, T.; Keatinge, M.; Lambertus, M.; Underhill, A.; Barrett, T.; Kassapis, E.; Ogryzko, N.; Feng, Y.; van Ham, T. J.; Becker, T.; Becker, C. G.

10.1101/332197 — developmental biology — Posted on 2018-05-28

365 Prioritizing network communities

Zitnik, M.; Sosic, R.; Leskovec, J.

10.1101/315903 — bioinformatics — Posted on 2018-05-28

366 A note on measuring natural selection on principal component scores

Chong, V. K.; Fung, H. F.; Stinchcombe, J. R.

10.1101/212258 — evolutionary biology — Posted on 2018-05-28

367 Migration alters oscillatory dynamics and promotes survival in connected bacterial populations

Gokhale, S.; Conwill, A.; Ranjan, T.; Gore, J.

10.1101/223487 — ecology — Posted on 2018-05-28

368 Network Architecture and Mutational Sensitivity of the C. elegans Metabolome

Johnson, L. M.; Chandler, L. M.; Davies, S. K.; Baer, C. F.

10.1101/181511 — systems biology — Posted on 2018-05-28

369 Massive osteopetrosis caused by giant, non-functional osteoclasts in R51Q SNX10 mutant mice

Barnea, M.; Stein, M.; Winograd-Katz, S.; Shalev, M.; Arman, E.; Brenner, O.; Thalji, F.; Kanaan, M.; Elinav, H.; Stepensky, P.; Geiger, B.; Tuckermann, J.; Elson, A.

10.1101/332551 — cell biology — Posted on 2018-05-28

370 UPA-Seq: Prediction of Functional LncRNAs Using Differential Sensitivity to UV Crosslinking

Komatsu, T.; Mito, M.; Fujii, K.; Iwasaki, S.; Nakagawa, S.

10.1101/332080 — molecular biology — Posted on 2018-05-28

371 Asymmetrical interference between number and item size perception provide evidence for a domain specific impairment in dyscalculia

Castaldi, E.; Mirassou, A.; Dehaene, S.; Piazza, M.; Eger, E.

10.1101/332155 — neuroscience — Posted on 2018-05-28

372 Thermosipho spp. immune system differences affect variation in genome size and geographical distributions

Haverkamp, T. H. A.; Geslin, C.; Lossouarn, J.; Podosokorskaya, O.; Kublanov, I.; Nesbo, C. L.

10.1101/331215 — microbiology — Posted on 2018-05-28

373 Genetic characterization of invasive house mouse populations on small islands

Morgan, A. P.; Didion, J. P.; Hughes, J. J.; Searle, J. B.; Jolley, W. J.; Campbell, K. J.; Threadgill, D. W.; Pardo Manuel de Villena, F.

10.1101/332064 — genetics — Posted on 2018-05-28

374 Preferred walking speed on rough terrain; is it all about energetics?

Gast, K.; Riemer, R.; Kram, R.

10.1101/332106 — evolutionary biology — Posted on 2018-05-28

375 Role of long-range aromatic clique and community in protein stability.

Mahanta, D. P.; Bhardwaj, D. A.; Siva Reddy, P. V.; Ramakumar, P. S.

10.1101/319160 — systems biology — Posted on 2018-05-28

376 Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis

Thiel, D. A.; Djurdjevac Conrad, N.; Peschutter, R. X.; Siebert, H.; Marsico, A.

10.1101/331256 — systems biology — Posted on 2018-05-28

377 Developmental \"awakening\" of primary motor cortex to the sensory consequences of movement

Dooley, J. C.; Blumberg, M. S.

10.1101/331983 — neuroscience — Posted on 2018-05-28

378 Overt social interaction and resting state in autism: core and contextual neural features

Jasmin, K.; Gotts, S.; Xu, Y.; Liu, S.; Riddell, C.; Ingeholm, J.; Kenworthy, L.; Wallace, G. L.; Braun, A. R.; Martin, A.

10.1101/332213 — neuroscience — Posted on 2018-05-28

379 Abnormal microstructural development of the cerebral cortex in neonates with congenital heart disease is associated with impaired cerebral oxygen delivery

Kelly, C.; Christiaens, D.; Batalle, D.; Makropoulos, A.; Cordero-Grande, L.; Steinweg, J. K.; O'Muircheartaigh, J.; Khan, H.; Lee, G.; Victor, S.; Alexander, D.; Zhang, H.; Simpson, J.; Hajnal, J. V.; Edwards, A. D.; Rutherford, M. A.; Counsell, S. J.

10.1101/332247 — neuroscience — Posted on 2018-05-28

380 Activation of the TRKB receptor mediates the panicolytic-like effect of NOS inhibitor aminoguanidine

Ribeiro, D. E.; Casarotto, P.; Spiacci, A.; Fernandes, G. G.; Pinheiro, L. C.; Guimaraes, F. S.; Zangrossi, H.; Tanus-Santos, J. E.; Joca, S. R. L.; Biojone, C.

10.1101/331918 — neuroscience — Posted on 2018-05-28

381 Genetic tools weed out misconceptions of strain reliability in Cannabis sativa: Implications for a budding industry

Schwabe, A.; McGlaughlin, M. E.

10.1101/332320 — molecular biology — Posted on 2018-05-28

382 Identifying Plasmids in Bacterial Genome Assemblies

Hall, B. G.

10.1101/332049 — microbiology — Posted on 2018-05-28

383 Absence of surface IgD does not impair naive B cell homeostasis and memory B cell formation in humans

Nechvatalova, J.; Bartol, S. J. W.; Chovancova, Z.; Boon, L.; Vlkova, M.; van Zelm, M. C.

10.1101/332361 — immunology — Posted on 2018-05-28

384 EROS is required for phagocyte NADPH oxidase function in humans and its deficiency causes Chronic Granulomatous Disease.

Thomas, D.; Charbonnier, L.; Schejtman, A.; Aldhekri, H.; Coomber, E.; Dufficy, E. R.; Beenken, A. E.; Lee, J.; Clare, S.; Speak, A.; Thrasher, A. J.; Santilli, G.; Al-Mousa, H.; Alkuraya, F. S.; Chatila, T.; Smith, K. G.

10.1101/331454 — immunology — Posted on 2018-05-28

385 Physiological predictors of reproductive performance in the European Starling (Sturnus vulgaris): II. Multivariate Analysis

Cohen, A. A.; Paquet, M.; Fowler, M. A.; Legault, V.; Williams, T. D.

10.1101/330290 — ecology — Posted on 2018-05-28

386 Physiological predictors of reproductive performance in the European Starling (Sturnus vulgaris): I. Univariate analysis

Fowler, M. A.; Cohen, A. A.; Paquet, M.; Williams, T. D.

10.1101/332577 — ecology — Posted on 2018-05-28

387 Metastable contacts and structural disorder in the estrogen receptor transactivation domain

Peng, Y.; Cao, S.; Kiselar, J.; Xiao, X.; Hsien, A.; Chen, Y.; Shi, W.; Jiang, W.; Yang, L.; Chance, M.; Surewicz, W.; Buck, M.; Yang, S.

10.1101/332205 — biophysics — Posted on 2018-05-28

388 Prioritizing Small Molecule as Candidates for Drug Repositioning using Machine Learning

Shameer, K.; Johnson, K.; Glicksberg, B. S.; Hodos, R.; Readhead, B.; Tomlinson, M. S.; Dudley, J. T.

10.1101/331975 — bioinformatics — Posted on 2018-05-28

389 Utilising the boundary layer to help restore the connectivity of fish habitats and populations

Watson, J. R.; Goodrich, H. R.; Cramp, R. L.; Gordos, M. A.; Franklin, C. E.

10.1101/332338 — animal behavior and cognition — Posted on 2018-05-28

390 The structure of the genetic code as an optimal graph clustering problem

Blazej, P.; Kowalski, D.; Mackiewicz, D.; Wnetrzak, M.; Aloqalaa, D.; Mackiewicz, P.

10.1101/332478 — systems biology — Posted on 2018-05-28

391 Effective Variations of related Physicochemical Properties of Nucleotides Leading to Amino Acids for Characterizing Genes and Proteins

Sengupta, A.; Pal Choudhury, P.

10.1101/332171 — systems biology — Posted on 2018-05-28

392 Revealing nonlinear neural decoding by analyzing choices

Yang, Q.; Pitkow, X. S.

10.1101/332353 — neuroscience — Posted on 2018-05-28

393 Consortia of anti-nematode fungi and bacteria in the rhizosphere of soybean plants attacked by root-knot nematodes

Toju, H.; Tanaka, Y.

10.1101/332403 — microbiology — Posted on 2018-05-28

394 A novel method for systematic genetic analysis and visualization of phenotypic heterogeneity applied to orofacial clefts

Carlson, J.; Anand, D.; Buxo, C.; Christensen, K.; Deleyiannis, F.; Hecht, J.; Moreno-Uribe, L.; Orioli, I.; Padilla, C.; Shaffer, J.; Vieira, A.; Wehby, G.; Weinberg, S.; Murray, J.; Beaty, T.; Saadi, I.; Lachke, S.; Marazita, M.; Feingold, E.; Leslie, E.

10.1101/332270 — genetics — Posted on 2018-05-28

395 Polygenic adaptation fuels genetic redundancy in Drosophila

Barghi, N.; Tobler, R.; Nolte, V.; Jaksic, A. M.; Mallard, F.; Otte, K.; Dolezal, M.; Taus, T.; Kofler, R.; Schloetterer, C.

10.1101/332122 — evolutionary biology — Posted on 2018-05-28

396 Dynamic control of proinflammatory cytokines Il-1β and Tnf-α by macrophages is necessary for functional spinal cord regeneration in zebrafish

Tsarouchas, T. M.; Wehner, D.; Cavone, L.; Munir, T.; Keatinge, M.; Lambertus, M.; Underhill, A.; Barrett, T.; Kassapis, E.; Ogryzko, N.; Feng, Y.; van Hamm, T. J.; Becker, T.; Becker, C. G.

10.1101/332197 — developmental biology — Posted on 2018-05-28

397 Cooperative induction of ordered peptide and fatty acid aggregates

Riek, R.; Greenwald, J.; Kwiatkowski, W.; Bomba, R.

10.1101/323030 — biophysics — Posted on 2018-05-28

398 Deep Neural Network for Protein Contact Prediction by Weighting Sequences in a Multiple Sequence Alignment

Fukuda, H.; Tomii, K.

10.1101/331926 — bioinformatics — Posted on 2018-05-28

399 Human vicarious trial and error is predictive of spatial navigation performance

Santos-Pata, D.; Verschure, P. F.

10.1101/332189 — animal behavior and cognition — Posted on 2018-05-28

400 UDP-glucose:anthocyanidin 3-O-glucoside-2”-O-glucosyltransferase catalyzes further glycosylation of anthocyanins in purple Ipomoea batatas

Wang, H.; Wang, C.; Fan, W.; Yang, J.; Appelhagen, I.; Wu, Y.; Zhang, P.

10.1101/332486 — plant biology — Posted on 2018-05-28

401 In situ quantification of individual mRNA transcripts in melanocytes discloses gene regulation of relevance to speciation

Wu, C.-C.; Klaesson, A.; Buskas, J.; Ranefall, P.; Mirzazadeh, R.; Söderberg, O.; Wolf, J. B. W.

10.1101/332569 — evolutionary biology — Posted on 2018-05-28

402 From apparent competition to facilitation, impacts of consumer niche construction on the coexistence and stability of consumer-resource communities.

Picot, A.; Monnin, T.; Loeuille, N.

10.1101/332437 — ecology — Posted on 2018-05-28

403 Dynamics of the Previte-Hoffman food web modelwith small immigrations

Hassan, S. S.

10.1101/332387 — ecology — Posted on 2018-05-28

404 Actomyosin dynamics, Bmp and Notch signaling pathways drive apical extrusion of proepicardial cells

Mercader, N.

10.1101/332593 — developmental biology — Posted on 2018-05-28

405 Histological, transcriptomic and in vitro analysis reveal an intrinsic activated state of myogenic precursors in hyperplasic muscle of trout

Jagot, S.; Sabin, N.; Le Cam, A.; Bugeon, J.; Rescan, P.-Y.; Gabillard, J.-C.

10.1101/332585 — cell biology — Posted on 2018-05-28

406 NAT/NCS2-hound: A webserver for the detection and evolutionary classification of prokaryotic and eukaryotic nucleobase-cation symporters of the NAT/NCS2 family.

Chaliotis, A.; Vlastaridis, P.; Ntountoumi, C.; Botou, M.; Yalelis, V.; Lazou, P.; Tatsaki, K.; Mossialos, D.; Frillingos, S.; Amoutzias, G.

10.1101/332452 — bioinformatics — Posted on 2018-05-28

407 ProfPPIdb: pairs of physical protein-protein interactions predicted for entire proteomes

Tran, L.; Hamp, T.; Rost, B.

10.1101/332510 — bioinformatics — Posted on 2018-05-28

408 Exploiting Index Cross-Talk to Modify Variant Calls

Ney, P. M.; Organick, L.; Koscher, K.; Kohno, T.; Ceze, L.

10.1101/332346 — bioengineering — Posted on 2018-05-28

409 Single-molecule imaging of mRNA localization and regulation during the integrated stress response

Wilbertz, J. H.; Voigt, F.; Horvathova, I.; Roth, G.; Zhan, Y.; Chao, J. A.

10.1101/332502 — molecular biology — Posted on 2018-05-28

410 A quantitative framework for investigating the reliability of network construction

Cirtwill, A.; Eklöf, A.; Roslin, T.; Wootton, K.; Gravel, D.

10.1101/332536 — ecology — Posted on 2018-05-28

411 DECODER: A probabilistic approach to integrate big data reveals mitochondrial Complex I as a potential therapeutic target for Alzheimer’s disease

Celik, S.; Russell, J. C.; Pestana, C. R.; Lee, T.-I.; Mukherjee, S.; Crane, P. K.; Keene, D.; Bobb, J. F.; Kaeberlein, M.; Lee, S.-I.

10.1101/302737 — systems biology — Posted on 2018-05-28

412 Synchrony surfacing: epicortical recording of correlated action potentials

Bockhorst, T.; Pieper, F.; Engler, G.; Stieglitz, T.; Galindo Leon, E. E.; Engel, A. K.

10.1101/329342 — neuroscience — Posted on 2018-05-28

413 gwasurvivr: an R package for genome wide survival analysis

Rizvi, A. A.; Karaesmen, E.; Morgan, M.; Preus, L.; Wang, J.; Sovic, M.; Sucheston-Campbell, L.

10.1101/326033 — genomics — Posted on 2018-05-28

414 Evolution of sex determination and heterogamety changes in section Otites of the genus Silene

Balounova, V.; Gogela, R.; Cegan, R.; Cangren, P.; Zluvova, J.; Safar, J.; Kovacova, V.; Bergero, R.; Hobza, R.; Vyskot, B.; Oxelman, B.; Charlesworth, D.; Janousek, B.

10.1101/325068 — evolutionary biology — Posted on 2018-05-28

415 Investigating the neuroprotective effect of AAV-mediated β-synuclein overexpression in a transgenic model of synucleinopathy

Sargent, D.; Betemps, D.; Drouyer, M.; Verchere, J.; Gaillard, D.; Arsac, J.-N.; Lakhdar, L.; Salvetti, A.; Baron, T.

10.1101/300822 — neuroscience — Posted on 2018-05-28

416 Neural Networks for Efficient Bayesian Decoding of Natural Images from Retinal Neurons

Parthasarathy, N.; Batty, E.; Falcon, W.; Rutten, T.; Rajpal, M.; Chichilnisky, E. J.; Paninski, L.

10.1101/153759 — neuroscience — Posted on 2018-05-28

417 Neural circuits for long-range color filling-in

Gerardin, P.; Abbatecola, C.; Devinck, F.; Kennedy, H.; Dojat, M.; Knoblauch, K.

10.1101/223156 — neuroscience — Posted on 2018-05-28

418 The marked diversity of unique cortical enhancers enables neuron-specific tools by Enhancer-Driven Gene Expression

Blankvoort, S.; Witter, M. P.; Noonan, J.; Cotney, J.; Kentros, C.

10.1101/276394 — neuroscience — Posted on 2018-05-28

419 Specific cholesterol binding drives drastic structural alterations in Apolipoprotein A1

Ray, A.; Ghosh, A.; Chakraborty, R.; Upadhyay, S. K.; Maiti, S.; Sengupta, S.; Thukral, L.

10.1101/228627 — biophysics — Posted on 2018-05-28

420 Extensions Of BLUP Models For Genomic Prediction In Heterogeneous Populations: Application In A Diverse Switchgrass Sample

Ramstein, G. P.; Casler, M.

10.1101/124081 — genetics — Posted on 2018-05-28

421 Stress affects the epigenetic marks added by natural transposable element insertions in Drosophila melanogaster

Guio, L.; Vieira, C.; Gonzalez, J.

10.1101/037598 — evolutionary biology — Posted on 2018-05-28

422 MD-AD: Multi-task deep learning for Alzheimer’s disease neuropathology

Beebe-Wang, N.; Celik, S.; Lee, S.-I.

10.1101/331942 — systems biology — Posted on 2018-05-27

423 DNA metabarcoding diet analysis reveals dynamic feeding behaviour and biological control potential of carabid farmland communities

Kamenova, S.; Bretagnolle, V.; Plantegenest, M.; Canard, E.

10.1101/332312 — ecology — Posted on 2018-05-27

424 Cryo-EM structure of the circumsporozoite protein of Plasmodium falciparum with a vaccine-elicited antibody reveals maturation of inter-antibody contacts

Oyen, D.; Torres, J. L.; Cottrell, C. A.; King, C. R.; Wilson, I. A.; Ward, A. B.

10.1101/332304 — immunology — Posted on 2018-05-27

425 Bacteria associated with jellyfish during bloom and post-bloom periods

Kos Kramar, M.; Tinta, T.; Lucic, D.; Malej, A.; Turk, V.

10.1101/329524 — ecology — Posted on 2018-05-27

426 Disease and climate effects on individuals jointly drive post-reintroduction population dynamics of an endangered amphibian

Joseph, M. B.; Knapp, R. A.

10.1101/332114 — ecology — Posted on 2018-05-27

427 Using molecular ecological network analysis to explore the effects of chemotherapy on intestinal microbial communities of colorectal cancer patients

Cong, J.; Zhu, J.; Zhang, C.; Li, T.; Liu, K.; Liu, D.; Zhou, N.; Jiang, M.; Hou, H.; Zhang, X.

10.1101/331876 — microbiology — Posted on 2018-05-27

428 Isolation and antibiotic profile of Vibrio spp. final effluents of two wastewater treatment plants in the Eastern Cape of South Africa

Osuolale, O.; Okoh, A.

10.1101/330456 — microbiology — Posted on 2018-05-27

429 Host protein CD63 enhances viral RNA replication by interacting with human astrovirus nonstructural protein nsP1a/4

zhao, w.; liu, N.; Tao, X. L.; Zheng, C. h.; Li, X. y.; Yu, M.; Li, Y. g.

10.1101/331835 — microbiology — Posted on 2018-05-27

430 Using the Wax moth larva Galleria mellonella infection model to detect emerging bacterial pathogens

Hernandez, R.; Hesse, E.; Dowling, A.; Coyle, N.; Feil, E.; Gaze, W.; Vos, M.

10.1101/327015 — microbiology — Posted on 2018-05-27

431 Molecular inactivation of exopolysaccharide biosynthesis in Paenibacillus polymyxa DSM 365 for enhanced 2,3-butanediol production

Okonkwo, C. C.; Ujor, V.; Ezeji, T.

10.1101/331843 — bioengineering — Posted on 2018-05-27

432 Investigating the efficacy of triple artemisinin-based combination therapies (TACTs) for treating Plasmodium falciparum malaria patients using mathematical modelling

Simpson, J. A.; McCaw, J.; Cao, P.; J.I. Fowkes, F.; Zaloumis, S.; Price, R. N.; Dini, S.

10.1101/331850 — pharmacology and toxicology — Posted on 2018-05-27

433 Temporal alignment and latent Gaussian process factor inference in population spike trains

Duncker, L.; Sahani, M.

10.1101/331751 — neuroscience — Posted on 2018-05-27

434 Conservation and Divergence in the Asexual Sporulation Gene Regulatory Network Across a Genus of Filamentous Fungi

Wu, M.-Y.; Mead, M. E.; Lee, M.-K.; Kim, S. C.; Rokas, A.; Yu, J.-H.

10.1101/331868 — microbiology — Posted on 2018-05-27

435 Explainable machine learning prediction of synergistic drug combinations for precision cancer medicine

Janizek, J. D.; Celik, S.; Lee, S.-I.

10.1101/331769 — cancer biology — Posted on 2018-05-27

436 Quenching a swarm: Effect of light exposure on suppression of collective motility in swarming Serratia marcescens

Patteson, A.; Arratia, P.; Gopinath, A.

10.1101/331801 — biophysics — Posted on 2018-05-27

437 Optimization of Experiment Design for Mass Spectrometric Isotopic Labeling Kinetics

Lathwal, S.; Raaisa, R.; Alves, T. C.; Kibbey, R. G.; Jha, A. K.; Mason, G. F.

10.1101/331520 — bioinformatics — Posted on 2018-05-27

438 Genome assembly and gene expression in the American black bear provides new insights into the renal response to hibernation.

Srivastava, A.; Sarsani, V.; Fiddes, I.; Sheehan, S.; Seger, R.; Barter, M.; Neptune-Bear, S.; Lindqvist, C.; Korstanje, R.

10.1101/316596 — genomics — Posted on 2018-05-27

439 Crystal Structure of Human Nocturnin Catalytic Domain

Estrella, M.; Du, J.; Korennykh, A.

10.1101/330514 — biophysics — Posted on 2018-05-27

440 Customizing material into embodied cap by sponge crab

Harada, K.; Kagaya, K.

10.1101/330787 — animal behavior and cognition — Posted on 2018-05-27

441 Fusarium graminearum-induced shoot elongation and root reduction in maize seedlings correlate with later seedling blight severity

Zhou, S.; Bae, J. S.; Bergstrom, G. C.; Jander, G.

10.1101/287714 — plant biology — Posted on 2018-05-27

442 The genetics of behavioral isolation in an island system

Blankers, T.; Oh, K. P.; Shaw, K. L.

10.1101/250852 — evolutionary biology — Posted on 2018-05-27

443 D-amino acid-mediated translation arrest is modulated by the identity of the incoming aminoacyl-tRNA

Fleisher, R. C.; Cornish, V. W.; Gonzalez, R. L.

10.1101/323295 — biochemistry — Posted on 2018-05-27

444 Criteria for evaluating molecular markers: Comprehensive quality metrics to improve marker-assisted selection

Platten, J. D.; Cobb, J. N.; Zantua, R. E.

10.1101/249987 — plant biology — Posted on 2018-05-27

445 Autonomous functionality of an upstream open reading frame in polycistronic mammalian mRNAs

Kitano, S.; Pratt, G.; Takao, K.; Aizawa, Y.

10.1101/325571 — molecular biology — Posted on 2018-05-26

446 Sequence-Dependent DNA Shape Features Regulate IL-4 Induced Chromatin Accessibility in Alternatively Activated Macrophages

Tang, M. S.; Miraldi, E. R.; Girgis, N. M.; Bonneau, R. A.; Loke, P.

10.1101/327023 — immunology — Posted on 2018-05-26

447 General Regulatory Factors control the fidelity of transcription by restricting non-coding and ectopic initiation

Challal, D.; Barucco, M.; Kubik, S.; Feuerbach, F.; Candelli, T.; Geoffroy, H.; Benaksas, C.; Shore, D.; Libri, D.

10.1101/331793 — genomics — Posted on 2018-05-26

448 Human-induced decrease of ectomycorrhizal vegetation led to loss in global soil carbon content

Soudzilovskaia, N. A.; van Bodegom, P. M.; Terrer Moreno, C.; van't Zelfde, M.; McCallum, I.; Fisher, J. B.; McCormack, L. M.; Brundrett, M.; Tedersoo, L.

10.1101/331884 — ecology — Posted on 2018-05-26

449 Structure of monomeric full-length ARC sheds light on molecular flexibility, protein interactions, and functional modalities

Hallin, E. I.; Eriksen, M. S.; Baryshnikov, S.; Nikolaienko, O.; Groedem, S.; Hosokawa, T.; Hayashi, Y.; Bramham, C. R.; Kursula, P.

10.1101/332015 — biophysics — Posted on 2018-05-26

450 Ethylene signaling regulates natural variation in the abundance of antifungal acetylated diferuloylsucroses and Fusarium graminearum resistance in maize seedling roots

Zhou, S.; Zhang, Y. K.; Kremling, K. A.; Ding, Y.; Bennett, J. S.; Bae, J. S.; Kim, D. K.; Kolomiets, M. V.; Schmelz, E. A.; Schroeder, F. C.; Buckler, E. S.; Jander, G.

10.1101/332056 — plant biology — Posted on 2018-05-26

451 Necroptosis and apoptosis contribute to cisplatin and aminoglycoside ototoxicity

Ruhl, D.; Du, T.-T.; Choi, J.-H.; Li, S.; Reed, R.; Freeman, M.; Hashisaki, G.; Lukens, J. R.; Shin, J.-B.

10.1101/332031 — neuroscience — Posted on 2018-05-26

452 D-amino acid-mediated translation arrest is modulated by the identity of the incoming aminoacyl-tRNA

Fleisher, R. C.; Cornish, V. W.; Gonzalez, R. L.

10.1101/323295 — biochemistry — Posted on 2018-05-26

453 Early projections of Ebola outbreak size and duration with and without vaccine use in Equateur, Democratic Republic of Congo, as of May 21, 2018

Kelly, J. D.; Worden, L.; Wannier, R.; Hoff, N. A.; Mukadi, P.; Sinai, C.; Ackley, S.; Chen, X.; Gao, D.; Rutherford, G. W.; Lietman, T. M.; Muyembe-Tamfum, J. J.; Rimoin, A. W.; Porco, T. C.

10.1101/331447 — epidemiology — Posted on 2018-05-26

454 Experimentally infection of Cattle with wild types of Peste-des-petits-ruminants Virus -- Role in its maintenance and spread

Couacy-Hymann, E.; Kouadio, V. K.; Koffi, M. Y.; Mossoum, A.; Kouassi, A. L.; Assemian, K.; Godji, P.

10.1101/331827 — epidemiology — Posted on 2018-05-26

455 Introduced populations of ragweed show as much evolutionary potential as native populations

McGoey, B. V.; Stinchcombe, J.

10.1101/305540 — evolutionary biology — Posted on 2018-05-26

456 Error-prone bypass of DNA lesions during lagging strand replication is a common source of germline and cancer mutations

Seplyarskiy, V.; Akkuratov, E. E.; Akkuratova, N. V.; Andrianova, M. A.; Nikolaev, S. I.; Bazykin, G. A.; Adameyko, I.; Sunyaev, S. R.

10.1101/200691 — biochemistry — Posted on 2018-05-26

457 General Functional Connectivity: shared features of resting-state and task fMRI drive reliable individual differences in functional brain networks

Elliott, M. L.; Knodt, A. R.; Kim, M. J.; Melzer, T. R.; Keenan, R.; Ireland, D.; Ramrakha, S.; Poulton, R.; Caspi, A.; Moffitt, T. E.; Hariri, A. R.

10.1101/330530 — neuroscience — Posted on 2018-05-26

458 A synthesis of mapping experiments reveals extensive genomic structural diversity in the Mimulus guttatus species complex

Flagel, L.; Blackman, B. K.; Fishman, L.; Monnahan, P. J.; Sweigart, A.; Kelly, J. K.

10.1101/330159 — genetics — Posted on 2018-05-26

459 MMOD-induced structural changes of hydroxylase in soluble methane monooxygenase

Cho, U.-S.; Lee, S. J.; Kim, H.; An, S.; Park, Y. R.; Jang, H.; Park, S.

10.1101/331512 — biochemistry — Posted on 2018-05-26

460 Joint Modeling of Reaction Times and Choice Improves Parameter Identifiability in Reinforcement Learning Models

Ballard, I. C.; McClure, S. M.

10.1101/306720 — neuroscience — Posted on 2018-05-26

461 Identification of a novel subfamily of bacterial AAT-fold basic amino acid decarboxylases and functional characterization of its first representative: Pseudomonas aeruginosa LdcA

Carriel, D.; Garcia, P. S.; Castelli, F.; Lamourette, P.; Fenaille, F.; Brochier-Armanet, C.; Elsen, S.; Gutsche, I.

10.1101/308080 — microbiology — Posted on 2018-05-26

462 The variability of amino acids sequences in hepatitis B virus

Cao, J.; Luo, S.; Xiong, Y.

10.1101/326959 — microbiology — Posted on 2018-05-26

463 A bHLH-PAS protein regulates light-dependent diurnal rhythmic processes in the marine diatom Phaeodactylum tricornutum

Annunziata, R.; Ritter, A.; Fortunato, A. E.; Cheminant-Navarro, S.; Agier, N.; Huysman, M. J. J.; Winge, P.; Bones, A.; Bouget, F.-Y.; Cosentino Lagomarsino, M.; Bouly, J. P.; Falciatore, A.

10.1101/271445 — molecular biology — Posted on 2018-05-26

464 DeepProfile: Deep learning of cancer molecular profiles for precision medicine

Dincer, A. B.; Celik, S.; Hiranuma, N.; Lee, S.-I.

10.1101/278739 — bioinformatics — Posted on 2018-05-26

465 Building a local community of practice in scientific programming for Life Scientists

Stevens, S. L. R.; Kuzak, M.; Martinez, C.; Moser, A.; Bleeker, P. M.; Galland, M.

10.1101/265421 — scientific communication and education — Posted on 2018-05-26

466 The accuracy of LD Score regression as an estimator of confounding and genetic correlations in genome-wide association studies

Lee, J. J.; McGue, M.; Iacono, W. G.; Chow, C. C.

10.1101/234815 — genetics — Posted on 2018-05-26

467 Efficient multi-task chemogenomics for drug specificity prediction

Playe, B.; Azencott, C.-A.; Stoven, V.

10.1101/193391 — bioinformatics — Posted on 2018-05-26

468 The landscapes of T cell epitope immunogenicity in sequence space

Ogishi, M.; Yotsuyanagi, H.

10.1101/155317 — immunology — Posted on 2018-05-26

469 Establishing a cell-free Vibrio natriegens expression system

Wiegand, D. J.; Lee, H. H.; Ostrov, N.; Church, G. M.

10.1101/331645 — synthetic biology — Posted on 2018-05-26

470 Nucleus- and plastid-targeted annexin 5 promotes reproductive development in Arabidopsis and is essential for pollen and embryo formation

Lichocka, M.; Rymaszewski, W.; Morgiewicz, K.; Barymow-Filoniuk, I.; Chlebowski, A.; Sobczak, M.; Samuel, M.; Schmelzer, E.; Krzymowska, M.; Hennig, J.

10.1101/331249 — plant biology — Posted on 2018-05-25

471 Predicting natural language descriptions of smells

Gutierrez, E. D.; Dhurandhar, A.; Keller, A.; Cecchi, G.; Meyer, P.

10.1101/331470 — neuroscience — Posted on 2018-05-25

472 Porcine Parvovirus VP1/VP2 on a Time Series Epitope Mapping: exploring the effects of high hydrostatic pressure on the immune recognition of antigens.

de Souza, A. R.; Yasmin, M.; Gava, D.; Ciacci-Zanella, J. R.; Gatti, M. S.; Bonafe, C. F.; de Lima Neto, D. F.

10.1101/330589 — microbiology — Posted on 2018-05-25

473 Eradication of ENO1-deleted Glioblastoma through Collateral Lethality

Lin, Y.-H.; Satani, N.; Hammoudi, N.; Ackroyd, J. J.; Khadka, S.; Yan, V. C.; Georgiou, D. K.; Sun, Y.; Zielinski, R.; Tran, T.; Pando, S. C.; Wang, X.; Maxwell, D.; Peng, Z.; Pisaneschi, F.; Mandal, P.; Leonard, P. G.; Xu, Q.; Wu, Q.; Jiang, Y.; Czako, B.; Kang, Z.; Asara, J. M.; Priebe, W.; Bornmann, W.; Marszalek, J. R.; DePinho, R. A.; Muller, F. L.

10.1101/331538 — cancer biology — Posted on 2018-05-25

474 Glucocorticoid Regulation of Ependymal Glia and Regenerative Potential after Spinal Cord Injury

Nelson, C. M.; Lee, H. B.; Krug, R. G.; Kamalova, A.; Madigan, N. N.; Clark, K. J.; Lennon, V. A.; Windebank, A. J.; Henley, J. R.

10.1101/328781 — neuroscience — Posted on 2018-05-25

475 Pioneering, chromatin remodeling, and epigenetic constraint in early T-cell gene regulation by PU.1

Ungerback, J.; Hosokawa, H.; Wang, X.; Strid, T.; Williams, B. A.; Sigvardsson, M.; Rothenberg, E. V.

10.1101/331710 — immunology — Posted on 2018-05-25

476 Tandem duplications lead to loss of fitness effects in CRISPR-Cas9 data

Goncalves, E.; Behan, F. M.; Louzada, S.; Arnol, D.; Stronach, E.; Yang, F.; Yusa, K.; Stegle, O.; Iorio, F.; Garnett, M. J.

10.1101/325076 — genomics — Posted on 2018-05-25

477 Protein design under competition for amino acids availability

Nerattini, F.; Tubiana, L.; Cardelli, C.; Bianco, V.; Dellago, C.; Coluzza, I.

10.1101/331736 — biophysics — Posted on 2018-05-25

478 iSEE: Interface Structure, Evolution and Energy-based machine learning predictor of binding affinity changes upon mutations

Geng, C.; Vangone, A.; Folkers, G. E.; Xue, L. C.; Bonvin, A. M. J. J.

10.1101/331280 — bioinformatics — Posted on 2018-05-25

479 Linking single-cell measurements of mass, growth rate, and gene expression

Kimmerling, R. J.; Prakadan, S. M.; Gupta, A. J.; Calistri, N. L.; Stevens, M. M.; Olcum, S.; Cermak, N.; Drake, R. S.; Shalek, A. K.; Manalis, S. R.

10.1101/331686 — bioengineering — Posted on 2018-05-25

480 Estrogen Regulates the Satellite Cell Compartment in Females

Collins, B. C.; Arpke, R. W.; Larson, A. A.; Baumann, C. W.; Cabelka, C. A.; Nash, N. L.; Juppi, H.-K.; Laakkonen, E. K.; Sipila, S.; Kovanen, V.; Spangenburg, E. E.; Kyba, M.; Lowe, D. A.

10.1101/331777 — cell biology — Posted on 2018-05-25

481 Chronic Physical Disturbance Substantially Alters the Response of Biological Soil Crusts to a Wetting Pulse, as Characterized by Metatranscriptomic Sequencing

Steven, B.; Kuske, C.

10.1101/326181 — microbiology — Posted on 2018-05-25

482 Targeting light-gated chloride channels to neuronal somatodendritic domain reduces their excitatory effect in the axon

Messier, J.; Chen, H.; Cai, Z.-L.; Xue, M.

10.1101/331165 — neuroscience — Posted on 2018-05-25

483 Native tau structure is disrupted by disease-associated mutations that promote aggregation

Drombosky, K. W.; Chen, D.; Woodard, D.; Sari, L.; Lin, M.; Diamond, M. I.; Joachimiak, L. A.

10.1101/330266 — biophysics — Posted on 2018-05-25

484 Published estimates of group differences in multisensory integration are inflated

Magnotti, J.; Beauchamp, M.

10.1101/331702 — neuroscience — Posted on 2018-05-25

485 A retinal circuit generating a dynamic predictive code for orientated features

Johnston, J.; Seibel, S.-H.; Darnet, L. S. A.; Renninger, S.; Orger, M.; Lagnado, L.

10.1101/331504 — neuroscience — Posted on 2018-05-25

486 Activity-dependent netrin-1 secretion drives synaptic insertion of GluA1-containing AMPA receptors in the hippocampus.

Glasgow, S. D.; Labrecque, S.; Beamish, I. V.; Aufmkolk, S.; Gibon, J.; Han, D.; Harris, S. N.; Dufresne, P.; Wiseman, P. W.; McKinney, R. A.; Seguela, P.; De Koninck, P.; Ruthazer, E.; Kennedy, T. E.

10.1101/330688 — neuroscience — Posted on 2018-05-25

487 Crowdsourced study of children with autism and their typically developing siblings identifies differences in taxonomic and predicted function for stool-associated microbes using exact sequence variant analysis.

David, M. M.; Tataru, C.; Daniels, J.; Schwartz, J.; Keating, J.; Hampton-Marcell, J.; Gottel, N.; Gilbert, J. A.; Wall, D. P.

10.1101/319236 — microbiology — Posted on 2018-05-25

488 The transcriptome of Paraphelidium tribonemae illuminates the ancestry of Fungi and Opisthosporidia

Torruella, G.; Grau-Bove, X.; Moreira, D.; Karpov, S. A.; Burns, J.; Sebe-Pedros, A.; Volcker, E.; Lopez-Garcia, P.

10.1101/233882 — evolutionary biology — Posted on 2018-05-25

489 Dynamics of supercoiled DNA with complex knots: large-scale rearrangements and persistent multi-strand interlocking

Coronel, L.; Suma, A.; Micheletti, C.

10.1101/331314 — biophysics — Posted on 2018-05-25

490 Shared Nucleotide Flanks Confer Transcriptional Competency to bZip Core Motifs

Cohen, D. M.; Lim, H.-W.; Won, K. J.; Steger, D. J.

10.1101/262659 — genomics — Posted on 2018-05-25

491 Characterization of novel inhibition of indoleamine 2,3-dioxygenase by targeting its apo form.

Ortiz-Meoz, R. F.; Wang, L.; Matico, R.; Rutkowska, A.; De la Rosa, M.; Bedard, S.; Midgett, R.; Strohmer, K.; Thomson, D.; Zhang, C.; Guss, J.; Totoritis, R.; Consler, T.; Campobasso, N.; Taylor, D.; Lewis, T.; Weaver, K.; Mulbaier, M.; Seal, J.; Dunham, R.; Kazmierski, W.; Favre, D.; Bergamini, G.; Shewchuk, L.; Rendina, A.; Zhang, G.

10.1101/324947 — biochemistry — Posted on 2018-05-25

492 MMOD-induced structural changes of hydroxylase in soluble methane monooxygenase

Cho, U.-S.; Lee, S. J.; Kim, H.; An, S.; Park, Y. R.; Jang, H.; Park, S.

10.1101/331512 — biochemistry — Posted on 2018-05-25

493 Ancestral resurrection reveals mechanisms of kinase regulatory evolution

Sang, D.; Pinglay, S.; Vatansever, S.; Lou, H. J.; Turk, B. E.; Gumus, Z. H.; Holt, L. J.

10.1101/331637 — evolutionary biology — Posted on 2018-05-25

494 Protein Association Pathways and Dynamics with Improved Potential Functions in all atom MD Simulations

Li, Z.-l.; Buck, M.

10.1101/241810 — biophysics — Posted on 2018-05-25

495 Using global t-SNE to preserve inter-cluster data structure

Zhou, Y.; Sharpee, T.

10.1101/331611 — bioinformatics — Posted on 2018-05-25

496 Behavioral effect of chemogenetic inhibition is directly related to receptor transduction levels in rhesus monkeys

Upright, N. A.; Brookshire, S. W.; Schnebelen, W.; Damatac, C. G.; Hof, P. R.; Browning, P. G. F.; Croxson, P. L.; Rudebeck, P. H.; Baxter, M. G.

10.1101/331694 — neuroscience — Posted on 2018-05-25

497 A congenital pain insensitivity mutation in the nerve growth factor gene uncouples nociception from affective pain in heterozygous humans and mice

Testa, G.; Perini, I.; Mainardi, M.; Morelli, C.; Olimpico, F.; Pancrazi, L.; Petrella, C.; Severini, C.; Florio, R.; Malerba, F.; Heppenstall, P.; Costa, M.; Morrison, I.; Capsoni, S.; Cattaneo, A.

10.1101/331587 — neuroscience — Posted on 2018-05-25

498 Multiplexed Primer Extension Sequencing Enables High Precision Detection of Rare Splice Isoforms

Xu, H.; Fair, B. J.; Dwyer, Z.; Gildea, M.; Pleiss, J. A.

10.1101/331629 — molecular biology — Posted on 2018-05-25

499 Immunobiochemical reconstruction of influenza lung infection - Melanoma skin cancer interactions

Nikolaev, E. V.; Zloza, A.; Sontag, E.

10.1101/331546 — immunology — Posted on 2018-05-25

500 Integrating genotype and weather variables for soybean yield prediction using deep learning

Shook, J. M.; Wu, L.; Gangopadhyay, T.; Ganapathysubramanian, B.; Sarkar, S.; Singh, A. K.

10.1101/331561 — bioinformatics — Posted on 2018-05-25

501 S1PR3 mediates itch and pain via distinct TRP channel-dependent pathways

Hill, R. Z.; Morita, T.; Brem, R. B.; Bautista, D. M.

10.1101/235614 — neuroscience — Posted on 2018-05-25

502 Learning Nonlinear Brain Dynamics: van der Pol Meets LSTM

Abrevaya, G.; Aravkin, A.; Cecchi, G.; Rish, I.; Polosecki, P.; Zheng, P.; Dawson, S.

10.1101/330548 — neuroscience — Posted on 2018-05-25

503 Spatial Topography of Individual-Specific Cortical Networks Predicts Human Cognition, Personality and Emotion

Kong, R.; Li, J.; Orban, C.; Sabuncu, M. R.; Liu, H.; Schaefer, A.; Sun, N.; Zuo, X.-N.; Holmes, A.; Eickhoff, S. B.; Yeo, B. T. T.

10.1101/213041 — neuroscience — Posted on 2018-05-25

504 Reproducible integration of multiple sequencing datasets to form high-confidence SNP, indel, and reference calls for five human genome reference materials

Zook, J.; McDaniel, J.; Parikh, H.; Heaton, H.; Irvine, S. A.; Trigg, L.; Truty, R.; McLean, C. Y.; De La Vega, F. M.; Xiao, C.; Sherry, S.; Salit, M.; Genome in a Bottle Consortium,

10.1101/281006 — genomics — Posted on 2018-05-25

505 Additive genetic and environmental contributions to the longitudinal association between violent victimization and depression

Kavish, N. A.; Connolly, E. J.; Boutwell, B. B.

10.1101/164194 — genetics — Posted on 2018-05-25

506 Genomics of microgeographic adaptation in the Amazonian hyperdominant tree Eperua falcata Aubl. (Fabaceae).

Brousseau, L.; Fine, P. V. A.; Dreyer, E.; Vendramin, G. G.; Scotti, I.

10.1101/312843 — evolutionary biology — Posted on 2018-05-25

507 Neutrophil counts and cancer prognosis: an umbrella review of systematic reviews and meta-analyses of observational studies

Cupp, M. A.; Cariolou, M.; Tzoulaki, I.; Evangelos, E.; Berlanga-Taylor, A. J.

10.1101/330076 — epidemiology — Posted on 2018-05-25

508 Age-specific differences in the dynamics of protective immunity to influenza

Ranjeva, S.; Subramanian, R.; Fang, V. J.; Leung, G. M.; Ip, D. K. M.; Perera, R. A. P. M.; Peiris, J. S. M.; Cowling, B. J.; Cobey, S.

10.1101/330720 — epidemiology — Posted on 2018-05-25

509 NetrinG1/NGL-1 Axis promotes pancreatictumorigenesis through cancer associated fibroblastderived nutritional supply and immunosuppression

Francescone, R.; Barbosa Vendramini-Costa, D.; Franco-Barraza, J.; Wagner, J.; Muir, A.; Gabitova, L.; Pazina, T.; Luong, T.; Shah, N.; Rollins, D.; Gupta, S.; Thapa, R.; Restifo, D.; Lau, A.; Zhou, Y.; Cai, K. Q.; Hensley, H.; Nicolas, E.; Kruger, W.; Devarajan, K.; Balachandran, S.; El-Deiry, W. S.; Vander Heiden, M.; Campbell, K. S.; Astsaturov, I.; Cukierman, E.

10.1101/330209 — cancer biology — Posted on 2018-05-25

510 Mass spectra alignment using virtual lock-masses

Brochu, F.; Plante, P.-L.; Drouin, A.; Laviolette, F.; Marchand, M.; Corbeil, J.

10.1101/292425 — bioinformatics — Posted on 2018-05-25

511 General Functional Connectivity: shared features of resting-state and task fMRI drive reliable individual differences in functional brain networks

Elliott, M. L.; Knodt, A. R.; Kim, M. J.; Melzer, T. R.; Keenan, R.; Ireland, D.; Ramrakha, S.; Poulton, R.; Caspi, A.; Moffitt, T. E.; Hariri, A. R.

10.1101/330530 — neuroscience — Posted on 2018-05-25

512 The variability of amino acids sequences in hepatitis B virus

Cao, J.; Luo, S.; Xiong, Y.

10.1101/326959 — microbiology — Posted on 2018-05-25

513 The Sheep and the Goats: Distinguishing transcriptional enhancers in a complex chromatin landscape

Sonnenschein, A.; Dworkin, I.; Arnosti, D.

10.1101/324582 — genomics — Posted on 2018-05-25

514 Spousal Concordance in Telomere Length: New Evidence from Older Adults in the US

Fletcher, J.

10.1101/327528 — epidemiology — Posted on 2018-05-25

515 Complex dynamics in an SIS epidemic model induced by nonlinear incidence

Yuan, R.; Teng, Z.; Li, J.

10.1101/331678 — epidemiology — Posted on 2018-05-25

516 Estimates for quality of life loss due to RSV

Hodgson, D.; Atkins, K.; Baguelin, M.; Panovska-Griffiths, J.; Thorrington, D.; van Hoek, A. J.; Zhao, H.; Fragaszy, E.; Hayward, A.; Pebody, R.

10.1101/321844 — epidemiology — Posted on 2018-05-25

517 Identifying Parkinson’s disease and parkinsonism cases using routinely-collected healthcare data: a systematic review

Harding, Z.; Wilkinson, T.; Stevenson, A.; Horrocks, S.; Ly, A.; Schnier, C.; Breen, D. P.; Rannikmäe, K.; Sudlow, C. L.; Dementias Platform UK,

10.1101/331652 — epidemiology — Posted on 2018-05-25

518 Epigenetic selection and the DNA methylation signatures of adverse prenatal environments

Tobi, E.; van den Heuvel, J.; Zwaan, B.; Lumey, L. H.; Heijmans, B. T.; Uller, T.

10.1101/321711 — epidemiology — Posted on 2018-05-25

519 Seroprevalence of Hepatitis B and C among Healthcare Workers in Dutse Metropolis Jigawa State, Nigeria

Sani, N. M.; Bitrus, I.; Sarki, A. M.; Mujahid, N. S.

10.1101/327940 — epidemiology — Posted on 2018-05-25

520 The Charlson Index is insufficient to control for comorbidities in a national trauma registry

Renson, A.; Bjurlin, M. A.

10.1101/329581 — epidemiology — Posted on 2018-05-25

521 Assessing sustainability in North America’s ecosystems using criticality and information theory

Ramirez-Carrillo, E.; Lopez-Corona, O.; Toledo-Roy, J. C.; Lovett, J.; de Leon-Gonzalez, F.; Osorio-Olvera, L.; Equihua, J.; Robredo, E.; Frank, A.; Dirzo, R.; Perez-Cirera, V.

10.1101/330415 — ecology — Posted on 2018-05-25

522 Effect of fluoxetine on adult amblyopia: a placebo-controlled study combining neuroplasticity-enhancing pharmacological intervention and perceptual training

Huttunen, H. J.; Palva, J. M.; Lindberg, L.; Palva, S.; Saarela, V.; Karvonen, E.; Latvala, M.-L.; Liinamaa, J.; Booms, S.; Castren, E.; Uusitalo, H.

10.1101/327650 — clinical trials — Posted on 2018-05-25

523 Analysis of HIV-1 latent reservoir and rebound viruses in a clinical trial of anti-HIV-1 antibody 3BNC117

Cohen, Y. Z.; Lorenzi, J. C. C.; Krassnig, L.; Barton, J. P.; Burke, L.; Pai, J.; Lu, C.-L.; Mendoza, P.; Oliveira, T. Y.; Sleckman, C.; Millard, K.; Butler, A.; Dizon, J. P.; Belblidia, S.; Witmer-Pack, M.; Shimeliovich, I.; Gulick, R. M.; Seaman, M. S.; Jankovic, M.; Caskey, M.; Nussenzweig, M. C.

10.1101/324509 — clinical trials — Posted on 2018-05-25

524 Native tau structure is disrupted by disease-associated mutations that promote aggregation

Drombosky, K. W.; Chen, D.; Woodard, D.; Sari, L.; Lin, M.; Diamond, M. I.; Joachimiak, L. A.

10.1101/330266 — biophysics — Posted on 2018-05-25

525 Magnetic resonance imaging of the regenerating neonatal mouse heart

Gunadasa-Rohling, M.; Masters, M.; Maguire, M.; Smart, S.; Schneider, J.; Riley, P.

10.1101/329474 — biophysics — Posted on 2018-05-25

526 Attend and Predict: Understanding Gene Regulation by Selective Attention on Chromatin

Singh, R.; Lanchantin, J.; Sekhon, A.; Qi, Y.

10.1101/329334 — bioinformatics — Posted on 2018-05-25

527 The effect of nutrient storage on courtship behavior and copulation frequency in the fruit fly, Drosophila melanogaster.

Gomes, H. A. B.; DiAngelo, J. R.; Santangelo, N.; N/A,

10.1101/331660 — animal behavior and cognition — Posted on 2018-05-25

528 Stabilized Independent Component Analysis outperforms other methods in finding reproducible signals in tumoral transcriptomes

Cantini, L.; Kairov, U.; de Reynies, A.; Barillot, E.; Radvanyi, F.; Zinovyev, A.

10.1101/318154 — systems biology — Posted on 2018-05-25

529 Is there a problem with methods skills in cognitive neuroscience? Evidence from an online survey.

Hauk, O.

10.1101/329458 — scientific communication and education — Posted on 2018-05-25

530 Contrasting effects of acute and chronic stress on the transcriptome, epigenome, and immune response of Atlantic salmon

Uren Webster, T. M.; Rodriguez-Barreto, D.; Martin, S. A. M.; van Oosterhout, C.; Orozco-terWengel, P.; Cable, J.; Hamilton, A.; Garcia de Leaniz, C.; Consuegra, S.

10.1101/319285 — genomics — Posted on 2018-05-25

531 The UCSC Xena Platform for cancer genomics data visualization and interpretation

Goldman, M.; Craft, B.; Kamath, A.; Brooks, A. N.; Zhu, J.; Haussler, D.

10.1101/326470 — cancer biology — Posted on 2018-05-25

532 Major concerns with the integrity of the mitochondrial ADP/ATP carrier in dodecyl-phosphocholine used for solution NMR studies

King, M. S.; Crichton, P. G.; Ruprecht, J. R.; Kunji, E. R.

10.1101/329490 — biophysics — Posted on 2018-05-25

533 Preoperative predictions of in-hospital mortality using electronic medical record data

Hill, B.; Brown, R. P.; Gabel, E.; Lee, C.; Cannesson, M.; Olde Loohuis, L.; Johnson, R.; Jew, B.; Maoz, U.; Mahajan, A.; Sankararaman, S.; Hofer, I.; Halperin, E.

10.1101/329813 — bioinformatics — Posted on 2018-05-25

534 Rapid alignment-free phylogenetic identification of metagenomic sequences

Linard, B.; Swenson, K.; Pardi, F.

10.1101/328740 — bioinformatics — Posted on 2018-05-25

535 Revealing subthreshold motor contributions to perceptual confidence

gajdos, t.; Fleming, S.; Saez Garcia, M.; Weindel, G.; Davranche, K.

10.1101/330605 — neuroscience — Posted on 2018-05-25

536 Pathways of pathogenicity: The transcriptional stages of germination in the fatal fungal pathogen Rhizopus delemar

Sephton-Clark, P. C. S.; Munoz, J. F.; Ballou, E.; Cuomo, C. A.; Voelz, K.

10.1101/330969 — microbiology — Posted on 2018-05-25

537 The Gut-Associated Microbiome of the Eastern Spruce Budworm Does Not Influence Larval Growth or Survival

Schwarz, M. T.; Kneeshaw, D.; Kembel, S.

10.1101/330928 — microbiology — Posted on 2018-05-25

538 Multi-Tissue Transcriptome-Wide Association Studies Identify 21 Novel Candidate Susceptibility Genes for High Grade Serous Epithelial Ovarian Cancer

Gusev, A.; Lawrenson, K.; Segato, F.; Fonseca, M.; Kar, S.; Lee, J.; Pejovic, T.; Ovarian Cancer Association Consortium, ; Karlan, B.; Freedman, M.; Noushmehr, H.; Pharoah, P.; Pasaniuc, B.; Gayther, S.

10.1101/330613 — genomics — Posted on 2018-05-25

539 Transmembrane exchange of fluorosugars: characterization of red cell GLUT1 kinetics using 19F NMR

Shishmarev, D.; Fontenelle, C. Q.; Kuprov, I.; Linclau, B.; Kuchel, P. W.

10.1101/331231 — biophysics — Posted on 2018-05-25

540 REVA: a rank-based multi-dimensional measure of correlation

Afsari, B.; Favorov, A.; Fertig, E. J.; Cope, L.

10.1101/330498 — bioinformatics — Posted on 2018-05-25

541 Towards measuring growth rates of pathogens during infections by D2O-labeling lipidomics

Neubauer, C.; Sessions, A. L.; Booth, I. R.; Bowen, B. P.; Kopf, S. H.; Newman, D. K.; Dalleska, N. F.

10.1101/330464 — biochemistry — Posted on 2018-05-25

542 Outbreak of Glomerulonephritis by Streptococcus zooepidemicus SzPHV5 type, in Monte Santo de Minas, Minas Gerais, Brazil

Torres, R. S. L. A.; Santos, T. Z.; Bernardes, A. F. L.; Soares, P. A.; Soares, A. C. C.; Dias, R. S.

10.1101/330944 — microbiology — Posted on 2018-05-25

543 Metagenomic analysis suggests broad metabolic potential in extracellular symbionts of the bivalve Thyasira cf. gouldi

McCuaig, B.; Pena-Castillo, L.; Dufour, S. C.

10.1101/330373 — genomics — Posted on 2018-05-25

544 Cellular geometry controls the efficiency of motile sperm aggregates

Pearce, D. J. G.; Hoogerbrugge, L.; Hook, K. A.; Fisher, H. S.; Giomi, L.

10.1101/330316 — evolutionary biology — Posted on 2018-05-25

545 Learning Nonlinear Brain Dynamics: van der Pol Meets LSTM

Abrevaya, G.; Aravkin, A.; Cecchi, G.; Rish, I.; Polosecki, P.; Zheng, P.; Dawson, S.

10.1101/330548 — neuroscience — Posted on 2018-05-25

546 Condensin controls cellular RNA levels through the accurate segregation of chromosomes instead of directly regulating transcription

Hocquet, C.; Robellet, X.; Modolo, L.; Sun, X.-M.; Burny, C.; Cuylen-Haering, S.; Toselli, E.; Clauder-Münster, S.; Steinmetz, L.; Haering, C. H.; Marguerat, S.; Bernard, P.

10.1101/330654 — molecular biology — Posted on 2018-05-25

547 Removal of the C6 vaccinia virus interferon-β inhibitor in the hepatitis C vaccine candidate MVA-HCV elicited in mice high immunogenicity in spite of reduced host gene expression

Q. Marin, M.; Perez, P.; Gomez, C. E.; S. Sorzano, C. O.; Esteban, M.; Garcia-Arriaza, J.

10.1101/330902 — immunology — Posted on 2018-05-25

548 AgriSeqDB: an online RNA-Seq database for functional studies in agriculturally relevant plant species

Robinson, A. J.; Tamiru, M.; Salby, R.; Bolitho, C.; Williams, A.; Huggard, S.; Fisch, E.; Unsworth, K.; Whelan, J.; Lewsey, M. G.

10.1101/330746 — genomics — Posted on 2018-05-25

549 C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

Kouno, T.; Moody, J.; Kwon, A.; Shibayama, Y.; Kato, S.; Huang, Y.; Böttcher, M.; Motakis, E.; Mendez, M.; Severin, J.; Luginbühl, J.; Abugessaisa, I.; Hasegawa, A.; Takizawa, S.; Arakawa, T.; Furuno, M.; Ramalingam, N.; West, J.; Suzuki, H.; Kasukawa, T.; Lassmann, T.; Hon, C.-C.; Arner, E.; Carninci, P.; Plessy, C.; Shin, J. W.

10.1101/330845 — genomics — Posted on 2018-05-25

550 Laboratory Validation of a Clinical Metagenomic Sequencing Assay for Pathogen Detection in Cerebrospinal Fluid

Miller, S.; Naccache, S.; Samayoa, E.; Messacar, K.; Arevalo, S.; Federman, S.; Stryke, D.; Pham, E.; Fung, B.; Bolosky, W. J.; Ingebrigtsen, D.; Lorizio, W.; Paff, S.; Leake, J. A.; Pesano, R. L.; DeBiasi, R.; Dominguez, S.; Chiu, C.

10.1101/330381 — genomics — Posted on 2018-05-25

551 Construction of high-density genetic maps and detection of QTLs associated with Huanglongbing infection in citrus

Huang, M.; Roose, M.; Yu, Q.; Du, D.; Zhang, Y.; Deng, z.; Irey, M.; Stover, E.; Gmitter, F.

10.1101/330753 — genetics — Posted on 2018-05-25

552 Quasi-neutral molecular evolution -- When positive and negative selection cancel out

Chen, B.; Shi, Z.; Chen, Q.; Shibata, D.; Wen, H.; Wu, C.-I.

10.1101/330811 — evolutionary biology — Posted on 2018-05-25

553 HaploVectors: an integrative analytical tool for phylogeography

Duarte, L.; Lima, J.; Maestri, R.; Debastiani, V.; Collevatti, R.

10.1101/330761 — ecology — Posted on 2018-05-25

554 Genome Functional Annotation using Deep Convolutional Neural Network

Khodabandelou, G.; Mozziconacci, J.; Routhier, E.

10.1101/330308 — bioinformatics — Posted on 2018-05-25

555 AI-MHC: an allele-integrated deep learning framework for improving Class I & Class II HLA-binding predictions

Sidhom, J.-W.; Pardoll, D.; Baras, A.

10.1101/318881 — bioinformatics — Posted on 2018-05-25

556 Transcriptional Network Analysis on Brains Reveals a Potential Regulatory Role of PPP1R3F in Autism Spectrum Disorders

Doostparast Torshizi, A.; Duan, J.; Wang, K.

10.1101/330449 — bioinformatics — Posted on 2018-05-25

557 Transparent Titanium Dioxide Nanotubes: Processing, Characterization, and Application in Establishing Cellular Response Mechanisms

Meyerink, J.; Kota, D.; Wood, S.; Crawford, G.

10.1101/330712 — bioengineering — Posted on 2018-05-25

558 Targeting light-gated chloride channels to neuronal somatodendritic domain reduces their excitatory effect in the axon

Xue, M.; Messier, J. E.; Chen, H.; Cai, Z.-L.

10.1101/331165 — neuroscience — Posted on 2018-05-25

559 Graded and bidirectional control of real-time reach kinematics by the cerebellum

Becker, M. I.; Person, A. L.

10.1101/330555 — neuroscience — Posted on 2018-05-25

560 Let-7i-5p regulation of cell morphology and migration through distinct signaling pathways in normal and pathogenic fibroblasts from urethra

Zhang, K.; Chen, J.; Zhou, S.; Yang, R.; Wang, Y.; Fu, Q.; Chen, R.; Fang, X.

10.1101/330332 — molecular biology — Posted on 2018-05-25

561 Genetic determinants of resistance and virulence among carbapenemase-producing Klebsiella pneumoniae from Sri Lanka.

Zhu, C.; Liyanapathirana, V. C.; Li, C.; Pinto, V.; Hui, M.; Lo, N. W.-S.; Wong, K.-T.; Dissanayake, N.; Ip, M.

10.1101/330951 — microbiology — Posted on 2018-05-25

562 A competence-regulated toxin-antitoxin system in Haemophilus influenzae

Findlay Black, H.; Mastromatteo, S.; Sinha, S.; Ehrlich, R.; Nislow, C.; Mell, J. C.; Redfield, R. J.

10.1101/330480 — microbiology — Posted on 2018-05-25

563 High-resolution genetic and phenotypic analysis of KIR2DL1 alleles and their association with pre-eclampsia

Huhn, O.; Chazara, O.; Ivarsson, M.; Retiere, C.; Venkatesan, T.; Ghadially, H.; Moffett, A.; Sharkey, A.; Colucci, F.

10.1101/330803 — immunology — Posted on 2018-05-25

564 Allostery in oligomeric receptor models

Conradi Smith, G. D.

10.1101/330571 — biophysics — Posted on 2018-05-25

565 crossword: A data-driven simulation language for the design of genetic-mapping experiments and breeding strategies

Korani, W. N.; VAUGHN, J. N.

10.1101/330563 — bioinformatics — Posted on 2018-05-25

566 Solving scaffolding problem with repeats

Mandric, I.; Zelikovsky, A.

10.1101/330472 — bioinformatics — Posted on 2018-05-25

567 Proximodistal organization of the CA2 hippocampal area

Fernandez-Lamo, I.; Gomez-Dominguez, D.; Sanchez-Aguilera, A.; Cid, E.; Valero, M.; Menendez de la Prida, L.

10.1101/331025 — neuroscience — Posted on 2018-05-25

568 Cryo-EM structure of the volume-regulated anion channel LRRC8

Kasuya, G.; Nakane, T.; Yokoyama, T.; Jia, Y.; Inoue, M.; Watanabe, K.; Nakamura, R.; Nishizawa, T.; Kusakizako, T.; Tsutsumi, A.; Yanagisawa, H.; Dohmae, N.; Hattori, M.; Ichijo, H.; Yan, Z.; Kikkawa, M.; Shirouzu, M.; Ishitani, R.; Nureki, O.

10.1101/331207 — molecular biology — Posted on 2018-05-25

569 Saccharomyces cerevisiae H2A copies differentially contribute to recombination and CAG/CTG repeat maintenance, with a role for H2A.1 threonine 126

House, N. C. M.; Polleys, E. J.; Quasem, I.; Joyce, C. E.; Takacsi-Nagy, O.; Hayman, R. B.; Krebs, J. E.; Fuchs, S. M.; Freudenreich, C. H.

10.1101/331413 — genetics — Posted on 2018-05-25

570 Thermal plasticity of the circadian clock is under nuclear and cytoplasmic control in wild barley

Bdolach, E.; Ranjan, M.; Faigenboim-Doron, A.; Filichkin, T.; Helgerson, L.; Schmid, K. J.; Greiner, S.; Fridman, E.

10.1101/330829 — genetics — Posted on 2018-05-25

571 A Cell Cycle Switch Dictates Organ Repair and Tissue Growth Responses in The Drosophila Hindgut

Cohen, E.; Allen, S. R.; Sawyer, J. K.; Fox, D. T.

10.1101/331223 — cell biology — Posted on 2018-05-25

572 Customizing material into embodied cap by sponge crab

Harada, K.; Kagaya, K.

10.1101/330787 — animal behavior and cognition — Posted on 2018-05-25

573 Characterisation of Antibody Interactions with the G Protein of Vesicular Stomatitis Virus Indiana Strain and Other Vesiculovirus G Proteins

Munis, A. M.; Tijani, M.; Hassall, M.; Mattiuzzo, G.; Collins, M. K.; Takeuchi, Y.

10.1101/330910 — microbiology — Posted on 2018-05-25

574 Partitioning protein ParP directly links chemotaxis to biofilm dispersal in Pseudomonas aeruginosa.

Reinhardt, J. M.; Bardy, S. L.

10.1101/330878 — microbiology — Posted on 2018-05-25

575 Ultrasensitive capture of human herpes simplex virus genomes directly from clinical samples reveals extraordinarily limited evolution in cell culture

Greninger, A. L.; Roychoudhury, P.; Xie, H.; Casto, A.; Cent, A.; Pepper, G.; Koelle, D. M.; Huang, M.-L.; Wald, A.; Johnston, C.; Jerome, K.

10.1101/330860 — genomics — Posted on 2018-05-25

576 Time Dependent Stochastic mRNA and Protein Synthesis in Piecewise-deterministic Models of Gene Networks.

Innocentini, G.; Hodgkinson, A.; Radulescu, O.

10.1101/278226 — systems biology — Posted on 2018-05-25

577 Analysis of Transcripts and splice isoforms in Red Clover (Trifolium pratense L.) by single-molecule long-read sequencing

Chao, Y.; Yuan, J.; Li, S.; Jia, S.; Han, L.; Xu, L.

10.1101/330977 — plant biology — Posted on 2018-05-25

578 Development and Validation of a Method for Human Papillomavirus Genotyping Based on Molecular Beacon Probes

Lyu, J.; Yu, Y.; Ren, X.

10.1101/330936 — molecular biology — Posted on 2018-05-25

579 pTSara-NatB, an improved N-terminal acetylation system for recombinant protein expression in E. coli

Rovere, M.; Powers, A. E.; Patel, D. S.; Bartels, T.

10.1101/331355 — molecular biology — Posted on 2018-05-25

580 Susceptibility to Neutralization by Broadly Neutralizing Antibodies Correlates with Infected Cell Binding for a Panel of Clade B HIV Reactivated from Latent Reservoirs

Ren, Y.; Korom, M.; Truong, R.; Chan, D.; Huang, S.-h.; Kovacs, C.; Benko, E.; Safrit, J. T.; Lee, J.; Garban, H.; Apps, R.; Goldstein, H.; Lynch, R. M.; Jones, R. B.

10.1101/330894 — immunology — Posted on 2018-05-25

581 RNA-seq transcript quantification from reduced-representation data in recount2

Fu, J.; Kammers, K.; Nellore, A.; Collado-Torres, L.; Leek, J. T.; Taub, M. A.

10.1101/247346 — genomics — Posted on 2018-05-25

582 Genotype by environment interactions for the shade avoidance syndrome in the plant Antirrhinum majus, the snapdragon

Mousset, M.; Marin, S.; Archambeau, J.; Blot, C.; Bonhomme, V.; Garaud, L.; Pujol, B.

10.1101/331033 — evolutionary biology — Posted on 2018-05-25

583 Animal models with group-specific additive genetic variances: extending genetic group models

Muff, S.; Niskanen, A.; Saatoglu, D.; Keller, L. F.; Jensen, H.

10.1101/331157 — evolutionary biology — Posted on 2018-05-25

584 Effectiveness of Demand creation promotions and demand creation personnel in creating demand for Voluntary Medical Male Circumcision, Chitungwiza District, Zimbabwe in 2016

Taurai Matikiti, T.; Juru, T.; Gombe, N.; Nsubuga, P.; Tshimanga, M.

10.1101/331397 — epidemiology — Posted on 2018-05-25

585 Shorter telomere length is associated with a more recent diagnosis of coeliac disease

Goorkiz, P.; Hearn, N. L.; van der Kooi, S.; Chiu, C. L.; Lind, J. M.

10.1101/331405 — cell biology — Posted on 2018-05-25

586 A novel bioreactor technology for modelling fibrosis in human and rodent precision-cut liver slices.

Paish, H.; Reed, L.; Brown, H.; Bryan, M.; Govaere, O.; Leslie, J.; Barksby, B.; French, J.; White, S.; Manas, D.; Robinson, S.; Spoletini, G.; Griffiths, C.; Mann, D.; Borthwick, L.; Drinnan, M.; Mann, J.; Oakley, F.

10.1101/331173 — cell biology — Posted on 2018-05-25

587 Highly Multiplexed Genome Engineering Using CRISPR/Cas9 gRNA Arrays

Kurata, M.; Wolf, N. K.; Lahr, W. S.; Weg, M. T.; Lee, S.; Hui, K.; Shiraiwa, M.; Webber, B. R.; Moriarity, B.

10.1101/331371 — bioengineering — Posted on 2018-05-25

588 Fast animal pose estimation using deep neural networks

Pereira, T.; Aldarondo, D.; Willmore, L.; Kislin, M.; Wang, S. S.; Murthy, M.; Shaevitz, J. W.

10.1101/331181 — animal behavior and cognition — Posted on 2018-05-25

589 Reconstruction of the cell entry pathway of an extinct virus

Robinson-McCarthy, L. R.; McCarthy, K. R.; Raaben, M.; Piccinotti, S.; Nieuwenhuis, J.; Stubbs, S. H.; Bakker, M. J. G.; Whelan, S. P. J.

10.1101/331363 — microbiology — Posted on 2018-05-25

590 GoFish: A Streamlined Environmental DNA Presence/Absence Assay for Marine Vertebrates

Stoeckle, M. Y.; Das Mishu, M.; Charlop-Powers, Z.

10.1101/331322 — ecology — Posted on 2018-05-25

591 Grape polyphenols reduce gut-localized reactive oxygen species associated with the development of metabolic syndrome in mice.

Kuhn, P.; Kalariya, H. M.; Poulev, A.; Ribnicky, D. M.; Jaja-Chimedza, A.; Roopchand, D.; Raskin, I.

10.1101/331348 — biochemistry — Posted on 2018-05-25

592 Anatomical predictors of successful prism adaptation in chronic visual neglect

Lunven, M.; Rode, G.; Bourlon, C.; Duret, C.; Migliaccio, R.; Chevrillon, E.; Thiebaut de Schotten, M.; Bartolomeo, P.

10.1101/144956 — neuroscience — Posted on 2018-05-25

593 netDx: Interpretable patient classification using integrated patient similarity networks

Pai, S.; Hui, S.; Isserlin, R.; Shah, M. A.; Kaka, H.; Bader, G. D.

10.1101/084418 — bioinformatics — Posted on 2018-05-25

594 Time Lags and Niche Shifts in a Biological Invasion of Hummingbirds

Battey, C. J.

10.1101/329615 — ecology — Posted on 2018-05-25

595 Accounting for taste: A multi-attribute neurocomputational model explains the neural dynamics of choices for self and others

Harris, A.; Clithero, J. A.; Hutcherson, C. A.

10.1101/329391 — neuroscience — Posted on 2018-05-25

596 Alternative super-enhancers result in similar gene expression in different tissues

Bojcsuk, D.; Nagy, G.; Balint, B. L.

10.1101/329987 — molecular biology — Posted on 2018-05-25

597 Targeting ion channel TRPM7 promotes the thymic development of Regulatory T cells by increasing IL-2-dependent STAT5 activation

Mendu, S. K.; Schappe, M. S.; Moser, E. K.; Krupa, J. K.; Rogers, J. S.; Stipes, E. J.; Parker, C. A.; Braciale, T. J.; Desai, B. N.

10.1101/330233 — immunology — Posted on 2018-05-25

598 Toxicity of TiO2, SiO2, ZnO, CuO, Au and Ag engineered nanoparticles on hatching and early nauplii of Artemia sp.

Rohit, R.; Murthy, C. L. N.; Idris, M. M.; Singh, S.

10.1101/329201 — ecology — Posted on 2018-05-25

599 Controlling for contaminants in low biomass 16S rRNA gene sequencing experiments

Karstens, L.; Asquith, M.; Davin, S.; Fair, D.; Gregory, W. T.; Wolfe, A. J.; Braun, J.; McWeeney, S.

10.1101/329854 — bioinformatics — Posted on 2018-05-25

600 Preoperative predictions of in-hospital mortality using electronic medical record data

Hill, B.; Brown, R. P.; Gabel, E.; Lee, C.; Cannesson, M.; Olde Loohuis, L.; Johnson, R.; Jew, B.; Maoz, U.; Mahajan, A.; Sankararaman, S.; Hofer, I.; Halperin, E.

10.1101/329813 — bioinformatics — Posted on 2018-05-25

601 Coral: Clear and customizable visualization of human kinome data

Metz, K.; Deoudes, E. M.; Berginski, M. E.; Jimenez-Ruiz, I.; Aksoy, B. A.; Hammerbacher, J.; Gomez, S. M.; Phanstiel, D. H.

10.1101/330274 — bioinformatics — Posted on 2018-05-25

602 Base-pair Ambiguity and the Kinetics of RNA Folding: a Hypothesis-Driven Statistical Analysis

Zhou, G.; Loper, J.; Geman, S.

10.1101/329698 — bioinformatics — Posted on 2018-05-25

603 Relative value perception in an insect: positive and negative incentive contrasts in ants

Wendt, S.; Roider, A.; Czaczkes, T. J.

10.1101/330241 — animal behavior and cognition — Posted on 2018-05-25

604 Defining p53 pioneering capabilities with competitive nucleosome binding assays

Yu, X.; Buck, M. J.

10.1101/327635 — genomics — Posted on 2018-05-25

605 Phenome-wide association analysis of LDL-cholesterol lowering genetic variants in PCSK9

Schmidt, A. F.; Holmes, M. V.; Preiss, D.; Swerdlow, D. I.; Denaxas, S.; 155 additional authors, ; Hemingway, H.; Asselbergs, F.; Patel, R.; Keating, B. J.; Sattar, N.; Houlston, R.; Casas, J.; Hingorani, A. D.

10.1101/329052 — genetics — Posted on 2018-05-25

606 An ABCA4 loss-of-function mutation causes a canine form of Stargardt disease

Mäkeläinen, S.; Godia, M.; Hellsand, M.; Viluma, A.; Hahn, D.; Makdoumi, K.; Zeiss, C. J.; Mellersh, C.; Ricketts, S. L.; Narfström, K.; Hallböök, F.; Ekesten, B.; Andersson, G.; Bergström, T. F.

10.1101/329151 — genetics — Posted on 2018-05-25

607 Hhex regulates the specification and growth of the hepatopancreatic ductal system

Villasenor, A.; Gauvrit, S.; Collins, M. M.; Parajes, S.; Maischein, H.-M.; Stainier, D.

10.1101/330779 — developmental biology — Posted on 2018-05-25

608 Direct preparation of Cas9 ribonucleoprotein from E. coli for PCR-free seamless DNA assembly

li, w.; wang, f.; qiao, j.; liu, y.; ma, l.

10.1101/328468 — synthetic biology — Posted on 2018-05-25

609 Non-coding AUG circRNAs constitute an abundant and conserved subclass of circles

Stagsted, L. V. W.; Nielsen, K. M.; Daugaard, I.; Hansen, T. B.

10.1101/328104 — molecular biology — Posted on 2018-05-25

610 doublesex regulates sexually dimorphic beetle horn formation by integrating spatial and temporal developmental contexts in the Japanese rhinoceros beetle Trypoxylus dichotomus

Morita, S.; Ando, T.; Maeno, A.; Mizutani, T.; Mase, M.; Shigenobu, S.; Niimi, T.

10.1101/328120 — developmental biology — Posted on 2018-05-25

611 Integrated Molecular Profiling Studies to Characterize the Cellular Origins of High-Grade Serous Ovarian Cancer

Lawrenson, K.; Fonseca, M.; Segato, F.; Lee, J.; Corona, R.; Seo, J.-H.; Coetzee, S.; Lin, Y.; Pejovic, T.; Mhawech-Fauceglia, P.; Drapkin, R.; Karlan, B.; Hazelett, D.; Freedman, M.; Gayther, S.; Noushmehr, H.

10.1101/330597 — cancer biology — Posted on 2018-05-25

612 Modelling structural determinants of ventilation heterogeneity: a perturbative approach.

Whitfield, C. A.; Horsley, A.; Jensen, O. E.

10.1101/329961 — biophysics — Posted on 2018-05-25

613 Distinct Patterns of the Autofluorescence of Body Surface: Potential Novel Diagnostic Biomarkers for Stable Coronary Artery Disease and Myocardial Infarction

Qu, X.; Li, Y.; Tao, Y.; Zhang, M.; Wu, D.; Guan, S.; Han, W.; Ying, W.

10.1101/330985 — biophysics — Posted on 2018-05-25

614 TRPV4 interacts with mitochondrial proteins and acts as a mitochondrial structure-function regulator

Kumar, A.; Majhi, R. K.; Acharya, T. K.; Smalla, K.-H.; Gundelfinger, E. D.; Goswami, C.

10.1101/330993 — cell biology — Posted on 2018-05-25

615 NetrinG1/NGL-1 Axis promotes pancreatictumorigenesis through cancer associated fibroblastderived nutritional supply and immunosuppression

Francescone, R.; Barbosa Vendramini-Costa, D.; Wagner, J.; Muir, A.; Franco-Barraza, J.; Gabitova, L.; Pazina, T.; Luong, T.; Shah, N.; Rollins, D.; Gupta, S.; Thapa, R.; Restifo, D.; Lau, A.; Zhou, Y.; Cai, K. Q.; Hensley, H.; Nicolas, E.; Kruger, W.; Devarajan, K.; Balachandran, S.; El-Deiry, W. S.; Vander Heiden, M.; Campbell, K. S.; Astsaturov, I.; Cukierman, E.

10.1101/330209 — cancer biology — Posted on 2018-05-25

616 Transcription factor TAp73 and miRNA-449 cooperate in multiciliogenesis

Wildung, M.; Esser, T. U.; Grausam, K. B.; Wiedwald, C.; Li, L.; Zylla, J. L. S.; Günther, A.-K.; Wienken, M.; Ercetin, E.; Bremmer, F.; Shomroni, O.; Andreas, S.; Zhao, H.; Lize, M.

10.1101/273375 — cell biology — Posted on 2018-05-25

617 Patterns of tumor progression predict small and tissue-specific tumor-originating niches

Buder, T.; Deutsch, A.; Klink, B.; Voss-Böhme, A.

10.1101/330175 — cancer biology — Posted on 2018-05-25

618 Contemporary circulating enterovirus D68 strains show differential viral entry and replication in human neuronal cells

Brown, D. M.; Hixon, A. M.; Oldfield, L. M.; Zhang, Y.; Novotny, M.; Wang, W.; Das, S. R.; Shabman, R. S.; Tyler, K. L.; Scheuermann, R. H.

10.1101/331116 — microbiology — Posted on 2018-05-25

619 Mapping DNA sequence to transcription factor binding energy in vivo

Barnes, S. L.; Belliveau, N. M.; Ireland, W. T.; Kinney, J. B.; Phillips, R.

10.1101/331124 — biophysics — Posted on 2018-05-25

620 Reactive Initiation Training is more effective than Shuttle Run to improve the on-court agility of novice badminton players

Dong, M.; Lyu, J.; Hart, T.; ZHU, Q.

10.1101/331058 — physiology — Posted on 2018-05-25

621 Effects of gap junction misexpression on synapses between auditory sensory neurons and the giant fiber of Drosophila melanogaster.

Blagburn, J. M.; Jezzini, S. H.; Merced, A.

10.1101/331074 — neuroscience — Posted on 2018-05-25

622 Cofilin-actin rod formation in neuronal processes after brain ischemia

Won, S. J.; Minnella, A. M.; Wu, L.; Eun, C. H.; Rome, E.; Shaw, A. E.; Herson, P. S.; Bamburg, J. R.; Swanson, R. A.

10.1101/331082 — neuroscience — Posted on 2018-05-25

623 ZIKA VIRUS INFECTION AT MID-GESTATION RESULTS IN FETAL CEREBRAL CORTICAL INJURY AND FETAL DEATH IN THE OLIVE BABOON.

Gurung, S.; Reuter, N.; Preno, A.; Dubaut, J.; Nadeau, H.; Hyatt, K.; Singleton, K.; Martin, A.; Parks, W. T.; Papin, J.; Myers, D. A.

10.1101/331108 — neuroscience — Posted on 2018-05-25

624 Nr5a1 suppression during the fetal period optimizes ovarian development by fine-tuning of Notch signaling

Nomura, R.; Kashimada, K.; Suzuki, H.; Zhao, L.; Tsuji, A. H.; Yagita, H.; Takagi, M.; Kanai, Y.; Bowles, J.; Koopman, P.; Kanai-Azuma, M.; Morio, T.

10.1101/331090 — developmental biology — Posted on 2018-05-25

625 Hydrogen-based metabolism - An ancestral trait in lineages sibling to the Cyanobacteria

Matheus Carnevali, P. B.; Schulz, F.; Castelle, C. J.; Kantor, R.; Shih, P.; Sharon, I.; Santini, J.; Olm, M.; Amano, Y.; Thomas, B. C.; Anantharaman, K.; Burstein, D.; Becraft, E. D.; Stepanauskas, R.; Woyke, T.; Banfield, J. F.

10.1101/328856 — microbiology — Posted on 2018-05-25

626 Oral health-related quality of life in elderly women participating in a coexistence group in southern Brazil

Dallasta, T. C.; Medina, V. B.; Dallepiane, L. B.

10.1101/331066 — epidemiology — Posted on 2018-05-25

627 A physiological drop in pH decreases mitochondrial respiration, and AMPK and Akt signalling, in L6 myocytes

Genders, A. J.; Martin, S. D.; McGee, S. L.; Bishop, D. J.

10.1101/330662 — cell biology — Posted on 2018-05-25

628 Heavy metal sensitivities of gene deletion strains for ITT1 and RPS1A connect their activities to the expression of URE2, a key gene involved in metal detoxification in yeast

Moteshareie, H.; Hajikarimlou, M.; Mulet Indrayanti, A.; Burnside, D.; Paula Dias, A.; Lettl, C.; Ahmed, D.; Omidi, K.; Kazmirchuk, T.; Puchacz, N.; Zare, N.; Takallou, S.; Naing, T.; Hernandez, R. B.; Willmore, W. G.; Babu, M.; McKay, B.; Samanfar, B.; Holcik, M.; Golshani, A.

10.1101/331009 — genomics — Posted on 2018-05-25

629 Pleotropic effects of PPARD accelerate colorectal tumor progression and invasion

Liu, Y.; Deguchi, Y.; Tian, R.; Wei, D.; Chen, W.; Xu, M.; Wu, L.; Liu, F.; Gao, S.; Jaoude, J.; Chrieki, S. P.; Moussalli, M. J.; Gagea, M.; Morris, J. S.; Broaddus, R.; Zuo, X.; Shureiqi, I.

10.1101/325001 — cancer biology — Posted on 2018-05-24

630 The QNOAEL vs. BMD for Point of Departure

Dickerson, C.; Lodder, R. A.

10.1101/329763 — pharmacology and toxicology — Posted on 2018-05-24

631 Systematic Discovery of the Functional Impact of Somatic Genome Alterations in Individual Tumors through Tumor-specific Causal Inference

Cai, C.; Cooper, G.; Lu, K.; Ma, X.; Xu, S.; Zhao, Z.; Chen, X.; Xue, Y.; Lee, A.; Clark, N.; Chen, V.; Lu, S.; Chen, L.; Yu, L.; Hochheiser, H.; Jiang, X.; Wang, J.; Lu, X.

10.1101/329375 — cancer biology — Posted on 2018-05-24

632 Is there a problem with methods skills in cognitive neuroscience? Evidence from an online survey.

Hauk, O.

10.1101/329458 — scientific communication and education — Posted on 2018-05-24

633 Auditory evoked potentials to changes in speech sound duration in anesthetized mice

Lipponen, A.; Kurkela, J. L. O.; Kylaheiko, I.; Holtta, S.; Ruusuvirta, T.; Astikainen, P.

10.1101/329433 — neuroscience — Posted on 2018-05-24

634 Its not you, its me: Corollary discharge in precerebellar nuclei of sleeping infant rats

Blumberg, M. S.; Sokoloff, G.; Mukherjee, D.

10.1101/329540 — neuroscience — Posted on 2018-05-24

635 Evidence for Alternative Complement Cascade Activation in Primary CNS Vasculitis

Mandel-Brehm, C.; Retallack, H.; Knudsen, G. M.; Yamana, A.; Hajj-Ali, R. A.; Calabrese, L. H.; Tihan, T.; Sample, H. A.; Zorn, K. C.; Gorman, M. P.; Madan Cohen, J.; Sreih, A. G.; Marcus, J. F.; Josephson, S. A.; Douglas, V. C.; Gelfand, J. M.; Wilson, M. R.; DeRisi, J. L.

10.1101/329862 — immunology — Posted on 2018-05-24

636 GaKCo: a Fast GApped k-mer string Kernel using COunting

Singh, R.; Sekhon, A.; Kowsari, K.; Lanchantin, J.; Wang, B.; Qi, Y.

10.1101/329425 — bioinformatics — Posted on 2018-05-24

637 The marine goby - alpheid shrimp symbiosis does not correlate with larger fish eye size

Stiefel, K. M.; Reyes, R. B.

10.1101/329094 — evolutionary biology — Posted on 2018-05-24

638 Relevance of coral geometry in the outcomes of the coral-algal benthic war

George, E. E.; Mullinix, J.; Meng, F.; Bailey, B.; Edwards, C.; Felts, B.; Haas, A.; Hartmann, A. C.; Mueller, B.; Nulton, J.; Roach, T. N. F.; Salamon, P.; Silveira, C. B.; Vermeij, M. J. A.; Rohwer, F. L.; Luque, A.

10.1101/327031 — ecology — Posted on 2018-05-24

639 Mechanisms of trophic niche compression: evidence from landscape disturbance

Burdon, F. J.; McIntosh, A. R.; Harding, J. S.

10.1101/329623 — ecology — Posted on 2018-05-24

640 MTAP loss correlates with an immunosuppressive profile in GBM and its substrate MTA stimulates alternative macrophage polarization

Hansen, L.; Yang, R.; Woroniecka, K. I.; Chen, L.; Yan, H.; He, Y.

10.1101/329664 — cancer biology — Posted on 2018-05-24

641 OUTRIDER: A statistical method for detecting aberrantly expressed genes in RNA sequencing data

Brechtmann, F.; Matuseviciute, A.; Mertes, C.; Yepez, V. A.; Avsec, Z.; Herzog, M.; Bader, D. M.; Prokisch, H.; Gagneur, J.

10.1101/322149 — bioinformatics — Posted on 2018-05-24

642 Identification of a post-transcriptional regulatory element that responds to glucose in the African trypanosome

Qiu, Y.; Shankar, V.; Noorai, R. E.; Yeung, N.; McAlpine, S. G.; Morris, J.

10.1101/327346 — genetics — Posted on 2018-05-24

643 Genomics of microgeographic adaptation in the Amazonian hyperdominant tree Eperua falcata Aubl. (Fabaceae).

Brousseau, L.; Fine, P. V. A.; Dreyer, E.; Vendramin, G. G.; Scotti, I.

10.1101/312843 — evolutionary biology — Posted on 2018-05-24

644 Neutrophil microvesicles drive atherosclerosis by delivering miR-155 to atheroprone endothelium.

Gomez, I.; Ward, B.; Souilhol, C.; Recarti, C.; Ariaans, M.; Johnston, J.; Burnett, A.; Mahmoud, M.; Luong, L. A.; West, L.; Long, M.; Parry, S.; Woods, R.; Hulston, C.; Benedikter, B.; Bazaz, R.; Francis, S.; Kiss-Toth, E.; van Zandvoort, M.; Schober, A.; Hellewell, P.; Evans, P.; Ridger, V.

10.1101/319392 — cell biology — Posted on 2018-05-24

645 Crystal Structure of Human Nocturnin Catalytic Domain

Estrella, M.; Du, J.; Korennykh, A.

10.1101/330514 — biophysics — Posted on 2018-05-24

646 Information-dense transcription factor binding site clusters identify target genes with similar tissue-wide expression profiles and serve as a buffer against mutations

Lu, R.; Rogan, P. K.

10.1101/283267 — bioinformatics — Posted on 2018-05-24

647 Combined single cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity

Linker, S. M.; Urban, L.; Clark, S.; Chhatriwala, M.; Amatya, S.; McCarthy, D.; Ebersberger, I.; Vallier, L.; Reik, W.; Stegle, O.; Bonder, M. J.

10.1101/328138 — bioinformatics — Posted on 2018-05-24

648 Clarification and confocal imaging of the non-human primate placental micro-anatomy

Sargent, J.; Roberts, V.; Gaffney, J.; Frias, A.

10.1101/330647 — pathology — Posted on 2018-05-24

649 Fundamental Units of Inter-Individual Variation in Resting State Connectomes

Sripada, C.; Angstadt, M.; Rutherford, S.; Kessler, D.; Kim, Y.; Yee, M.; Levina, L.

10.1101/326082 — neuroscience — Posted on 2018-05-24

650 CD95L mRNA is toxic to cells

Putzbach, W.; Haluck-Kangas, A.; Gao, Q. Q.; Sarshad, A. A.; Bartom, E. T.; Stults, A.; Qadir, A. S.; Hafner, M.; Peter, M. E.

10.1101/330324 — cancer biology — Posted on 2018-05-24

651 Automated High-Throughput Light-Sheet Fluorescence Microscopy of Larval Zebrafish

Logan, S. L.; Dudley, C.; Baker, R. P.; Taormina, M. J.; Hay, E. A.; Parthasarathy, R.

10.1101/330639 — bioengineering — Posted on 2018-05-24

652 Virus and CTL dynamics in the extra-follicular and follicular tissue compartments in SIV-infected macaques

Wodarz, D.; Skinner, P. J.; Levy, D. N.; Connick, E.

10.1101/330217 — systems biology — Posted on 2018-05-24

653 Examining the Role of the Surfactant Family Member SFTA3 in Interneuron Specification

Chen, C.; Anderson, N.; Becker, S.; Schicht, M.; Stoddard, C.; Bräuer, L.; Paulsen, F.; Grabel, L.

10.1101/330621 — neuroscience — Posted on 2018-05-24

654 Mice deficient in nucleoporin Nup210 develop peripheral T cell alterations

Van Nieuwenhuijze, A.; Malengier-Devlies, B.; Cauwe, B.; Humblet-Baron, S.; Liston, A.

10.1101/330522 — immunology — Posted on 2018-05-24

655 Loss of glutathione redox homeostasis impairs proteostasis by inhibiting autophagy-dependent protein degradation

Guerrero-Gomez, D.; Mora-Lorca, J. A.; Saenz-Narciso, B.; Naranjo-Galindo, F. J.; Munoz-Lobato, F.; Parrado-Fernandez, C.; Cedazo-Minguez, A.; Link, C. D.; Neri, C.; Sequedo, M. D.; Vazquez-Manrique, R. P.; Fernandez-Suarez, E.; Goder, V.; Panet, R.; Cabiscol, E.; Askjaer, P.; Cabello, J.; Miranda-Vizuete, A.

10.1101/309849 — genetics — Posted on 2018-05-24

656 Best Practices for Benchmarking Germline Small Variant Calls in Human Genomes

Krusche, P.; Trigg, L.; Boutros, P. C.; Mason, C. E.; De La Vega, F. M.; Moore, B. L.; Gonzalez-Porta, M.; Eberle, M. A.; Tezak, Z.; Labadibi, S.; Truty, R.; Asimenos, G.; Funke, B.; Fleharty, M.; Chapman, B. A.; Salit, M.; Zook, J. M.; Global Alliance for Genomics and Health Benchmarking Team,

10.1101/270157 — genomics — Posted on 2018-05-24

657 Molecular phenotyping using networks, diffusion, and topology: soft tissue sarcoma

Mathews, J.; Pouryahya, M.; Moosmueller, C.; Kevrekidis, I.; Deasy, J.; Tannenbaum, A.

10.1101/328054 — cancer biology — Posted on 2018-05-24

658 Fibroblasts and alectinib switch the evolutionary games that non-small cell lung cancer plays

Kaznatcheev, A.; Peacock, J.; Basanta, D.; Marusyk, A.; Scott, J. G.

10.1101/179259 — cancer biology — Posted on 2018-05-24

659 Single-Cell Sequencing of Primate Preimplantation Embryos Reveals Chromosome Elimination Via Cellular Fragmentation and Blastomere Exclusion

Daughtry, B. L.; Rosenkrantz, J. L.; Lazar, N. H.; Fei, S. S.; Redmayne, N.; Torkenczy, K. A.; Adey, A.; Gao, L.; Park, B.; Nevonen, K. A.; Carbone, L.; Chavez, S. L.

10.1101/241851 — developmental biology — Posted on 2018-05-24

660 Major concerns with the integrity of the mitochondrial ADP/ATP carrier in dodecyl-phosphocholine used for solution NMR studies

King, M. S.; Ruprecht, J. R.; Crichton, P. G.; Kunji, E. R.

10.1101/329490 — biophysics — Posted on 2018-05-24

661 A new in vitro assay measuring direct interaction of nonsense suppressors with the eukaryotic protein synthesis machinery

Ng, M. Y.; Zhang, H.; Weil, A.; Singh, V.; Jamiolkowski, R. M.; Baradaran-Heravi, A.; Roberge, M.; Jacobson, A.; Friesen, W.; Welch, E.; Goldman, Y.; Cooperman, B. S.

10.1101/330506 — biochemistry — Posted on 2018-05-24

662 Physiological starvation increases EGF-Ras-MAPK pathway activity during C. elegans vulval induction

Braendle, C.; Grimbert, S.; Vargas Velazquez, A. M.

10.1101/329573 — genetics — Posted on 2018-05-24

663 Pre-existing Technological Core and Roots for the CRISPR Breakthrough

Magee, C. L.; Kleyn, P. W.; monks, b. m.; Betz, U.; Basnet, S.

10.1101/329706 — bioengineering — Posted on 2018-05-24

664 Predicting Response to Platin Chemotherapy Agents with Biochemically-inspired Machine Learning

Mucaki, E. J.; Zhao, J. Z. L.; Lizotte, D.; Rogan, P. K.

10.1101/231712 — pharmacology and toxicology — Posted on 2018-05-24

665 RelTime relaxes the strict molecular clock throughout the phylogeny

Battistuzzi, F. U.; Tao, Q.; Jones, L.; Tamura, K.; Kumar, S.

10.1101/220194 — evolutionary biology — Posted on 2018-05-24

666 Neural mechanisms underlying the precision of visual working memory

Zhao, Y.; Kuai, S.; Zanto, T.; Ku, Y.

10.1101/330118 — neuroscience — Posted on 2018-05-24

667 Developmental constraints on genome evolution in four bilaterian model species

Liu, J.; Robinson-Rechavi, M.

10.1101/161679 — evolutionary biology — Posted on 2018-05-24

668 Learning causal biological networks with the principle of Mendelian randomization

Badsha, M. B.; Fu, A. Q.

10.1101/171348 — bioinformatics — Posted on 2018-05-24

669 Transcranial alternating current stimulation at 10 Hz modulates response bias in the Somatic Signal Detection Task

Craddock, M.; Klepousniotou, E.; El-Deredy, W.; Poliakoff, E.; Lloyd, D. M.

10.1101/330134 — neuroscience — Posted on 2018-05-24

670 Understanding How Microbiomes Influence the Systems they Inhabit: Moving from a correlative to a causal research framework

Hall, E.; Bernhardt, E.; Bier, R.; Bradford, M.; Boot, C.; Cotner, J.; del Giorgio, P.; Evans, S.; Graham, E.; Jones, S.; Lennon, J.; Locey, K.; Nemergut, D.; Osborne, B.; Rocca, J.; Schimel, J.; Wallenstein, M.

10.1101/065128 — microbiology — Posted on 2018-05-24

671 Gene function contributes to gene expression levels in S. cerevisiae

Hickman, M. J.; Jackson, A.; Smith, A.; Thornton, J.; Tursi, A.

10.1101/330365 — genetics — Posted on 2018-05-24

672 Chromatin at X-linked repeats that guide dosage compensation in Drosophila melanogaster is modulated by the siRNA pathway

Deshpande, N.; Meller, V. H.

10.1101/330423 — genetics — Posted on 2018-05-24

673 When is a fish stock collapsed?

Yletyinen, J.; Butler, W. E.; Ottersen, G.; Andersen, K. H.; Bonanomi, S.; Diekert, F. K.; Folke, C.; Lindegren, M.; Nordstrom, M.; Richter, A.; Rogers, L.; Romagnoni, G.; Weigel, B.; Whittington, J. D.; Blenckner, T.; Stenseth, N. C.

10.1101/329979 — ecology — Posted on 2018-05-24

674 ATM orchestrates the DNA-damage response to counter toxic non-homologous end-joining at broken replication forks

Balmus, G.; Pilger, D.; Coates, J.; Demir, M.; Sczaniecka-Clift, M.; Barros, A.; Woods, M.; Fu, B.; Yang, F.; Chen, E.; Ostermaier, M.; Stankovic, T.; Ponstingl, H.; Herzog, M.; Yusa, K.; Munoz-Martinez, F.; Durant, S. T.; Galanty, Y.; Beli, P.; Adams, D. J.; Bradley, A.; Metzakopian, E.; Forment, J. V.; Jackson, S. P. P.

10.1101/330043 — cell biology — Posted on 2018-05-24

675 Strategic allocation of working memory resource

Yoo, A. H.; Klyszejko, Z.; Curtis, C. E.; Ma, W. J.

10.1101/329870 — neuroscience — Posted on 2018-05-24

676 Desynchronizing to be faster? Perceptual- and attentional-modulation of brain rhythms in sub-millisecond scale

NOGUCHI, Y.; Xia, Y.; Kakigi, R.

10.1101/329896 — neuroscience — Posted on 2018-05-24

677 A heuristic method for fast and accurate phasing and imputation of single nucleotide polymorphism data in bi-parental plant populations

Gonen, S.; Wimmer, V.; Gaynor, R. C.; Byrne, E.; Gorjanc, G.; Hickey, J. M.

10.1101/330027 — genomics — Posted on 2018-05-24

678 Dynamics of corticospinal motor control during overground and treadmill walking in humans

Roeder, L.; Boonstra, T. W.; Smith, S. S.; Kerr, G. K.

10.1101/177915 — physiology — Posted on 2018-05-24

679 Positive memory specificity reduces adolescent vulnerability to depression

Askelund, A. D.; Schweizer, S.; Goodyer, I. M.; van Harmelen, A.-L.

10.1101/329409 — neuroscience — Posted on 2018-05-24

680 Olive mild mosaic virus coat protein and p6 are suppressors of RNA silencing and their silencing confers resistance against OMMV

Varanda, C.; Materatski, P.; Campos, M. D.; Clara, M. I.; Nolasco, G.; Felix, M. R.

10.1101/329920 — molecular biology — Posted on 2018-05-24

681 Quantifying heterogeneity of stochastic gene expression

Iida, K.; Obata, N.; Kimura, Y.

10.1101/316166 — biophysics — Posted on 2018-05-24

682 The African Bullfrog (Pyxicephalus adspersus) genome unites the two ancestral ingredients formaking vertebrate sex chromosomes

Denton, R. D.; Kudra, R. S.; Malcom, J. W.; Du Preez, L.; Malone, J. H.

10.1101/329847 — genomics — Posted on 2018-05-24

683 Background selection and the statistics of population differentiation: consequences for detecting local adaptation

Matthey-Doret, R.; Whitlock, M. C.

10.1101/326256 — evolutionary biology — Posted on 2018-05-24

684 The high turnover of ribosome-associated transcripts from de novo ORFs produces gene-like characteristics available for de novo gene emergence in wild yeast populations

Durand, E.; Gagnon-Arsenault, I.; Hatin, I.; Nielly-Thibault, L.; Namy, O.; Landry, C. R.

10.1101/329730 — evolutionary biology — Posted on 2018-05-24

685 Long noncoding RNA ANRIL supports proliferation of adult T-cell leukemia cells through cooperation with EZH2

Song, Z.; Wu, W.; Chen, M.; Cheng, W.; Yu, J.; Fang, J.; Xu, L.; Yasunaga, J.-i.; Matsuoka, M.; Zhao, T.

10.1101/329912 — cancer biology — Posted on 2018-05-24

686 Improved G-AgarTrap: A highly efficient transformation method for intact gemmalings of the liverwort Marchantia polymorpha

Tsuboyama, S.; Nonaka, S.; Ezura, H.; Kodama, Y.

10.1101/329839 — plant biology — Posted on 2018-05-24

687 Molecular definition of group 1 innate lymphoid cells in the mouse uterus

Filipovic, I.; Chiossone, L.; Vacca, P.; Hamilton, R.; Ingegnere, T.; Doisne, J.-M.; Hawkes, D. A.; Mingari, M. C.; Sharkey, A.; Moretta, L.; Colucci, F.

10.1101/330068 — immunology — Posted on 2018-05-24

688 Unperturbed Expression Bias of Imprinted Genes in Schizophrenia

Gulyas-Kovacs, A.; Keydar, I.; Xia, E.; Fromer, M.; Hoffman, G.; Ruderfer, D.; Consortium, C.; Sachidanandam, R.; Chess, A.

10.1101/329748 — genomics — Posted on 2018-05-24

689 mitoNEET Regulates Mitochondrial Iron Homeostasis Interacting with Transferrin Receptor

Furihata, T.; Takada, S.; Maekawa, S.; Mizushima, W.; Watanabe, M.; Takahashi, H.; Fukushima, A.; Tsuda, M.; Matsumoto, J.; Kakutani, N.; Yokota, T.; Otsuka, Y.; Matsushima, S.; Matsumoto, M.; Nakayama, K. I.; Nio-Kobayashi, J.; Iwanaga, T.; Sabe, H.; Hatakeyama, S.; Tsutsui, H.; Kinugawa, S.

10.1101/330084 — cell biology — Posted on 2018-05-24

690 Joint precursor elution profile inference via regression for peptide detection in data-independent acquisition mass spectra

Hu, A. K.; Lu, Y. Y.; Bilmes, J.; Noble, W. S.

10.1101/329805 — bioinformatics — Posted on 2018-05-24

691 Mapping molecular HLA typing data to UNOS antigen equivalents for improved virtual crossmatch

Kaur, N.; Kransdorf, E. P.; Pando, M. J.; Maiers, M.; Ray, B.; Lee, J.-H.; Lalli, P.; Murphey, C. L.; Bray, R. A.; Gragert, L.

10.1101/328914 — bioinformatics — Posted on 2018-05-24

692 Luciferase of the Japanese syllid polychaete Odontosyllis umdecimdonta

Schultz, D. T.; Kotlobay, A. A.; Ziganshin, R.; Bannikov, A.; Markina, N. M.; Chepurnyh, T. V.; Shakhova, E. S.; Palkina, K.; Haddock, S. H.; Yampolsky, I. V.; Oba, Y.

10.1101/329631 — biochemistry — Posted on 2018-05-24

693 Impairment of neuronal mitophagy by mutant huntingtin

Martinez-Vicente, M.; Franco-Iborra, S.; Plaza-Zabala, A.; Sebastian, D.; Vila Bover, M.

10.1101/330001 — neuroscience — Posted on 2018-05-24

694 Positive memory specificity reduces adolescent vulnerability to depression

Askelund, A. D.; Schweizer, S.; Goodyer, I. M.; van Harmelen, A.-L.

10.1101/329409 — neuroscience — Posted on 2018-05-24

695 Continuity and discontinuity in human cortical development and change from embryonic stages to old age

Fjell, A.; Chen, C.-H.; Sederevicius, D.; Sneve, M. H.; Grydeland, H.; Krogsrud, S. K.; Amlien, I. K.; Ferschmann, L.; Ness, H.; Folvik, L.; Beck, D.; Mowinckel, A. M.; Tamnes, C. K.; Westerhausen, R.; Haaberg, A. K.; Dale, A. M.; Walhovd, K. B.

10.1101/329680 — neuroscience — Posted on 2018-05-24

696 Critical role for Piccolo in Synaptic Vesicle Retrieval

Ackermann, F.; Schink, K. O.; Bruns, C.; Izsvak, Z.; Hamra, K.; Rosenmund, C.; Garner, C. C.

10.1101/330050 — neuroscience — Posted on 2018-05-24

697 Stochastic rank aggregation for the identification of functional neuromarkers

Galdi, P.; Fratello, M.; Trojsi, F.; Russo, A.; Tedeschi, G.; Tagliaferri, R.; Esposito, F.

10.1101/329383 — neuroscience — Posted on 2018-05-24

698 Synchrony surfacing: epicortical recording of correlated action potentials

Bockhorst, T.; Pieper, F.; Engler, G.; Stieglitz, T.; Galindo-Leon, E.; Engel, A. K.

10.1101/329342 — neuroscience — Posted on 2018-05-24

699 Bistable bacterial growth dynamics in the presence of antimicrobial agents

Frenkel, N.; Saar Dover, R.; Titon, E.; Shai, Y.; Rom-Kedar, V.

10.1101/330035 — microbiology — Posted on 2018-05-24

700 Structural Basis for Receptor Recognition by Lujo Virus

Cohen-Dvashi, H.; Kilimnik, I.; Diskin, R.

10.1101/329482 — microbiology — Posted on 2018-05-24

701 Temporal changes in gut microbiota and signaling molecules of the gut-brain axis in mice fed meat protein diets

Xie, Y.; Zhou, G.; Wang, C.; Xu, X.; Li, C.

10.1101/329953 — microbiology — Posted on 2018-05-24

702 De novo mutations drive the spread of macrolide resistant Mycoplasma genitalium: mathematical modelling study

Cadosch, D.; Garcia, V.; Althaus, C. L.; Jensen, J. S.; Low, N.

10.1101/321216 — microbiology — Posted on 2018-05-24

703 Genome Wide Interaction Studies Identify Sex-Specific Risk Alleles for Nonsyndromic Orofacial Clefts

Carlson, J.; Nidey, N.; Butali, A.; Buxo Martinez, C.; Christensen, K.; Deleyiannis, F.; Hecht, J.; Field, L. L.; Moreno-Uribe, L.; Orioli, I.; Poletta, F.; Padilla, C.; Vieira, A.; Weinberg, S.; Wehby, G.; Feingold, E.; Murray, J.; Marazita, M.; Leslie, E.

10.1101/329599 — genetics — Posted on 2018-05-24

704 Biparental inheritance of chloroplasts is controlled by lipid biosynthesis

Sobanski, J.; Giavalisco, P.; Fischer, A.; Walther, D.; Schoettler, M. A.; Pellizzer, T.; Golczyk, H.; Obata, T.; Bock, R.; Sears, B. B.; Greiner, S.

10.1101/330100 — genetics — Posted on 2018-05-24

705 Co-exposure to multiple Ranavirus types enhances viral infectivity and replication in a larval amphibian system

Mihaljevic, J.; Hoverman, J.; Johnson, P.

10.1101/329821 — ecology — Posted on 2018-05-24

706 Size-by-environment interactions: a neglected dimension of species’ responses to environmental variation

Tredennick, A.; Teller, B. J.; Adler, P. B.; Hooker, G.; Ellner, S. P.

10.1101/329771 — ecology — Posted on 2018-05-24

707 Autophagy determines osimertinib resistance through regulation of stem cell-like properties in EGFR-mutant lung cancer

Li, L.; Wang, Y.; Jiao, L.; Lin, C.; Lu, C.; Zhang, K.; Hu, C.; Ye, J.; Zhang, D.; Feng, M.; He, Y.

10.1101/330092 — cancer biology — Posted on 2018-05-24

708 Interactive single cell RNA-Seq analysis with the Single Cell Toolkit (SCTK)

Jenkins, D. F.; Faits, T.; Briars, E.; Carrasco Pro, S.; Cunningham, S.; Campbell, J. D.; Yajima, M.; Johnson, W. E.

10.1101/329755 — bioinformatics — Posted on 2018-05-24

709 CellexalVR: A virtual reality platform for the exploration and analysis of single-cell gene expression data

Legetth, O.; Rodhe, J.; Palsson, J.; Wallergard, M.; Lang, S.; Soneji, S.

10.1101/329102 — bioinformatics — Posted on 2018-05-24

710 A genome-scale metabolic model for Methylococcus capsulatus predicts reduced efficiency uphill electron transfer to pMMO.

Lieven, C.; Petersen, L. A. H.; Jorgensen, S. B.; Gernaey, K.; Herrgard, M.; Sonnenschein, N.

10.1101/329714 — systems biology — Posted on 2018-05-24

711 Cortical states control visual spatial perception

Speed, A.; Del Rosario, J. P.; Burgess, C. P.; Haider, B.

10.1101/316398 — neuroscience — Posted on 2018-05-24

712 In vitro and In vivo characterization of NOSO-502, a novel inhibitor of bacterial translation

Racine, E.; Nordmann, P.; Pantel, L.; Sarciaux, M.; Serri, M.; Houard, J.; Villain-Guillot, P.; Demord, A.; Vingsbo Lundberg, C.; Gualtieri, M.

10.1101/329946 — microbiology — Posted on 2018-05-24

713 CD32+ and PD-1+ Lymph Node CD4 T Cells Support Persistent HIV-1 Transcription in Treated Aviremic Individuals

Noto, A.; Procopio, F.; Banga, R.; Suffiotti, M.; Corpataux, J.-M.; Cavassini, M.; Fenwick, C.; Gottardo, R.; Perreau, M.; Pantaleo, G.

10.1101/329938 — immunology — Posted on 2018-05-24

714 Numeric Analysis of Temperature Distribution in Man using a 3D Human Model

Mfolozi, S.; Malan, A.; Bello-Ochende, T.; Martin, L. J.

10.1101/330357 — physiology — Posted on 2018-05-24

715 The association between 25(OH)D levels, frailty status and adiposity indices in older adults

Santos, A. R.; Afonso, C.; Santos, A.; Borges, N.; Moreira, P.; Padrao, P.; Fonseca, I.; Amaral, T. F.

10.1101/330340 — epidemiology — Posted on 2018-05-24

716 RBPMetaDB: A comprehensive annotation of mouse RNA-Seq datasets with perturbations of RNA-binding proteins

Li, J.; Deng, S.-P.; Vieira, J.; Thomas, J.; Costa, V.; Tseng, C.-S.; Ivankovic, F.; Ciccodicola, A.; Yu, P.

10.1101/326116 — bioinformatics — Posted on 2018-05-24

717 Multiple Determinants and Consequences of Cohesion Fatigue in Mammalian Cells

Sapkota, H.; Wasiak, E.; Daum, J. R.; Gorbsky, G. J.

10.1101/240630 — cell biology — Posted on 2018-05-24

718 Stochastic models of cell invasion with fluorescent cell cycle indicators

Simpson, M. J.; Jin, W.; Vittadello, S. T.; Tambyah, T.; Ryan, J.; Gunasingh, G.; Haass, N.; McCue, S.

10.1101/273995 — biophysics — Posted on 2018-05-24

719 Piperazine-based HIV-1 entry inhibitors: Massive in silico library design and screening for gp120 attachment inhibitors.

Castillo-Pazos, D. J.; Romo-Mancillas, R. A.; Barroso-Flores, J.

10.1101/330142 — pharmacology and toxicology — Posted on 2018-05-24

720 Inhibition of classical and alternative modes of respiration in C. albicans leads to cell wall remodelling and increased macrophage recognition

Duvenage, L.; Walker, L. A.; Bojarczuk, A.; Johnston, S. A.; MacCallum, D. M.; Munro, C. A.; Gourlay, C.

10.1101/330167 — microbiology — Posted on 2018-05-24

721 A synthesis of mapping experiments reveals extensive genomic structural diversity in the Mimulus guttatus species complex

Flagel, L.; Blackman, B. K.; Fishman, L.; Monnahan, P. J.; Sweigart, A.; Kelly, J. K.

10.1101/330159 — genetics — Posted on 2018-05-24

722 Anthropometric and functional profiles of elite athletes from different categories at ABADA Capoeira World Championship

Almeida, L. G.; Numata Filho, E. S.; dos Santos, G. A. d. S. A.; Cardoso, J. T. C.; Moreira, S.

10.1101/330126 — physiology — Posted on 2018-05-24

723 Plasmodium falciparum mature schizont transcriptome variation among clinical isolates and laboratory-adapted clones

Tarr, S. J.; Diaz-Ingelmo, O.; Stewart, L. B.; Hocking, S. E.; Murray, L.; Duffy, C. W.; Otto, T. D.; Chappell, L.; Rayner, J. C.; Awandare, G. A.; Conway, D. J.

10.1101/329532 — cell biology — Posted on 2018-05-23

724 Photoacoustic imaging for the prediction and assessment of response to radiotherapy in vivo

Martinho Costa, M.; Shah, A.; Rivens, I.; Box, C.; OShea, T.; Bamber, J.; ter Haar, G.

10.1101/329516 — biophysics — Posted on 2018-05-23

725 Cell-associated, Heparin-like Molecules Modulate the Ability of LDL to Regulate PCSK9 Uptake

Galvan, A. M.; Chorba, J. S.

10.1101/329722 — biochemistry — Posted on 2018-05-23

726 Automated classification of synaptic vesicles in electron tomograms of C. elegans using machine learning

Kaltdorf, K. V.; Theiss, M.; Markert, S. M.; Zhen, M.; Dandekar, T.; Stigloher, C.; Kollmannsberger, P.

10.1101/291310 — neuroscience — Posted on 2018-05-23

727 Label-free prediction of three-dimensional fluorescence images from transmitted light microscopy

Ounkomol, C.; Seshamani, S.; Maleckar, M. M.; Collman, F.; Johnson, G.

10.1101/289504 — cell biology — Posted on 2018-05-23

728 Using Optimal F-Measure and Random Resampling in Gene Ontology Enrichment Calculations

Ge, W.; Fazal, Z.; Jakobsson, E.

10.1101/218248 — bioinformatics — Posted on 2018-05-23

729 Striking differences in patterns of germline mutation between mice and humans

Lindsay, S. J.; Rahbari, R.; Kaplanis, J.; Keane, T.; Hurles, M.

10.1101/082297 — genomics — Posted on 2018-05-23

730 Variation in competitive ability with mating system, ploidy and range expansion in four Capsella species

Yang, X.; Lascoux, M.; Glemin, S.

10.1101/214866 — evolutionary biology — Posted on 2018-05-23

731 Integrated Multi-omics Molecular Subtyping Predicts Therapeutic Vulnerability in Malignant Peritoneal Mesothelioma

Shrestha, R.; Nabavi, N.; Lin, Y.-Y.; Mo, F.; Anderson, S.; Volik, S.; Adomat, H. H.; Lin, D.; Xue, H.; Dong, X.; Shukin, R.; Bell, R. H.; McConeghy, B.; Haegert, A.; Brahmbhatt, S.; Li, E.; Oo, H. Z.; Hurtado-Coll, A.; Fazli, L.; Zhou, J.; McConnell, Y.; McCart, A.; Lowy, A.; Morin, G. B.; Daugaard, M.; Sahinalp, S. C.; Hach, F.; Le Bihan, S.; Gleave, M. E.; Wang, Y.; Churg, A.; Collins, C. C.

10.1101/243477 — cancer biology — Posted on 2018-05-23

732 Stepping into a dangerous quagmire: environmental determinants of human-lancehead pit vipers (Bothrops genus) contact resulting in injuries, Brazilian Amazon

Monteiro, W. M.; Alcantara, J. A.; Bernarde, P. S.; Sachett, J.; Silva, A.; Valente, S.; Peixoto, H.; Lacerda, M.; Oliveira, M. R.; Saraiva, I.; Sampaio, V.

10.1101/329649 — animal behavior and cognition — Posted on 2018-05-23

733 miR-21-5p and miR-30a-5p are identical in human and bovine, have similar isomiR distribution, and cannot be used to identify xenomiR uptake from cow milk

Fromm, B.; Tosar, J. P.; Lu, Y.; Halushka, M. K.; Witwer, K. W.

10.1101/275834 — molecular biology — Posted on 2018-05-23

734 CozEa and CozEb play overlapping and essential roles in controlling cell division in Staphylococcus aureus

Stamsas, G. A.; Myrbraten, I.; Straume, D.; Salehian, Z.; Veening, J.-W.; Havarstein, L. S.; Kjos, M.

10.1101/256560 — microbiology — Posted on 2018-05-23

735 Mass spectra alignment using virtual lock-masses

Brochu, F.; Plante, P.-L.; Drouin, A.; Laviolette, F.; Marchand, M.; Corbeil, J.

10.1101/292425 — bioinformatics — Posted on 2018-05-23

736 A Bayesian Mixture Modelling Approach For Spatial Proteomics

Crook, O. M.; Mulvey, C. M.; Kirk, P. D. W.; Lilley, K. S.; Gatto, L.

10.1101/282269 — systems biology — Posted on 2018-05-23

737 Cell type identity determines transcriptomic immune responses in Arabidopsis thaliana roots.

Rich, C.; Reitz, M.; Eichmann, R.; Hermann, S.; Jenkins, D. J.; Kogel, K.-H.; Esteban, E.; Ott, S.; Schafer, P.

10.1101/302448 — plant biology — Posted on 2018-05-23

738 Inferring Population Structure and Admixture Proportions in Low Depth NGS Data

Meisner, J.; Albrechtsen, A.

10.1101/302463 — genetics — Posted on 2018-05-23

739 Understanding the impact of crosslinked PCL/PEG/GelMA electrospun nanofibers on bactericidal activity

De-Paula, M. M. M.; Ghannadian, P.; Afewerki, S.; Marciano, F. R.; Viana, B. C.; Harb, S.; Bassous, N.; Webster, T. J.; Lobo, A. O.

10.1101/322321 — bioengineering — Posted on 2018-05-23

740 mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species

Arredondo-Alonso, S.; Rogers, M. R. C.; Braat, J. C.; Verschuuren, T. D.; Top, J.; Corander, J.; Willems, R. J. L.; Schurch, A. C.

10.1101/329045 — microbiology — Posted on 2018-05-23

741 The human cytomegalovirus ER resident glycoprotein UL148 activates the unfolded protein response

Siddiquey, M. N. A.; Zhang, H.; Nguyen, C. C.; Domma, A. J.; Kamil, J. P.

10.1101/328955 — microbiology — Posted on 2018-05-23

742 Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry

Pulit, S. L.; Stoneman, C.; Morris, A. P.; Wood, A. R.; Glastonbury, C. A.; Tyrrell, J.; Yengo, L.; Ferreira, T.; Marouli, E.; Ji, Y.; Yang, J.; Jones, S.; Beaumont, R.; Croteau-Chonka, D. C.; Winkler, T. W.; GIANT Consortium, ; Hattersley, A. T.; Loos, R. J. F.; Hirschhorn, J. N.; Visscher, P. M.; Frayling, T. M.; Yaghootkar, H.; Lindgren, C. M.

10.1101/304030 — genetics — Posted on 2018-05-23

743 A data mining paradigm for identifying key factors in biological processes using gene expression data

Li, J.; Zheng, L.; Uchiyama, A.; Bin, L.; Mauro, T. M.; Elias, P. M.; Pawelczyk, T.; Sakowicz-Burkiewicz, M.; Trzeciak, M.; Leung, D. Y. M.; Morasso, M. I.; Yu, P.

10.1101/327478 — bioinformatics — Posted on 2018-05-23

744 Homology-based loop modelling yields more complete crystallographic protein structures

van Beusekom, B.; Joosten, K.; Hekkelman, M. L.; Joosten, R.; Perrakis, A.

10.1101/329219 — bioinformatics — Posted on 2018-05-23

745 A tail of two sides: Artificially doubled false positive rates in neuroimaging due to the sidedness choice with t-tests

Chen, G.; Cox, R. W.; Glen, D. R.; Rajendra, J. K.; Reynolds, R. C.; Taylor, P. A.

10.1101/328567 — neuroscience — Posted on 2018-05-23

746 ATPase and protease domain movements in the bacterial AAA+ protease FtsH are driven by thermal fluctuations

Ruer, M.; Krainer, G.; Gröger, P.; Schlierf, M.

10.1101/323055 — molecular biology — Posted on 2018-05-23

747 HIV protease inhibitor Saquinavir inhibits toll-like receptor 4 activation by targeting receptor dimerization

Peng, C.; Deng, G.; Wang, Y.; Abdulwahab, A. W.; Luo, H.; Huang, F.; Xu, H.

10.1101/329003 — immunology — Posted on 2018-05-23

748 The dynamics of preferential host switching: host phylogeny as a key predictor of parasite prevalence and distribution

Engelstaedter, J.; Fortuna, N. Z.

10.1101/209254 — evolutionary biology — Posted on 2018-05-23

749 Heterogeneous Impacts of Protein-Stabilizing Osmolytes on Hydrophobic Interaction

Mukherjee, M.; Mondal, J.

10.1101/328922 — biophysics — Posted on 2018-05-23

750 Rapid alignment-free phylogenetic identification of metagenomic sequences

Linard, B.; Swenson, K.; Pardi, F.

10.1101/328740 — bioinformatics — Posted on 2018-05-23

751 Characterization and identification of long non-coding RNAs based on feature relationship

Wang, G.; Yin, H.; Li, B.; Yu, C.; Wang, F.; Xu, X.; Cao, J.; Bao, Y.; Wang, L.; Abbasi, A.; Bajic, V.; Ma, L.; Zhang, Z.

10.1101/327882 — bioinformatics — Posted on 2018-05-23

752 The Effects of Different Vibration Frequencies, Amplitudes and Contraction Levels on Lower Limb Muscles during Graded Isometric Contractions Superimposed on Whole Body Vibration Stimulation

Pujari, A. N.; Neilson, R. D.; Cardinale, M.

10.1101/317602 — bioengineering — Posted on 2018-05-23

753 Integrated accounts of behavioral and neuroimaging data using flexible recurrent neural network models

Dezfouli, A.; Morris, R.; Ramos, F.; Dayan, P.; Balleine, B. W.

10.1101/328849 — neuroscience — Posted on 2018-05-23

754 The 5’ untranslated region of the EFG1 transcript promotes its translation to regulate hyphal morphogenesis in Candida albicans

Desai, P. R.; Lengeler, K.; Kapitan, M.; Janssen, S. M.; Alepuz, P.; Jacobsen, I. D.; Ernst, J. F.

10.1101/328948 — microbiology — Posted on 2018-05-23

755 Genome-centric metagenomics revealed the spatial distribution and the diverse metabolic functions of lignocellulose degrading uncultured bacteria

Kougias, P.; Campanaro, S.; Treu, L.; Tsapekos, P.; Armani, A.; Angelidaki, I.

10.1101/328989 — microbiology — Posted on 2018-05-23

756 Inhibitor of sarco/endoplasmic reticulum calcium-ATPase impairs paramyxovirus replication

Kumar, N.; Barua, S.; Tripathi, B. N.; Khandelwal, N.; Riyesh, T.; Krishan, R. D.; Jangir, R. K.; Chander, Y.; Chaubey, K. K.; Singh, S. V.

10.1101/328997 — microbiology — Posted on 2018-05-23

757 Investigation of lanthanide-dependent methylotrophy uncovers complementary roles for alcohol dehydrogenase enzymes

Good, N. M.; Walser, O. N.; Moore, R. S.; Suriano, C.; Huff, A. F.; Martinez-Gomez, N. C.

10.1101/329011 — microbiology — Posted on 2018-05-23

758 New sequential touch method for determining bacterial contact transfer rate from finger to surface

Zhao, P.; Li, Y.

10.1101/328971 — microbiology — Posted on 2018-05-23

759 A novel oceanic uncultured temperate cyanophage lineage

Flores-Uribe, J.; Philosof, A.; Sharon, I.; Beja, O.

10.1101/325100 — microbiology — Posted on 2018-05-23

760 Cell adhesion promoted by a unique Shigella IpaA vinculin- and talin-binding site

Valencia-Gallardo, C. M.; Bou-Nader, C.; Aguilar, D.; Carayol, N.; Quenech'Du, N.; Pecqueur, L.; Park, H.; Fontecave, M.; Izard, T.; Tran Van Nhieu, G.

10.1101/329136 — microbiology — Posted on 2018-05-23

761 LFAQ: towards unbiased label-free absolute protein quantification by predicting peptide quantitative factors

Chang, C.; Gao, Z.; Ying, W.; Zhao, Y.; Fu, Y.; Wu, S.; Li, M.; Wang, G.; Qian, X.; Zhu, Y.; He, F.

10.1101/328864 — bioinformatics — Posted on 2018-05-23

762 MXP: Modular eXpandable framework for building bioinformatics Pipelines

Kovtun, M.; Akushevich, I.; Arbeev, K.; Yashin, A.

10.1101/329110 — bioinformatics — Posted on 2018-05-23

763 TreeSwift: a massively scalable Python package for trees

Moshiri, N.

10.1101/325522 — bioinformatics — Posted on 2018-05-23

764 Maximum-entropy and representative samples of neuronal activity: a dilemma

Porta Mana, P.; Rostami, V.; Torre, E.; Roudi, Y.

10.1101/329193 — neuroscience — Posted on 2018-05-23

765 Sharp wave-associated activity patterns of olfactory cortical neurons in the mouse piriform cortex

Katori, K.; Manabe, H.; Nakashima, A.; Dunfu, E.; Sasaki, T.; Ikegaya, Y.; Takeuchi, H.

10.1101/329185 — neuroscience — Posted on 2018-05-23

766 An amplitude code increases the efficiency of information transmission across a visual synapse

James, B.; Darnet, L.; Moya-Diaz, J.; Seibel, S.-H.; Lagnado, L.

10.1101/328682 — neuroscience — Posted on 2018-05-23

767 Metabolic marker gene mining provides insight in global mcrA diversity and, coupled with targeted genome reconstruction, sheds light on metabolic versatility of the Methanomassiliicoccales

Speth, D. R.; Orphan, V. J.

10.1101/328906 — microbiology — Posted on 2018-05-23

768 The contribution of melanization to Drosophila survival changes with Enterococcus faecalis V583 genomic content

Teixeira, N.; Jacinto, A.; Silva Lopes, M. d. F.

10.1101/329144 — microbiology — Posted on 2018-05-23

769 Interleukin-17A Secreted from the Lung-infiltrating T Helper 17 Cells Renders Protective Immunity to Pulmonary Cryptococcus neoformans Infection

Movahed, E.; Tan, G. M. Y.; Cheong, H. C.; Lee, C. Y. Q.; Cheok, Y. Y.; Tay, S. T.; Chong, P. P.; Wong, W. F.; Looi, C. Y.

10.1101/328005 — immunology — Posted on 2018-05-23

770 Population genetic tests for the direction and relative timing of introgression

Hibbins, M. S.; Hahn, M. W.

10.1101/328575 — evolutionary biology — Posted on 2018-05-23

771 Bacteria associated with jellyfish during bloom and post-bloom periods

Kos Kramar, M.; Tinta, T.; Lu?i?, D.; Malej, A.; Turk, V.

10.1101/329524 — ecology — Posted on 2018-05-23

772 Small females prefer small males: size assortative mating in Aedes aegypti mosquitoes

Callahan, A. G.; Ross, P. A.; Hoffmann, A. A.

10.1101/328930 — animal behavior and cognition — Posted on 2018-05-23

773 The Y-ome defines the thirty-four percent of Escherichia coli genes that lack experimental evidence of function

Ghatak, S.; King, Z. A.; Sastry, A.; Palsson, B. O.

10.1101/328591 — systems biology — Posted on 2018-05-23

774 Science podcasts: analysis of global production and output from 2004 to 2018

MacKenzie, L. E.

10.1101/298356 — scientific communication and education — Posted on 2018-05-23

775 Lack of negative density-dependence regulation in a dominant oak tree from a neotropical highland forest

Calderon-Sanou, I.; Rios, L. D.; Cascante-Marin, A.; Barrantes, G.; Fuchs, E. J.

10.1101/329177 — plant biology — Posted on 2018-05-23

776 Compulsivity and impulsivity are linked to distinct aberrant developmental trajectories of fronto-striatal myelination

Ziegler, G.; Hauser, T.; Moutoussis, M.; Bullmore, E. T.; Goodyer, I. M.; Fonagy, P.; Jones, P. B.; NSPN Consortium, ; Lindenberger, U.; Dolan, R. J.

10.1101/328146 — neuroscience — Posted on 2018-05-23

777 Heterocellular coupling between amacrine cell and ganglion cells

Marc, R. E.; Sigulinsky, C.; Pfeiffer, R. L.; Emrich, D.; Anderson, J.; Jones, B. W.

10.1101/328815 — neuroscience — Posted on 2018-05-23

778 The dynamic basis of cognition: an integrative core under the control of the ascending neuromodulatory system

Shine, J. M.; Breakspear, M.; Bell, P.; Ehgoetz Martens, K.; Shine, R.; Koyejo, O.; Sporns, O.; Poldrack, R.

10.1101/266635 — neuroscience — Posted on 2018-05-23

779 Addiction associated N40D mu-opioid receptor variant modulates synaptic function in human neurons

Halikere, A.; Popova, D.; Hamod, A.; Swerdel, M. S.; Moore, J. C.; Tischfield, J. A.; Hart, R. P.; Pang, Z.

10.1101/328898 — neuroscience — Posted on 2018-05-23

780 Exploratory noise governs both flexibility and spontaneous errors and is regulated by cocaine

Ebitz, R. B.; Sleezer, B. J.; Jedema, H. P.; Bradberry, C. W.; Hayden, B. Y.

10.1101/328872 — neuroscience — Posted on 2018-05-23

781 The human cytomegalovirus ER resident glycoprotein UL148 activates the unfolded protein response

Siddiquey, M. N. A.; Zhang, H.; Nguyen, C. C.; Domma, A. J.; Kamil, J. P.

10.1101/328955 — microbiology — Posted on 2018-05-23

782 How Much Information is Provided by Human Epigenomic Data? An Evolutionary View

Gulko, B.; Siepel, A.

10.1101/317719 — genomics — Posted on 2018-05-23

783 Indirect effects of territorial neighbors on the timing of spring breeding may counteract changes in selection in North American red squirrels

Fisher, D. N.; Wilson, A. J.; Boutin, S.; Dantzer, B.; Lane, J. E.; Coltman, D. W.; Gorrell, J. C.; McAdam, A. G.

10.1101/329276 — evolutionary biology — Posted on 2018-05-23

784 Major QTL controls adaptation to serpentine soils in Mimulus guttatus

Selby, J. P.; Willis, J. H.

10.1101/328617 — evolutionary biology — Posted on 2018-05-23

785 Enforced Symmetry: The Necessity of Symmetric Waxing and Waning

Hohmann, N.

10.1101/328070 — ecology — Posted on 2018-05-23

786 Bidirectional intraflagellar transport is restricted to only two microtubule doublets in the trypanosome flagellum

Bertiaux, E.; Mallet, A.; Fort, C.; Blisnick, T.; Bonnefoy, S.; Jung, J.; Lemos, M.; Marco, S.; Vaughan, S.; Trepout, S.; Tinevez, J.-Y.; Bastin, P.

10.1101/329300 — cell biology — Posted on 2018-05-23

787 A particle-filter framework for robust cryoEM 3D reconstruction

Hu, M.; Yu, H.; Gu, K.; Wang, K.; Ren, S.; Li, B.; Gan, L.; Xu, S.; Yang, G.; Shen, Y.; Li, X.

10.1101/329169 — biophysics — Posted on 2018-05-23

788 Effect of eco-remediation and microbial community using multilayer solar planted floating island (MS-PFI) in the drainage channel

Sun, Z.; Xie, D.; Jiang, X.; Fu, G.; Xiao, D.; Zheng, L.

10.1101/327965 — bioengineering — Posted on 2018-05-23

789 The community and ecosystem consequences of intraspecific diversity: a meta-analysis

Raffard, A.; Santoul, F.; Cucherousset, J.; Blanchet, S.

10.1101/328112 — ecology — Posted on 2018-05-23

790 Improved prediction of chronological age from DNA methylation limits it as a biomarker of ageing

Zhang, Q.; Vallerga, C.; Walker, R.; Lin, T.; Henders, A.; Montgomery, G.; He, J.; Fan, D.; Fowdar, J.; Kennedy, M.; Pitcher, T.; Pearson, J.; Halliday, G.; Kwok, J.; Hickie, I.; Lewis, S.; Anderson, T.; Silburn, P.; Mellick, G.; Harris, S. E.; Redmond, P.; Murray, A.; Porteous, D.; Haley, C.; Evans, K.; McIntosh, A.; Yang, J.; Gratten, J.; Marioni, R.; Wray, N.; Deary, I.; Mcrae, A.; Visscher, P.

10.1101/327890 — bioinformatics — Posted on 2018-05-23

791 Characterizing the genetic history of admixture across inner Eurasia

Jeong, C.; Balanovsky, O.; Lukianova, E.; Kahbatkyzy, N.; Flegontov, P.; Zaporozhchenko, V.; Immel, A.; Wang, C.-C.; Ixan, O.; Khussainova, E.; Bekmanov, B.; Zaibert, V.; Lavryashina, M.; Pocheshkhova, E.; Yusupov, Y.; Agdzhoyan, A.; Sergey, K.; Bukin, A.; Nymadawa, P.; Churnosov, M.; Skhalyakho, R.; Daragan, D.; Bogunov, Y.; Bogunova, A.; Shtrunov, A.; Dubova, N.; Zhabagin, M.; Yepiskoposyan, L.; Churakov, V.; Pislegin, N.; Damba, L.; Saroyants, L.; Dibirova, K.; Artamentova, L.; Utevska, O.; Idrisov, E.; Kamenshchikova, E.; Evseeva, I.; Metspalu, M.; Robbeets, M.; Djansugurova, L.; Balanovsk

10.1101/327122 — genomics — Posted on 2018-05-23

792 Subset-Based Analysis using Gene-Environment Interactions for Discovery of Genetic Associations across Multiple Studies or Phenotypes

Yu, Y.; Xia, L.; Lee, S.; Zhou, X.; Stringham, H. M.; Boehnke, M.; Mukherjee, B.

10.1101/326777 — genetics — Posted on 2018-05-23

793 plyranges: A grammar of genomic data transformation

Lee, S.; Cook, D.; Lawrence, M.

10.1101/327841 — bioinformatics — Posted on 2018-05-23

794 Influence of plant growth regulators and nitrogen sources on the production and development of Brachiaria decumbens cv. Basilisk

Rocha, L. C.; Teixeira, F. A.; Pedreira, M. d. S.; Fries, D. D.; Costa, E. G. L.; Dias, D. L. S.; Figueiredo, A. J. d.; Seixas, A. A.; Pacheco, C. C.; Soares, A. C. M.

10.1101/329565 — plant biology — Posted on 2018-05-23

795 Synthesis, Biological Activity and Molecular Docking of New Tricyclic Series as α-glucosidase Inhibitors

Abuelizz, H. A.; Iwana, N. A.; Ahmad, R.; El-Hassane, A.; Marzouk, M.; Al-Salahi, R.

10.1101/329557 — biochemistry — Posted on 2018-05-23

796 The RNA demethylase FTO targets m6Am in snRNA to establish distinct methyl isoforms that influence splicing

Mauer, J.; Sindelar, M.; Guez, T.; Vasseur, J.-J.; Rentmeister, A.; Gross, S. S.; Pellizzoni, L.; Debart, F.; Goodarzi, H.; Jaffrey, S. R.

10.1101/327924 — molecular biology — Posted on 2018-05-23

797 Combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression data in cancer with CancerInSilico

Sherman, T. D.; Kagohara, L. T.; Cao, R.; Cheng, R.; Satriano, M.; Considine, M.; Krigsfeld, G.; Ranaweera, R.; Tang, Y.; Jablonski, S.; Stein-O'Brien, G.; Gaykalova, D.; Weiner, L. M.; Chung, C.; Fertig, E.

10.1101/328807 — systems biology — Posted on 2018-05-23

798 Hierarchical organization of the human cell from a cancer coessentiality network

Kim, E.; Dede, M.; Lenoir, W. F.; Wang, G.; Srinivasan, S.; Colic, M.; Hart, T.

10.1101/328880 — systems biology — Posted on 2018-05-23

799 MicroRNA-196a is regulated by ER and is a prognostic biomarker in ER+ Breast Cancer

Milevskiy, M.; Gujral, U.; Del Lama Marques, C.; Stone, A.; Northwood, K.; Burke, L.; Gee, J.; Nephew, K.; Clark, S.; Brown, M.

10.1101/329227 — cancer biology — Posted on 2018-05-23

800 Emergence of a Dengue virus serotype 2 causing the largest ever dengue epidemic in Sri Lanka

Wijewickrama, A.; Fernando, S.; Jayerathne, G. S. B.; Perera, P. A.; Abeynaike, S. A.; Gomes, L.; Jeewandara, C.; Tippalagama, R.; Dilani, D.; Rajendran, A.; Abeyesekere, R.; Goonawardhana, S.; De Silva, A. D.; Malavige, G. N.

10.1101/329318 — epidemiology — Posted on 2018-05-23

801 Optimization of the South African indigenous fungal growth for the degradation of diclofenac sodium from water

Kasonga, T. K.

10.1101/329250 — microbiology — Posted on 2018-05-23

802 Linked mutations at adjacent nucleotides have shaped human population differentiation and protein evolution

Prendergast, J. G. D.; Pugh, C.; Harris, S.; Hume, D.; Deary, I.; Beveridge, A.

10.1101/329292 — genomics — Posted on 2018-05-23

803 The bithorax complex iab-7 Polycomb Response Element has a novel role in the functioning of the Fab-7 chromatin boundary

Kyrchanova, O.; Kurbidaeva, A.; Sabirov, M.; Postika, N.; Wolle, D.; Aoki, T.; Maksimenko, O.; Mogila, V.; Schedl, P.; Georgiev, P.

10.1101/329284 — genetics — Posted on 2018-05-23

804 Impact of Chronic Total Occlusion Lesion Length onSix-month Angiographic and 2-year Clinical Outcomes

Ahn, J.; Rha, S.-W.; Choi, B.; Choi, S. Y.; Byun, J. K.; Ahmed, M.; Kareem, A.; Park, Y.; Jang, W. Y.; Kim, W.; Choi, J. Y.; Park, E.; Na, J. O.; Choi, C. U. C.; Kim, E. K. M.; Park, C. G.; Seo, H. S.; Oh, D. J.; Byeon, J.; Park, S.; Yu, H.

10.1101/329268 — physiology — Posted on 2018-05-23

805 Taxonomy, phylogeny and biogeography of African spurfowls (Galliformes, Phasianidae, Coturnicinae, Pternistis spp.)

Crowe, T. M.; Mandiwana-Neudani, T. G.; Little, R. M.; Bowie, R. C. K.; N/A,

10.1101/329243 — evolutionary biology — Posted on 2018-05-23

806 Intermediate filaments control collective migration by restricting traction forces and sustaining cell-cell contacts

De Pascalis, C.; Perez-Gonzalez, C.; Seetharaman, S.; Boeda, B.; Vianay, B.; Burute, M.; Leduc, C.; Borghi, N.; Trepat, X.; Etienne-Manneville, S.

10.1101/328609 — cell biology — Posted on 2018-05-23

807 A Generative Bayesian Approach for Incorporating Biosurveillance Sources into Epidemiological Models

Manheim, D.

10.1101/328518 — epidemiology — Posted on 2018-05-22

808 Single-cell mRNA profiling reveals heterogeneous combinatorial expression of Hoxd genes during limb development

Fabre, P. J.; Leleu, M.; Mascrez, B.; Lo Giudice, Q.; Cobb, J.; Duboule, D.

10.1101/327619 — developmental biology — Posted on 2018-05-22

809 Science podcasts: analysis of global production and output from 2004 to 2018

MacKenzie, L. E.

10.1101/298356 — scientific communication and education — Posted on 2018-05-22

810 A voltage-dependent depolarization induced by low external glucose in neurons of the nucleus of the tractus solitarius of rats: interaction with KATP channels regulated by external glucose.

Murat, C. d. B.; Leao, R.

10.1101/328658 — physiology — Posted on 2018-05-22

811 An amplitude code increases the efficiency of information transmission across a visual synapse

Lagnado, L.; James, B.; Darnet, L.; Moya-Diaz, J.; Seibel, S.-H.

10.1101/328682 — neuroscience — Posted on 2018-05-22

812 Molecular determinants of WNT9b responsiveness in nephron progenitor cells

Dickinson, K. K.; Hammond, L. C.; Karner, C. M.; Hastie, N. D.; Carroll, T. J.; Goodyer, P. R.

10.1101/328765 — developmental biology — Posted on 2018-05-22

813 A Deep Learning Approach for Learning Intrinsic Protein-RNA Binding Preferences

Ben-Bassat, I.; Chor, B.; Orenstein, Y.

10.1101/328633 — bioinformatics — Posted on 2018-05-22

814 Phenotypic plasticity facilitates alterations in life-history strategies under combinations of environmental stresses

Shaar-Moshe, L.; Hayouka, R.; Roessner, U.; Peleg, Z.

10.1101/328062 — plant biology — Posted on 2018-05-22

815 Simulating human sleep spindle MEG and EEG from ion channel and circuit level dynamics

Rosen, B. Q.; Krishnan, G.; Sanda, P.; Komarov, M.; Sejnowski, T.; Rulkov, N.; Bazhenov, M.; Halgren, E.

10.1101/202606 — neuroscience — Posted on 2018-05-22

816 Rapid alignment-free phylogenetic identification of metagenomic sequences

Linard, B.; Pardi, F.; Swenson, K.

10.1101/328740 — bioinformatics — Posted on 2018-05-22

817 NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data

Fang, L.; Hu, J.; Wang, D.; Wang, K.

10.1101/092544 — genomics — Posted on 2018-05-22

818 Biophysical Principles of Lineage Factor PU.1 Binding Revealed by NextPBMs

Mohaghegh, N.; Bray, D.; Keenan, J.; Penvose, A.; Andrilenas, K. K.; Ramlall, V.; Siggers, T.

10.1101/328625 — molecular biology — Posted on 2018-05-22

819 Patterns and perceptions of cannabis use with physical activity

Lisano, J.; Stewart, L. K.; Phillips, K. T.; Smith, J. D.; Barnes, M. J.

10.1101/328732 — neuroscience — Posted on 2018-05-22

820 Abnormal microtubule dynamics disrupt nucleocytoplasmic transport in tau-mediated frontotemporal dementia

Paonessa, F.; Evans, L.; Solanki, R.; Larrieu, D.; Wray, S.; Hardy, J.; Jackson, S. P.; Livesey, F. J.

10.1101/328187 — neuroscience — Posted on 2018-05-22

821 MicroRNA-184 Is Induced By Store-Operated Calcium Entry And Regulates Early Keratinocyte Differentiation

Richardson, A.; Powell, A.; Sexton, D. W.; Parsons, J. L.; Reynolds, N. J.; Ross, K.

10.1101/319541 — molecular biology — Posted on 2018-05-22

822 Human IgE producing B cells have a unique transcriptional program and generate high affinity, allergen-specific antibodies

Croote, D.; Darmanis, S.; Nadeau, K. C.; Quake, S. R.

10.1101/327866 — immunology — Posted on 2018-05-22

823 Genetic diversity in two Plasmodium vivax protein ligands for reticulocyte invasion

Roesch, C.; Popovici, J.; Bin, S.; Run, V.; Kim, S.; Ramboarina, S.; Rakotomalala, E.; Rakotoarison, R. L.; Rasoloharimanana, T.; Andriamanantena, Z.; Kumar, A.; Guillotte-Blisnick, M.; Huon, C.; Serre, D.; Chitnis, C. E.; Vigan-Womas, I.; Menard, D.

10.1101/328757 — genetics — Posted on 2018-05-22

824 Merle phenotypes in dogs - SILV SINE insertions from Mc to Mh

Pekova, S.; Langevin, M.; Synkova, H.; Jancuskova, T.

10.1101/328690 — genetics — Posted on 2018-05-22

825 Within-species phylogenetic relatedness of a common mycorrhizal fungus affects evenness in plant communities through effects on dominant species

Sanders, I. R.; Savary, R.; Villard, L.

10.1101/328708 — ecology — Posted on 2018-05-22

826 Pink Shrimp Farfantepenaeus duorarum Spatiotemporal Abundance Trends Along an Urban, Subtropical Shoreline Slated for Restoration

Zink, I. C.; Browder, J. A.; Lirman, D. C.; Serafy, J. E.

10.1101/328724 — ecology — Posted on 2018-05-22

827 Isotropic myosin-generated tissue tension is required for the dynamic orientation of the mitotic spindle

Lam, M. S.; Lisica, A.; Ramkumar, N.; Mao, Y.; Charras, G.; Baum, B.

10.1101/328161 — cell biology — Posted on 2018-05-22

828 Dynamic interactions of type I cohesin modules fine-tune the structure of the cellulosome of Clostridium thermocellum

Barth, A.; Hendrix, J.; Fried, D.; Barak, Y.; Bayer, E.; Lamb, D. C.

10.1101/328088 — biophysics — Posted on 2018-05-22

829 Remote manipulation of magnetic nanoparticles using magnetic field gradient to promote cancer cell death

Subramanian, M.; Miaskowski, A.; Jenkins, S. I.; Lim, J.; Dobson, J.

10.1101/317115 — bioengineering — Posted on 2018-05-22

830 The Impact of Reward on Attention in Schizophrenia

Bansal, S.; Robinson, B. M.; Geng, J.; Leonard, C. J.; Hahn, B.; Luck, S. J.; Gold, J. M.

10.1101/327692 — neuroscience — Posted on 2018-05-22

831 Supplemental vibrotactile feedback of real-time limb position enhances precision of goal-directed reaching

Risi, N.; Shah, V.; Mrotek, L. A.; Casadio, M.; Scheidt, R. A.

10.1101/327049 — neuroscience — Posted on 2018-05-22

832 Genetic compensation is triggered by mutant mRNA degradation

El-Brolosy, M.; Rossi, A.; Kontarakis, Z.; Kuenne, C.; Guenther, S.; Fukuda, N.; Takacs, C.; Lai, S.-L.; Fukuda, R.; Gerri, C.; Kikhi, K.; Giraldez, A.; Stainier, D. Y. R.

10.1101/328153 — genetics — Posted on 2018-05-22

833 Capturing single-cell heterogeneity via data fusion improves image-based profiling

Rohban, M. H.; Singh, S.; Carpenter, A. E.

10.1101/328542 — bioinformatics — Posted on 2018-05-22

834 Biophysically Realistic Neuron Models for Simulation of Cortical Stimulation

Aberra, A. S.; Peterchev, A. V.; Grill, W. M.

10.1101/328534 — bioengineering — Posted on 2018-05-22

835 Minimizing marine ingredients in diets of farmed Atlantic salmon (Salmo salar): Effects on growth performance and muscle lipid and fatty acid composition

Beheshti Foroutani, M.; Parrish, C.; Wells, J.; Taylor, R.; Rise, M.; Shahidi, F.

10.1101/328716 — biochemistry — Posted on 2018-05-22

836 Acoustic Calibration in an Echoic Environment

Kazakov, A.; Nelken, I.

10.1101/321414 — animal behavior and cognition — Posted on 2018-05-22

837 A de novo peroxidase is also a promiscuous yet stereoselective carbene transferase

Stenner, R.; Steventon, J.; Seddon, A.; Anderson, J. L. R.

10.1101/328484 — synthetic biology — Posted on 2018-05-22

838 Early in planta detection of Xanthomonas axonopodis pv. punicae in pomegranate using enhanced loop-mediated isothermal amplification assay

Prasanna Kumar, M. K.; Parivallal, P. B.; Manjunath, C.; Mahesh, H.; Narayan, K. S.; babu, g. v.; priyanka, K.; Puneeth, M. E.; Rangaswamy, K. T.

10.1101/328674 — plant biology — Posted on 2018-05-22

839 Strange Stable Replicators Generated From Mumps Virus cDNA Clones

Bamford, C. G. G.; Wignall Fleming, E.; Randall, R.; Duprex, P.; Rima, B.

10.1101/328179 — microbiology — Posted on 2018-05-22

840 Privatisation rescues function following loss of cooperation

Andersen, S. B.; Ghoul, M.; Marvig, R. L.; Lee, Z.-B.; Molin, S.; Johansen, H. K.; Griffin, A. S.

10.1101/326165 — evolutionary biology — Posted on 2018-05-22

841 An method for systematically surveying data visualizations in infectiousdisease genomic epidemiology

Crisan, A.; Gardy, J. L.; Munzner, T.

10.1101/325290 — bioinformatics — Posted on 2018-05-22

842 Combined single cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity

Linker, S. M.; Urban, L.; Clark, S.; Chhatriwala, M.; Amatya, S.; McCarthy, D.; Ebersberger, I.; Vallier, L.; Reik, W.; Stegle, O.; Bonder, M. J.

10.1101/328138 — bioinformatics — Posted on 2018-05-22

843 Exploring the impact of inoculum dose on host immunity and morbidity to inform model-based vaccine design

Handel, A.; Li, Y.; McKay, B.; Pawelek, K.; Zarnitsyna, V.; Antia, R.

10.1101/328559 — systems biology — Posted on 2018-05-22

844 Chlorosis as a developmental program in cyanobacteria: the proteomic fundament for survival and awakening

Spaet, P.; Klotz, A.; Rexroth, S.; Macek, B.; Forchhammer, K.

10.1101/325761 — microbiology — Posted on 2018-05-22

845 Overlooked roles of DNA damage and maternal age in generating human germline mutations

Gao, Z.; Moorjani, P.; Amster, G.; Przeworski, M.

10.1101/327098 — genetics — Posted on 2018-05-22

846 Boundary-Driven Emergent Spatiotemporal Order in Growing Microbial Colonies

Karamched, B.; Ott, W.; Timofeyev, I.; Alnahhas, R. N.; Bennett, M. R.; Josic, K.

10.1101/328583 — biophysics — Posted on 2018-05-22

847 Enzyme promiscuity shapes evolutionary innovation and optimization

Guzman, G. I.; Sandberg, T. E.; LaCroix, R. A.; Nyerges, A.; Papp, H.; de Raad, M.; King, Z. A.; Northen, T. R.; Notebaart, R. A.; Pal, C.; Palsson, B. O.; Papp, B.; Feist, A. M.

10.1101/310946 — systems biology — Posted on 2018-05-22

848 Levodopa and dopamine dynamics in Parkinson’s disease metabolomics

Branco, R. C.; Ellsworth, W.; Niedzwiecki, M. M.; Butkovich, L. M.; Walker, D. I.; Huddleston, D. E.; Jones, D. P.; Miller, G. W.

10.1101/306266 — neuroscience — Posted on 2018-05-22

849 Modeling the schizophrenias: subunit-specific NMDAR antagonism dissociates frontal δ and hippocampal θ modulation of ~140 Hz oscillations

Pittman-Polletta, B. R.; Hu, K.; Kocsis, B.

10.1101/191882 — neuroscience — Posted on 2018-05-22

850 LRH-1 Mitigates Intestinal Inflammatory Disease by Maintaining Epithelial Homeostasis and Cell Survival

Bayrer, J. R.; Wang, H.; Nattiv, R.; Suzawa, M.; Escusa, H. S.; Fletterick, R. J.; Klein, O. D.; Moore, D. D.; Ingraham, H. A.

10.1101/314302 — cell biology — Posted on 2018-05-22

851 Sensitivity to Pain Expectations: A Bayesian Model of Individual Differences

Hoskin, R.; Berzuini, C. C.; Acosta-Kane, D.; El-Deredy, W.; Guo, H.; Talmi, D.

10.1101/176172 — neuroscience — Posted on 2018-05-22

852 Control of Hox transcription factor concentration and cell-to-cell variability by an auto-regulatory switch

Papadopoulos, D. K.; Skouloudaki, K.; Engstrom, Y.; Terenius, L.; Rigler, R.; Zechner, C.; Vukojevic, V.; Tomancak, P.

10.1101/115220 — genetics — Posted on 2018-05-22

853 Hundreds of putative non-coding cis-regulatory drivers in chronic lymphocytic leukaemia and skin cancer

Ongen, H.; Delaneau, O.; Stevens, M. W.; Howald, C.; Dermitzakis, E. T.

10.1101/174219 — cancer biology — Posted on 2018-05-22

854 Rapid high-resolution measurement of DNA replication timing by droplet digital PCR

Batrakou, D. G.; Heron, E. D.; Nieduszynski, C. A.

10.1101/208546 — molecular biology — Posted on 2018-05-22

855 Simultaneous multiplexed amplicon sequencing and transcriptome profiling in single cells

Saikia, M.; Burnham, P.; Keshavjee, S. H.; Wang, M. F. Z.; Moral-Lopez, P.; Hinchman, M. M.; Danko, C. G.; Parker, J. S. L.; De Vlaminck, I.

10.1101/328328 — genomics — Posted on 2018-05-22

856 Planar cell polarity: the prickle gene actsindependently on both the Ds/Ft and the Stan systems

Casal, J.; Ibanez-Jimenez, B.; Lawrence, P. A.

10.1101/212167 — developmental biology — Posted on 2018-05-22

857 A Bayesian Mixture Modelling Approach For Spatial Proteomics

Crook, O. M.; Mulvey, C. M.; Kirk, P. D. W.; Lilley, K. S.; Gatto, L.

10.1101/282269 — systems biology — Posted on 2018-05-22

858 Exome-wide assessment of the functional impact and pathogenicity of multi-nucleotide mutations

Kaplanis, J.; Akawi, N.; Gallone, G.; McRae, J. F.; Prigmore, E.; Wright, C. F.; Fitzpatrick, D. R.; Firth, H. V.; Barrett, J. C.; Hurles, M. E.; on behalf of the Deciphering Developmental Disorders Study,

10.1101/258723 — genomics — Posted on 2018-05-22

859 Elevated alpha-1 antitrypsin is a major component of GlycA-associated risk for future morbidity and mortality

Ritchie, S. C.; Kettunen, J.; Brozynska, M.; Nath, A. P.; Havulinna, A. S.; Männistö, S.; Perola, M.; Salomaa, V.; Ala-Korpela, M.; Abraham, G.; Würtz, P.; Inouye, M.

10.1101/309138 — systems biology — Posted on 2018-05-22

860 Hunter-gatherers maintain assortativity in cooperation despite high-levels of residential change and mixing

Smith, K.; Larroucau, T.; Mabulla, I. A.; Apicella, C. L.

10.1101/313064 — animal behavior and cognition — Posted on 2018-05-22

861 Tributyltin induces a transcriptional response without a brite adipocyte signature in adipocyte models

Kim, S. M.; Li, A.; Monti, S.; Schlezinger, J. J.

10.1101/328203 — pharmacology and toxicology — Posted on 2018-05-22

862 Robust and fast Monte Carlo Markov Chain sampling of diffusion MRI microstructure models

Harms, R. L.; Roebroeck, A.

10.1101/328427 — neuroscience — Posted on 2018-05-22

863 PySight: plug and play photon counting for fast intravital microscopy

Har-Gil, H.; Golgher, L.; Israel, S.; Kain, D.; Cheshnovsky, O.; Parnas, M.; Blinder, P.

10.1101/316125 — neuroscience — Posted on 2018-05-22

864 Single-cell mRNA profiling reveals heterogeneous combinatorial expression of Hoxd genes during limb development

Fabre, P. J.; Leleu, M.; Mascrez, B.; Lo Giudice, Q.; Cobb, J.; Duboule, D.

10.1101/327619 — developmental biology — Posted on 2018-05-22

865 Highly differentiated CD4 T cells Unequivocally Identify Primary Resistance and Risk of Hyperprogression to PD-L1/PD-1 Immune Checkpoint Blockade in Lung Cancer

Zuazo-Ibarra, M.; Arasanz, H.; Fernandez-Hinojal, G.; Gato-Canas, M.; Hernandez-Marin, B.; Martinez-Aguillo, M.; Lecumberri, M. J.; Fernandez, A.; Teijeira, L.; Vera, R.; Kochan, G.; Escors, D.

10.1101/320176 — cancer biology — Posted on 2018-05-22

866 Practical bioinstrumentation developments for AC magnetic field-mediated magnetic nanoparticle heating applications.

Subramanian, M.; Miaskowski, A.; Mahapatro, A. K.; Hovorka, O.; Dobson, J.

10.1101/328211 — bioengineering — Posted on 2018-05-22

867 Visualizing APP trafficking and processing reveals its association with neuronal membrane cholesterol

DelBove, C.; Strothman, C.; Huang, H.; Sanders, C.; Zhang, Q.

10.1101/328419 — neuroscience — Posted on 2018-05-22

868 The Roles of Different Spatial Frequency Channels in Real-World Visual Motion Perception

Shi, C.; Pundlik, S.; Luo, G.

10.1101/328443 — neuroscience — Posted on 2018-05-22

869 An intermittent hypercaloric diet alters gut microbiota, prefrontal cortical gene expression and social behaviours in rats

Reichelt, A. C.; Loughman, A.; Bernard, A.; Raipuria, M.; Abbott, K. N.; Dachtler, J.; Van, T. T. H.; Moore, R. J.

10.1101/328294 — neuroscience — Posted on 2018-05-22

870 Generation of light-producing somatic-transgenic mice using adeno-associated virus vectors

Karda, R.; Rahim, A. A.; Wong, A. M. S.; Suff, N.; Antinao Diaz, J.; Perocheau, D. P.; Palomar Martin, N.; Hughes, M.; Delhove, J. M. K. M.; Counsell, J. R.; Cooper, J. D.; Henckaerts, E.; Mckay, T. R.; Buckley, S. M. K.; Waddington, S. N.

10.1101/328310 — genomics — Posted on 2018-05-22

871 Theory bridging cell polarities with development of robust complex morphologies

Boye, S.; Ronhild, S.; Trusina, A.; Sneppen, K.

10.1101/328385 — biophysics — Posted on 2018-05-22

872 Clustering trees: a visualisation for evaluating clusterings at multiple resolutions

Zappia, L.; Oshlack, A.

10.1101/274035 — bioinformatics — Posted on 2018-05-22

873 Tendon slack length is the primary determinant of plantarflexor muscle-tendon function in computational simulations of gait

Baxter, J. R.; Hast, M. W.

10.1101/328435 — bioengineering — Posted on 2018-05-22

874 Prophylactic vaccination protects against the development of oxycodone self-administration

Nguyen, J. D.; Hwang, C. S.; Grant, Y.; Janda, K. D.; Taffe, M. A.

10.1101/210369 — neuroscience — Posted on 2018-05-22

875 Haploid selection, sex ratio bias, and transitions between sex-determining systems

Scott, M. F.; Osmond, M. M.; Otto, S. P.

10.1101/269431 — evolutionary biology — Posted on 2018-05-22

876 Deactivation and mislocalization of a kinase protein induced by a single amino acid mutation on the proton transport catalytic aspartic acid

Zhang, Y.

10.1101/282822 — biochemistry — Posted on 2018-05-22

877 When parasites are selected to kill the young

Iritani, R.; Visher, E.; Boots, M.

10.1101/324632 — ecology — Posted on 2018-05-22

878 Marine sponges as Chloroflexi hot-spots: Genomic insights and high resolution visualization of an abundant and diverse symbiotic clade

Bayer, K.; Jahn, M. T.; Slaby, B. M.; Moitinho-Silva, L.; Hentschel, U.

10.1101/328013 — microbiology — Posted on 2018-05-22

879 TLR3-TRIF pathway activation by Neospora caninum RNA enhances infection control

Miranda, V. d. S.; Franca, F. B. F.; da Costa, M. S.; Silva, V. R. S.; Mota, C. M.; Barros, P. d. S. C.; Parreira, K. S.; Santiago, F. M.; Mineo, J. R.; Mineo, T. W.

10.1101/327999 — immunology — Posted on 2018-05-22

880 Discovery of gene regulatory elements through a new bioinformatics analysis of haploid genetic screens

Patel, B. B.; Lebensohn, A. M.; Carette, J. E.; Salzman, J.; Rohatgi, R.

10.1101/327775 — bioinformatics — Posted on 2018-05-22

881 A Neural Microcircuit Model for a Scalable Scale-invariant Representation of Time

Liu, Y.; Tiganj, Z.; Hasselmo, M.; Howard, M.

10.1101/327387 — neuroscience — Posted on 2018-05-22

882 Evaluation of whole genome sequencing for the identification and typing of Vibrio cholerae

Greig, D. R.; Schafer, U.; Octavia, S.; Hunter, E.; Chattaway, M. A.; Dallman, T. J.; Jenkins, C.

10.1101/327973 — microbiology — Posted on 2018-05-22

883 The efficacy of a 14-day modified quadruple therapy containing amoxicillin, tetracycline and high dose metronidazole and proton-pump inhibitors as an empirical third line helicobacter pylori eradication treatment in Taiwan

Huang, H. T.; Liang, C.-M.; Lee, C.-H.; Tai, W.-C.; Wu, C. K.; Yang, S.-C.; Huang, C.-F.; Chiu, C.-H.; Tsai, K.-L.; Chang, M.-w.; Wang, H.-M.; Wu, K.-L.; Hsu, P.-I.; Wu, D.-C.; Chuah, S.-K.

10.1101/327981 — microbiology — Posted on 2018-05-22

884 A chromosome-scale assembly of the sorghum genome using nanopore sequencing and optical mapping

Deschamps, S.; Zhang, Y.; Llaca, V.; Ye, L.; May, G.; Lin, H.

10.1101/327817 — genomics — Posted on 2018-05-22

885 Gene editing and mutagenesis reveal inter-cultivar differences and additivity in the contribution of TaGW2 homoeologues to grain size and weight in wheat

wang, w.; Simmonds, J.; Pan, Q.; Davidson, D.; He, F.; Battal, A.; Akhunova, A.; Trick, H. N.; Uauy, C.; Akhunov, E.

10.1101/327874 — genetics — Posted on 2018-05-22

886 Transcriptomic analysis reveals similarities in genetic activation of detoxification mechanisms resulting from imidacloprid and chlorothalonil exposure

Clements, J.; Sanchez-Sedillo, B.; Bradfield, C.; Groves, R.

10.1101/327809 — genetics — Posted on 2018-05-22

887 An analysis and comparison of the statistical sensitivity of semantic similarity metrics

Manda, P.; Vision, T.

10.1101/327833 — bioinformatics — Posted on 2018-05-22

888 Computational Screening of Potential Inhibitors of Desulfobacter postgatei for Pyrite Scale Prevention in Oil and Gas Wells

Hussein, I. A.; Onawole, A. T.; Saad, M. A.; Nimir, H. I.; Ahmer, M. E. M.

10.1101/327957 — biochemistry — Posted on 2018-05-22

889 Single-fluorescent protein reporters allow parallel quantification of NK cell-mediated granzyme and caspase activities in single target cells

Liesche, C.; Sauer, P.; Claus, M.; Eils, R.; Beaudouin, J.; Watzl, C.

10.1101/328260 — immunology — Posted on 2018-05-22

890 Does subjective sleep quality predict cognitive performance? - Evidence from three empirical studies

Zavecz, Z.; Galko, A.; Nemeth, D.; Janacsek, K.

10.1101/328369 — neuroscience — Posted on 2018-05-22

891 Complete diagnosis of leptospirosis in tropical reproductive cattle

Pacheco Sanchez, G.; Almeida de Lemos, F.; Dos Santos Paixao-Marques, M.; Alves-Martin, M. F.; Maisa Guiraldi, L.; Dos Santos, W. J.; Baldini Lucheis, S.

10.1101/327726 — microbiology — Posted on 2018-05-22

892 Description and charactrization of the Amazonian entomopathogenic bacterium Photorhabdus luminescens MN7

Kamitani, F. L.; Almenara, D. P.; Rossi, C.; Camargo Neves, M. R.; A. Müller, L. M.; Gruber, A.; P. Alves, J. M.; Yamaguchi, L. F.; Yoshida, N. C.; Kato, M. J.; Winter, C. E.

10.1101/328377 — microbiology — Posted on 2018-05-22

893 RCD1 Coordinates Chloroplastic and Mitochondrial Electron Transfer through Interaction with ANAC Transcription Factors

Kangasjarvi, J.; Shapiguzov, A.; Vainonen, J. P.; Hunter, K.; Tossavainen, H.; Tiwari, A.; Järvi, S.; Hellman, M.; Wybouw, B.; Aarabi, F.; Alseekh, S.; Sipari, N.; Nikkanen, L.; Van Der Kelen, K.; Krasensky-Wrzaczek, J.; Salojärvi, J.; Brosche, M.; Keinänen, M.; Tyystjärvi, E.; Rintamäki, E.; De Rybel, B.; Fernie, A. R.; van Breusegem, F.; Permi, P.; Aro, E.-M.; Wrzaczek, M.

10.1101/327411 — plant biology — Posted on 2018-05-22

894 No effect of administration of unacylated ghrelin on subcutaneous PC3 xenograft growth in a Rag1-/- mouse model of metabolic dysfunction

Maugham, M. L.; Chopin, L. K.; Seim, I.; Thomas, P. B.; Crisp, G. J.; Shah, E. T.; Herington, A. C.; Brown, K. A.; Gregory, L. S.; Nelson, C. C.; Jeffery, P. L.

10.1101/328351 — cancer biology — Posted on 2018-05-22

895 Antimicrobial peptides modulate long-term memory

Si, K.; Azpeleta, R. B.; Wu, J.; Gill, J.; Welte, R.; Seidel, C.

10.1101/328286 — neuroscience — Posted on 2018-05-22

896 Transition from a meiotic to a somatic-like DNA damage response during the pachytene stage in mouse meiosis

Andrea, E.-M.; Martin-Ruiz, M.; Garcia, E.; Gil-Fernandez, A.; Parra, M. T.; Viera, A.; Rufas, J. S.; Page, J.

10.1101/328278 — genetics — Posted on 2018-05-22

897 Revealing biases in the sampling of ecological interaction networks

de Aguiar, M.; Newman, E. A.; Pires, M. M.; Yeakel, J. D.; Hembry, D. H.; Boettinger, C.; Burkle, L. A.; Gravel, D.; Guimaraes, P. R.; O'Donnell, J. L.; Poisot, T.; Fortin, M.-J.; Ecological Network Dynamics Working Group at the National Institute for Mathematical and Biological,

10.1101/328245 — ecology — Posted on 2018-05-22

898 A survey of public attitudes towards third-party reproduction in Japan in 2014

Yamamoto, N.; Hirata, T.; Izumi, G.; Nakazawa, A.; Fukuda, S.; Neriishi, K.; Arakawa, T.; Takamura, M.; Harada, M.; Hirota, Y.; Koga, K.; Wada-Hiraike, O.; Fujii, T.; Irahara, M.; Osuga, Y.

10.1101/328229 — scientific communication and education — Posted on 2018-05-22

899 Haplopappus platylepis (Asteraceae) resin: an adhesive trap for pest control of crawling arthropods, with antimicrobial potentia

Villagra, Cristian A.;Macias-Marabolí, Verónica;Schapheer, Constanza;Bórquez, Jorge;Simirgiotis, Mario J.;Echeverría, Javier;González-Teuber, Marcia; Urzúa, Alejandro;

10.1101/328237 — biochemistry — Posted on 2018-05-22

900 Insights on the impact of mitochondrial organisation on bioenergetics in high-resolution computational models of cardiac cell architecture

GHOSH, S.; Tran, K.; Delbridge, L. M. D.; Hickey, A. J. R.; Hanssen, E.; Crampin, E. J.; Rajagopal, V.

10.1101/327254 — systems biology — Posted on 2018-05-22

901 Autophagy Decreases Alveolar Epithelial Cell Injury by Suppressing the NF-κB Signaling Pathway and Regulating the Release of Inflammatory Mediators

Fan, T.; Yang, S.; Huang, Z.; Wang, W.; Pan, S.; Xu, Y.; Zhang, B.; Mao, Z.; Fang, Y.; Guo, X.; Hu, H.; Geng, Q.

10.1101/328039 — cell biology — Posted on 2018-05-22

902 Some generic measures of the extent of chemical disequilibrium applied to living and abiotic systems

Intoy, B. F.; Halley, J. W.

10.1101/327783 — biophysics — Posted on 2018-05-22

903 Augmented Reality Powers a Cognitive Prosthesis for the Blind

Liu, Y.; Stiles, N. R. B.; Meister, M.

10.1101/321265 — animal behavior and cognition — Posted on 2018-05-22

904 Single-cell mRNA profiling reveals heterogeneous combinatorial expression of Hoxd genes during limb development

Fabre, P. J.; Leleu, M.; Mascrez, B.; Lo Giudice, Q.; Cobb, J.; Duboule, D.

10.1101/327619 — developmental biology — Posted on 2018-05-22

905 Hyperactive Rac1 drives MAPK-independent proliferation in melanoma by assembly of a mechanosensitive dendritic actin network

Mohan, A. S.; Dean, K. M.; Kasitinon, S. Y.; Isogai, T.; Siruvallur Murali, V.; Han, S. J.; Roudot, P.; Groisman, A.; Welf, E.; Danuser, G.

10.1101/326710 — cell biology — Posted on 2018-05-22

906 Using Core Genome Alignments to Assign Bacterial Species

Chung, M.; Munro, J. B.; Dunning Hotopp, J. C.

10.1101/328021 — microbiology — Posted on 2018-05-22

907 The interplay between demography and neutral evolution at the expansion front of a widespread conifer, Picea sitchensis

Elleouet, J. S.; Aitken, S. N.

10.1101/327742 — evolutionary biology — Posted on 2018-05-22

908 Incorporating Context into Language Encoding Models for fMRI

Jain, S.; Huth, A.

10.1101/327601 — neuroscience — Posted on 2018-05-21

909 Supragingival plaque microbiome ecology and functional potential in the context of health and disease

Espinoza, J.; Harkins, D.; Torralba, M.; Gomez, A.; Highlander, S.; Jones, M.; Leong, P.; Saffery, R.; Bockmann, M.; Kuelbs, C.; Inman, J.; Hughes, T.; Craig, J. M.; Nelson, K. E.; Dupont, C.

10.1101/325407 — microbiology — Posted on 2018-05-21

910 N4-acetylcytidine and 5-formylcytidine are present in Saccharomyces cerevisiae mRNAs

Tardu, M.; Lin, Q.; Koutmou, K.

10.1101/327585 — biochemistry — Posted on 2018-05-21

911 Identification of Casiopeina II-gly secondary targets through a systems pharmacology approach

de Anda-Jauregui, G.; Espinal-Enriquez, J.; Hur, J.; Alcala-Corona, S. A.; Ruiz-Azuara, L.; Hernandez-Lemus, E.

10.1101/327718 — systems biology — Posted on 2018-05-21

912 Reproductive longevity predicts mutation rates in primates

Thomas, G. W. C.; Wang, R. J.; Puri, A.; Harris, R. A.; Raveendran, M.; Hughes, D.; Murali, S.; Williams, L.; Doddapaneni, H.; Muzny, D.; Gibbs, R.; Abee, C.; Galinski, M. R.; Worley, K. C.; Rogers, J.; Radivojac, P.; Hahn, M. W.

10.1101/327627 — evolutionary biology — Posted on 2018-05-21

913 DISSEQT - DIStribution based modeling of SEQuence space Time dynamics

Henningsson, R.; Moratorio, G.; Borderia, A. V.; Vignuzzi, M.; Fontes, M.

10.1101/327338 — evolutionary biology — Posted on 2018-05-21

914 The host fruit amplifies mutualistic interactions between Ceratitis capitata larvae and associated bacteria.

Zaada, D. S. Y.; Ben-Yosef, M.; Yuval, B.; Jurkevitch, E.

10.1101/327668 — ecology — Posted on 2018-05-21

915 Extracellular Electron Transfer by Shewanella oneidensis Controls Pd Nanoparticle Phenotype

Dundas, C. M.; Graham, A. J.; Romanovicz, D. K.; Keitz, B. K.

10.1101/327460 — synthetic biology — Posted on 2018-05-21

916 Positive reward prediction errors strengthen incidental memory encoding

Jang, A.; nassar, m.; Dillon, D.; Frank, M. J.

10.1101/327445 — neuroscience — Posted on 2018-05-21

917 Impact of MMP-2 and MMP-9 activation on wound healing, tumor growth and RACPP cleavage

Ellies, L. G.; Hingorani, D. V.; Lippert, C. N.; Crisp, J. L.; Savariar, E. N.; Hasselmann, J. P. C.; Kuo, C. P. C.; Nguyen, Q. T.; Tsien, R. Y.; Whitney, M. A.

10.1101/327791 — cancer biology — Posted on 2018-05-21

918 Complex-centric proteome profiling by SEC-SWATH-MS

Heusel, M.; Bludau, I.; Rosenberger, G.; Hafen, R.; Frank, M.; Banaei-Esfahani, A.; Collins, B.; Gstaiger, M.; Aebersold, R.

10.1101/323683 — systems biology — Posted on 2018-05-21

919 Spikeling: a low-cost hardware implementation of a spiking neuron for neuroscience teaching and outreach.

Baden, T.; James, B.; Zimmermann, M. J.; Bartel, P.; Grijseels, D. M.; Lagnado, L.; Maravall, M.

10.1101/327502 — scientific communication and education — Posted on 2018-05-21

920 Knockdown of endogenous circulating C1 inhibitor induces neurovascular impairment, neuroinflammation and cognitive decline

Farfara, D.; Feierman, E.; Richards, A.; Revenko, A. S.; MacLeod, R. A.; Norris, E. H.; Strickland, S.

10.1101/216531 — neuroscience — Posted on 2018-05-21

921 Regional neutrality evolves through local adaptive niche evolution

Leibold, M. A.; Urban, M. C.; De Meester, L.; Klausmeier, C. A.; Vanoverbeke, J.

10.1101/326348 — ecology — Posted on 2018-05-21

922 Circulating proteomic patterns in AF related left atrial remodeling indicate involvement of coagulation and complement cascade

Kornej, J.; Büttner, P.; Hammer, E.; Engelmann, B.; Dinov, B.; Sommer, P.; Husser, D.; Hindricks, G.; Völker, U.; Bollmann, A.

10.1101/327759 — molecular biology — Posted on 2018-05-21

923 First report and multilocus genotyping of Enterocytozoon bieneusi from Tibetan pigs in southwestern China

Luo, R.; Xiang, L.; Liu, H.; Zhong, Z.; Liu, L.; Deng, L.; Song, Y.; Liu, L.; Huang, X.; Zhou, Z.; Fu, H.; Luo, Y.; Luo, R.

10.1101/327767 — genetics — Posted on 2018-05-21

924 The first one hundred nanometers inside the pre-synaptic terminal where calcium diffusion triggers vesicular release

Guerrier, C.; Holcman, D.

10.1101/326835 — biophysics — Posted on 2018-05-21

925 Next-generation Sequence-analysis Toolkit (NeST): A standardized bioinformatics framework for analyzing Single Nucleotide Polymorphisms in next-generation sequencing data

Ravishankar, S.; Schmedes, S. E.; Patel, D. S.; Plucinski, M.; Udhayakumar, V.; Talundzic, E.; Vannberg, F.

10.1101/323535 — bioinformatics — Posted on 2018-05-21

926 Transition State Interactions in a Promiscuous Enzyme: Sulfate and Phosphate Monoester Hydrolysis by Pseudomonas aeruginosa Arylsulfatase

van Loo, B.; Berry, R.; Boonyuen, U.; Mohamed, M. F.; Golicnik, M.; Hengge, A. C.; Hollfelder, F.

10.1101/327643 — biochemistry — Posted on 2018-05-21

927 StomataCounter: a deep learning method applied to automatic stomatal identification and counting

Fetter, K.; Eberhardt, S.; Barclay, R. S.; Wing, S.; Keller, S. R.

10.1101/327494 — plant biology — Posted on 2018-05-21

928 Diagnostic host gene signature to accurately distinguish enteric fever from other febrile diseases

Blohmke, C. J.; Muller, J.; Gibani, M.; Dobinson, H.; Shrestha, S.; Perinparajah, S.; Jin, C.; Hughes, H.; Blackwell, L.; Dongol, S.; Karkey, A.; Schreiber, F.; Pickard, D.; Basnyat, B.; Dougan, G.; Baker, S.; Pollard, A. J.; Darton, T. C.

10.1101/327429 — molecular biology — Posted on 2018-05-21

929 DYRK1A regulates the recruitment of 53BP1 to the sites of DNA damage in part through interaction with RNF169

Menon, V. R.; Ananthapadmanabhan, V.; Swanson, S.; Saini, S.; Sesay, F.; Yakovlev, V.; Florens, L.; DeCaprio, J. A.; Washburn, M. P.; Dozmorov, M.; Litovchick, L.

10.1101/327510 — molecular biology — Posted on 2018-05-21

Zhou, H.; Pan, J.; Purev, C.; Zhao, H.; Zhang, Z.; Wang, F.; Wendoule, N.; Qi, G.

10.1101/327536 — genomics — Posted on 2018-05-21

931 Discovery of gene regulatory elements through a new bioinformatics analysis of haploid genetic screens

Patel, B. B.; Lebensohn, A. M.; Carette, J. E.; Salzman, J.; Rohatgi, R.

10.1101/327775 — bioinformatics — Posted on 2018-05-21

932 Inference and visualization of DNA damage patterns using a grade of membership model

Al-Asadi, H.; Dey, K.; Novembre, J.; Stephens, M.

10.1101/327684 — bioinformatics — Posted on 2018-05-21

933 Prediction and inference diverge in biomedicine:Simulations and real-world data

Bzdok, D.; Engemann, D.-A.; Grisel, O.; Varoquaux, G.; Thirion, B.

10.1101/327437 — bioinformatics — Posted on 2018-05-21

934 A data mining paradigm for identifying key factors in biological processes using gene expression data

Li, J.; Zheng, L.; Uchiyama, A.; Bin, L.; Mauro, T. M.; Elias, P. M.; Pawelczyk, T.; Sakowicz-Burkiewicz, M.; Trzeciak, M.; Leung, D. Y. M.; Morasso, M. I.; Yu, P.

10.1101/327478 — bioinformatics — Posted on 2018-05-21

935 Optimization of Tenocyte Lineage-related Factors from Tonsil-derived Mesenchymal Stem Cells using Response Surface Methodology

Lee, S. Y.; Kim, H.; Shin, S.-J.; Kwon, S.-S.

10.1101/327734 — bioengineering — Posted on 2018-05-21

936 Metanalysis of genome-wide association studies for panic disorder suggest pathways and mechanisms of pathogenesis

Silva, R. X.; Rocha, S. P.; Souza, D. P.; Lima-Maximino, M. G.; Maximino, C.

10.1101/326017 — neuroscience — Posted on 2018-05-21

937 Identification of a post-transcriptional regulatory element that responds to glucose in the African trypanosome

Qiu, Y.; Shankar, V.; Noorai, R. E.; Yeung, N.; McAlpine, S. G.; Morris, J.

10.1101/327346 — genetics — Posted on 2018-05-21

938 phastWeb: a web interface for evolutionary conservation scoring of multiple sequence alignments using phastCons and phyloP

Ramani, R.; Krumholz, K.; Huang, Y.; Siepel, A.

10.1101/327569 — evolutionary biology — Posted on 2018-05-21

939 Dynamics of the sex ratio in Tetrahymena thermophila

Wang, G.; Chen, K.; Zhang, J.; Ma, X.; Deng, S.; Xiong, J.; He, X.; Fu, Y.-X.; Miao, W.

10.1101/327544 — evolutionary biology — Posted on 2018-05-21

940 The Effect of Hybridization on Dosage Compensation in Member Species of the Anopheles gambiae Species Complex

Deitz, K. C.; Takken, W.; Slotman, M. A.

10.1101/327577 — evolutionary biology — Posted on 2018-05-21

941 Bayesian analysis of isothermal titration calorimetry for binding thermodynamics

Nguyen, T. H.; Rustenburg, A. S.; Krimmer, S. G.; Zhang, H.; Clark, J. D.; Novick, P. A.; Branson, K.; Pande, V. S.; Chodera, J. D.; Minh, D. D. L.

10.1101/327676 — biophysics — Posted on 2018-05-21

942 VCPA: genomic variant calling pipeline and data management tool for Alzheimer’s Disease Sequencing Project

Leung, Y. Y.; Valladares, O.; Chou, Y.-F.; Lin, H.-J.; Kuzma, A. B.; Cantwell, L.; Qu, L.; Gangadharan, P.; Alzheimers Disease Sequencing Project (ADSP), ; Salerno, W. J.; Schellenberg, G. D.; Wang, L.-S.

10.1101/327395 — bioinformatics — Posted on 2018-05-21

943 Searching for rewards like a child means less generalization and more directed exploration

Schulz, E.; Wu, C. M.; Ruggeri, A.; Meder, B.

10.1101/327593 — animal behavior and cognition — Posted on 2018-05-21

944 Carpenter ants use diverse antennae sampling strategies to track odor trails

Draft, R. W.; McGill, M. R.; Kapoor, V.; Murthy, V. N.

10.1101/327379 — animal behavior and cognition — Posted on 2018-05-21

945 Cardioprotection by nicotinamide mononucleotide (NMN): Involvement of glycolysis and acidic pH.

Nadtochiy, S.; Wang, Y. T.; Nehrke, K.; Munger, J.; Brookes, P. S.

10.1101/230938 — biochemistry — Posted on 2018-05-21

946 Nuclear polymorphism and non-proliferative adult neurogenesis in human neural crest-derived cells.

Bueno, C.; Martinez-Morga, M.; Martinez, S.

10.1101/325613 — neuroscience — Posted on 2018-05-21

947 Evolution of developmental plasticity by opposing dosage of signalling-modifying enzymes

Bui, L. T.; Ivers, N. A.; Ragsdale, E. J.

10.1101/326447 — evolutionary biology — Posted on 2018-05-21

948 Developmental factors associated with decline in grip strength from midlife to old age: a British birth cohort study

Kuh, D.; Hardy, R.; Blodgett, J.; Cooper, R.

10.1101/327247 — epidemiology — Posted on 2018-05-21

949 A double-blinded randomised placebo-controlled phase II trial to evaluate high dose rifampicin for tuberculous meningitis: a dose finding study

Dian, S.; Yunivita, V.; Ganiem, A. R.; Pramaesya, T.; Chaidir, L.; Wahyudi, K.; Achmad, T. H.; Colbers, A.; te Brake, L. H. M.; van Crevel, R.; Ruslami, R.; Aarnoutse, R.

10.1101/326587 — clinical trials — Posted on 2018-05-21

950 Genetic determinants of risk and survival in pulmonary arterial hypertension

Rhodes, C.; Batai, K.; Bleda, M.; Haimel, M.; Southgate, L.; Germain, M.; Pauciulo, M.; Hadinnapola, C.; Girerd, B.; Arora, A.; Knight, J.; Hanscombe, K.; Karnes, J.; Kaakinen, M.; Gall, H.; Ulrich, A.; Harbaum, L.; Aman, J.; Cebola, I.; Ferrer, J.; NIHR BioResource Rare Diseases Consortium, ; UK PAH Cohort Study Consortium, ; US PAH Biobank Consortium, ; Ahmad, F.; Amouyel, P.; Archer, S.; Argula, R.; Austin, E.; Badesch, D.; Bakshi, S.; Barnett, C.; Benza, R.; Bhatt, N.; Bogaard, H.; Burger, C.; Chakinala, M.; Church, C.; Coghlan, J.; Condliffe, R.; Corris, P.; Danesino, C.; Debette, S.;

10.1101/317164 — genetics — Posted on 2018-05-21

951 Cell type-dependent effects of ellagic acid on cellular metabolism

Boehning, A. L.; Essien, S. A.; Underwood, E. L.; Dash, P. K.; Boehning, D.

10.1101/319533 — cell biology — Posted on 2018-05-21

952 Estrogen Signaling in Arcuate Kiss1 Neurons Suppresses a Sex-Dependent Circuit That Promotes Dense Strong Bones in Female Mice

Herber, C. B.; Krause, W. C.; Wang, L.; Bayrer, J. R.; Li, A.; Schmitz, M. T.; Fields, A.; Ford, B.; Reid, M. S.; Nomura, D. K.; Nissenson, R. A.; Correa, S. M.; Ingraham, H. A.

10.1101/315283 — physiology — Posted on 2018-05-21

953 Obesity restricts oligodendrocyte maturation and impedes repair after white matter stroke

Xiao, G.; Burguet, J.; Kawaguchi, R.; Havton, L. A.; Hinman, J. D.

10.1101/283184 — neuroscience — Posted on 2018-05-21

954 Audible Feedback Improves Internal Model Strength and Performance of Myoelectric Prosthesis Control

Shehata, A. W.; Scheme, E. J.; Sensinger, J. W.

10.1101/259754 — bioengineering — Posted on 2018-05-21

955 Causal interactions from proteomic profiles: molecular data meets pathway knowledge

Babur, O.; Luna, A.; Korkut, A.; Durupinar, F.; Siper, M. C.; Dogrusoz, U.; Aslan, J. E.; Sander, C.; Demir, E.

10.1101/258855 — systems biology — Posted on 2018-05-21

956 Analog Signalling with ‘Digital’ Molecular Switches

Clarke, S. E.

10.1101/256032 — neuroscience — Posted on 2018-05-21

957 Insights into circovirus host range from the genomic fossil record.

Dennis, T. P. W.; Flynn, P. J.; De Souza, W. M.; Singer, J. B.; Moreau, C.; Wilson, S. J.; Gifford, R. J.

10.1101/246777 — microbiology — Posted on 2018-05-21

958 ZMPSTE24 Missense Mutations that Cause Progeroid Diseases Decrease Prelamin A Cleavage Activity and/or Protein Stability

Spear, E.; Hsu, E.-T.; Nie, L.; Carpenter, E. P.; Hrycyna, C.; Michaelis, S.

10.1101/198069 — cell biology — Posted on 2018-05-21

959 SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework

Sanchez, B. J.; Li, F.; Kerkhoven, E. J.; Nielsen, J.

10.1101/324863 — systems biology — Posted on 2018-05-21

960 Profiles of cooperative brains: A discriminant analysis of cleaner and client fish monoaminergic responses to different social contexts

Maximino, C.; Gomes, A. C.; Sander de Abreu, M.; Cardoso, S.; Lima-Maximino, M. G.; Winberg, S.; Soares, M.

10.1101/326843 — neuroscience — Posted on 2018-05-21

961 Modelling the distribution of white matter hyperintensities due to ageing on MRI images using Bayesian inference

Sundaresan, V.; Griffanti, L.; Kindalova, P.; Alfaro-Almagro, F.; Zamboni, G.; Rothwell, P. M.; Nichols, T. E.; Jenkinson, M.

10.1101/327205 — neuroscience — Posted on 2018-05-21

962 Long-read sequencing identified a causal structural variant in an exome-negative case and enabled preimplantation genetic diagnosis

Miao, H.; Zhou, J.; Yang, Q.; Liang, F.; Wang, D.; Ma, N.; Gao, B.; Du, J.; Lin, G.; Wang, K.; Zhang, Q.

10.1101/326496 — genetics — Posted on 2018-05-21

963 NECorr, a Tool to Rank Gene Importance in Biological Processes using Molecular Networks and Transcriptome Data

Liseron-Monfils, C. V.; Olson, A.; Ware, D.

10.1101/326868 — systems biology — Posted on 2018-05-21

964 Assessing 42 inflammatory markers in 321 control subjects and 887 major depressive disorder cases: BMI and other confounders and overall predictive ability for current depression

Powell, T. R.; Gaspar, H. A.; Chung, R.; Keohane, A.; Gunasinghe, C.; Uher, R.; Aitchison, K. J.; Souery, D.; Mors, O.; Maier, W.; Zobel, A.; Rietschel, M.; Henigsberg, N.; Dernovsek, M. Z.; Hauser, J.; Frissa, S.; Goodwin, L.; Hotopf, M.; Hatch, S. L.; Collier, D. A.; Wang, H.; Breen, G.

10.1101/327239 — neuroscience — Posted on 2018-05-21

965 Genome sequence and description of Blautia brookingsii str SG772 nov., a new species of anaerobic bacterium isolated from healthy human gut

Ghimire, S.; Kumar, R.; Nelson, E.; Christopher-Hennings, J.; Scaria, J.

10.1101/327007 — microbiology — Posted on 2018-05-21

966 Infections patterns and fitness effects of Rickettsia and Sodalis symbionts in the green lacewing Chrysoperla carnea

Sontowski, R.; Gerth, M.; Richter, S.; Gruppe, A.; Schlegel, M.; van Dam, N.; Bleidorn, C.

10.1101/327130 — evolutionary biology — Posted on 2018-05-21

967 Healthy Ageing and Sentence Production: Impaired Lexical Access in the Context of Intact Syntactic Planning

Hardy, S. M.; Segaert, K.; Wheeldon, L.

10.1101/327304 — neuroscience — Posted on 2018-05-21

968 Effects of line orientation in visual evoked potentials. Spatial dynamics, and gender differences of neural oblique effect.

Mikhailova, E.; Gerasimenko, N.; Slavutskaya, A.

10.1101/323782 — neuroscience — Posted on 2018-05-21

969 Electric field dependent effects of motor cortical TDCS

Laakso, I.; Mikkonen, M.; Koyama, S.; Ito, D.; Yamaguchi, T.; Hirata, A.; Tanaka, S.

10.1101/327361 — neuroscience — Posted on 2018-05-21

970 Using the Wax moth larva Galleria mellonella infection model to detect emerging bacterial pathogens

Hernandez, R.; Hesse, E.; Dowling, A.; Coyle, N.; Feil, E.; Gaze, W.; Vos, M.

10.1101/327015 — microbiology — Posted on 2018-05-21

971 Bioinformatic characterisation of the effector repertoire of the strawberry pathogen Phytophthora cactorum

Armitage, A. D.; Lysoe, E.; Nellist, C. F.; Lewis, L.; Cano, L. M.; Brurberg, M. B.; Harrison, R.

10.1101/321141 — pathology — Posted on 2018-05-21

972 Decreased RORC expression and downstream signaling in HTLV-1-associated Adult T-cell Lymphoma/Leukemia uncovers an antiproliferative IL17 link: a potential target for immunotherapy?

Subramanian, K.; Dierckx, T.; Khouri, R.; Menzes, S. M.; Farre, L.; Bittencourt, A.; Kataoka, K.; Ogawa, S.; Van Weyenbergh, J.

10.1101/326900 — immunology — Posted on 2018-05-21

973 De novo assembly of a young Drosophila Y chromosome using Single-Molecule sequencing and Chromatin Conformation capture

Mahajan, S.; Wei, K.; Nalley, M.; Gibilisco, L.; Bachtrog, D.

10.1101/324673 — genomics — Posted on 2018-05-21

974 The S. cerevisiae Hrq1 and Pif1 DNA helicases synergistically modulate telomerase activity in vitro

Nickens, D. G.; Rogers, C. M.; Bochman, M. L.

10.1101/327320 — biochemistry — Posted on 2018-05-21

975 FALCON-Phase: Integrating PacBio and Hi-C data for phased diploid genomes

Kronenberg, Z. N.; Hall, R. J.; Hiendleder, S.; Smith, T. P. L.; Sullivan, S. T.; Williams, J. L.; Kingan, S. B.

10.1101/327064 — genomics — Posted on 2018-05-21

976 Species-habitat networks: Bridging applied ecology and network theory

Marini, L.; Bartomeus, I.; Rader, R.; Lami, F.

10.1101/326041 — ecology — Posted on 2018-05-21

977 The EVcouplings Python framework for coevolutionary sequence analysis

Hopf, T. A.; Green, A. G.; Schubert, B.; Mersmann, S.; Schaerfe, C. P. I.; Ingraham, J. B.; Toth-Petroczy, A.; Brock, K.; Riesselman, A.; Kang, C.; Dallago, C.; Sander, C.; Marks, D. S.

10.1101/326918 — bioinformatics — Posted on 2018-05-21

978 Emergent Elasticity in the Neural Code for Space

Ocko, S.; Hardcastle, K.; Giocomo, L. M.; Ganguli, S.

10.1101/326793 — neuroscience — Posted on 2018-05-21

979 Generation and Selection of a Panel of Pan-Filovirus Single-Chain Antibodies using Cell-Free Ribosome Display

Kunamneni, A.; C. Clarke, E.; Ye, C.; Bradfute, S.; Durvasula, R.

10.1101/327296 — immunology — Posted on 2018-05-21

980 Social learning strategies regulate the wisdom and madness of interactive online crowds

Toyokawa, W.; Whalen, A.; Laland, K. N.

10.1101/326637 — animal behavior and cognition — Posted on 2018-05-21

981 Reconstruction of consensus tissue-specific metabolic models

Correia, S.; Costa, B.; Rocha, M.

10.1101/327262 — systems biology — Posted on 2018-05-21

982 Instant Automated Inference of Perceived Mental Stress through Smartphone PPG and Thermal Imaging

Cho, Y.; Julier, S. J.; Bianchi-Berthouze, N.

10.1101/326157 — physiology — Posted on 2018-05-21

983 Inflammation is the main risk factor of voriconazole overdose in hematological patients

Gautier-Veyret, E.; Truffot, A.; Bailly, S.; Fonrose, X.; Thiebaut-Bertrand, A.; Tonini, J.; Cahn, J.-Y.; Stanke-Labesque, F.

10.1101/326595 — pharmacology and toxicology — Posted on 2018-05-21

984 PROTEOME-WIDE ANALYSIS OF CD8+ T CELL RESPONSES TO EBV REVEALS DIFFERENCES BETWEEN PRIMARY AND PERSISTENT INFECTION

Forrest, C.; Hislop, A. D.; Rickinson, A. B.; Zuo, J.

10.1101/327312 — immunology — Posted on 2018-05-21

985 ICeD-T Provides Accurate Estimates of Immune Cell Abundance in Tumor Samples by Allowing For Aberrant Gene Expression Patterns

Wilson, D. R.; Ibrahim, J. G.; Sun, W.

10.1101/326421 — genomics — Posted on 2018-05-21

986 Model-driven design and evolution of non-trivial synthetic syntrophic pairs

Lloyd, C. J.; King, Z.; Sandberg, T.; Hefner, Y.; Olson, C.; Phaneuf, P.; O'Brien, E.; Feist, A.

10.1101/327270 — systems biology — Posted on 2018-05-21

987 A comparison of auditory oddball responses in dorsolateral prefrontal cortex, basolateral amygdala and auditory cortex of macaque

Camalier, C.; Scarim, K. C.; Mishkin, M.; Averbeck, B.

10.1101/326280 — neuroscience — Posted on 2018-05-21

988 Transformation from auditory to linguistic representations across auditory cortex is rapid and attention dependent for continuous speech

Brodbeck, C.; Hong, L. E.; Simon, J. Z.

10.1101/326785 — neuroscience — Posted on 2018-05-21

989 Simple but Robust Improvement in Multivoxel Pattern Classification

Lee, S.; Kable, J.

10.1101/326389 — neuroscience — Posted on 2018-05-21

990 Self-organising coordinate transformation with peaked and monotonic gain modulation in the primate dorsal visual pathway

Navarro, D. M.; Mender, B. M. W.; Smithson, H. E.; Stringer, S. M.

10.1101/327288 — neuroscience — Posted on 2018-05-21

991 A rational account of human memory search

Zhang, Q.; Anderson, J. R.

10.1101/326397 — animal behavior and cognition — Posted on 2018-05-21

992 Circuit mechanisms for the maintenance and manipulation of information in working memory

Masse, N. Y.; Yang, G. R.; Song, H. F.; Wang, X.-J.; Freedman, D. J.

10.1101/305714 — neuroscience — Posted on 2018-05-21

993 Mapping molecular datasets back to the brain regions they are extracted from: Remembering the native countries of hypothalamic expatriates and refugees

Khan, A. M.; Grant, A. H.; Martinez, A.; Burns, G. A.; Thatcher, B. S.; Anekonda, V. T.; Thompson, B. W.; Roberts, Z. S.; Moralejo, D. H.; Blevins, J. E.

10.1101/307652 — neuroscience — Posted on 2018-05-21

994 Deactivation and Mislocalization of a kinase protein induced by a single amino acid mutation on the proton transport catalytic aspartic acid

Zhang, Y.; Lai, B. S.

10.1101/282822 — biochemistry — Posted on 2018-05-21

995 Quantifying Immune-Based Counterselection of Somatic Mutations

Yang, F.; Kim, D.-K.; Nakagawa, H.; Hayashi, S.; Imoto, S.; Stein, L.; Roth, F.

10.1101/219576 — genetics — Posted on 2018-05-21

996 In search of the Goldilocks zone for hybrid speciation

Blanckaert, A.; Bank, C.

10.1101/266254 — evolutionary biology — Posted on 2018-05-21

997 Prediction Error and Repetition Suppression Have Distinct Effects on Neural Representations of Visual Information

Tang, M. F.; Smout, C. A.; Arabzadeh, E.; Mattingley, J. B.

10.1101/213710 — neuroscience — Posted on 2018-05-21

998 Rethinking dopamine prediction errors

Gardner, M. P. H.; Schoenbaum, G.; Gershman, S. J.

10.1101/239731 — neuroscience — Posted on 2018-05-21

999 Novel Molecular Classification of Muscle-Invasive Bladder Cancer Opens New Treatment Opportunities

Trilla-Fuertes, L.; Gamez-Pozo, A.; Prado-Vazquez, G.; Zapater-Moros, A.; Diaz-Almiron, M.; Arevalillo, J. M.; Ferrer-Gomez, M.; Navarro, H.; Main, P.; Espinosa, E.; Pinto, A.; Fresno Vara, J. A.

10.1101/327114 — cancer biology — Posted on 2018-05-21

1000 Photodynamic therapy effect on the ultrastructure of Trichomonas vaginalis trophozoites and their effectiveness in experimentally infected animals.

Fonseca, T.; Gomes, J.; Alacoque, M.; Vannier-Santos, M.; Gomes, M.; Busatti, H.

10.1101/327189 — pharmacology and toxicology — Posted on 2018-05-21

1001 Pseudomonas aeruginosa displays a dormancy phenotype during long-term survival in water.

Lewenza, S.; Abboud, J. M.; Poon, K.; Kobryn, M.; Humplik, I.; Bell, J. R.; Mardan, L.; Reckseidler-Zenteno, S. L.

10.1101/327163 — microbiology — Posted on 2018-05-21

1002 The connexin 43 regulator Rotigaptide reduces cytokine-induced cell death in human islets

Ghiasi, S. M.; HANSEN, J. B.; CHRISTENSEN, D. P.; Mandrup-Poulsen, T.

10.1101/327171 — immunology — Posted on 2018-05-21

1003 T Cell Repertoire Evolution After Allogeneic Bone Marrow Transplantation: An Organizational Perspective

Meier, J.; Fawaz, M.; Abdeen, H.; Reed, J.; Kanakry, C.; Luznik, L.; Toor, A.

10.1101/326744 — immunology — Posted on 2018-05-21

1004 Modeling effects of crop production, energy development and conservation-grassland loss on avian habitat

Shaffer, J. A.; Roth, C. L.; Mushet, D. M.

10.1101/327148 — ecology — Posted on 2018-05-21

1005 Reinterpretation of the localization of the ATP binding cassette transporter ABCG1 in insulin-secreting cells and insights regarding its trafficking and function

Harris, M. T.; Hussain, S. S.; Inouye, C. M.; Castle, A. M.; Castle, J. D.

10.1101/327155 — cell biology — Posted on 2018-05-21

1006 The fate of hippocampal synapses depends on the sequence of plasticity-inducing events

Wiegert, J. S.; Pulin, M.; Gee, C. E.; Oertner, T. G.

10.1101/326942 — neuroscience — Posted on 2018-05-21

1007 A whole-brain and cross-diagnostic perspective on functional brain network dysfunction

Spronk, M.; Kulkarni, K.; Ji, J. L.; Keane, B.; Anticevic, A.; Cole, M. W.

10.1101/326728 — neuroscience — Posted on 2018-05-21

1008 RNA components of the spliceosome regulate tissue- and cancer-specific alternative splicing

Dvinge, H.; Guenthoer, J.; Porter, P. L.; Bradley, R. K.

10.1101/326983 — genomics — Posted on 2018-05-21

1009 Integrating Hi-C and FISH data for modeling 3D organizations of chromosomes

Abbas, A.; He, X.; Zhou, B.; Zhu, G.; Ma, Z.; Gao, J.-T.; Zhang, M. Q.; Zeng, J.

10.1101/318493 — bioinformatics — Posted on 2018-05-21

1010 Transformation from auditory to linguistic representations across auditory cortex is rapid and attention dependent for continuous speech

Brodbeck, C.; Hong, L. E.; Simon, J. Z.

10.1101/326785 — neuroscience — Posted on 2018-05-21

1011 Sensory cheating: adversarial body patterns can fool a convolutional visual system during signaling

Laan, A.; de Polavieja, G.

10.1101/326652 — neuroscience — Posted on 2018-05-21

1012 Urine proteome changes in a TNBS-induced colitis rat model

Qin, W.; Wang, T.; Li, L.; Huang, H.; Gao, Y.

10.1101/327080 — molecular biology — Posted on 2018-05-21

1013 The Effect of Previous Life Cycle Phase on the Growth Kinetics, Morphology and Antibiotic Resistance of Salmonella Typhimurium DT104 in Brain Heart Infusion and Ground Chicken Extract

Hawkins, J.; Uknalis, J.; Oscar, T. P.; Schwarz, J. G.; Vimini, B.; Parveen, S.

10.1101/326579 — microbiology — Posted on 2018-05-21

1014 Comprehensive profiling of translation initiation in influenza virus infected cells

Machkovech, H. M.; Bloom, J. D.; Subramaniam, A. R.

10.1101/326967 — microbiology — Posted on 2018-05-21

1015 Growth zone segmentation in the milkweed bug Oncopeltus fasciatus sheds light on the evolution of insect segmentation

Auman, T.; Chipman, A. D.

10.1101/327106 — developmental biology — Posted on 2018-05-21

1016 Low frequency ultrasound enhances chemotherapy sensitivity and induces autophagy in human paclitaxel resistance prostate cancer PC-3R cells through the ERs-mediated PI3K/Akt/mTOR signaling pathway

Wu, Y.; Liu, X.; Qin, Z.; Wang, X.

10.1101/326629 — cancer biology — Posted on 2018-05-21

1017 Structural relationship between the putative hair cell mechanotransduction channel TMC1 and TMEM16 proteins

Ballesteros, A.; Fenollar-Ferrer, C.; Swartz, K. J.

10.1101/327072 — biophysics — Posted on 2018-05-21

1018 Regulation of IRAK1 Ubiquitination by the Antiviral Radical SAM Enzyme Viperin

Dumbrepatil, A. B.; Ghosh, S.; Patel, A. M.; Malec, P. A.; Zegalia, K.; Hoff, J. D.; Kennedy, R. T.; Marsh, E. N. G.

10.1101/318840 — biochemistry — Posted on 2018-05-21

1019 Mitochondrial ClpX activates an essential metabolic enzyme through partial unfolding

Kardon, J. R.; Moroco, J. A.; Engen, J. R.; Baker, T. A.

10.1101/327056 — biochemistry — Posted on 2018-05-21

1020 Overlooked roles of DNA damage and maternal age in generating human germline mutations

Gao, Z.; Moorjani, P.; Amster, G.; Przeworski, M.

10.1101/327098 — genetics — Posted on 2018-05-21

1021 EternaBrain: Automated RNA design through move sets from an Internet-scale RNA videogame

Koodli, R.; Keep, B.; Coppess, K. R.; Portela, F.; Eterna Players, ; Das, R.

10.1101/326736 — bioinformatics — Posted on 2018-05-21

1022 DAF-16/Foxo suppresses the transgenerational sterility of prg-1 piRNA mutants via a systemic small RNA pathway

Simon, M.; Spichal, M.; Heestand, B.; Frenk, S.; Hedges, A.; Godwin, M.; Wellman, A.; Sakaguchi, A.; Ahmed, S.

10.1101/326751 — genetics — Posted on 2018-05-20

1023 Proteomic Analysis of NRROS Interactome Reveals the Presence of Chaperones and Mediators of the ERAD Pathway

Noubade, R.; Phung, Q.; Phung, W.; Verschueren, E.; Lau, L.; Konno, H.; Lill, J.; Ouyang, W.

10.1101/326512 — biochemistry — Posted on 2018-05-20

1024 Hybridization and postzygotic isolation promote reinforcement of male mating preferences in a diverse group of fishes with traditional sex roles

Moran, R. L.; Zhou, M.; Catchen, J. M.; Fuller, R. C.

10.1101/325498 — evolutionary biology — Posted on 2018-05-20

1025 Phylodynamic model adequacy using posterior predictive simulations

Duchene, S.; Bouckaert, R.; Duchene, D. A.; Stadler, T.; Drummond, A. J.

10.1101/255596 — bioinformatics — Posted on 2018-05-20

1026 Meta-Analysis of ERP Investigations of Pain Empathy underlines methodological issues in ERP research.

Coll, M.-P.

10.1101/225474 — neuroscience — Posted on 2018-05-20

1027 Prioritized memory access explains planning and hippocampal replay

Mattar, M. G.; Daw, N. D.

10.1101/225664 — neuroscience — Posted on 2018-05-20

1028 Knock-down of endogenous circulating C1 inhibitor induces neurovascular impairment and neuroinflammation

Farfara, D.; Feierman, E.; Richards, A.; Revenko, A. S.; MacLeod, R. A.; Norris, E. H.; Strickland, S.

10.1101/216531 — neuroscience — Posted on 2018-05-20

1029 Evolution of developmental plasticity by opposing dosage of signalling-modifying enzymes

Bui, L. T.; Ivers, N. A.; Ragsdale, E. J.

10.1101/326447 — evolutionary biology — Posted on 2018-05-20

1030 Simultaneous CO2 and CO methanation using microbes

Kohlmayer, M.; Huber, R.; Brotsack, R.; Mayer, W.

10.1101/326561 — microbiology — Posted on 2018-05-20

1031 Correlation of in vitro susceptibility based on MICs and SQLE mutations with clinical response to terbinafine in patients with tinea corporis/cruris

Khurana, A.; Masih, A.; Chowdhary, A.; Sardana, K.; Borker, S.; Gupta, A.; Gautam, R.; Sharma, P.; Jain, D.

10.1101/326603 — microbiology — Posted on 2018-05-20

1032 Replication of MERS and SARS coronaviruses in bat cells offers insights to their ancestral origins

Lau, S.; Fan, R. Y.; Luk, H. K. H.; Zhu, L.; Fung, J.; Li, K. S.; Wong, E. Y. M.; Ahmed, S. S.; Chan, J. F. W.; Kok, K.-H.; Chan, K.-H.; Wernery, U.; Yuen, K.-y.; Woo, P. C. Y.

10.1101/326538 — microbiology — Posted on 2018-05-20

1033 Degenerative expansion of a young supergene

Stolle, E.; Pracana, R.; Howard, P.; Paris, C. I.; Brown, S. J.; Castillo-Carrillo, C. A.; Rossiter, S. J.; Wurm, Y.

10.1101/326645 — evolutionary biology — Posted on 2018-05-20

1034 When parasites are selected to kill the young

Iritani, R.; Visher, E.; Boots, M.

10.1101/324632 — ecology — Posted on 2018-05-20

1035 Molecular dynamics simulation reveals that switchable combinations of β-sheets underlie the prion-like properties of α-synuclein amyloids.

Otaki, H.; TAGUCHI, Y.; Nishida, N.

10.1101/326462 — molecular biology — Posted on 2018-05-20

1036 Fragment-based screening identifies inhibitors of the ATPase activity and of hexamer formation of Cagα from the Helicobacter pylori type IV secretion system

Arya, T.; Oudouhou, F.; Casu, B.; Bessette, B.; Sygusch, J.; Baron, C.

10.1101/326413 — microbiology — Posted on 2018-05-20

1037 The Drosophila SWI/SNF chromatin-remodeling complexes play separate roles in regulating growth and cell fate during regeneration

Tian, Y.; Smith-Bolton, R. K.

10.1101/326439 — developmental biology — Posted on 2018-05-20

1038 Merging in-solution X-ray and neutron scattering data allows fine structural analysis of membrane-protein detergent complexes

Dias-Mirandela, G.; Tamburrino, G.; Ivanovic, M. T.; Strnad, F. M.; Byron, O.; Rasmussen, T.; Hoskisson, P. A.; Hub, J. S.; Zachariae, U.; Gabel, F.; Javelle, A.

10.1101/324103 — biophysics — Posted on 2018-05-20

1039 Emergence of a node-like population within an in vitro derived Neural Mesodermal Progenitors (NMPs) population

Edri, S.; Hayward, P.; Jawaid, W.; Martinez Arias, A.

10.1101/326371 — developmental biology — Posted on 2018-05-20

1040 Oncogenic Wnt/STOP signaling regulates ribosome biogenesis in vivo

Madan, B.; HARMSTON, N.; Nallan, G.; Montoya, A.; Faull, P.; Petretto, E.; Virshup, D. M. M.

10.1101/326819 — cancer biology — Posted on 2018-05-20

1041 Diurnal active photolocation enhances predator detection in a marine fish

Santon, M.; Bitton, P.-P.; Dehm, J.; Fritsch, R.; Harant, U. K.; Anthes, N.; Michiels, N. K.

10.1101/324202 — zoology — Posted on 2018-05-19

1042 A novel approach of human geroprotector discovery by targeting the converging subnetworks of aging and age-related diseases

Yang, J.; Zhang, B.; Houten, S.; Schadt, E.; Zhu, J.; Suh, Y.; Tu, Z.

10.1101/326264 — systems biology — Posted on 2018-05-19

1043 Deficiency for Piwi results in transmission of a heritable stress that promotes longevity via DAF-16/Foxo

Heestand, B.; Simon, M.; Frenk, S.; Ahmed, S.

10.1101/326769 — genetics — Posted on 2018-05-19

1044 Fast open modification spectral library searching through approximate nearest neighbor indexing

Bittremieux, W.; Meysman, P.; Noble, W. S.; Laukens, K.

10.1101/326173 — bioinformatics — Posted on 2018-05-19

1045 Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

Liu, L.; Liu, C.; Wu, L.; Quintero, A.; Yuan, Y.; Wang, M.; Cheng, M.; Xu, L.; Dong, G.; Li, R.; Liu, Y.; Wei, X.; Xu, J.; Chen, X.; Lu, H.; Chen, D.; Wang, Q.; Zhou, Q.; Lin, X.; Li, G.; Liu, S.; Wang, Q.; Wang, H.; Fink, J. L.; Gao, Z.; Liu, X.; Hou, Y.; Zhu, S.; Yang, H.; Ye, Y.; Chen, F.; Herrmann, C.; Eils, R.; Shang, Z.; Xu, X.

10.1101/316208 — genomics — Posted on 2018-05-19

1046 GREIN: An interactive web platform for re-analyzing GEO RNA-seq data

Al Mahi, N.; Najafabadi, M. F.; Pilarczyk, M.; Kouril, M.; Medvedovic, M.

10.1101/326223 — bioinformatics — Posted on 2018-05-19

1047 Observed Antibody Space: a resource for data mining next generation sequencing of antibody repertoires

Kovaltsuk, A.; Leem, J.; Kelm, S.; Snowden, J.; Deane, C. M.; Krawczyk, K.

10.1101/316026 — immunology — Posted on 2018-05-19

1048 Custom hereditary breast cancer gene panel selectively amplifies target genes for reliable variant calling

Amuzu, S.; Revil, T.; Foulkes, W. D.; Ragoussis, J.

10.1101/322180 — genetics — Posted on 2018-05-19

1049 Dose Escalation for Locally Advanced Pancreatic Cancer: How High Can We Go?

Colbert, L. E.; Rebueno, N.; Moningi, S.; Beddar, S.; Sawakuchi, G. O.; Herman, J. M.; Koong, A. C.; Das, P.; Holliday, E. B.; Koay, E. J.; Taniguchi, C. M.

10.1101/324129 — clinical trials — Posted on 2018-05-19

1050 A probabilistic approach to using big data reveals Complex I as a potential Alzheimer’s disease therapeutic target

Celik, S.; Russell, J. C.; Pestana, C. R.; Lee, T.-I.; Mukherjee, S.; Crane, P. K.; Keene, D.; Bobb, J. F.; Kaeberlein, M.; Lee, S.-I.

10.1101/302737 — systems biology — Posted on 2018-05-19

1051 Motor cortical inactivation reduces the gain of kinematic primitives in mice performing a hold-still center-out reach task

Bollu, T.; Whitehead, S. C.; Prasad, N.; Walker, J. R.; Shyamkumar, N.; Subramaniam, R.; Kardon, B. M.; Cohen, I.; Goldberg, J. H.

10.1101/304907 — neuroscience — Posted on 2018-05-19

1052 The cellular NMD pathway restricts Zika virus infection and is targeted by the viral capsid protein

Fontaine, K. A.; Leon, K. E.; Khalid, M. M.; Jimenez-Morales, D.; Tomar, S.; Dunlap, M.; Kaye, J. A.; Shah, P. S.; Finkbeiner, S.; Krogan, N. J.; Ott, M.

10.1101/290296 — microbiology — Posted on 2018-05-19

1053 Human macrophages survive and adopt activated genotypes in living zebrafish

Paul, C. D.; Devine, A.; Bishop, K.; Xu, Q.; Wulftange, W. J.; Burr, H.; Daly, K. M.; Lewis, C.; Green, D. S.; Staunton, J. R.; Choksi, S.; Liu, Z.-G.; Sood, R.; Tanner, K.

10.1101/181685 — developmental biology — Posted on 2018-05-19

1054 Gene2Vec: Distributed Representation of Genes Based on Co-Expression

Du, J.; Jia, P.; Dai, Y.; Tao, C.; Zhao, Z.; Zhi, D.

10.1101/286096 — bioinformatics — Posted on 2018-05-19

1055 Electron transfer dictates metabolic reprogramming in proliferating cells under hypoxia

Wang, Y.; Liu, M.; Ruan, Y.; Chu, Q.; Cui, Y.; Chen, C.; Ying, G.; Li, B.

10.1101/244616 — biochemistry — Posted on 2018-05-19

1056 Failure to reactivate salient episodic information during indirect and direct tests of memory retrieval

Price, M. H.; Johnson, J. D.

10.1101/189522 — neuroscience — Posted on 2018-05-19

1057 Fatherhood alters gene expression within the MPOA

Seelke, A. M. H.; Bond, J. M.; Simmons, T. C.; Joshi, N.; Settles, M. L.; Stolzenberg, D.; Rhemtulla, M.; Bales, K. L.

10.1101/258111 — neuroscience — Posted on 2018-05-19

1058 Aerobiosis is not associated with GC content and G to T mutations are not the signature of oxidative stress in prokaryotic evolution

Aslam, S.; Lan, X.-R.; Zhang, B.-W.; Chen, Z.-L.; Niu, D.-K.

10.1101/154534 — evolutionary biology — Posted on 2018-05-19

1059 Temperature-dependent nanomechanics and topography of bacteriophage T7

Vörös, Z.; Csik, G.; Herenyi, L.; Kellermayer, M.

10.1101/326520 — microbiology — Posted on 2018-05-19

1060 Chronic Physical Disturbance Substantially Alters the Response of Biological Soil Crusts to a Wetting Pulse, as Characterized by Metatranscriptomic Sequencing

Steven, B.; Belnap, J.; Kuske, C.

10.1101/326181 — microbiology — Posted on 2018-05-19

1061 Methicillin-resistant Staphylococcus aureus CC22-MRSA-IV as an agent of dairy cow intramammary infections.

Magro, G.; Rebolini, M.; Beretta, D.; Piccinini, R.

10.1101/326553 — microbiology — Posted on 2018-05-19

1062 Attenuation of influenza A virus disease severity by viral co-infection in a mouse model

Gonzalez, A. J.; Ijezie, E. C.; Balemba, O. B.; Miura, T. A.

10.1101/326546 — microbiology — Posted on 2018-05-19

1063 CRISPRO Identifies Functional Protein Coding Sequences Based on Genome Editing Dense Mutagenesis

Schoonenberg, V. A. C.; Cole, M. A.; Yao, Q.; Macias-Trevino, C.; Sher, F.; Schupp, P. G.; Canver, M. C.; Maeda, T.; Pinello, L.; Bauer, D. E.

10.1101/326504 — bioinformatics — Posted on 2018-05-19

1064 Recurrent loss-of-function mutations reveal costs to OAS1 antiviral activity in primates

Carey, C. M.; Govande, A.; Cooper, J. M.; Hartley, M. K.; Kranzusch, P. J.; Elde, N. C.

10.1101/326454 — genetics — Posted on 2018-05-18

1065 Instant Automated Inference of Perceived Mental Stress through Smartphone PPG and Thermal Imaging

Cho, Y.; Julier, S. J.; Bianchi-Berthouze, N.

10.1101/326157 — physiology — Posted on 2018-05-18

1066 Parallel multimodal circuits control an innate foraging behavior

Lopez-Cruz, A.; Pokala, N.; Sordillo, A.; Flavell, S. W.; McGrath, P. T.; Bargmann, C.

10.1101/326405 — neuroscience — Posted on 2018-05-18

1067 Neural Processing of the Same, Behaviourally Relevant Face Features is Delayed by 40 ms in Healthy Ageing

Jaworska, K.; Yi, F.; Ince, R. A. A.; van Rijsbergen, N. J.; Schyns, P. G.; Rousselet, G. A.

10.1101/326009 — neuroscience — Posted on 2018-05-18

1068 SEREEGA: Simulating Event-Related EEG Activity

Krol, L. R.; Pawlitzki, J.; Lotte, F.; Gramann, K.; Zander, T. O.

10.1101/326066 — neuroscience — Posted on 2018-05-18

1069 Regulated nuclear accumulation of a histone methyltransferase times the onset of heterochromatin formation in C. elegans embryos

Mutlu, B.; Chen, H.-M.; Moresco, J. J.; Orelo, B. D.; Yang, B.; Gaspar, J. M.; Keppler-Ross, S.; Yates, J. R.; Hall, D. H.; Maine, E. M.; Mango, S. E.

10.1101/326231 — developmental biology — Posted on 2018-05-18

1070 Nucleo-cytoplasmic trafficking regulates nuclear surface area during nuclear organogenesis

Boudreau, V.; Hazel, J.; Sellinger, J. K.; Chen, P.; Manakova, K.; Radzyminski, R.; Garcia, H. G.; Allard, J.; Gatlin, J.; Maddox, P. S.

10.1101/326140 — cell biology — Posted on 2018-05-18

1071 RBPMetaDB: A comprehensive annotation of mouse RNA-Seq datasets with perturbations of RNA-binding proteins

Li, J.; Deng, S.-P.; Vieira, J.; Thomas, J.; Costa, V.; Tseng, C.-S.; Ivankovic, F.; Ciccodicola, A.; Yu, P.

10.1101/326116 — bioinformatics — Posted on 2018-05-18

1072 Fundamental Units of Inter-Individual Variation in Resting State Connectomes

Sripada, C.; Angstadt, M.; Rutherford, S.; Kessler, D.; Kim, Y.; Yee, M.; Levina, L.

10.1101/326082 — neuroscience — Posted on 2018-05-18

1073 Candidatus Ornithobacterium hominis sp. nov.: insights gained from draft genomes obtained from nasopharyngeal swabs

Salter, S. J.; Scott, P.; Page, A. J.; Tracey, A.; de Goffau, M. C.; Ochoa-Montano, B.; Ling, C. L.; Tangmanakit, J.; Turner, P.; Parkhill, J.

10.1101/326074 — genomics — Posted on 2018-05-18

1074 The UCSC Xena Platform for cancer genomics data visualization and interpretation

Goldman, M.; Craft, B.; Brooks, A. N.; Zhu, J.; Haussler, D.

10.1101/326470 — cancer biology — Posted on 2018-05-18

1075 Transposable element insertions shape gene regulation and melanin production in a fungal pathogen

Krishnan, P.; Meile, L.; Plissonneau, C.; Ma, X.; Hartmann, F. E.; Croll, D.; McDonald, B. A.; Sanchez Vallet, A.

10.1101/326124 — molecular biology — Posted on 2018-05-18

1076 Horizontal transfer and finalization of a reliable detection method for the olive fruit fly endosymbiont, Candidatus Erwinia dacicola

Bigiotti, G.; Pastorelli, R.; Guidi, R.; Belcari, A.; Sacchetti, P.

10.1101/326090 — microbiology — Posted on 2018-05-18

1077 Structure and consistency of self-reported social contact networks in British secondary schools

Kucharski, A.; Wenham, C.; Brownlee, P.; Racon, L.; Widmer, N.; Eames, K. T.; Conlan, A. J.

10.1101/322271 — epidemiology — Posted on 2018-05-18

1078 Novel immune cell subtypes linked to survival among African American women with triple-negative breast cancer

Purrington, K.; Holowatyj, A. N.; Cote, M. L.; Schwartz, A. G.; Chaudry, R.; Ali-Fehmi, R.; Dyson, G.; Colacino, J.; Boerner, J.; Bandyopadhyay, S.

10.1101/325951 — epidemiology — Posted on 2018-05-18

1079 Genome-wide association analysis identifies 27 novel loci associated with uterine leiomyomata revealing common genetic origins with endometriosis

Gallagher, C. S.; Makinen, N.; Harris, H. R.; Uimari, O.; Cook, J. P.; Shigesi, N.; Rahmioglu, N.; Ferreira, T.; Velez-Edwards, D. R.; Edwards, T. L.; Ruhioglu, Z.; Day, F.; Becker, C. M.; Karhunen, V.; Martikainen, H.; Jarvelin, M.-R.; Cantor, R. M.; Ridker, P. M.; Terry, K. L.; Buring, J. E.; Gordon, S. D.; Medland, S. E.; Montgomery, G. W.; Nyholt, D. R.; Hinds, D. A.; Tung, J. Y.; the 23andMe Research team, ; Perry, J. R. B.; Lind, P. A.; Painter, J. N.; Martin, N. G.; Morris, A. P.; Chasman, D. I.; Missmer, S.; Zondervan, K. T.; Morton, C. C.

10.1101/324905 — genomics — Posted on 2018-05-18

1080 Interpreting Diagnostic Histories into HIV Infection Time Estimates: Framework and Online Tool

Grebe, E.; Facente, S. N.; Bingham, J.; Pilcher, C. D.; Powrie, A.; Gerber, J.; Priede, G.; Chibawara, T.; Busch, M.; Murphy, G.; Kassanjee, R.; Welte, A.

10.1101/323808 — epidemiology — Posted on 2018-05-18

1081 A dynamic power-law sexual network model of gonorrhoea outbreaks

Whittles, L. K.; White, P. J.; Didelot, X.

10.1101/322875 — epidemiology — Posted on 2018-05-18

1082 Coronary artery disease risk and lipidomic profiles are similar in familial and population-ascertained hyperlipidemias

Ramo, J. T.; Ripatti, P.; Tabassum, R.; Soderlund, S.; Matikainen, N.; Gerl, M. J.; Klose, C.; Stitziel, N. O.; Havulinna, A. S.; Salomaa, V.; Freimer, N. B.; Jauhiainen, M.; Palotie, A.; Taskinen, M.-R.; Simons, K.; Ripatti, S.

10.1101/321752 — epidemiology — Posted on 2018-05-18

1083 Dose Escalation for Locally Advanced Pancreatic Cancer: How High Can We Go?

Colbert, L. M.; Rebueno, N.; Monigi, S.; Beddar, S.; Sawakuchi, G.; Herman, J.; Koong, A.; Das, P.; Holliday, E.; Koay, E.; Taniguchi, C. M.

10.1101/324129 — clinical trials — Posted on 2018-05-18

1084 Whole-mouse in vivo bioluminescence imaging applied to drug screening against Leishmania infantum: a reliable method to evaluate efficacy and optimize treatment regimens

Costa, D. M.; Cecilio, P.; Santarem, N.; Cordeiro-da-Silva, A.; Tavares, J.

10.1101/326355 — microbiology — Posted on 2018-05-18

1085 gwasurvivr: an R package for genome wide survival analysis

Rizvi, A. A.; Karaesmen, E.; Morgan, M.; Preus, L.; Wang, J.; Sovic, M.; Sucheston-Campbell, L.

10.1101/326033 — genomics — Posted on 2018-05-18

1086 Inference of epistatic effects in a key mitochondrial protein

Nelson, E. D.; Grishin, N. V.

10.1101/326215 — evolutionary biology — Posted on 2018-05-18

1087 Projecting the end of the Zika virus epidemic in Latin America: a modelling analysis

O'Reilly, K.; Lowe, R.; Edmunds, J.; Mayaud, P.; Kucharski, A.; Eggo, R. M.; Funk, S.; Bhatia, D.; Khan, K.; Kramer, M.; Wilder-Smith, A.; Rodrigues, L.; Brasil, P.; Massad, E.; Jaenisch, T.; Cauchemez, S.; Brady, O.; Yakob, L.

10.1101/323915 — epidemiology — Posted on 2018-05-18

1088 The Roles of Neighborhood Composition and Autism Prevalence on Vaccination Exemption Pockets: A Population-wide Study

Gromis, A.; Liu, K.

10.1101/323451 — epidemiology — Posted on 2018-05-18

1089 Sunbeam: a pipeline for next-generation metagenomic sequencing experiments

Clarke, E.; Taylor, L. J.; Zhao, C.; Connell, A.; Bushman, F. D.; Bittinger, K.

10.1101/326363 — bioinformatics — Posted on 2018-05-18

1090 Finding CRISPR’s Niche: Oxygen and Temperature Shape the Incidence of Adaptive Immunity

Weissman, J. L.; Laljani, R.; Fagan, W. F.; Johnson, P.

10.1101/326330 — microbiology — Posted on 2018-05-18

1091 Finding the signal in the noise of Citizen Science Observations

Kelling, S.; Johnston, A.; Fink, D.; Ruiz-Gutierrez, V.; Bonney, R.; Bonn, A.; Fernandez, M.; Hochachka, W.; Julliard, R.; Kraemer, R.; Guralnick, R.

10.1101/326314 — ecology — Posted on 2018-05-18

1092 Predicting bioprocess targets of chemical compounds through integration of chemical-genetic and genetic interaction networks

Simpkins, S. W.; Nelson, J.; Deshpande, R.; Li, S. C.; Piotrowski, J. S.; Wilson, E. H.; Gebre, A. A.; Okamoto, R.; Yoshimura, M.; Costanzo, M.; Yashiroda, Y.; Ohya, Y.; Osada, H.; Yoshida, M.; Boone, C.; Myers, C. L.

10.1101/111252 — systems biology — Posted on 2018-05-18

1093 Deep learning with EEG spectrograms in rapid eye movement behavior disorder

Ruffini, G.; Ibanez Soria, D.; Dubreuil, L.; Castellano, M.; Gagnon, J.-F.; Montplaisir, J.; Soria-Frisch, A.

10.1101/240267 — neuroscience — Posted on 2018-05-18

1094 Functional Characterization of Enhancer Evolution in the Primate Lineage

Klein, J. C.; Keith, A.; Agarwal, V.; Durham, T.; Shendure, J.

10.1101/283168 — genomics — Posted on 2018-05-18

1095 Genome-wide discovery of epistatic loci affecting antibiotic resistance using evolutionary couplings

Schubert, B.; Maddamsetti, R.; Nyman, J.; Marks, D. S.

10.1101/325993 — genomics — Posted on 2018-05-18

1096 Estimating the Contribution of Proteasomal Spliced Peptides to the HLA-I Ligandome

Mylonas, R.; Beer, I.; Iseli, C.; Chong, C.; Pak, H.; Gfeller, D.; Coukos, G.; Xenarios, I.; Mueller, M.; Bassani-Sternberg, M.

10.1101/288209 — bioinformatics — Posted on 2018-05-18

1097 Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-seq

Cole, M. B.; Risso, D.; Wagner, A.; DeTomaso, D.; Ngai, J.; Purdom, E.; Dudoit, S.; Yosef, N.

10.1101/235382 — genomics — Posted on 2018-05-18

1098 The grayling genome reveals selection on gene expression regulation after whole genome duplication

Varadharajan, S.; Sandve, S. R.; Gillard, G.; Torresen, O. K.; Mulugeta, T.; Hvidsten, T. R.; Lien, S.; Vollestad, L. A.; Jentoft, S.; Nederbragt, A. J.; Jakobsen, K. S.

10.1101/153270 — genomics — Posted on 2018-05-18

1099 Fyn Is Involved In Erythropoietin Signaling Pathway And Interfaces Oxidation To Regulate Erythropoiesis

Beneduce, E.; Matte, A.; de Falco, L.; Mbiandjeu, S.; Chiabrando, D.; Tolosano, E.; Federti, E.; Petrillo, S.; Narla, M.; Siciliano, A.; Babu, W.; Menon, W.; Ghaffari, S.; Iolascon, A.; de Franceschi, L.

10.1101/323873 — cell biology — Posted on 2018-05-18

1100 Glutathione shapes glutamatergic transmission

Koga, M.; Parker, G. M.; Hester, L. D.; Y, T.; Kamiya, A.; Snyder, S. H.; Sawa, A.; Sedlak, T. W.

10.1101/325530 — neuroscience — Posted on 2018-05-18

1101 Expression of WIPI2B counteracts age-related decline in autophagosome biogenesis in neurons

Stavoe, A. K.; Holzbaur, E. L.

10.1101/325449 — neuroscience — Posted on 2018-05-18

1102 Psychological Scaling Reveals a Single Parameter Framework For Visual Working Memory

Schurgin, M. W.; Wixted, J. T.; Brady, T. F.

10.1101/325472 — neuroscience — Posted on 2018-05-18

1103 Genome-wide discovery of epistatic loci affecting antibiotic resistance using evolutionary couplings

Schubert, B.; Maddamsetti, R.; Nyman, J.; Marks, D. S.

10.1101/325993 — genomics — Posted on 2018-05-18

1104 Spatio-temporal regulation of Dachsous proteins expressed during Drosophila development

Revilla Yates, E.; Sierra, J.; Rodriguez, I.

10.1101/325977 — genetics — Posted on 2018-05-18

1105 Evolutionary highways to persistent infection by Pseudomonas aeruginosa

Bartell, J. A.; Sommer, L. M.; Haagensen, J. A.; Loch, A.; Espinosa, R.; Molin, S.; Johansen, H. K.

10.1101/326025 — evolutionary biology — Posted on 2018-05-18

1106 Genetic risk for schizophrenia and developmental delay is associated with shape and microstructure of midline white matter structures

Drakesmith, M.; Parker, G. D.; Smith, J.; Linden, S. C.; Rees, E.; Williams, N.; Owen, M. J.; Hall, J.; Van Den Bree, M.; Jones, D. K.; Linden, D. M.

10.1101/318238 — neuroscience — Posted on 2018-05-18

1107 Functional rerouting via the structural connectome is associated with better recovery after mild TBI

Kuceyeski, A.; Jamison, K. W.; Owen, J.; Raj, A.; Mukherjee, P.

10.1101/320515 — neuroscience — Posted on 2018-05-18

1108 gwasurvivr: an R package for genome wide survival analysis

Rizvi, A. A.; Karaesmen, E.; Morgan, M.; Preus, L.; Wang, J.; Sovic, M.; Sucheston-Campbell, L.

10.1101/326033 — genomics — Posted on 2018-05-18

1109 Pristionchus nematodes occur frequently in diverse rotting vegetal substrates and are not exclusively necromenic, while Panagrellus redivivoides is found specifically in rotting fruits

Felix, M.-A.; Ailion, M.; Hsu, J.-C.; Richaud, A.; Wang, J.

10.1101/324996 — ecology — Posted on 2018-05-18

1110 Poly(ADP-ribose) polymerase 1 Searches DNA via a ‘Monkey Bar’ Mechanism

Rudolph, J.; Mahadevan, J.; Dyer, P. N.; Luger, K.

10.1101/317651 — biophysics — Posted on 2018-05-18

1111 Genome survey of the freshwater mussel Venustaconcha ellipsiformis (Bivalvia: Unionida) using a hybrid de novo assembly approach.

Renaut, S.; Guerra, D.; Hoeh, W.; Stewart, D.; Bogan, A.; Ghiselli, F.; Milani, L.; Passamonti, M.; Breton, S.

10.1101/265157 — genomics — Posted on 2018-05-18

1112 Functional Characterization of Enhancer Evolution in the Primate Lineage

Klein, J. C.; Keith, A.; Agarwal, V.; Durham, T.; Shendure, J.

10.1101/283168 — genomics — Posted on 2018-05-18

1113 In the absence of apoptosis, myeloid cells arrest when deprived of growth factor, but remain viable without ATG5-dependent autophagy or uptake of added glucose or glutamine

Dong, L.; Reljic, B.; Cheung, J. G.; Ng, E. S.; Lindqvist, L. M.; Elefanty, A. G.; Vaux, D. L.; Tran, H.

10.1101/198754 — cell biology — Posted on 2018-05-18

1114 Idiosyncratic, retinotopic bias in face identification modulated by familiarity

Visconti di Oleggio Castello, M.; Taylor, M.; Cavanagh, P.; Gobbini, M. I.

10.1101/253468 — neuroscience — Posted on 2018-05-18

1115 Genetic structure of a patchily distributed philopatric migrant: implications for management and conservation

Bounas, A.; Tsaparis, D.; Efrat, R.; Gradev, G.; Gustin, M.; Mikulic, K.; Rodriguez, A.; Sara, M.; Kotoulas, G.; Sotiropoulos, K.

10.1101/216069 — genetics — Posted on 2018-05-18

1116 Mechanical changes in proteins with large-scale motions highlight the formation of structural locks

Sacquin-Mora, S.

10.1101/221077 — biophysics — Posted on 2018-05-18

1117 Resolving outbreak dynamics using Approximate Bayesian Computation for stochastic birth-death models

Lintusaari, J.; Blomstedt, P.; Sivula, T.; Gutmann, M. U.; Kaski, S.; Corander, J.

10.1101/215533 — bioinformatics — Posted on 2018-05-18

1118 Emergence of binocular disparity selectivity through Hebbian learning

Chauhan, T.; Masquelier, T.; Montlibert, A.; Cottereau, B. R.

10.1101/221283 — neuroscience — Posted on 2018-05-18

1119 An Epiblast Stem Cell derived multipotent progenitor population for axial extension

Edri, S.; Hayward, P.; Baillie-Johnson, P.; Steventon, B.; Martinez Arias, A.

10.1101/242461 — developmental biology — Posted on 2018-05-18

1120 Characterisation of the UK honey bee (Apis mellifera) metagenome.

Regan, T.; Barnett, M. W.; Laetsch, D. R.; Bush, S. J.; Wragg, D.; Budge, G. E.; Highet, F.; Dainat, B.; de Miranda, J. R.; Blaxter, M.; Freeman, T. C.

10.1101/293647 — genomics — Posted on 2018-05-18

1121 The dyslexia susceptibility KIAA0319 gene shows a highly specific expression pattern during zebrafish development supporting a role beyond neuronal migration.

Gostic, M.; Martinelli, A.; Tucker, C.; Yang, Z.; Gasparoli, F.; Ewart, J.-Y.; Dholakia, K.; Sillar, K.; Tello, J.; Paracchini, S.

10.1101/267617 — neuroscience — Posted on 2018-05-18

1122 Psychophysical reverse correlation reflects both sensory and decision-making processes

Okazawa, G.; Sha, L.; Purcell, B. A.; Kiani, R.

10.1101/273680 — neuroscience — Posted on 2018-05-18

1123 Evaluation of redundancy analysis to identify signatures of local adaptation

Capblancq, T.; Luu, K.; Blum, M.; Bazin, E.

10.1101/258988 — genomics — Posted on 2018-05-18

1124 Modeling polypharmacy side effects with graph convolutional networks

Zitnik, M.; Agrawal, M.; Leskovec, J.

10.1101/258814 — bioinformatics — Posted on 2018-05-18

1125 Uncertainty and exploration

Gershman, S. J.

10.1101/265504 — animal behavior and cognition — Posted on 2018-05-18

1126 A Genome-Wide Association Analysis Reveals a Role for Recombination in the Evolution of Antimicrobial Resistance in Burkholderia multivorans

Diaz Caballero, J.; Clark, S. T.; Wang, P. W.; Donaldson, S. L.; Coburn, B.; Tullis, D. E.; Yau, Y. C.; Waters, V. J.; Hwang, D. M.; Guttman, D.

10.1101/313205 — evolutionary biology — Posted on 2018-05-18

1127 Karyotype-environment associations support a role for a chromosomal inversion in local adaptation among North American populations of the seaweed fly Coelopa frigida

Merot, C.; Berdan, E.; Babin, C.; Normandeau, E.; Wellenreuther, M.; Bernatchez, L.

10.1101/278317 — evolutionary biology — Posted on 2018-05-18

1128 Quantitative photoacoustic imaging study of tumours in vivo: baseline variations in quantitative measurements

Martinho Costa, M.; Shah, A.; Rivens, I.; Box, C.; O'Shea, T.; Papaevangelou, E.; Bamber, J.; ter Haar, G.

10.1101/307595 — biophysics — Posted on 2018-05-18

1129 Models that learn how humans learn: the case of decision-making and its disorders

Dezfouli, A.; Griffiths, K.; Ramos, F.; Dayan, P.; Balleine, B. W.

10.1101/285221 — bioinformatics — Posted on 2018-05-18

1130 Complexes of RNA and the antimicrobial peptide, LL37, trigger TLR-mediated cytokine release from psoriasis neutrophils

Herster, F.; Bittner, Z.; Dickhoefer, S.; Eisel, D.; Eigenbrod, T.; Knorpp, T.; Schneiderhan-Marra, N.; Loeffler, M. W.; Hartl, D.; Heiser, M.; Ghoreschi, K.; Weber, A. N. R.

10.1101/324814 — immunology — Posted on 2018-05-18

1131 Bayesian Networks established functional differences between breast cancer subtypes

Trilla-Fuertes, L.; Zapater-Moros, A.; Gamez-Pozo, A.; Arevalillo, J. M.; Prado-Vazquez, G.; Diaz-Almiron, M.; Ferrer-Gomez, M.; Lopez-Vacas, R.; Navarro, H.; Espinosa, E.; Main, P.; Fresno Vara, J. A.

10.1101/319384 — cancer biology — Posted on 2018-05-18

1132 Inferring edge function in protein-protein interaction networks

Esposito, D. C.; Cursons, J.; Davis, M. J.

10.1101/321984 — bioinformatics — Posted on 2018-05-18

1133 Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise.

Schöne, S.; Bothe, M.; Einfeldt, E.; Borschiwer, M.; Benner, P.; Vingron, M.; Thomas-Chollier, M.; Meijsing, S. H.

10.1101/325910 — systems biology — Posted on 2018-05-18

1134 Evaluation of the antimicrobial activity and cytotoxicity of different components of natural origin present in essential oils

Garcia-Salinas, S.; Elizondo, H.; Arruebo, M.; Mendoza, G.; Irusta, S.

10.1101/325639 — microbiology — Posted on 2018-05-18

1135 Social organization and biting performance in Fukomys mole-rats (Bathyergidae, Rodentia)

Van Daele, P. A. A. G.; Desmet, N.; Adriaens, D.

10.1101/325720 — evolutionary biology — Posted on 2018-05-18

1136 Hybridization and postzygotic isolation promote reinforcement of male mating preferences in a diverse group of fishes with traditional sex roles

Moran, R. L.; Zhou, M.; Catchen, J. M.; Fuller, R. C.

10.1101/325498 — evolutionary biology — Posted on 2018-05-18

1137 The phylogenetically distinct early human embryo

Singh, M.; Widmann, T. J.; Cortes, J. L.; Schumann, G. G.; Wunderlich, S.; Martin, U.; Garcia-Perez, J. L.; Hurst, L. D.; Izsvak, Z.

10.1101/318329 — developmental biology — Posted on 2018-05-18

1138 Connecting Patterns of Tumor Growth with Sex Differences in Extreme Survivorship for Primary Glioblastoma Patients

Whitmire, P.; Rickertsen, C. R.; Hawkins-Daarud, A.; Carrasco, E.; Lorence, J.; De Leon, G.; Curtin, L.; Bayless, S.; Clark-Swanson, K.; Peeri, N. C.; Corpuz, C.; Lewis-de los Angeles, C. P.; Bendok, B. R.; Gonzalez-Cuyar, L.; Vora, S.; Mrugala, M.; Hu, L. S.; Wang, L.; Porter, A.; Kumthekar, P.; Johnston, S. K.; Egan, K. M.; Gatenby, R.; Canoll, P.; Rubin, J. B.; Swanson, K. R.

10.1101/325464 — cancer biology — Posted on 2018-05-18

1139 Individual differences in human retinotopic maps revealed by Bayesian analysis of retinotopic organization

Benson, N. C.; Winawer, J.

10.1101/325597 — neuroscience — Posted on 2018-05-18

1140 Isolation and characterization of antagonistic bacteria with the potential for biocontrol of soil-borne wheat diseases

Wang, X.; Wang, C.; Ji, C.; Li, Q.; Zhang, J.; Song, X.; Sui, J.; Liu, Z.; Du, J.; Liu, X.

10.1101/325647 — microbiology — Posted on 2018-05-18

1141 Human enhancers harboring specific sequence composition, activity, and genome organization are linked to the immune response

Lecellier, C.-H.; Wasserman, W. W.; Mathelier, A.

10.1101/078477 — genomics — Posted on 2018-05-18

1142 Reproduction costs can drive the evolution of groups

Pichugin, Y.; Traulsen, A.

10.1101/325670 — evolutionary biology — Posted on 2018-05-18

1143 Wild Steps in a Semi-wild Setting? Habitat Selection and Behavior of European Bison reintroduced to an Anthropogenic Landscape

Pedersen, P. B. M.; Olsen, J. B.; Sandel, B.; Svenning, J.-C.

10.1101/325985 — ecology — Posted on 2018-05-18

1144 In silico screening for ERα downmodulators identifies thioridazine as an anti-proliferative agent in primary, 4OH-tamoxifen-resistant and Y537S ERα-expressing breast cancer cells

Busonero, C.; Leone, S.; Bianchi, F.; Acconcia, F.

10.1101/325746 — cancer biology — Posted on 2018-05-18

1145 Phosphorylation of HspB1 regulates its mechanosensitive molecular chaperone interaction with native filamin C

Collier, M.; Alderson, T. R.; de Villiers, C.; Nicholls, D.; Gastall, H.; Allison, T.; Degiacomi, M.; Fuerst, D.; van de Ven, P.; Djinovic-Carugo, K.; Baldwin, A.; Watkins, H.; Gehmlich, K.; Benesch, J. L.

10.1101/325712 — biophysics — Posted on 2018-05-18

1146 TreeSwift: a massively scalable Python package for trees

Moshiri, N.

10.1101/325522 — bioinformatics — Posted on 2018-05-18

1147 Money or smiles: Independent ERP effects of associated monetary reward and happy faces

Hammerschmidt, W.; Kulke, L.; Broering, C.; Schacht, A.

10.1101/325829 — neuroscience — Posted on 2018-05-18

1148 The entrance pupil of the human eye

Aguirre, G. K.

10.1101/325548 — neuroscience — Posted on 2018-05-18

1149 The spatial correspondence and genetic influence of inter-hemispheric connectivity with white matter microstructure

Mollink, J.; Smith, S. M.; Elliott, L. T.; Kleinnijenhuis, M.; Hiemstra, M.; Alfaro-Almagro, F.; Marchini, J.; van Cappellen van Walsum, A.-M.; Jbabdi, S.; Miller, K. L.

10.1101/325787 — neuroscience — Posted on 2018-05-18

1150 Archetypes in human behavior and their brain correlates: An evolutionary trade-off approach

Cona, G. F.; Kocillari, L.; Palombit, A.; Bertoldo, A.; Maritan, A.; Corbetta, M.

10.1101/325803 — neuroscience — Posted on 2018-05-18

1151 Molecular Detection of H.pylori Antibiotic-Resistant Genes and Bioinformatics Predictive Analysis

Wang, D.; Guo, Q.; Lv, Z.; Yuan, Y.; Gong, Y.

10.1101/325654 — microbiology — Posted on 2018-05-18

1152 Design of a de novo aggregating antimicrobial peptide and bacterial conjugation delivery system

Collins, L.; Otoupal, P. B.; Courtney, C. M.; Chatterjee, A.

10.1101/325621 — microbiology — Posted on 2018-05-18

1153 Granzyme B is an essential mediator in CD8+ T cell killing of Theileria parva-infected cells

Yang, J.; Pemberton, A.; Morrison, W. I.; Connelley, T. K.

10.1101/325662 — immunology — Posted on 2018-05-18

1154 Objectively measured physical activity levels and sedentary time in children and adolescents with sickle cell anemia.

Melo, H. N.; Stoots, S. J.-M.; Pool, M. A.; Carvalho, V. O.; Aragao, M. L. D. C.; Gurgel, R. Q.; Agyemang, C.; Cipolotti, R.

10.1101/325969 — physiology — Posted on 2018-05-18

1155 A robust ex vivo experimental platform for molecular-genetic dissection of adult human neocortical cell types and circuits

Ting, J. T.; Kalmbach, B.; Chong, P.; de Frates, R.; Keene, C. D.; Gwinn, R. P.; Cobbs, C.; Ko, A. L.; Ojemann, J.; Ellenbogen, R.; Koch, C.; Lein, E.

10.1101/325589 — neuroscience — Posted on 2018-05-18

1156 Effects of water decontamination methods and bedding material on the gut microbiota

Bidot, W. A.; Franklin, C. L.; Ericsson, A. C.

10.1101/325878 — microbiology — Posted on 2018-05-18

1157 Development and validation of 58K SNP-array and high-density linkage map in Nile tilapia (O. niloticus)

Joshi, R.; Arnyasi, M.; Lien, S.; Gjoen, H. M.; Alvarez, A. T.; Kent, M.

10.1101/322826 — genomics — Posted on 2018-05-18

1158 New mitochondrial primers for metabarcoding of insects, designed and evaluated using in silico methods

Marquina, D.; Andersson, A. F.; Ronquist, F.

10.1101/325688 — bioinformatics — Posted on 2018-05-18

1159 Renoprotective effects Of Dexmedetomidine against ischemia-reperfusion injury in streptozotocin-induced diabetic rats

Kim, S. H.; Jun, J. H.; Oh, J. E.; Shin, E.-J.; Oh, Y. J.; Choi, Y. S.

10.1101/325894 — pharmacology and toxicology — Posted on 2018-05-18

1160 A novel histone H4 variant regulates rDNA transcription in breast cancer

Long, M.; Sun, X.; Shi, W.; An, Y.; Leung, T. C. S.; Ding, D.; Cheema, M. S.; MacPherson, N.; Nelson, C. J.; Ausio, J.; Yan, Y.; Ishibashi, T.

10.1101/325811 — molecular biology — Posted on 2018-05-18

1161 Quantification of dengue virus specific T cell responses and correlation with viral load and clinical disease severity in acute dengue infection

Wijeratne, D.; Fernando, S.; Gomes, L.; Jeewandara, C.; Ginneliya, A.; Samarasekara, S.; Wijewickrama, A.; Hardman, C. S.; Ogg, G. S.; Malavige, G. N.

10.1101/325944 — immunology — Posted on 2018-05-18

1162 Genetic analysis of Sephardic ancestry in the Iberian Peninsula

Alvarez-Alvarez, M. M.; Risch, N.; Gignoux, C. R.; Huntsman, S.; Ziv, E.; Fejerman, L.; Esteban, M. E.; Gaya-Vidal, M.; Sobrino, B.; Brisighelli, F.; Harich, N.; Cruciani, F.; Chaabani, H.; Carracedo, A.; Moral, P.; Burchard, E. G.; Via, M.; Athanasiadis, G.

10.1101/325779 — genomics — Posted on 2018-05-18

1163 Paired Immunoglobulin-like Type 2 Receptor Alpha G78R variant alters ligand binding and confers protection to Alzheimer’s disease

Rathore, N.; Ramani, S. R.; Pantua, H.; Payandeh, J.; Bhangale, T.; Wuster, A.; Kapoor, M.; Sun, Y.; Kapadia, S.; Gonzalez, L.; Zarrin, A. A.; Goate, A. M.; Hansen, D.; Behrens, T. W.; Graham, R. R.

10.1101/325936 — genetics — Posted on 2018-05-18

1164 RESISTANCE TRAINING DOES NOT INDUCE UNIFORM ADAPTATIONS TO QUADRICEPS MUSCLES

Mangine, G.; Redd, M. J.; Gonzalez, A. M.; Townsend, J. R.; Wells, A. J.; Jajtner, A. R.; Beyer, K. S.; Boone, C. H.; La Monica, M. B.; Stout, J. R.; Fukuda, D. H.; Ratamess, N. A.; Hoffman, J. R.

10.1101/325860 — physiology — Posted on 2018-05-18

1165 Protective effects of low-intensity pulsed ultrasound on mandibular condylar cartilage exposed to mechanical overloading

Fujita, M.; Sato-Shigeta, M.; Mori, H.; Iwasa, A.; Kawai, N.; Hassan, A. H.; Tanaka, E.; Eiji Tanaka,

10.1101/325886 — developmental biology — Posted on 2018-05-18

1166 Antibacterial effects of nanoimprinted moth-eye film in practical settings

Yamada, M.; Minoura, K.; Mizoguchi, T.; Nakamatsu, K.; Taguchi, T.; Kameda, T.; Sekiguchi, M.; Suzutani, T.; Konno, S.

10.1101/325837 — microbiology — Posted on 2018-05-18

1167 Identification of cereulide producing Bacillus cereus by MALDI-TOF MS

Ulrich, S.; Gottschalk, C.; Dietrich, R.; Märtlbauer, E.; Gareis, M.

10.1101/324756 — microbiology — Posted on 2018-05-18

1168 Detection of protein markers for autophagy, autolysis and apoptosis processes in a Saccharomyces cerevisiae wine flor yeast strain when forming biofilm

Moreno-Garcia, J.; Garcia Mauricio, J. C.; Moreno, J.; Garcia-Martinez, T.

10.1101/324772 — microbiology — Posted on 2018-05-18

1169 A non-canonical-PPARγ/RXRα-binding sequence regulates leptin expression in response to changes in adipose tissue mass

Zhang, Y.; Dallner, O. S.; Nakadai, T.; Fayzikhodjaeva, G.; Lu, Y.-H.; Lazar, M. A.; Roeder, R. G.; Friedman, J. M.

10.1101/325480 — physiology — Posted on 2018-05-18

1170 Nuclear polymorphism and non-proliferative adult neurogenesis in human neural crest-derived cells.

Bueno, C.; Martinez-Morga, M.; Martinez, S.

10.1101/325613 — neuroscience — Posted on 2018-05-18

1171 Replication stress induced by CCNE1 overexpression creates a dependency on XRCC2 at the replication fork

Doberstein, K.; Karst, A.; Kroeger, P. T.; Drapkin, R.

10.1101/325563 — molecular biology — Posted on 2018-05-18

1172 RefCell: Multi-dimensional analysis of image-based high-throughput screens based on ‘typical cells’

Shen, Y.; Kubben, N.; Candia, J.; Morozov, A. V.; Misteli, T.; Losert, W.

10.1101/325415 — bioinformatics — Posted on 2018-05-18

1173 Cold Shock Fail to Restrain Pre-formed Bacterial Biofilm

yu, w.; Hao, Q.; Song, X.; Fu, J.; Liu, H.; Guo, Z.; Malakar, P. K.; Pan, Y.; Zhao, Y.

10.1101/324749 — microbiology — Posted on 2018-05-17

1174 Reliable and automatic epilepsy classification with affordable, consumer-grade electroencephalography in rural sub-Saharan Africa

van Hees, V. T.; van Diessen, E.; Sinke, M. R. T.; Buitenhuis, J. W.; van der Maas, F.; Ridder, L.; Otte, W. M.

10.1101/324954 — neuroscience — Posted on 2018-05-17

1175 Microbial life under ice: metagenome diversity and in situ activity of Verrucomicrobia in seasonally ice-covered lakes

Tran, P.; Ramachandran, A.; Khawasik, O.; Beisner, B.; Rautio, M.; Huot, Y.; Walsh, D.

10.1101/324970 — microbiology — Posted on 2018-05-17

1176 Exceptional Solvent Tolerance in Yarrowia lipolytica Is Enhanced by Sterols

Walker, C.; Ryu, S.; Trinh, C. T.

10.1101/324681 — microbiology — Posted on 2018-05-17

1177 Evolution of sex determination and heterogamety changes in section Otites of the genus Silene

Balounova, V.; Gogela, R.; Cegan, R.; Cangren, P.; Zluvova, J.; Safar, J.; Kovacova, V.; Bergero, R.; Hobza, R.; Vyskot, B.; Oxelman, B.; Charlesworth, D.; Janousek, B.

10.1101/325068 — evolutionary biology — Posted on 2018-05-17

1178 Development of algorithms for automated detection of cervical pre-cancers with a low-cost, point-of-care, Pocket Colposcope

Asiedu, M. N.; Simhal, A. K.; Chaudhary, U.; Mueller, J. L.; Lam, C. T.; Schmitt, J. W.; Venegas, G.; Sapiro, G.; Ramanujam, N.

10.1101/324541 — bioinformatics — Posted on 2018-05-17

1179 Integrated RNA-seq and sRNA-seq revealed differences in transcriptome between susceptible and resistant tomato responding to Fusarium oxysporum

Zhao, M.; Ji, H.-M.; Gao, Y.; Cao, X.-X.; Mao, H.-Y.; OUYANG, S.; Liu, P.

10.1101/324574 — molecular biology — Posted on 2018-05-17

1180 4-hydroxyphenylpyruvate dioxygenase thermolability is responsible for temperature-dependent melanogenesis in Aeromonas salmonicida subsP salmonicida

Qiao, Y.; Wang, J.; Wang, H.; Chai, B.; Rao, C.; Chen, X.; Du, S.

10.1101/324731 — molecular biology — Posted on 2018-05-17

1181 Establishment and Application of a duplex real-time qPCR method for detection of Salmonella spp. and Serratia fonticola in imported feedstuffs

Ruan, J.; Wang, W.; Bai, Q. y.; Zhang, T. y.; zheng, T.; Yu, S. y.; Zhang, Z. d.; Su jie Lin, S. j.; Zhong, B.-x.; Yu, D.

10.1101/324798 — microbiology — Posted on 2018-05-17

1182 Consistent and reproducible long-term in vitro growth of health and disease-associated oral subgingival biofilms

Velsko, I. M.; Shaddox, L.

10.1101/324475 — microbiology — Posted on 2018-05-17

1183 Combined effect of matrix quality and spatial heterogeneity on biodiversity decline

Ramos, I.; Gonzalez Gonzalez, C.; Urrutia, A. L.; Mora Van Cauwelaert, E.; Benitez, M.

10.1101/324624 — ecology — Posted on 2018-05-17

1184 DNA-segment-capture model for loop extrusion by structural maintenance of chromosome (SMC) protein complexes

Marko, J. F.; De Los Rios, P.; Barducci, A.; Gruber, S.

10.1101/325373 — biophysics — Posted on 2018-05-17

1185 Quantifying Uncertainty and Robustness in a Biomathematical Model Based Patient-Specific Response Metric for Glioblastoma

Hawkins-Daarud, A.; Johnston, S. K.; Swanson, K. R.

10.1101/325340 — bioinformatics — Posted on 2018-05-17

1186 Diverse incubation rhythms in a facultatively uniparental shorebird -- the Northern Lapwing

Sladecek, M.; Wozabulova, E.; Salek, M.; Bulla, M.

10.1101/324426 — animal behavior and cognition — Posted on 2018-05-17

1187 Anti-inflammatory properties of natural ingredients used in combinations on adjuvant induced arthritis in rats

St-Pierre, A.; Desrosiers, V.; Dufresne, F.; Blier, P.

10.1101/325365 — pharmacology and toxicology — Posted on 2018-05-17

1188 Common Neural Code for Reward and Information Value

Kobayashi, K.; Hsu, M.

10.1101/324665 — neuroscience — Posted on 2018-05-17

1189 Genomic evidence for the degradation of terrestrial organic matter by pelagic Arctic Ocean Chloroflexi bacteria

Colatriano, D.; Tran, P.; Gueguen, C.; Williams, W.; Lovejoy, C.; Walsh, D.

10.1101/325027 — microbiology — Posted on 2018-05-17

1190 Common loci underlie natural variation in diverse toxin responses

Brady, S.; Evans, K.; Bloom, J.; Tanny, R.; Cook, D.; Giuliani, S.; Hippleheuser, S.; Zamanian, M.; Andersen, E.

10.1101/325399 — genetics — Posted on 2018-05-17

1191 Construction, validation and application of nocturnal pollen transport networks in an agro-ecosystem: a comparison using microscopy and DNA metabarcoding

Macgregor, C. J.; Kitson, J. J.; Fox, R.; Hahn, C.; Lunt, D. H.; Pocock, M. J.; Evans, D. M.

10.1101/325084 — ecology — Posted on 2018-05-17

1192 Absolute pitch can be learned by some adults

Van Hedger, S. C.; Heald, S. L. M.; Nusbaum, H. C.

10.1101/325050 — animal behavior and cognition — Posted on 2018-05-17

1193 Single tube bead-based DNA co-barcoding for cost effective and accurate sequencing, haplotyping, and assembly

Wang, O.; Chin, R.; Cheng, X.; Wu, M.; Mao, Q.; Tang, J.; Sun, Y.; Lam, H.; Chen, D.; Zhou, Y.; Wang, L.; Fan, F.; Zou, Y.; Anderson, E.; Xie, Y.; Zhang, R.; Drmanac, S.; Nguyen, D.; Xu, C.; Villarosa, C.; Gablenz, S.; Barua, N.; Nguyen, S.; Tian, W.; Liu, J.; Wang, J.; Liu, X.; Qi, X.; Chen, A.; Wang, H.; Dong, Y.; Zhang, W.; Alexeev, A.; Yang, H.; Wang, J.; Kristiansen, K.; Xu, X.; Drmanac, R.; Peters, B.

10.1101/324392 — genomics — Posted on 2018-05-17

1194 Messenger RNAs transcribed from yeast linear cytoplasmic plasmids possess unconventional 5’ and 3’ UTRs and suggest a novel mechanism of translation

Vopalensky, V.; Sykora, M.; Masek, T.; Pospisek, M.

10.1101/325316 — molecular biology — Posted on 2018-05-17

1195 Otolith microchemistry identifies diadromous populations of Patagonian river fishes

Alo, D.; Correa, C.; Samaniego, H.; Krabbenhoft, C. A.; Turner, T. F.

10.1101/174656 — ecology — Posted on 2018-05-17

1196 The RhoGAP myosin 9/HUM-7 integrates membrane signals to modulate Rho/RHO-1 during embryonic morphogenesis in C. elegans

Wallace, A. G.; Raduwan, H.; Carlet, J.; Soto, M. C.

10.1101/325274 — developmental biology — Posted on 2018-05-17

1197 Transient effect of mossy fiber stimulation on spatial firing of CA3 neurons

Lee, J.; Yun, M.; Cho, E.; Lee, J. W.; Lee, D.; Jung, M. W.

10.1101/324699 — neuroscience — Posted on 2018-05-17

1198 Microscopy quantification of microbial birth and death dynamics

Hart, S. F. M.; Skelding, D.; Waite, A. J.; Burton, J.; Xie, L.; Shou, W.

10.1101/324269 — microbiology — Posted on 2018-05-17

1199 Strain-level overlap between infant and hospital fungal microbiomes revealed through de novo assembly of eukaryotic genomes from metagenomes

Olm, M. R.; West, P. T.; Brooks, B.; Firek, B. A.; Baker, R.; Morowitz, M. J.; Banfield, J. F.

10.1101/324566 — microbiology — Posted on 2018-05-17

1200 Complexes of RNA and the antimicrobial peptide, LL37, trigger TLR-mediated cytokine release from psoriasis neutrophils

Herster, F.; Bittner, Z.; Dickhoefer, S.; Eisel, D.; Eigenbrod, T.; Knorpp, T.; Schneiderhan-Marra, N.; Loeffler, M. W.; Hartl, D.; Heiser, M.; Ghoreschi, K.; Weber, A. N. R.

10.1101/324814 — immunology — Posted on 2018-05-17

1201 Cohesin interacts with a panoply of splicing factors required for cell cycle progression and genomic organization

Kim, J.-S.; He, X.; Liu, J.; Duan, Z.; Kim, T.; Gerard, J.; Kim, B.; Lane, W. S.; Noble, W. S.; Budnik, B.; Waldman, T.

10.1101/325209 — cell biology — Posted on 2018-05-17

1202 On the design of treatment schedules that avoid chemotherapeutic resistance

Newton, P. K.; Ma, Y.

10.1101/325381 — cancer biology — Posted on 2018-05-17

1203 Multi-omic profiling of TKI resistant K562 cells suggests metabolic reprogramming to promote cell survival

Noel, B. M.; Ouellette, S. B.; Marholz, L.; Navis, C.; Yang, T.-Y.; Nguyen, V.; Parker, S. J.; Sachs, Z.; Parker, L. L.

10.1101/308528 — cancer biology — Posted on 2018-05-17

1204 Mammalian stringent-like response mediated by the cytosolic NADPH phosphatase MESH1

Ding, C.-K. C.; Rose, J.; Wu, J.; Sun, T.; Chen, K.-Y.; Chen, P.-H.; Xu, E.; Tian, S.; Akinwuntan, J.; Guan, Z.; Zhou, P.; Chi, J.-T. A.

10.1101/325266 — biochemistry — Posted on 2018-05-17

1205 Splicing and epigenetic factors jointly regulate epidermal differentiation

Tanis, S. E. J.; Jansen, P. W. T.; Zhou, H.; Vermeulen, M.; Mulder, K. W.

10.1101/325332 — systems biology — Posted on 2018-05-17

1206 First natural crossover recombination of intact ORFs between two distinct species of the family Closteroviridae

Ruiz Garcia, L.; Simon, A.; Garcia, C.; Velasco, L.; Janssen, D.

10.1101/325142 — plant biology — Posted on 2018-05-17

1207 The effect of dream report collection and dream incorporation on memory consolidation during sleep

Schoch, S.; Cordi, M. J.; Schredl, M.; Rasch, B.

10.1101/323667 — neuroscience — Posted on 2018-05-17

1208 A novel oceanic uncultured temperate cyanophage lineage

Flores-Uribe, J.; Philosof, A.; Sharon, I.; Beja, O.

10.1101/325100 — microbiology — Posted on 2018-05-17

1209 Deep sequencing of primary human lung epithelial cells challenged with H5N1 influenza virus reveals a proviral role for CEACAM1

Ye, S.; Cowled, C. J.; Yap, C.-H.; Stambas, J.

10.1101/324723 — immunology — Posted on 2018-05-17

1210 Single tube bead-based DNA co-barcoding for cost effective and accurate sequencing, haplotyping, and assembly

10.1101/324392 — genomics — Posted on 2018-05-17

1211 Facial masculinity does not appear to be a condition-dependent male ornament in humans and does not reflect MHC heterozygosity

Zaidi, A. A.; White, J. D.; Mattern, B. C.; Liebowitz, C. R.; Puts, D. A.; Claes, P.; Shriver, M. D.

10.1101/322255 — evolutionary biology — Posted on 2018-05-17

1212 Radiopotentiation of Enzalutamide over Human Prostate Cancer Cells as Assessed by Real-Time Cell Monitoring

Barrado, M.; Blanco-Luquin, I.; Andrea-Navarrete, P.; Visus, I.; Guerrero-Setas, D.; Escors, D.; Kochan, G.; Arias, F.

10.1101/324889 — cancer biology — Posted on 2018-05-17

1213 Japanese Encephalitis Virus Infected Microglial Cells Secrete Exosomes Containing let-7a/b that Facilitate Neuronal Damage via Caspase Activation

Mukherjee, S.; Akbar, I.; Kumari, B.; Vrati, S.; Basu, A.; Banerjee, A.

10.1101/324715 — neuroscience — Posted on 2018-05-17

1214 Microbiome disturbance and resilience dynamics of the upper respiratory tract in response to influenza A virus infection in analog hosts

Kaul, D.; Rathnasinghe, R.; Ferres, M.; Tan, G. S.; Barrera, A.; Pickett, B.; Methe, B.; Das, S.; Budnik, I.; Halpin, R.; Wentworth, D.; Schmolke, M.; Mena, I.; Albrecht, R.; Singh, I.; Nelson, K. E.; Garcia-Sarstre, A.; Dupont, C.; Medina, R.

10.1101/325324 — microbiology — Posted on 2018-05-17

1215 Methionine antagonizes para-aminosalicylic acid activity via affecting folate precursor biosynthesis pathway in Mycobacterium tuberculosis

Howe, M. D.; Kordus, S. L.; Cole, M. S.; Bauman, A. A.; Aldrich, C. C.; Baughn, A. D.; Minato, Y.

10.1101/319038 — microbiology — Posted on 2018-05-17

1216 Sera from individuals with narrowly focused influenza virus antibodies rapidly select viral escape mutations in ovo

Davis, A. K. F.; McCormick, K.; Gumina, M. E.; Petrie, J.; Martin, E. T.; Xue, K. S.; Bloom, J. D.; Monto, A.; Bushman, F.; Hensley, S. E.

10.1101/324707 — microbiology — Posted on 2018-05-17

1217 A novel PCR method directly quantifies sequence features that block primer extension

Cawthon, R. M.

10.1101/325308 — genomics — Posted on 2018-05-17

1218 EWSR1 affects PRDM9-dependent histone 3 methylation and provides a link between recombination hotspots and the chromosome axis

Tian, H.; Billings, T.; Walker, M.; Petkova, P. M.; Baker, C. L.; Petkov, P. M.

10.1101/325282 — developmental biology — Posted on 2018-05-17

1219 starmap: Immersive visualisation of single cell data using smartphone-enabled virtual reality

Yang, A.; Yao, Y.; Li, J.; Ho, J. W.

10.1101/324855 — bioinformatics — Posted on 2018-05-17

1220 S-MiRAGE: A quantitative, secreted RNA-based reporter of gene expression and cell persistence

Mitra, K.; Feist, W. N.; Alfossi, S.; Fuentes-Mattei, E.; Almeida, M. I.; Kim, J. J.; Calin, G. A.; Warmflash, A.

10.1101/325092 — bioengineering — Posted on 2018-05-17

1221 Characterization of novel inhibition of indoleamine 2,3-dioxygenase by targeting its apo form.

Ortiz-Meoz, R. F.; Wang, L.; Matico, R.; Rutkowska, A.; De la Rosa, M.; Bedard, S.; Midgett, R.; Strohmer, K.; Thomson, D.; Zhang, C.; Guss, J.; Totoritis, R.; Consler, T.; Campobasso, N.; Taylor, D.; Lewis, T.; Weaver, K.; Seal, J.; Dunham, R.; Kazmierski, W.; Favre, D.; Bergamini, G.; Shewchuk, L.; Rendina, A.; Zhang, G.

10.1101/324947 — biochemistry — Posted on 2018-05-17

1222 Enhanced inhibition of influenza virus infection by peptide-noble metal nanoparticle conjugates

Alghrair, Z.; Fernig, D. G.; Ebrahimi, B.

10.1101/324939 — biochemistry — Posted on 2018-05-17

1223 Annelid Brain and Nerve Cord in Siboglinid Riftia pachyptila

Rimskaya-Korsakova, N. N.; Galkin, S.; Malakhov, V.

10.1101/325431 — zoology — Posted on 2018-05-17

1224 Agronomic Linked Data (AgroLD): a Knowledge-based System to Enable Integrative Biology in Agronomy

Venkatesan, A.; Tagny Ngompe, G.; Hassouni, N. E.; Chentli, I.; Guignon, V.; Jonquet, C.; Ruiz, M.; Larmande, P.

10.1101/325423 — bioinformatics — Posted on 2018-05-17

1225 Recapitulation of human germline coding variation in an ultra-mutated infant leukemia

Cruickshank, M. N.

10.1101/248690 — cancer biology — Posted on 2018-05-17

1226 An average-case sublinear exact Li and Stephens forward algorithm

Rosen, Y.; Paten, B.

10.1101/322396 — bioinformatics — Posted on 2018-05-17

1227 Cellular Crowding Influences Extrusion and Proliferation to Facilitate Epithelial Tissue Repair

Franco, J. J.; Atieh, Y. M.; Bryan, C. D.; Kwan, K. M.; Eisenhoffer, G. T.

10.1101/324301 — cell biology — Posted on 2018-05-17

1228 The Kinesin-1 binding domain of Ensconsin/MAP7 promotes Kinesin-1 activation in vivo

Metivier, M.; Monroy, B.; Gallaud, E.; Caous, R.; Pascal, A.; Richard-Parpaillon, L.; Guichet, A.; Ori-McKenney, K.; Giet, R.

10.1101/325035 — cell biology — Posted on 2018-05-17

1229 The RHIM within the M45 protein from murine cytomegalovirus forms heteromeric functional amyloid fibrils with RIPK1 and RIPK3

Pham, C. L. L.; Strange, M.; O' Carroll, A.; Shanmugam, N.; Sierecki, E.; Gambin, Y.; Steain, M.; Sunde, M.

10.1101/324590 — biophysics — Posted on 2018-05-17

1230 DsbA is a switchable mechanical chaperone

Haldar, S.; Eckels, E. C.; Echelman, D. J.; Rivas Pardo, J. A.; Fernandez, J. M.

10.1101/310169 — biophysics — Posted on 2018-05-17

1231 Tau monomer encodes strains

Sharma, A. M.; Thomas, T. L.; Woodard, D. R.; Kashmer, O. M.; Diamond, M. I.

10.1101/325043 — biochemistry — Posted on 2018-05-17

1232 Intellectual contributions meriting authorship:Survey results from the top cited authors across all science categories

Patience, G. S.; Galli, F.; Patience, P. A.; Boffito, D. C.

10.1101/323519 — scientific communication and education — Posted on 2018-05-17

1233 Molecular dynamics simulations disclose early stages of the photo-activation of cryptochrome 4

Kattnig, D. R.; Nielsen, C.; Solov'yov, I. A.

10.1101/324962 — biophysics — Posted on 2018-05-17

1234 Modularity of genes involved in local adaptation to climate despite physical linkage

Lotterhos, K.; Yeaman, S.; Degner, J.; Aitken, S.; Hodgins, K.

10.1101/202481 — evolutionary biology — Posted on 2018-05-17

1235 Measuring mosquito-borne viral suitability in Myanmar and implications for local Zika virus transmission

Perez, P. N.; Alcantara, L. C.; Obolski, U.; Maia de Lima, M.; Ashley, E.; Smithuis, F.; Horby, P.; Maude, R. J.; Lourenco, J.

10.1101/231373 — epidemiology — Posted on 2018-05-17

1236 Dropout-based feature selection for scRNASeq

Andrews, T. S.; Hemberg, M.

10.1101/065094 — bioinformatics — Posted on 2018-05-17

1237 Three-dimensional cultured Liver-on-a-Chip with mature hepatocyte-like cells derived from human pluripotent stem cells

Kamei, K.-i.; Yoshioka, M.; Terada, S.; Tokunaga, Y.; Chen, Y.

10.1101/232215 — bioengineering — Posted on 2018-05-17

1238 Mathematical modelling elucidates core mechanisms underpinning GnRH pulse generation

Voliotis, M.; Li, X.-F.; De Burgh, R.; Lass, G.; Lightman, S. L.; O'Byrne, K. T.; Tsaneva-Atanasova, K.

10.1101/245548 — physiology — Posted on 2018-05-17

1239 De novo profile generation based on sequence context specificity with the long short-term memory network

Yamada, K. D.; Kinoshita, K.

10.1101/240515 — bioinformatics — Posted on 2018-05-17

1240 Machine Learning Approach to Predicting Stem-Cell Donor Availability

Sivasankaran, A.; Williams, E.; Albrecht, M.; Switzer, G. E.; Cherkassky, V.; Maiers, M.

10.1101/242719 — bioinformatics — Posted on 2018-05-17

1241 Rbfox1 mediates cell-type-specific splicing in cortical interneurons

Jaglin, X. H.; Wamsley, B.; Favuzzi, E.; Quattracolo, G.; Nigro, M. J.; Yusef, N.; Khodadadi-Jamayran, A.; Rudy, B.; Fishell, G.

10.1101/305904 — neuroscience — Posted on 2018-05-17

1242 Cost of resistance: an unreasonably expensive concept

Lenormand, T.; Harmand, N.; Gallet, R.

10.1101/276675 — evolutionary biology — Posted on 2018-05-17

1243 Generation of tumorigenic porcine pancreatic ductal epithelial cells: toward a large animal model of pancreatic cancer

Remmers, N.; Cox, J. L.; Grunkemeyer, J. A.; Aravind, S.; Arkfeld, C. K.; Hollingsworth, M. A.; Carlson, M.

10.1101/267112 — cancer biology — Posted on 2018-05-17

1244 babette: BEAUti 2, BEAST2 and Tracer for R

Bilderbeek, R. J. C.; Etienne, R. S.

10.1101/271866 — bioinformatics — Posted on 2018-05-17

1245 SPADIS: An Algorithm for Selecting Predictive and Diverse SNPs in GWAS

Yilmaz, S.; Tastan, O.; Cicek, A. E.

10.1101/256677 — bioinformatics — Posted on 2018-05-17

1246 Development of Convolutional Neural Network Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Mouse Development

Tokuoka, Y.; Yamada, T. G.; Hiroi, N.; Kobayashi, T. J.; Yamagata, K.; Funahashi, A.

10.1101/324186 — systems biology — Posted on 2018-05-17

1247 Science podcasts: analysis of global production and output from 2004 to 2018

MacKenzie, L. E.

10.1101/298356 — scientific communication and education — Posted on 2018-05-17

1248 Metagenomic sequencing provides insights into the location of microbial detoxification in the gut of a small mammalian herbivore

Kohl, K. D.; Oakeson, K. F.; Orr, T. J.; Miller, A. W.; Forbey, J. S.; Phillips, C. D.; Dale, C.; Weiss, R. B.; Dearing, M. D.

10.1101/299198 — microbiology — Posted on 2018-05-17

1249 HIV-1 specifically traps CD9 and CD81 tetraspanins within viral buds and induces their membrane depletion

Dahmane, S.; Doucet, C.; Le Gall, A.; Chamontin, C.; Dosset, P.; Murcy, F.; Fernandez, L.; Salas Pastene, D.; Rubinstein, E.; Mougel, M.; Nollmann, M.; Milhiet, P.-E.

10.1101/293860 — microbiology — Posted on 2018-05-17

1250 High-throughput identification and marker development of perfect SSR for cultivated genus of passion fruit (Passiflora edulis)

Wu, Y.; Huang, W.; Huang, Y.; Liu, J.; Tian, Q.; Yang, X.; Xia, X.; Mou, H.

10.1101/322636 — genomics — Posted on 2018-05-17

1251 Neurofibromin is essential to maintain metabolic function and sustain life in the adult mouse

Turner, A. N.; Johnson, M. S.; Brosius, S. N.; Yoder, B. S.; Yang, K.; Yang, Q.; Moore, J. F.; Sharer, J. D.; Smith, D. L.; Nagy, T. R.; Schoeb, T. R.; Korf, B. R.; Kesterson, R. A.

10.1101/324061 — genetics — Posted on 2018-05-17

1252 zetadiv: an R package for computing compositional change across multiple sites, assemblages or cases

Latombe, G.; McGeoch, M. A.; Nipperess, D.; Hui, C.

10.1101/324897 — ecology — Posted on 2018-05-17

1253 Live-cell imaging of marked chromosome regions reveals dynamics of mitotic chromosome resolution and compaction

Eykelenboom, J. K.; Gierlinski, M.; Yue, Z.; Hegarat, N.; Pollard, H.; Fukagawa, T.; Hochegger, H.; Tanaka, T. U.

10.1101/305391 — cell biology — Posted on 2018-05-17

1254 Further expansion of methane metabolism in the Archaea

Wang, Y.; Hua, Z.; Goh, K. M.; Evans, P. N.; Liu, L.; Mao, Y.; Hugenholtz, P.; Tyson, G. W.; Li, W.; Zhang, T.

10.1101/312082 — microbiology — Posted on 2018-05-17

1255 Single cell RNA sequencing reveals a novel, microglia-like cell type in cerebrospinal fluid during virologically suppressed HIV

Farhadian, S.; Mehta, S.; Zografou, C.; Pappalardo, J.; Chiarella, J.; Hafler, D.; Spudich, S.

10.1101/310128 — immunology — Posted on 2018-05-17

1256 Full Bayesian comparative phylogeography from genomic data

Oaks, J. R.

10.1101/324525 — evolutionary biology — Posted on 2018-05-17

1257 Next-generation Sequence-analysis Toolkit (NeST): A standardized bioinformatics framework for analyzing Single Nucleotide Polymorphisms in next-generation sequencing data

Ravishankar, S.; Schmedes, S. E.; Patel, D. S.; Plucinski, M.; Udhayakumar, V.; Talundzic, E.; Vannberg, F.

10.1101/323535 — bioinformatics — Posted on 2018-05-17

1258 Analyzing Enzyme Kinetic Data Using the Powerful Statistical Capabilities of R

Huitema, C.; Horsman, G. P.

10.1101/316588 — biochemistry — Posted on 2018-05-17

1259 Repression of divergent noncoding transcription by a sequence-specific transcription factor

Wu, A. C.; Patel, H.; Chia, M.; Moretto, F.; Frith, D.; Snijders, A. P.; van Werven, F. J.

10.1101/314310 — molecular biology — Posted on 2018-05-17

1260 Discovery of a Streptococcus pneumoniae serotype 33F capsular polysaccharide locus that lacks wcjE and contains a wcyO pseudogene

Manna, S.; Dunne, E. M.; Ortika, B. D.; Pell, C. L.; Kama, M.; Russell, F. M.; Mungun, T.; Mulholland, E. K.; Hinds, J.; Satzke, C.

10.1101/308767 — microbiology — Posted on 2018-05-17

1261 Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes

Johnson, L. K.; Alexander, H.; Brown, C. T.

10.1101/323576 — bioinformatics — Posted on 2018-05-17

1262 Unprecedented Account of Mortality and Morbidity in Free Ranging Formosan Pangolin (Manis pentadactyla pentadactyla)

Sun, N. C.; Arora, B.; Lin, J.-S.; Lin, W.-C.; Chi, M.-J.; Chen, C.-C.; Pei, K. J.-C.

10.1101/325167 — ecology — Posted on 2018-05-17

1263 Attentional Bias Modification Alters fMRI Response towards Negative Stimuli in Residual Depression

Hilland, E.; Landro, N. I.; Harmer, C.; Browning, M.; Maglanoc, L. A.; Jonassen, R.

10.1101/322842 — clinical trials — Posted on 2018-05-17

1264 The Influence of PTH 1-34 on the Osteogenic Characteristics of Adipose and Bone Marrow Derived Stem Cells from Juvenile and Ovarectomized Rats

osagie clouard, l.; sanghani kerai, a.; coathup, m.; pendegrass, c.; BRIGGS, T.; BLUNN, G.

10.1101/325134 — cell biology — Posted on 2018-05-17

1265 The effectiveness of clove oil and cautery disbudding methods on preventing horn growth in dairy goat kids

Hempstead, M. N.; Waas, J. R.; Stewart, M.; Cave, V. M.; Turner, A. R.; Sutherland, M. A.

10.1101/325159 — animal behavior and cognition — Posted on 2018-05-17

1266 Hormonal signaling cascades required for phototaxis switch in wandering Leptinotarsa decemlineata larvae

Meng, Q.-W.; Xu, Q.-Y.; Zhu, T.-T.; Jin, L.; Fu, K.-Y.; Guo, W.-C.; Li, G.-Q.

10.1101/325233 — animal behavior and cognition — Posted on 2018-05-17

1267 Theaflavins, polyphenols of black tea, inhibit entry of hepatitis C virus

Chowdhury, P.; Sahuc, M.-E.; Rouille, Y.; Vandeputte, A.; Brodin, P.; Goswami, M.; Bandyopadhyay, T.; Dubuisson, J.; Seron, K.

10.1101/325126 — microbiology — Posted on 2018-05-17

1268 Illumina sequencing analysis of the ruminal microbiota in high-yield and low-yield lactating dairy cows

Tong, J.; Zhang, H.; Yang, D.; Jiang, L.; Xiong, B.

10.1101/325118 — microbiology — Posted on 2018-05-17

1269 Discovery of microRNA-like RNAs during early fruiting body development in the model mushroom Coprinopsis cinerea

Lau, A. Y.-T.; Cheng, X.; Cheng, C. K.; Nong, W.; Cheung, M. K.; Chan, R. H.-F.; Hui, J. H. L.; Kwan, H. S.

10.1101/325217 — genetics — Posted on 2018-05-17

1270 Type 1 diabetes mellitus-associated genetic variants contribute to overlapping immune regulatory networks

Nyaga, D. M.; Vickers, M. H.; Jefferies, C.; Perry, J. K.; O'Sullivan, J. M.

10.1101/325225 — genetics — Posted on 2018-05-17

1271 Planning a future randomized clinical trial based on a network of relevant past trials

Salanti, G.; Nikolakopoulou, A.; Sutton, A. J.; Reichenbach, S.; Trelle, S.; Naci, H.; Egger, M.

10.1101/324871 — epidemiology — Posted on 2018-05-17

1272 Sedimentation and soil carbon accumulation in degraded mangrove forests of North Sumatra, Indonesia

Murdiyarso, D.; Hanggara, B. B.; Lubis, A. A.

10.1101/325191 — ecology — Posted on 2018-05-17

1273 Radiographic evaluation of subcutaneously injected, water-soluble, iodinated contrast for lymphography in dogs

Lee, C.; Matz, B. M.; Cole, R. C.; Boothe, H. W.; Tillson, D. M.

10.1101/325183 — zoology — Posted on 2018-05-17

1274 Molecular analysis of long non-coding RNA GAS5 and microRNA-34a expression signature in common solid tumors: A pilot study

Toraih, E. A.; Alghamdi, S. A.; El-Wazir, A.; Hosny, M. H.; Hussein, M. H.; Khashana, M. S.; Fawzy, M. S.

10.1101/325175 — molecular biology — Posted on 2018-05-17

1275 Phenotype-specific enrichment of Mendelian disorder genes near GWAS regions across 62 complex traits

Freund, M. K.; Burch, K.; Shi, H.; Mancuso, N.; Kichaev, G.; Garske, K. M.; Pan, D. Z.; Pajukanta, P.; Pasaniuc, B.; Arboleda, V. A.

10.1101/324558 — genetics — Posted on 2018-05-17

1276 Generation of the squamous epithelial roof of the 4th ventricle

Campo-Paysaa, F.; Clarke, J. D. W.; Wingate, R. J. T.

10.1101/324608 — developmental biology — Posted on 2018-05-17

1277 Presence of midline cilia supersedes the expression of Lefty1 in forming the midline barrier during the establishment of left-right asymmetry

Shylo, N. A.; Ramrattan, D. A.; Weatherbee, S. D.

10.1101/324533 — developmental biology — Posted on 2018-05-17

1278 Multi-scale coordination of planar cell polarity in planarians

Vu, H. T.-K.; Mansour, S.; Kuecken, M.; Blasse, C.; Basquin, C.; Azimzadeh, J.; Myers, E. W.; Brusch, L.; Rink, J. C.

10.1101/324822 — cell biology — Posted on 2018-05-17

1279 Hypertrophic cardiomyopathy disease results from disparate impairments of cardiac myosin function and auto-inhibition

Robert-Paganin, J.; Auguin, D.; Houdusse, A.

10.1101/324830 — biophysics — Posted on 2018-05-17

1280 Simultaneous in vivo time-lapse stiffness mapping and fluorescence imaging of developing tissue

Thompson, A. J.; Pillai, E. K.; Dimov, I. B.; Holt, C. E.; Franze, K.

10.1101/323501 — developmental biology — Posted on 2018-05-17

1281 New interfaces on MiD51 for Drp1 recruitment and regulation

Ma, J.; Zhai, Y.; Chen, M.; Zhang, K.; Chen, Q.; Pang, X.; Sun, F.

10.1101/324616 — biophysics — Posted on 2018-05-17

1282 Cis-nonPro Peptides: Genuine Occurrences and their Functional Roles

Williams, C. J.; Videau, L. L.; Hintze, B. J.; Richardson, D. C.; Richardson, J. S.

10.1101/324517 — biochemistry — Posted on 2018-05-17

1283 Archaeal, bacterial, and eukaryal microbial community structure of sediment and seawater in a coastal region near Puerto Nuevo, Baja California

Ul-Hasan, S.; Bowers, R. M.; Figueroa-Montiel, A.; Licea, A. F.; Beman, J. M.; Woyke, T.; Nobile, C. J.

10.1101/324442 — microbiology — Posted on 2018-05-17

1284 The Pseudomonas aeruginosa PilSR two-component system regulates both twitching and swimming motilities

Kilmury, S. L. N.; Burrows, L. L.

10.1101/323923 — microbiology — Posted on 2018-05-17

1285 Human Als3p Antibodies are Surrogate Markers of NDV-3A Vaccine Efficacy Against Recurrent Vulvovaginal Candidiasis

Uppuluri, P.; Singh, S.; Alqarihi, A.; Schmidt, C. S.; Hennessey, J. P.; Yeaman, M. R.; Filler, S.; Edwards, J. E.; Ibrahim, A. S.

10.1101/324483 — immunology — Posted on 2018-05-17

1286 Specifying a causal role for angular gyrus in autobiographical memory

Bonnici, H.; Cheke, L.; Green, D.; FitzGerald, T.; Simons, J.

10.1101/323733 — neuroscience — Posted on 2018-05-16

1287 High impact journals in ecology cover proportionally more statistically significant findings

Ceausu, S.; Borda-de-Agua, L.; Merckx, T.; Sossai, E.; Sapage, M.; Miranda, M.; Pereira, H. M.

10.1101/311068 — scientific communication and education — Posted on 2018-05-03

1288 Genome analyses show strong selection on coloration, morphological and behavioral phenotypes in birds-of-paradise

Prost, S.; Armstrong, E. E.; Nylander, J.; Thomas, G. W. C.; Suh, A.; Petersen, B.; Dalen, L.; Benz, B.; Blom, M. P. K.; Palkopoulou, E.; Ericson, P. G. P.; Irestedt, M.

10.1101/287086 — genomics — Posted on 2018-05-16

1289 Deconvolution of Transcriptional Networks Identifies TCF4 as a Master Regulator in Schizophrenia

Doostparast Torshizi, A.; Armoskus, C.; Zhang, S.; Zhang, H.; Souaiaia, T.; Forrest, M. P.; Evgrafov, O. V.; Knowles, J. A.; Duan, J.; Wang, K.

10.1101/133363 — neuroscience — Posted on 2018-05-16

1290 Next-generation Sequence-analysis Toolkit (NeST): A standardized bioinformatics framework for analyzing Single Nucleotide Polymorphisms in next-generation sequencing data

Ravishankar, S.; Schmedes, S. E.; Patel, D. S.; Plucinski, M.; Talundzic, E.; Udhayakumar, V.; Vannberg, F.

10.1101/323535 — bioinformatics — Posted on 2018-05-16

1291 Supercharging enables organized assembly of synthetic biomolecules

Simon, A. J.; Ramasubramani, V.; Glaser, J.; Pothukuchy, A.; Gerberich, J.; Leggere, J.; Morrow, B. R.; Golihar, J.; Jung, C.; Glotzer, S. C.; Taylor, D. W.; Ellington, A. D.

10.1101/323261 — bioengineering — Posted on 2018-05-16

1292 Monocyte and Macrophage Subtypes as Paired Cell Biomarkers for Coronary Artery Disease

Arnold, K. A.; Blair, J. E.; Paul, J. D.; Shah, A. P.; Nathan, S.; Alenghat, F.

10.1101/323287 — physiology — Posted on 2018-05-16

1293 Rapid Pliocene Diversification of Modern Kangaroos

Couzens, A.; Prideaux, G.

10.1101/323717 — paleontology — Posted on 2018-05-16

1294 Entrainment of circadian rhythms depends on firing rates and neuropeptide release of VIP SCN neurons

Mazuski, C.; Abel, J. H.; Chen, S. P.; Hermanstyne, T. O.; Jones, J. R.; Simon, T.; Doyle, F. J.; Herzog, E. D.

10.1101/322339 — neuroscience — Posted on 2018-05-16

1295 Engineered Genetic Redundancy Relaxes Selective Constraints upon Endogenous Genes in Viral RNA Genomes

Ambros, S.; De la Iglesia, F.; Rosario, S. M.; Butkovic, A.; Elena, S. F.

10.1101/323329 — evolutionary biology — Posted on 2018-05-16

1296 Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants

Tsyvina, V.; Campo, D. S.; Sims, S.; Zelikovsky, A.; Khudyakov, Y.; Skums, P.

10.1101/324418 — bioinformatics — Posted on 2018-05-16

1297 Short-term plasticity of 7T BOLD ocular dominance and spatial frequency representation in adult human primary visual cortex

Binda, P.; Kurzawski, J. W.; Lunghi, C.; Biagi, L.; Tosetti, M.; Morrone, M. C.

10.1101/323741 — neuroscience — Posted on 2018-05-16

1298 Countries’ geographic latitude and their human populations’ cholesterol and blood pressure

Liu, Y.; Brook, R. D.; Liu, X.; Byrd, J. B.

10.1101/308726 — epidemiology — Posted on 2018-05-16

1299 Dorsal Ruffles Enhance Activation of Akt by Growth Factors

Yoshida, S.; Pacitto, R.; Sesi, C.; Kotula, L.; Swanson, J.

10.1101/324434 — cell biology — Posted on 2018-05-16

1300 GRIMM: GRaph IMputation and Matching for HLA Genotypes

Maiers, M.; Halagan, M.; Gragert, L.; Bashyal, P.; Schneider, J.; Lutsker, P.; Louzoun, Y.

10.1101/323493 — bioinformatics — Posted on 2018-05-16

1301 CardiacProfileR: An R package for extraction and visualisation of heart rate profiles from wearable fitness trackers

Djordjevic, D.; Cawood, B. K.; Rispin, S. K.; Yim, L. H. H.; Hayward, C. S.; Ho, J. W. K.

10.1101/324004 — bioinformatics — Posted on 2018-05-16

1302 A segmentation scheme for complex neuronal arbors and application to vibration sensitive neurons in the honeybee brain

Ikeno, H.; Kumaraswamy, A.; Kai, K.; Wachtler, T.; Ai, H.

10.1101/323758 — bioinformatics — Posted on 2018-05-16

1303 Gold Nanoprisms as Optical Coherence Tomography Contrast Agents in the Second Near Infrared Window for Enhanced Angiography in Live Animals

Si, P.; Yuan, E.; Liba, O.; Winetraub, Y.; Yousefi, S.; SoRelle, E.; Yecies, D.; Dutta, R.; de la Zerda, A.

10.1101/322545 — bioengineering — Posted on 2018-05-16

1304 Transient Overexpression of VEGF-A in Adipose Tissue Promotes Energy Expenditure via Activation of the Sympathetic Nervous System

Zhao, Y.; Li, X.; Yang, L.; Eckel-Mahan, K.; Tong, Q.; Gu, X.; Kolonin, M. G.; Sun, K.

10.1101/323659 — physiology — Posted on 2018-05-16

1305 Engagement of pulvino-cortical feedforward and feedback pathways in cognitive computations

Jaramillo, J.; Mejias, J. F.; Wang, X.-J.

10.1101/322560 — neuroscience — Posted on 2018-05-16

1306 Organized spatial patterns of activated β2 integrins in arresting neutrophils

Fan, Z.; Kiosses, W. B.; Zajonc, D. M.; Arnaout, M. A.; Gutierrez, E.; Groisman, A.; Ley, K.

10.1101/323279 — immunology — Posted on 2018-05-16

1307 High-throughput identification and marker development of perfect SSR for cultivated genus of passion fruit (Passiflora edulis)

Wu, Y.; Huang, W.; Huang, Y.; Liu, J.; Tian, Q.; Yang, X.; Xia, X.; Mou, H.

10.1101/322636 — genomics — Posted on 2018-05-16

1308 The return of the trophic chain: fundamental vs realized interactions in a simple arthropod food web

Torres-Campos, I.; Magalhaes, S.; Moya-Larano, J.; Montserrat, M.

10.1101/324178 — ecology — Posted on 2018-05-16

1309 Localization and protein-protein interaction of protein kinase CK2 suggest a chaperone-like activity is integral to its function in M. oryzae.

Zhang, L.; Zhang, D.; Chen, Y.; Ye, W.; Lin, Q.; Lu, G.; Ebbole, D. J.; Olsson, S.; Wang, Z.

10.1101/323816 — cell biology — Posted on 2018-05-16

1310 ALPHLARD: a Bayesian method for analyzing HLA genes from whole genome sequence data

Hayashi, S.; Yamaguchi, R.; Mizuno, S.; Komura, M.; Miyano, S.; Nakagawa, H.; Imoto, S.

10.1101/323766 — bioinformatics — Posted on 2018-05-16

1311 scQuery: a web server for comparative analysis of single-cell RNA-seq data

Alavi, A.; Ruffalo, M.; Parvangada, A.; Huang, Z.; Bar-Joseph, Z.

10.1101/323238 — bioinformatics — Posted on 2018-05-16

1312 Disproportionate feedback interactions govern cell-type specific proliferation in mammalian cells

Sengupta, D.; Kompella, V. P. S.; Kar, S.

10.1101/323147 — systems biology — Posted on 2018-05-16

1313 Quasi-periodic patterns contribute to functional connectivity in the brain

Abbas, A.; Belloy, M.; Kashyap, A.; Billings, J.; Nezafati, M.; Keilholz, S.

10.1101/323162 — neuroscience — Posted on 2018-05-16

Kalichamy, K.; Ikkala, K.; Porsti, J.; Santio, N. M.; Jha, S.; Holmberg, C. I.; Koskinen, P. J.

10.1101/324046 — neuroscience — Posted on 2018-05-16

1315 Prefrontal co-expression of schizophrenia risk genes is associated with treatment response in patients

Pergola, G.; Di Carlo, P.; Jaffe, A. E.; Papalino, M.; Chen, Q.; Hyde, T. M.; Kleinman, J. E.; Shin, J. H.; Rampino, A.; Blasi, G.; Weinberger, D. R.; Bertolino, A.

10.1101/323428 — neuroscience — Posted on 2018-05-16

1316 Hierarchical modulation of auditory prediction error signaling is independent of attention

Kompus, K.; Volehaugen, V.; Westerhausen, R.

10.1101/324467 — neuroscience — Posted on 2018-05-16

1317 Accurate autocorrelation modeling substantially improves fMRI reliability

Olszowy, W.; Aston, J.; Rua, C.; Williams, G. B.

10.1101/323154 — neuroscience — Posted on 2018-05-16

1318 Diversity of coelomycetous fungi in human infections: a 10-year experience of two European reference centres

Garcia-Hermoso, D.; Valenzuela-Lopez, N.; Rivero-Menendez, O.; Alastruey-Izquierdo, A.; Guarro, J.; Cano-Lira, J.; STCHIGEL, A. M.

10.1101/323618 — microbiology — Posted on 2018-05-16

1319 Effects on cell viability, growth and morphology of C. albicans SC5314 biofilms after kINPen(R)09 plasma treatment

Handorf, O.; Weihe, T.; Bekeschus, S.; Graf, A. C.; Schnabel, U.; Riedel, K.; Ehlbeck, J.

10.1101/323600 — microbiology — Posted on 2018-05-16

1320 Autolysin-Independent DNA Release in Streptococcus pneumoniae in vitro Biofilms

Domenech, M.; Garcia, E.

10.1101/322818 — microbiology — Posted on 2018-05-16

1321 Using High Throughput DNA Sequencing to Evaluate the Accuracy of Serial Dilution Based Tests of Microbial Activities in Oil Pipelines

Khanipov, K.; Golovko, G.; Rojas, M.; Pimenova, M.; Albayrak, L.; Chumakov, S.; Duarte, R.; Widger, W.; Pickthall, T.; Fofanov, Y.

10.1101/323139 — microbiology — Posted on 2018-05-16

1322 Hyd ubiquitinates the NF-κB co-factor Akirin to activate an effective immune response in Drosophila

Cammarata-Mouchtouris, A.; Nguyen, X.-H.; Goto, A.; Orian, A.; Bonnay, F.; Fauvarque, M.-O.; Reichhart, J.-M.; Matt, N.

10.1101/323170 — immunology — Posted on 2018-05-16

1323 Three-photon light-sheet fluorescence microscopy

Escobet-Montalban, A.; Liu, P.; Nylk, J.; Gasparoli, F. M.; Yang, Z.; Dholakia, K.

10.1101/323790 — cell biology — Posted on 2018-05-16

1324 Cryptsim: Modeling the evolutionary dynamics of the progression of Barrett’s esophagus to esophageal adenocarcinoma

Mallo, D.; Kostadinov, R.; Cisneros, L.; Kuhner, M. K.; Maley, C. C.

10.1101/323485 — cancer biology — Posted on 2018-05-16

1325 Structural basis for transcript elongation control by NusG/RfaH universal regulators

Kang, J. Y.; Mooney, R. A.; Nedialkov, Y.; Saba, J.; Mishanina, T. V.; Artsimovitch, I.; Landick, R.; Darst, S.

10.1101/324400 — biophysics — Posted on 2018-05-16

1326 Nitrone-Trolox conjugate as an inhibitor of lipid oxidation: Towards synergistic antioxidant effects

Morandat, S.; Trouillas, P.; Socrier, L.; Durand, G.; Rosselin, M.; Gomez Giraldo, A. M.; Chantemargue, B.; Di Meo, F.

10.1101/323386 — biophysics — Posted on 2018-05-16

1327 Phenotero: annotate as you write

Hombach, D.; Schwarz, J. M.; Knierim, E.; Schuelke, M.; Seelow, D.; Koehler, S.

10.1101/324053 — bioinformatics — Posted on 2018-05-16

1328 High Temporal-Resolution Dynamic PET Image Reconstruction Using A New Spatiotemporal Kernel Method

Wang, G.

10.1101/323394 — bioengineering — Posted on 2018-05-16

1329 A metal-regulated AMPylation/deAMPylation switch in FIC proteins

Veyron, S.; Oliva, G.; Rolando, M.; Buchrieser, C.; Peyroche, G.; Cherfils, J.

10.1101/323253 — biochemistry — Posted on 2018-05-16

1330 An Atomistic view of Short-chain Antimicrobial Biomimetic peptides in Action

Mondal, J.; Ghosh, P.; Zhu, X.

10.1101/323592 — biochemistry — Posted on 2018-05-16

1331 Structure of the Human Volume Regulated Anion Channel

Kefauver, J. M.; Saotome, K.; Dubin, A. E.; Pallesen, J.; Cottrell, C. A.; Hong, G.; Cahalan, S. M.; Qiu, Z.; Crowley, C. S.; Whitwam, T.; Lee, W.-H.; Ward, A. B.; Patapoutian, A.

10.1101/323584 — biochemistry — Posted on 2018-05-16

1332 Integration of cell cycle signals by multi-PAS domain kinases

Mann, T. H.; Shapiro, L.

10.1101/323444 — biochemistry — Posted on 2018-05-16

1333 Analyzing Enzyme Kinetic Data Using the Powerful Statistical Capabilities of R

Huitema, C.; Horsman, G. P.

10.1101/316588 — biochemistry — Posted on 2018-05-16

1334 A computational model to understand mouse iron physiology and diseases

Parmar, J. H.; Mendes, P.

10.1101/323899 — systems biology — Posted on 2018-05-16

1335 Speed of time-compressed forward replay flexibly changes in human episodic memory

Michelmann, S.; Staresina, B. P.; Bowman, H.; Hanslmayr, S.

10.1101/323774 — neuroscience — Posted on 2018-05-16

1336 Decoding Selective Attention to Context Memory: An Aging Study

Powell, P. S.; Strunk, J.; James, T.; Polyn, S.; Duarte, A.

10.1101/324384 — neuroscience — Posted on 2018-05-16

1337 Win-concurrent sensory cues can bias decision making towards less favourable odds

Cherkasova, M. V.; Clark, L.; Barton, J. J.; Schulzer, M.; Shafiee, M.; Kingstone, A.; Stoessl, A. J.; Winstanley, C. A.

10.1101/323345 — neuroscience — Posted on 2018-05-16

1338 In vitro neural networks minimise variational free energy

Isomura, T.; Friston, K.

10.1101/323550 — neuroscience — Posted on 2018-05-16

1339 NOVEL INSIGHTS INTO SELECTION FOR ANTIBIOTIC RESISTANCE IN COMPLEX MICROBIAL COMMUNITIES

Murray, A.; Zhang, L.; Yin, X.; Zhang, T.; Buckling, A.; Snape, J.; Gaze, W.

10.1101/323634 — microbiology — Posted on 2018-05-16

1340 Alanine scanning mutagenesis of the Suvratoxumab epitope reduces alpha toxin lytic activity in vitro and S. aureus fitness in infection models

Tkaczyk, C.; Semenova, E.; Shi, Y.; Rosenthal, K.; Oganesyan, V.; Warrener, P.; Stover, K.; Sellman, B. R.

10.1101/323642 — microbiology — Posted on 2018-05-16

1341 Assessing the Gene-Disease Association of 19 Genes with the RASopathies using the ClinGen Gene Curation Framework

Grant, A.; Cushman, B.; Cave, H.; Dillon, M. W.; Gelb, B. D.; Gripp, K. W.; Lee, J. A.; Mason-Suares, H.; Rauen, K. A.; Vincent, L. M.; Zenker, M.

10.1101/323303 — genetics — Posted on 2018-05-16

1342 Vector-mediated viral transmission favours less virulent viruses

Remnant, E. J.; Mather, N.; Gillard, T. L.; Yagound, B.; Beekman, M.

10.1101/323527 — evolutionary biology — Posted on 2018-05-16

1343 Parasite intensity is driven by temperature in a wild passerine bird

Mennerat, A.; Charmantier, A.; Perret, P.; HURTREZ-BOUSSES, S.; Lambrechts, M. M.

10.1101/323311 — ecology — Posted on 2018-05-16

1344 Bone Morphology is Regulated Modularly by Global and Regional Genetic Programs

Eyal, S.; Kult, S.; Rubin, S.; Krief, S.; Pineault, K. M.; Wellik, D.; Zelzer, E.

10.1101/324293 — developmental biology — Posted on 2018-05-16

1345 Using neural networks to bridge scales in cancer: Mapping signaling pathways to phenotypes

Kim, E.; Gerlee, P.; Anderson, A.

10.1101/324038 — cancer biology — Posted on 2018-05-16

1346 Exposons exploit cooperative changes in solvent exposure to detect cryptic allosteric sites and other functionally-relevant conformational transitions

Porter, J. R.; Moeder, K. E.; Sibbald, C. A.; Zimmerman, M. I.; Hart, K. M.; Greenberg, M. J.; Bowman, G. R.

10.1101/323568 — biophysics — Posted on 2018-05-16

1347 TERribly Difficult: Searching for Telomerase RNAs in Saccharomycetes

Waldl, M.; Thiel, B. C.; Ochsenreiter, R.; Holzenleiter, A.; de Araujo Oliveira, J. V.; Walter, M. E. M. T.; Wolfinger, M. T.; Stadler, P. F.

10.1101/323675 — bioinformatics — Posted on 2018-05-16

1348 Construction and analysis of mRNA, miRNA, lncRNA, and TF regulatory networks reveal the key genes in prostate cancer

Li, S.-L.; Ye, Y.; Wang, S.-Y.

10.1101/323543 — bioinformatics — Posted on 2018-05-16

1349 Achilles tendon structure in distance runners does not change following a competitive season

Hullfish, T. J.; Hagan, K. L.; Casey, E.; Baxter, J. R.

10.1101/324020 — bioengineering — Posted on 2018-05-16

1350 Data-driven modeling of cholinergic modulation of neural microcircuits: bridging neurons, synapses, and network states

Ramaswamy, S.; Markram, H.

10.1101/323865 — neuroscience — Posted on 2018-05-16

1351 Cell type specific profiling of alternative translation identifies novel protein isoforms in the mouse brain

Sapkota, D.; Lake, A. M.; Yang, W.; Yang, C.; Wesseling, H.; Guise, A.; Uncu, C.; Dalal, J. S.; Kraft, A.; Lee, J.-M.; Sands, M. S.; Steen, J. A.; Dougherty, J. D.

10.1101/324236 — neuroscience — Posted on 2018-05-16

1352 Serotonin and neuropeptides are both released by the HSN command neuron to initiate C. elegans egg laying

Brewer, J.; Collins, K.; Koelle, M.

10.1101/323857 — neuroscience — Posted on 2018-05-16

1353 T Cell Activation Triggers Reversible Inosine-5’-Monophosphate Dehydrogenase Assembly

Duong-Ly, K.; Kuo, Y.-M.; Johnson, M. C.; Kollman, J.; Soboloff, J.; Rall, G.; Andrews, A.; Peterson, J.

10.1101/315929 — immunology — Posted on 2018-05-16

1354 BiFET: A Bias-free Transcription Factor Footprint Enrichment Test

Youn, A.; Marquez, E. J.; Lawlor, N.; Stitzel, M. L.; Ucar, D.

10.1101/324277 — genomics — Posted on 2018-05-16

1355 The genetic architecture of target-site resistance to pyrethroid insecticides in the African malaria vectors Anopheles gambiae and Anopheles coluzzii

Clarkson, C. S.; Miles, A.; Harding, N. J.; Weetman, D.; Kwiatkowski, D.; Donnelly, M.; The Anopheles gambiae 1000 Genomes Consortium,

10.1101/323980 — genomics — Posted on 2018-05-16

1356 K-Ras G-domain binding with signaling lipid phosphoinositides: PIP2 association, orientation, function

Cao, S.; Chung, S.; Kim, S.; Li, Z.; Manor, D.; Buck, M.

10.1101/324210 — biophysics — Posted on 2018-05-16

1357 The Carcinogenome Project: In-vitro Gene Expression Profiling of Chemical Perturbations to Predict Long-Term Carcinogenicity

Li, A.; Lu, X.; Natoli, T.; Bittker, J.; Sipes, N.; Subramanian, A.; Auerbach, S.; Sherr, D.; Monti, S.

10.1101/323964 — bioinformatics — Posted on 2018-05-16

1358 An insulin, AMPK, and steroid hormone-mediated metabolic switch regulates the transition between growth and diapause in C. elegans

Penkov, S.; Erkut, C.; Oertel, J.; Galli, R.; Vorkel, D.; Verbavatz, J.-M.; Koch, E.; Fahmy, K.; Kurzchalia, T. V.

10.1101/323956 — biochemistry — Posted on 2018-05-16

1359 Cerox1 and microRNA-488-3p noncoding RNAs jointly regulate mitochondrial complex I catalytic activity

Sirey, T. M.; Roberts, K.; Haerty, W.; Bedoya-Reina, O.; Rogatti-Granados, S.; Tan, J.; Li, N.; Heather, L.; Cooper, S.; Marques, A.; Ponting, C.

10.1101/323907 — biochemistry — Posted on 2018-05-16

1360 Fusion surface structure, function, and dynamics of gamete fusogen HAP2

Feng, J.; Dong, X.; Pinello, J. F.; Zhang, J.; Lu, C.; Iacob, R. E.; Engen, J. R.; Snell, W. J.; Springer, T.

10.1101/324194 — biochemistry — Posted on 2018-05-16

1361 Detection of immune system activation in hemolymph of Drosophila larvae exposed to chitosan-coated magnetite nanoparticles

Vela, D.; Rondal, J.; Debut, A.; Vizuete, K.; Pilaquinga, F.

10.1101/324335 — physiology — Posted on 2018-05-16

1362 Transcription drives DNA replication initiation and termination in human cells

Chen, Y.-H.; Keegan, S.; Kahli, M.; Tonzi, P.; Fenyo, D.; Huang, T. T.; Smith, D. J.

10.1101/324079 — molecular biology — Posted on 2018-05-16

1363 The propagation of active-passive interfaces in bacterial swarms

Patteson, A. E.; Gopinath, A.; Arratia, P. E.

10.1101/324251 — biophysics — Posted on 2018-05-16

1364 Rampant cryptic sex chromosome drive in Drosophila

Bachtrog, D.; Ellison, C.; Leonard, C.; Landeen, E.; Gibilisco, L.; Phadnis, N.

10.1101/324368 — genomics — Posted on 2018-05-16

1365 Neurofibromin is essential to maintain metabolic function and sustain life in the adult mouse

Turner, A. N.; Johnson, M. S.; Brosius, S. N.; Yoder, B. S.; Yang, K.; Yang, Q.; Moore, J. F.; Sharer, J. D.; Smith, D. L.; Nagy, T. R.; Schoeb, T. R.; Korf, B. R.; Kesterson, R. A.

10.1101/324061 — genetics — Posted on 2018-05-16

1366 Bayesian placement of fossils on phylogenies from quantitative morphometric data

Parins-Fukuchi, C.

10.1101/275446 — evolutionary biology — Posted on 2018-05-16

1367 Neuronal Modulation of Brown Adipose Activity Through Perturbation of White Adipocyte Lipogenesis

Guilherme, A.; Pedersen, D. J.; Henriques, F.; Bedard, A. H.; Henchey, E.; Kelly, M.; Rahmouni, K.; Morgan, D. A.; Czech, M. P.

10.1101/324160 — cell biology — Posted on 2018-05-16

1368 The genetic prehistory of the Greater Caucasus

Wang, C.-C.; Reinhold, S. R.; Kalmykov, A.; Wissgott, A.; Brandt, G.; Jeong, C.; Cheronet, O.; Ferry, M.; Harney, E.; Keating, D.; Mallick, S.; Rohland, N.; Stewardson, K.; Kantorovich, A. R.; Maslov, V. E.; Petrenko, V. G.; Erlikh, V. R.; Atabiev, B. C.; Magomedov, R. G.; Kohl, P. L.; Alt, K. W.; Pichler, S. L.; Gerling, C.; Meller, H.; Vardanyan, B.; Yeganyan, L.; Rezepkin, A. D.; Mariaschk, D.; Berezina, N. Y.; Gresky, J.; Fuchs, K.; Knipper, C.; Schiffels, S.; Balanovska, E.; Balanovsky, O.; Mathieson, I.; Higham, T.; Berezin, Y. B.; Buzhilova, A. P.; Trifonov, V.; Pinhasi, R.; Belinskiy,

10.1101/322347 — genomics — Posted on 2018-05-16

1369 Genetic determinants of risk and survival in pulmonary arterial hypertension

10.1101/317164 — genetics — Posted on 2018-05-16

1370 scVAE: Variational auto-encoders for single-cell gene expression data

Gronbech, C. H.; Vording, M. F.; Timshel, P. N.; Sonderby, C. K.; Pers, T. H.; Winther, O.

10.1101/318295 — bioinformatics — Posted on 2018-05-16

1371 Analysis of functional connectivity and oscillatory power using DICS: from raw MEG data to group-level statistics in Python

van Vliet, M.; Liljeström, M.; Aro, S.; Salmelin, R.; Kujala, J.

10.1101/245530 — neuroscience — Posted on 2018-05-16

1372 Are you suppressed? Viral load test coverage for people living with HIV in Mutare District, Manicaland Province, Zimbabwe, 2015-2017

Uzande, C.; Edwards, J. K.; Owiti, P. O.; Maravanyika, A. T.; Mashizha, S.; Mafaune, P. T.

10.1101/324350 — epidemiology — Posted on 2018-05-16

1373 GMSE: an R package for generalised management strategy evaluation

Duthie, A. B.; Cusack, J. J.; Jones, I. L.; Minderman, J.; Nilsen, E. B.; Pozo, R. A.; Rakotonarivo, O. S.; Van Moorter, B.; Bunnefeld, N.

10.1101/221432 — ecology — Posted on 2018-05-16

1374 Mapping Local Conformational Landscapes of Proteins in Solution

ElGamacy, M.; Riss, M.; Zhu, H.; Truffault, V.; Coles, M.

10.1101/273607 — biophysics — Posted on 2018-05-16

1375 No evidence for associations between men’s salivary testosterone and responses on the Intrasexual Competitiveness Scale

Torrance, J.; Hahn, A.; Kandrik, M.; DeBruine, L.; Jones, B.

10.1101/198424 — animal behavior and cognition — Posted on 2018-05-16

1376 Acetylcholine inhibits platelet activation and regulates hemostasis

Bennett, J. A.; Ture, S. K.; Schmidt, R. A.; Mastrangelo, M. A.; Cameron, S. J.; Terry, L. E.; Yule, D. I.; Morrell, C. N.; Lowenstein, C. J.

10.1101/324319 — pharmacology and toxicology — Posted on 2018-05-16

1377 Anti-aging food that improves markers of health in senior dogs by modulating gut microbiota and metabolite profiles

Gebreselassie, E. E.; Jackson, M.; Yerramilli, M.; Jewell, D.

10.1101/324327 — microbiology — Posted on 2018-05-16

1378 Conditional control of fluorescent protein degradation by an auxin-dependent nanobody

Daniel, K.; Icha, J.; Horenburg, C.; Muller, D.; Norden, C.; Mansfeld, J.

10.1101/298257 — cell biology — Posted on 2018-05-16

1379 Stability of local secondary structure determines selectivity of viral RNA chaperones

Bravo, J. P. K.; Borodavka, A.; Barth, A.; Calabrese, A. N.; Mojzes, P.; Cockburn, J. J. B.; Lamb, D. C.; Tuma, R.

10.1101/293191 — biophysics — Posted on 2018-05-16

1380 Science podcasts: analysis of global production and output from 2004 to 2018

MacKenzie, L. E.

10.1101/298356 — scientific communication and education — Posted on 2018-05-16

1381 3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification

Kalinin, A. A.; Allyn-Feuer, A.; Ade, A.; Fon, G.-V.; Meixner, W.; Dilworth, D.; Husain, S. S.; de Wet, J. R.; Higgins, G. A.; Zheng, G.; Creekmore, A.; Wiley, J. W.; Verdone, J. E.; Veltri, R. W.; Pienta, K. J.; Coffey, D. S.; Athey, B. D.; Dinov, I. D.

10.1101/313411 — bioinformatics — Posted on 2018-05-16

1382 Methylation patterns reveal cryptic structure and a pathway for adaptive divergence in a panmictic carnivore

Johnson, J. B.; Murray, D. L.; Shafer, A. B. A.

10.1101/316711 — genomics — Posted on 2018-05-16

1383 In silico analysis of piRNAs in retina reveals potential targets in intracellular transport and retinal degeneration

Sivagurunathan, S.; Srikakulam, N.; Arunachalam, J. P.; Pandi, G.; Chidambaram, S.

10.1101/305144 — cell biology — Posted on 2018-05-16

1384 Cross-Platform Mechanical Characterization of Lung Tissue

Polio, S. R.; Kundu, A. N.; Dougan, C. E.; Birch, N. P.; Aurien-Blajeni, D. E.; Schiffman, J. D.; Crosby, A. J.; Peyton, S. R.

10.1101/271726 — bioengineering — Posted on 2018-05-16

1385 Binding specificities of human RNA binding proteins towards structured and linear RNA sequences

Jolma, A.; Zhang, J.; Mondragon, E.; Kivioja, T.; Yin, Y.; Zhu, F.; Morris, Q.; Hughes, T. R.; Maher, L. J.; Taipale, J.

10.1101/317909 — systems biology — Posted on 2018-05-16

1386 Estrogen Signaling in Arcuate Kiss1 Neurons Suppresses a Sex-Dependent Circuit That Promotes Dense Strong Bones in Female Mice

Herber, C. B.; Krause, W. C.; Wang, L.; Bayrer, J. R.; Li, A.; Schmitz, M. T.; Fields, A.; Ford, B.; Reid, M. S.; Nomura, D. K.; Nissenson, R. A.; Correa, S. M.; Ingraham, H. A.

10.1101/315283 — physiology — Posted on 2018-05-16

1387 Chimeric antigen receptors that trigger phagocytosis

Morrissey, M. A.; Williamson, A. P.; Steinbach, A. M.; Roberts, E. W.; Kern, N.; Headley, M. B.; Vale, R. D.

10.1101/316323 — cell biology — Posted on 2018-05-16

1388 Dynamic and Selective Low-Complexity Domain Interactions Revealed by Live-Cell Single-Molecule Imaging

Chong, S.; Dugast-Darzacq, C.; Liu, Z.; Dong, P.; Dailey, G.; Cattoglio, C.; Banala, S.; Lavis, L.; Darzacq, X.; Tjian, R.

10.1101/208710 — biophysics — Posted on 2018-05-16

1389 Complete plastome sequences from Bertholletia excelsa and 23 related species yield informative markers for Lecythidaceae

Thomson, A. M.; Vargas, O. M.; Dick, C. W.

10.1101/192112 — evolutionary biology — Posted on 2018-05-16

1390 Genome-Scale CRISPR Screening Identifies Novel Human Pluripotent Gene Networks

Ihry, R. J.; Salick, M. R.; Ho, D.; Sondey, M.; Kommineni, S.; Paula, S.; Raymond, J.; Frias, E.; Worringer, K. A.; Russ, C.; Reece-Hoyes, J.; Altshuler, B.; Randhawa, R.; Yang, Z.; McAllister, G.; Hoffman, G. R.; Dolmetsch, R.; Kaykas, A.

10.1101/323436 — cell biology — Posted on 2018-05-16

1391 Targeted induction of de novo Fatty acid synthesis enhances MDV replication in a COX-2/PGE2 dependent mechanism through EP2 and EP4 receptors engagement

Boodhoo, N.; Kamble, N.; Kaufer, B.; Behboudi, S.

10.1101/323840 — microbiology — Posted on 2018-05-16

1392 Manganese acquisition is essential for virulence of Enterococcus faecalis

Colomer-Winter, C.; Flores-Mireles, A. L.; Baker, S. P.; Frank, K. L.; Lynch, A. J.; Hultgren, S. J.; Kitten, T.; Lemos, J. A.

10.1101/323832 — microbiology — Posted on 2018-05-16

1393 Nanotube-mediated cross-feeding couples the metabolism of interacting bacterial cells

Shitut, S.; Ahsendorf, T.; Pande, S.; Egbert, M.; Kost, C.

10.1101/114462 — microbiology — Posted on 2018-05-15

1394 Programmed Variations of Cytokinesis Contribute to Morphogenesis in the C. elegans embryo

Bai, X.; Lee, P.-Y.; Chen, C.-Y.; Simmons, J. R.; Nebenfuehr, B.; Mitchell, D.; Klebanow, L. R.; Mattson, N.; Sorensen Turpin, C. G.; Chen, B.-C.; Betzig, E.; Bembenek, J. N.

10.1101/319657 — cell biology — Posted on 2018-05-15

1395 Chromone scaffold-mediated reprogramming of the epithelial mesenchymal transition prevents fibrosis

Kim, H.-S.; Kim, J.-H.; Yoon, Y.-M.; Meang, M. K.; Lee, J. Y.; Lee, T. H.; Kim, I.-H.; Youn, B.-S.

10.1101/106591 — cell biology — Posted on 2018-05-15

1396 A large-scale analysis of bioinformatics code on GitHub

Russell, P.; Johnson, R. L.; Ananthan, S.; Harnke, B.; Carlson, N. E.

10.1101/321919 — bioinformatics — Posted on 2018-05-15

1397 Linking signal detection theory and encoding models to reveal independent neural representations from neuroimaging data

Soto, F. A.; Vucovich, L. E.; Ashby, F. G.

10.1101/254995 — neuroscience — Posted on 2018-05-15

1398 Overcome Competitive Exclusion in Ecosystems

Wang, X.; Liu, Y.-Y.

10.1101/312645 — ecology — Posted on 2018-05-15

1399 Highly efficient homology-directed repair using Cas9 protein in Ceratitis capitata

Aumann, R. A.; Schetelig, M. F.; Haecker, I.

10.1101/323113 — genetics — Posted on 2018-05-15

1400 Development and decline of the hippocampal long-axis specialization and differentiation during encoding and retrieval of episodic memories

Langnes, E.; Vidal-Pineiro, D.; Sneve, M. H.; Amlien, I. K.; Walhovd, K. B.; Fjell, A. M.

10.1101/323097 — neuroscience — Posted on 2018-05-15

1401 CRISPR/Cas9 gene editing to make conditional mutants of the human malaria parasite Plasmodium falciparum

Kudyba, H. M.; Cobb, D. W.; Florentin, A.; Krakowiak, M.; Muralidharan, V.

10.1101/323360 — cell biology — Posted on 2018-05-15

1402 Controlling CRISPR-Cas9 with ligand-activated and ligand-deactivated sgRNAs

Kundert, K.; Lucas, J. E.; Watters, K. E.; Fellmann, C.; Ng, A. H.; Heineike, B. M.; Fitzsimmons, C. M.; Oakes, B. L.; Savage, D. F.; El-Samad, H.; Doudna, J. A.; Kortemme, T.

10.1101/323105 — synthetic biology — Posted on 2018-05-15

1403 Input-dependent modulation of MEG gamma oscillations reflects gain control in the visual cortex

Orekhova, E. V.; Sysoeva, O. V.; Schneiderman, J. F.; Lundstrom, S.; Galuta, I. A.; Goiaeva, D. E.; Prokofyev, A. O.; Riaz, B.; Keeler, C.; Hadjikhani, N.; Gillberg, C.; Stroganova, T.

10.1101/188326 — neuroscience — Posted on 2018-05-15

1404 Non-monotonic recruitment of ventromedial prefrontal cortex during remote memory recall

Barry, D. N.; Chadwick, M. J.; Maguire, E. A.

10.1101/202689 — neuroscience — Posted on 2018-05-15

1405 The Valuation of Social Rewards in Schizophrenia

Catalano, L.; Heerey, E.; Gold, J.

10.1101/319095 — neuroscience — Posted on 2018-05-15

1406 Protein mismatches caused by reassortment influence functions of the reovirus capsid

Thete, D.; Danthi, P.

10.1101/322651 — microbiology — Posted on 2018-05-15

1407 Marine mammals and sea turtles listed under the U.S. Endangered Species Act are recovering

Valdivia, A.; Wolf, S.; Suckling, K.

10.1101/319921 — ecology — Posted on 2018-05-15

1408 A Timer for analyzing temporally dynamic changes in transcription during differentiation in vivo

Bending, D.; Prieto Martin, P.; Paduraru, A.; Ducker, C.; Marzaganov, E.; Laviron, M.; Kitano, S.; Miyachi, H.; Crompton, T.; Ono, M.

10.1101/217687 — cell biology — Posted on 2018-05-15

1409 Pyruvate carboxylase supports the pulmonary tropism of metastatic breast cancer

Shinde, A.; Wilmanski, T.; Chen, H.; Teegarden, D.; Wendt, M.

10.1101/317743 — cancer biology — Posted on 2018-05-15

1410 A novel LC system embeds analytes in pre-formed gradients for rapid, ultra-robust proteomics

Bache, N.; Geyer, P. E.; Bekker-Jensen, D. B.; Hoerning, O.; Falkenby, L.; Treit, P. V.; Doll, S.; Paron, I.; Meier, F.; Olsen, J. V.; Vorm, O.; Mann, M.

10.1101/323048 — biochemistry — Posted on 2018-05-15

1411 Optimization of Golden Gate assembly through application of ligation sequence-dependent fidelity and bias profiling

Vladimir, P.; Ong, J. L.; Kucera, R. B.; Langhorst, B. W.; Bilotti, K.; Pryor, J. M.; Cantor, E. J.; Canton, B.; Knight, T. F.; Evans, T. C.; Lohman, G.

10.1101/322297 — synthetic biology — Posted on 2018-05-15

1412 Sensitive detection of pre-integration intermediates of LTR retrotransposons in crop plants

Cho, J.; Benoit, M.; Catoni, M.; Drost, H.-G.; Brestovitsky, A.; Oosterbeek, M.; Paszkowski, J.

10.1101/317479 — plant biology — Posted on 2018-05-15

1413 Environmental determinants of pyoverdine production, exploitation and competition in natural Pseudomonas communities

Butaite, E.; Kramer, J.; Wyder, S.; Kuemmerli, R.

10.1101/263004 — microbiology — Posted on 2018-05-15

1414 Can herbivore-induced volatiles protect plants by increasing the herbivores’ susceptibility to natural pathogens?

Gasmi, L.; Martinez-Solis, M.; Frattini, A.; Ye, M.; Collado, M. C.; Turlings, T.; Erb, M.; Herrero, S.

10.1101/317560 — microbiology — Posted on 2018-05-15

1415 Frequent variants in the Japanese population determine quasi-Mendelian inheritance of rare retinal ciliopathy

Nikopoulos, K.; Cisarova, K.; Koskiniemi-Kuendig, H.; Miyake, N.; Farinelli, P.; Quinodoz, M.; Imran, M.; Prunotto, A.; Akiyama, M.; Kamatani, Y.; Terao, C.; Miya, F.; Ikeda, Y.; Ueno, S.; Fuse, N.; Murakami, A.; Terasaki, H.; Sonoda, K.-H.; Ishibashi, T.; Kubo, M.; Cremers, F. P. M.; Matsumoto, N.; Nishiguchi, K. M.; Nakazawa, T.; Rivolta, C.

10.1101/257634 — genomics — Posted on 2018-05-15

1416 Relief of the Dma1-mediated checkpoint requires Dma1 autoubiquitination and dynamic localization

Jones, C. M.; Chen, J.-S.; Johnson, A. E.; Elmore, Z. C.; Cullati, S. N.; Beckley, J. R.; Gould, K. L.

10.1101/322214 — cell biology — Posted on 2018-05-15

1417 Fibroblast Growth Factor 2 lethally sensitizes cancer cells to stress-targeted therapeutic inhibitors

Dias, M. H.; Fonseca, C. S.; Zeidler, J. D.; Albuquerque, L. L.; da Silva, M. S.; Cararo-Lopes, E.; Reis, M. S.; Noel, V.; Prior, I. A.; Armelin, H. A.

10.1101/227496 — cancer biology — Posted on 2018-05-15

1418 Recovery after stroke: not so proportional after all?

Hope, T. M. H.; Friston, K.; Price, C. J.; Leff, A. P.; Rotshtein, P.; Bowman, H.

10.1101/306514 — neuroscience — Posted on 2018-05-15

1419 Phase Separations Driven by RNA Scaffolds and Protein Sequestration in FXTAS

Botta-Orfila, T.; Cid-Samper, F.; Gelabert-Baldrich, I.; Lang, B.; Lorenzo-Gotor, N.; Delli Ponti, R.; WFM Severijnen, L.-A.; Bolognesi, B.; Gelpi, E.; Hukema-Felten, R. K.; Tartaglia, G. G.

10.1101/298943 — molecular biology — Posted on 2018-05-15

1420 Using set theory to reduce redundancy in pathway sets

Stoney, R. A.; Robertson, D. L.; Nenadic, G.; Schwartz, J.-M.

10.1101/319731 — bioinformatics — Posted on 2018-05-15

1421 Reduced prefrontal synaptic connectivity and disturbed oscillatory population dynamics in the CNTNAP2 model of autism

Lazaro, M. T.; Taxidis, J.; Shuman, T.; Bachmutsky, I.; Ikrar, T.; Santos, R.; Marcello, G. M.; Mylavarapu, A.; Chandra, S.; Foreman, A.; Goli, R.; Sharma, N.; Tran, D.; Azhdam, M.; Dong, H.; Penagarikano, O.; Masmanidis, S.; Racz, B.; Xu, X.; Geschwind, D. H.; Golshani, P.

10.1101/322388 — neuroscience — Posted on 2018-05-15

1422 The tryptophan salvage pathway is dynamically regulated by the iron-dependent repressor YtgR in Chlamydia trachomatis

Pokorzynski, N. D.; Carabeo, R. A.

10.1101/322586 — microbiology — Posted on 2018-05-15

1423 Ataxin-7 and non-stop coordinate SCAR protein levels, subcellular localization, and actin cytoskeleton organization

Cloud, V.; Momtahan, E.; Jack, J. L.; Leiva, E.; Rapp, S. R.; Miller, S. A.; Holsapple, D.; Shelton, L. G.; Pierce, R. A.; Zhang, Y.; Florens, L.; Washburn, M. P.; Mohan, R. D.

10.1101/309476 — cell biology — Posted on 2018-05-15

1424 Connectivity-Informed Adaptive Regularization for Generalized Outcomes

Brzyski, D.; Karas, M.; Ances, B.; Dzemidzic, M.; Goni, J.; Randolph, T. W.; Harezlak, J.

10.1101/322420 — neuroscience — Posted on 2018-05-15

1425 Automatic Localization of the Subthalamic Nucleus on Patient-Specific Clinical MRI by Incorporating 7T MRI and Machine Learning: Application in Deep Brain Stimulation

Kim, J.; Duchin, Y.; Shamir, R. R.; Patriat, R.; Vitek, J.; Harel, N.; Sapiro, G.

10.1101/322230 — neuroscience — Posted on 2018-05-15

1426 Putting Focus on Transcranial Direct Current Stimulation in Language Production Studies

Klaus, J.; Schutter, D. J. L. G.

10.1101/230623 — neuroscience — Posted on 2018-05-15

1427 Modelling palaeoecological time series using generalized additive models

Simpson, G. L.

10.1101/322248 — ecology — Posted on 2018-05-15

1428 Dystroglycan proteolysis is conformationally-regulated and disrupted by disease-associated mutations

Hayward, A. N.; Gordon, W. R.

10.1101/279315 — cell biology — Posted on 2018-05-15

1429 CLASP stabilizes microtubule plus ends created by serving to drive cortical array reorientation

Lindeboom, J. J.; Nakamura, M.; Saltini, M.; Hibbel, A.; Walia, A.; Keetlaar, T.; Emons, A. M. C.; Sedbrook, J. C.; Kirik, V.; Mulder, B. M.; Ehrhardt, D. W.

10.1101/196329 — cell biology — Posted on 2018-05-15

1430 Recalibration of path integration in hippocampal place cells

Jayakumar, R. P.; Madhav, M. S.; Savelli, F.; Blair, H. T.; Cowan, N. J.; Knierim, J. J.

10.1101/319269 — neuroscience — Posted on 2018-05-15

1431 Clinical scoring is the most sensitive biomarker detecting developing sepsis in newborn mice

Fehlhaber, B.; Rübensam, K.; Heinemann, A. S.; Pfeifer, S.; von Köckritz-Blickwede, M.; Viemann, D.

10.1101/322776 — immunology — Posted on 2018-05-15

1432 Sex-specific additive genetic variances and correlations for fitness in a song sparrow (Melospiza melodia) population subject to natural immigration and inbreeding

Wolak, M. E.; Arcese, P.; Keller, L. F.; Nietlisbach, P.; Reid, J. M.

10.1101/272138 — evolutionary biology — Posted on 2018-05-15

1433 LAESI mass spectrometry imaging as a tool to differentiate the root metabolome of native and range-expanding plant species

Kulkarni, P.; A. Wilschut, R.; J.F. Verhoeven, K.; H. van der Putten, W.; Garbeva, P.

10.1101/322867 — ecology — Posted on 2018-05-15

1434 Psychophysiological interaction and beta series correlation for task modulated connectivity: modeling considerations and their relationships

Di, X.; Zhang, Z.; Biswal, B. B.

10.1101/322073 — neuroscience — Posted on 2018-05-15

1435 Bacterial plasma membrane is the main cellular target of silver nanoparticles in Escherichia coli and Pseudomonas aeruginosa

Bondarenko, O.; Mariliis Sihtmäe, M.; Kuzmiciova, J.; Rageliene, L.; Kahru, A.; Daugelavicius, R.

10.1101/322727 — microbiology — Posted on 2018-05-15

1436 Annotation of phenotypes using ontologies: a Gold Standard for the training and evaluation of natural language processing systems

Dahdul, W.; Manda, P.; Cui, H.; Balhoff, J. P.; Dececchi, A.; Ibrahim, N.; Lapp, H.; Vision, T.; Mabee, P. M.

10.1101/322156 — evolutionary biology — Posted on 2018-05-15

1437 Biodiversity on Indigenous lands equals that in protected areas

Schuster, R.; Germain, R.; Bennett, J.; Reo, N.; Secord, D.; Arcese, P.

10.1101/321935 — ecology — Posted on 2018-05-15

1438 Flow-wise or path-wise: diffusion in a fragmented dendritic network and implications for eels

Domange, J.; Lambert, P.; Beaulaton, L.; Drouineau, H.

10.1101/323006 — ecology — Posted on 2018-05-15

1439 Fast Nonnegative Matrix Factorization andApplications to Pattern Extraction, Deconvolutionand Imputation

Lin, X.; Boutros, P. C.

10.1101/321802 — bioinformatics — Posted on 2018-05-15

1440 Physiomarkers in Real-Time Physiological Data Streams Predict Adult Sepsis Onset Earlier Than Clinical Practice

van Wyk, F.; Khojandi, A.; Davis, R. L.; Kamaleswaran, R.

10.1101/322305 — bioinformatics — Posted on 2018-05-15

1441 Bit-parallel sequence-to-graph alignment

Rautiainen, M.; Mäkinen, V.; Marschall, T.

10.1101/323063 — bioinformatics — Posted on 2018-05-15

1442 Understanding the impact of crosslinked PCL/PEG/GelMA electrospun nanofibers on bactericidal activity

De-Paula, M.; Ghannadian, P.; Afewerki, S.; Marciano, F.; Viana, B.; Harb, S.; Bassous, N.; Webster, T.; Lobo, A.

10.1101/322321 — bioengineering — Posted on 2018-05-15

1443 Selectively increased autofluorescence at fingernails and certain regions of skin: A potential novel diagnostic biomarker for Parkinson disease

Wu, D.; Tao, Y.; Zhang, M.; Li, Y.; Shen, L.; Li, Y.; Ying, W.

10.1101/322222 — neuroscience — Posted on 2018-05-15

1444 ATPase and protease domain movements in the bacterial AAA+ protease FtsH are driven by thermal fluctuations

Ruer, M.; Krainer, G.; Gröger, P.; Schlierf, M.

10.1101/323055 — molecular biology — Posted on 2018-05-15

1445 The multidrug resistance efflux pump MexCD-OprJ is a switcher of the Pseudomonas aeruginosa quorum sensing response

Alcalde-Rico, M.; Olivares Pacheco, J.; Alvarez-Ortega, C.; Camara, M.; Martinez, J. L.

10.1101/322792 — microbiology — Posted on 2018-05-15

1446 Measures of reproducibility in sampling and laboratory processing methods in high-throughput microbiome analysis

Vera-Wolf, P.; Cardenas, J. P.; Morton, A. M.; Norambuena, T.; Torres, R.; Leon, L. E.; Bik, E. M.; Ugalde, J. A.; Almonacid, D. E.; Richman, J.; Apte, Z. S.

10.1101/322677 — microbiology — Posted on 2018-05-15

1447 Improving the consistency of functional genomics screens using molecular features - a multi-omics, pan-cancer study

Wang, W.; Malyutina, A.; Pessia, A.; Heckman, C.; Tang, J.

10.1101/322883 — systems biology — Posted on 2018-05-15

1448 Effect of fosfomycin, Cynara scolymus extract, deoxynivalenol and their combinations on intestinal health of weaned piglets

Martinez, G.; Dieguez, S. N.; Fernandez Paggi, M. B.; Riccio, M. B.; Perez Gaudio, D. S.; Decundo, J. M.; Romanelli, A.; Amanto, F. A.; Tapia, M. O.; Soraci, A. L.

10.1101/323204 — systems biology — Posted on 2018-05-15

1449 Mouse dLGN receives input from a diverse population of retinal ganglion cells with limited convergence

Roman Roson, M.; Bauer, Y.; Berens, P.; Euler, T.; Busse, L.

10.1101/322164 — neuroscience — Posted on 2018-05-15

1450 Lead-DBS v2: Toward a comprehensive pipeline for deep brain stimulation imaging

Horn, A.; Li, N.; Dembek, T. A.; Kappel, A.; Boulay, C.; Ewert, S.; Tietze, A.; Husch, A.; Perera, T.; Neumann, W.-J.; Reisert, M.; Si, H.; Oostenveld, R.; Rorden, C.; Yeh, F.-C.; Fang, Q.; Herrington, T. M.; Vorwerk, J.; Kuehn, A. A.

10.1101/322008 — neuroscience — Posted on 2018-05-15

1451 Kaposi’s sarcoma-associated herpesvirus ORF68 is a DNA binding protein required for viral genome cleavage and packaging

Gardner, M. R.; Glaunsinger, B. A.

10.1101/322719 — molecular biology — Posted on 2018-05-15

1452 Phenylhydrazones are active against non-replicating Mycobacterium tuberculosis

Bonnett, S. A.; Dennison, D.; Bajpai, A.; Files, M.; Parish, T.

10.1101/323220 — microbiology — Posted on 2018-05-15

1453 A role for GrgA in regulation of σ28-dependent transcription in the obligate intracellular bacterial pathogen Chlamydia trachomatis

Desai, M.; Wurihan, W.; Di, R.; Fondell, J. D.; Nickels, B.; Bao, X.; Fan, H.

10.1101/322701 — microbiology — Posted on 2018-05-15

1454 Effective soil extraction method for cultivating previously uncultured soil bacteria

Manh Nguyen, T.; Seo, C.; Ji, M.; Paik, M.-J.; Myung, S.-W.; Kim, J.

10.1101/322735 — microbiology — Posted on 2018-05-15

1455 Filamentation and restoration of normal growth in E.coli using a combined CRISPRi sgRNA/antisense RNA approach

Mückl, A.; Schwarz-Schilling, M.; Fischer, K.; Simmel, F. C.

10.1101/323212 — synthetic biology — Posted on 2018-05-15

1456 Expression of novel fusion antiviral proteins Ricin A Chain-Pokeweed Antiviral Proteins (RTA-PAPs) in Escherichia coli and their inhibition of protein synthesis and of hepatitis B virus in vitro

Hassan, Y.; Ogg, S.; Ge, H.

10.1101/322040 — synthetic biology — Posted on 2018-05-15

1457 Genome-wide analysis of genetic predisposition to Alzheimer’s disease and related sex-disparities

Nazarian, A.; Yashin, A. I.; Kulminski, A. M.

10.1101/321992 — neuroscience — Posted on 2018-05-15

1458 Functional connectivity alterations of the temporal lobe and hippocampus in semantic dementia and Alzheimer’s disease

Schwab, S.; Afyouni, S.; Chen, Y.; Han, Z.; Guo, Q.; Dierks, T.; Wahlund, L.-O.; Grieder, M.

10.1101/322131 — neuroscience — Posted on 2018-05-15

1459 Lethality of leptospirosis depends on sex: male hamsters succumb to infection with lower doses of pathogenic Leptospira

Gomes, C. K.; Guedes, M.; Potula, H.-H.; Dellagostin, O. A.; Gomes-Solecki, M.

10.1101/322784 — microbiology — Posted on 2018-05-15

1460 Ascitic bacterial composition is associated with clinical outcomes in cirrhotic patients with culture-negative and nonneutrocytic ascites

Chen, Y.; Guo, J.; Shi, D.; Fang, D.; Chen, C.; Li, L.

10.1101/322800 — microbiology — Posted on 2018-05-15

1461 Underestimation of carbohydrates by sugar alcohols in classical anthrone-based colorimetric techniques compromises insect metabolic and energetic studies

Body, M. J.; Casas, J.; Christides, J.-P.; Giron, D.

10.1101/322123 — ecology — Posted on 2018-05-15

1462 Epididymal glucocorticoid receptors promote intergenerational transmission of paternal stress

Chan, J. C.; Nugent, B. M.; Morrison, K. E.; Jasarevic, E.; Bhanu, N. V.; Garcia, B. A.; Bale, T. L.

10.1101/321976 — neuroscience — Posted on 2018-05-15

1463 Histophilus somni Survives in Bovine Macrophages by Interfering with Phagosome-Lysosome Fusion, but Requires IbpA for Optimal Serum Resistance

Pan, Y.; Tagawa, Y.; Champion, A. E.; Sandal, I.; Inzana, T. J.

10.1101/322768 — microbiology — Posted on 2018-05-15

1464 TRAIL (CD253) Sensitizes Human Airway Epithelial Cells to Toxin-Induced Cell Death

Rong, Y.; Westfall, J.; Ehrbar, D.; LaRocca, T.; Mantis, N.

10.1101/322479 — immunology — Posted on 2018-05-15

1465 Tissue-specific trans regulation of the mouse epigenome

Baker, C. L.; Walker, M.; Arat, S.; Ananda, G.; Petkova, P.; Powers, N.; Tian, H.; Spruce, C.; Ji, B.; Rausch, D.; Choi, K.; Petkov, P. M.; Carter, G. W.; Paigen, K.

10.1101/322081 — genomics — Posted on 2018-05-15

1466 Genomic insights into metabolism and phylogeography of the mesophilic Thermotogae genus Mesotoga

Nesbo, C. L.; Charchuk, R.; Pollo, S. M. J.; Budwill, K.; Kublanov, I.; Haverkamp, T. H. A.; Foght, J.

10.1101/322537 — evolutionary biology — Posted on 2018-05-15

1467 Did a plant-herbivore arms race drive chemical diversity in Euphorbia?

Ernst, M.; Nothias-Scaglia, L.-F.; van der Hooft, J.; Silva, R. R.; Saslis-Lagoudakis, C. H.; Grace, O. M.; Martinez-Swatson, K.; Hassemer, G.; Funez, L.; T. Simonsen, H.; Medema, M. H.; Staerk, D.; Nilsson, N.; Lovato, P.; Dorrestein, P.; Ronsted, N.

10.1101/323014 — evolutionary biology — Posted on 2018-05-15

1468 What is Antagonistic Pleiotropy?

Mitteldorf, J.

10.1101/321588 — evolutionary biology — Posted on 2018-05-15

1469 The Repertoire of Mutational Signatures in Human Cancer

Alexandrov, L.; Kim, J.; Haradhvala, N. J.; Huang, M. N.; Ng, A. W. T.; Boot, A.; Covington, K. R.; Gordenin, D. A.; Bergstrom, E.; Lopez-Bigas, N.; Klimczak, L. J.; McPherson, J. R.; Morganella, S.; Sabarinathan, R.; Wheeler, D. A.; Mustonen, V.; Getz, G.; Rozen, S. G.; Stratton, M. R.; PCAWG Mutational Signatures Working Group, ; ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Net,

10.1101/322859 — cancer biology — Posted on 2018-05-15

1470 An average-case sublinear exact Li and Stephens forward algorithm

Rosen, Y.; Paten, B.

10.1101/322396 — bioinformatics — Posted on 2018-05-15

1471 Inferring Edge Function in Protein-Protein Interaction Networks

Esposito, D. C.; Cursons, J.; Davis, M. J.

10.1101/321984 — bioinformatics — Posted on 2018-05-15

1472 ALEdb 1.0: A Database of Mutations from Adaptive Laboratory Evolution

Phaneuf, P. V.; Gosting, D.; Palsson, B.; Feist, A.

10.1101/320747 — bioinformatics — Posted on 2018-05-15

1473 The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease

Noronha, A.; Modamio, J.; Jarosz, Y.; Sompairac, N.; Gonzalez, G. P.; Danielsdottir, A. D.; Krecke, M.; Merten, D.; Haraldsdottir, H. S.; Heinken, A.; Heirendt, L.; Magnusdottir, S.; Ravcheev, D. A.; Sahoo, S.; Gawron, P.; Guerard, E.; Fiscioni, L.; Garcia, B.; Prendergast, M.; Puente, A.; Rodrigues, M.; Roy, A.; Rouquaya, M.; Wiltgen, L.; Zagare, A.; John, E.; Krueger, M.; Kuperstein, I.; Zinovyev, A.; Schneider, R.; Fleming, R. M. T.; Thiele, I.

10.1101/321331 — systems biology — Posted on 2018-05-15

1474 Estimating parasite load dynamics to reveal novel resistance mechanisms to human malaria

Bretscher, M. T.; Georgiadou, A.; Lee, H. J.; Walther, M.; van Beek, A. E.; Fitriani, F.; Wouters, D.; Kuijpers, T. W.; Nwakanma, D.; D'Alessandro, U.; Riley, E.; Levin, M.; Coin, L. J.; Ghani, A.; Conway, D. J.; Cunnington, A.

10.1101/321463 — systems biology — Posted on 2018-05-15

1475 Reduced prefrontal synaptic connectivity and disturbed oscillatory population dynamics in the CNTNAP2 model of autism

10.1101/322388 — neuroscience — Posted on 2018-05-15

1476 Methylation-wide association analysis reveals AIM2, DGUOK, GNAI3, and ST14 genes as potential contributors to the Alzheimer’s disease pathogenesis

Nazarian, A.; Yashin, A. I.; Kulminski, A. M.

10.1101/322503 — neuroscience — Posted on 2018-05-15

1477 MTL functional connectivity predicts stimulation-induced theta power

Solomon, E. A.; Gross, R.; Lega, B.; Sperling, M. R.; Worrell, G.; Sheth, S. A.; Zaghloul, K. A.; Jobst, B. C.; Stein, J. M.; Das, S.; Gorniak, R.; Inman, C. S.; Seger, S.; Kragel, J. E.; Rizzuto, D. S.; Kahana, M. J.

10.1101/320663 — neuroscience — Posted on 2018-05-15

1478 Impact of exogenous nitrogen on cyanobacterial abundance and community in oil-contaminated sediment mesocosms

Sun, K.; Qi, M.; Zhu, P.; Wang, H.; Lu, Z.

10.1101/322743 — microbiology — Posted on 2018-05-15

1479 The tryptophan salvage pathway is dynamically regulated by the iron-dependent repressor YtgR in Chlamydia trachomatis

Pokorzynski, N. D.; Carabeo, R. A.

10.1101/322586 — microbiology — Posted on 2018-05-15

1480 Bacterial virulence against an oceanic bloom-forming phytoplankter is mediated by algal DMSP

Barak-Gavish, N.; Frada, M. J.; Lee, P. A.; DiTullio, G. R.; Ku, C.; Malitsky, S.; Aharoni, A.; Green, S. J.; Rotkopf, R.; Kartvelishvily, E.; Sheyn, U.; Schatz, D.; Vardi, A.

10.1101/321398 — microbiology — Posted on 2018-05-15

1481 Validation of novel Mycobacterium tuberculosis isoniazid resistance mutations not detectable by common molecular tests

Kandler, J. L.; Mercante, A.; Dalton, T.; Ezewudo, M. N.; Cowan, L.; Burns, S. P.; Metchock, B.; Cegielski, P.; Posey, J. E.

10.1101/322750 — microbiology — Posted on 2018-05-15

1482 Analysis of differentially methylated regions in primates and nonprimates provides support for the evolutionary hypothesis of schizophrenia

Banerjee, N.; Polushina, T.; Bettella, F.; Steen, V. M.; Andreassen, O. A.; Hellard, S. L.

10.1101/322693 — genomics — Posted on 2018-05-15

1483 Viral Taxonomy Derived From Evolutionary Genome Relationships

Dougan, T.; Quake, S. R.

10.1101/322511 — genomics — Posted on 2018-05-15

1484 Ularcirc: Visualisation and enhanced analysis of circular RNAs via back and canonical forward splicing

Humphreys, D. T.; Fossat, N.; Tam, P. P. L.; Ho, J. W. K.

10.1101/318436 — bioinformatics — Posted on 2018-05-15

1485 The workings and failings of clustering T-cell receptor beta-chain sequences without a known epitope preference

Meysman, P.; De Neuter, N.; Gielis, S.; Bui Thi, D.; Ogunjimi, B.; Laukens, K.

10.1101/318360 — bioinformatics — Posted on 2018-05-15

1486 11 Million SNP Reference Profiles for Identity Searching Across Ethnicities, Kinship, and Admixture

Helfer, B. S.; Ricke, D. O.

10.1101/321190 — bioinformatics — Posted on 2018-05-15

1487 Differential Integration of Transcriptome and Proteome Identifies Pan-cancer Prognostic Biomarkers

Schwartz, G. W.; Petrovic, J.; Zhou, Y.; Faryabi, R. B.

10.1101/322313 — bioinformatics — Posted on 2018-05-15

1488 Learning to act by integrating mental simulations and physical experiments

Dasgupta, I.; Smith, K. A.; Schulz, E.; Tenenbaum, J. B.; Gershman, S. J.

10.1101/321497 — animal behavior and cognition — Posted on 2018-05-15

1489 DynamicME: Dynamic simulation and refinement of integrated models of metabolism and protein expression

Yang, L.; Ebrahim, A.; Lloyd, C. J.; Saunders, M. A.; Palsson, B. O.

10.1101/319962 — systems biology — Posted on 2018-05-15

1490 Estimating Optimal Lysogenic Propensity for Viruses in Stressed Environments

Thakkar, D.; Saini, S.

10.1101/321372 — systems biology — Posted on 2018-05-15

1491 A low-cost hyperspectral scanner for natural imaging above and under water

Nevala, N. E.; Baden, T.

10.1101/322172 — neuroscience — Posted on 2018-05-15

1492 TET1 drives global DNA demethylation via DPPA3-mediated inhibition of maintenance methylation

Mulholland, C. B.; Ryan, J.; Qin, W.; Bartoschek, M. D.; Traube, F. R.; Parsa, E.; Modic, M.; Nixdorf, D.; Ziegenhain, C.; Carell, T.; Enard, W.; Bultmann, S.; Leonhardt, H.

10.1101/321604 — developmental biology — Posted on 2018-05-15

1493 Par3 regulates Rac1 signaling and microtubule organization during planar polarization of auditory hair cells

Lu, X.; Malt, A. L.; Dailey, Z.; Holbrook-rasmussen, J.; Zheng, Y.; Du, Q.

10.1101/323022 — developmental biology — Posted on 2018-05-15

1494 A web bench for analysis and prediction of oncological status from proteomics data of urine samples

Bhalla, S.; Chaudhary, K.; Gautam, A.; Sharma, S.; Raghava, G.

10.1101/315564 — bioinformatics — Posted on 2018-05-15

1495 The RZZ complex facilitates Mad1 binding to Bub1 ensuring efficient checkpoint signaling

Zhang, G.; Kruse, T.; Nilsson, J.

10.1101/322834 — cell biology — Posted on 2018-05-15

1496 Links between environment, diet, and the hunter-gatherer microbiome

Fragiadakis, G. K.; Smits, S. A.; Sonnenburg, E. D.; Van Treuren, W.; Reid, G.; Knight, R.; Manjurano, A.; Changalucha, J.; Dominguez-Bello, M. G.; Leach, J.; Sonnenburg, J. L.

10.1101/319673 — microbiology — Posted on 2018-05-15

1497 Discovery of a novel stereospecific β-hydroxyacyl-CoA lyase/thioesterase shared by three metabolic pathways in Mycobacterium tuberculosis

Wang, H.; Fedorov, A. A.; Fedorov, E. V.; Hunt, D. M.; Rodgers, A.; Garza-Garcia, A.; Bonanno, J. B.; Almo, S. C.; Carvalho, L. P.

10.1101/322404 — biochemistry — Posted on 2018-05-15

1498 Custom hereditary breast cancer gene panel selectively amplifies target genes for reliable variant calling

Amuzu, S.; Revil, T.; Foulkes, W. D.; Ragoussis, J.

10.1101/322180 — genetics — Posted on 2018-05-15

1499 Loss-of-function in IRF2BPL is associated with neurological phenotypes

10.1101/322495 — genetics — Posted on 2018-05-15

1500 A re-inducible genetic cascade patterns the anterior-posterior axis of insects in a threshold-free fashion

Boos, A.; Distler, J.; Rudolf, H.; Klingler, M.; El-Sherif, E.

10.1101/321786 — developmental biology — Posted on 2018-05-15

1501 Bacterial Glycosyltransferase-mediated Cell-surface Chemoenzymatic Glycan Editing: Methods and Applications

Hong, S.; Shi, Y.; Wu, N. C.; Grande, G.; Douthit, L.; Wilson, I. A.; Xie, J.; Wu, P.

10.1101/322461 — biochemistry — Posted on 2018-05-15

1502 Regulation of Harvester Ant Foraging as a Closed-Loop Excitable System

Pagliara, R.; Gordon, D. M.; Leonard, N. E.

10.1101/322974 — animal behavior and cognition — Posted on 2018-05-15

1503 How will it look like? Human posterior parietal and dorsal premotor cortex encode the visual properties of an upcoming action

Pilacinski, A.; Hoeller-Wallscheid, M.; Lindner, A.

10.1101/322925 — neuroscience — Posted on 2018-05-15

1504 White spot syndrome virus infection induces Caspase 1-mediated antiviral cell death in crustacean

Yang, G.; Wang, J.; Luo, T.; Wei, J.; Yang, Y.; Zhang, W.; Zhang, X.

10.1101/322982 — immunology — Posted on 2018-05-15

1505 A proteome-wide screen reveals widespread roles for the phosphatase Cdc14 in the Candida albicans cell cycle

Kaneva, I.; Sudbery, I. M.; Dickman, M.; Sudbery, P.; N/A,

10.1101/322990 — cell biology — Posted on 2018-05-15

1506 Bacterial community shift in nutrient-treated oil-bearing sandstones from the subsurface strata of an onshore oil reservoir and its potential use in Microbial Enhanced Oil Recovery

Phetcharat, T.; Bovonsombut, S.; Dawkrajai, P.; Chitov, T.; Wongpornchai, P.; Saenton, S.; Mhuantong, W.; Kanokratana, P.; Champreda, V.

10.1101/322891 — microbiology — Posted on 2018-05-15

1507 Concentration-dependent reduction of planktonic- and biofilm-state Vibrio alginolyticus by the bacteriophage pVa-21

Kim, S. G.; Giri, S. S.; Jun, J. W.; Yun, S.; Kim, H. J.; Kim, S. W.; Kang, J. W.; Han, S. J.; Jeong, D.; Park, S. C.

10.1101/322933 — microbiology — Posted on 2018-05-15

1508 Molecular epidemiology and drug resistance patterns of Mycobacterium tuberculosis complex isolates from university students and the local community in Eastern Ethiopia

Mekonnen, A.; Merker, M.; Collins, J. M.; Addise, D.; Aseffa, A.; Petros, B.; Ameni, G.; Niemann, S.

10.1101/322958 — epidemiology — Posted on 2018-05-15

1509 1H MR Spectroscopy of the Motor Cortex Immediately following Transcranial Direct Current Stimulation at 7 Tesla

Ryan, K.; Wawrzyn, K.; Gati, J.; Chronik, B.; Wong, D.; Duggal, N.; Bartha, R.

10.1101/322941 — biophysics — Posted on 2018-05-15

1510 Learning the sequence of influenza A genome assembly during viral replication using point process models and fluorescence in situ hybridization

Majarian, T. D.; Murphy, R. F.; Lakdawala, S.

10.1101/322966 — bioinformatics — Posted on 2018-05-15

1511 C. elegans germ cells divide and differentiate along a folded epithelium

Seidel, H. S.; Smith, T. A.; Evans, J. K.; Stamper, J. Q.; Mast, T. G.; Kimble, J.

10.1101/322487 — developmental biology — Posted on 2018-05-14

1512 Theory of Circadian Metabolism

Monti, M.; Lubesnky, D. K.; ten Wolde, P. R.

10.1101/321364 — systems biology — Posted on 2018-05-14

1513 A genetically encoded fluorescent sensor for in vivo imaging of GABA

Looger, L. L.; Marvin, J. S.; Shimoda, Y.; Magloire, V.; Leite, M.; Kawashima, T.; Jensen, T. P.; Knott, E. L.; Novak, O.; Podgorski, K.; Leidenheimer, N. J.; Rusakov, D. A.; Ahrens, M. B.; Kullmann, D. M.

10.1101/322578 — neuroscience — Posted on 2018-05-14

1514 Glucocorticoid-mediated Aβ and SCG10 upregulation evoke microtubule dysfunction and memory deficits

Choi, G. E.; Oh, J. Y.; Lee, H. J.; Chae, C. W.; Kim, J. S.; Jung, Y. H.; Han, H. J.

10.1101/322610 — neuroscience — Posted on 2018-05-14

1515 Microtubule dynamics is required for rapid coiling of haptonemata in haptophyte algae

Nomura, M.; Atsuji, K.; Hirose, K.; Shiba, K.; Nakayama, T.; Ishida, K.-i.; Inaba, K.

10.1101/322453 — cell biology — Posted on 2018-05-14

1516 Dynamics of social representation in the mouse prefrontal cortex

Levy, D. R.; Tamir, T.; Kaufman, M.; Weissbrod, A.; Schneidman, E.; Yizhar, O.

10.1101/321182 — neuroscience — Posted on 2018-05-14

1517 DeepEM: Deep 3D ConvNets With EM For Weakly Supervised Pulmonary Nodule Detection

Zhu, W.; Vang, Y.; Huang, Y.; Xie, X.

10.1101/322370 — bioinformatics — Posted on 2018-05-14

1518 Structural basis for isoform-specific kinesin-1 recognition of Y-acidic cargo adaptors

Pernigo, S.; Chegkazi, M.; Yip, Y.; Treacy, C.; Glorani, G.; Hansen, K.; Politis, A.; Dodding, M. P.; Steiner, R. A.

10.1101/322057 — biochemistry — Posted on 2018-05-14

1519 Metastable XBP1u transmembrane domain mediates insertion into the ER membrane and intramembrane proteolysis by the signal peptide peptidase

Yucel, S. S.; Stelzer, W.; Lorenzoni, A.; Wozny, M.; Langosch, D.; Lemberg, M. K.

10.1101/322107 — cell biology — Posted on 2018-05-14

1520 Thymidylate synthase maintains the de-differentiated state of aggressive breast cancers

Siddiqui, A.; Gollavilli, P. N.; Schwab, A.; Vazakidou, M. E.; Ersan, P.; Ramakrishnan, M.; Pluim, D.; Coggins, S. A.; Saatci, O.; Annaratone, L.; Schellens, J. H.; Kim, B.; Asangani, I. A.; Rasheed, S. A. K.; Marchio, C.; Sahin, O.; Ceppi, P.

10.1101/321943 — cancer biology — Posted on 2018-05-14

1521 A discriminator code-based DTD surveillance ensures faithful glycine delivery for protein biosynthesis in bacteria

Sankaranarayanan, R.; Kuncha, S. K.; Suma, K.; Pawar, K. I.; Gogoi, J.; Routh, S. B.; Pottabathini, S.; Kruparani, S. P.

10.1101/322289 — biochemistry — Posted on 2018-05-14

1522 Classes of ITD predict outcomes in patients with AML treated with FLT3 inhibitors

Schwartz, G. W.; Manning, B.; Zhou, Y.; Velu, P.; Bigdeli, A.; Astles, R.; Lehman, A.; Morrissette, J.; Perl, A.; Carroll, M.; Faryabi, R.

10.1101/322354 — cancer biology — Posted on 2018-05-14

1523 SWI/SNF remains localized to chromatin in the presence of SCHLAP1

Raab, J. R.; Smith, K. N.; Spear, C. C.; Manner, C. J.; Calabrese, J. M.; Magnuson, T.

10.1101/322065 — cancer biology — Posted on 2018-05-14

1524 Small-molecule targeting of MUSASHI RNA-binding activity in acute myeloid leukemia

Minuesa, G.; Albanese, S. K.; Chow, A.; Schurer, A.; Park, S.-M.; Rotsides, C. Z.; Taggart, J.; Rizzi, A.; Naden, L. N.; Chou, T.; Gourkanti, S.; Cappel, D.; Passarelli, M. C.; Fairchild, L.; Adura, C.; Glickman, F. J.; Schulman, J.; Famulare, C.; Patel, M.; Eibl, J. K.; Ross, G. M.; Tan, D. S.; Leslie, C. S.; Beuming, T.; Goldgur, Y.; Chodera, J. D.; Kharas, M. G.

10.1101/321174 — cancer biology — Posted on 2018-05-14

1525 Relief of the Dma1-mediated checkpoint requires Dma1 autoubiquitination and dynamic localization

Jones, C. M.; Chen, J.-S.; Johnson, A. E.; Elmore, Z. C.; Cullati, S. N.; Beckley, J.; Gould, K. L.

10.1101/322214 — cell biology — Posted on 2018-05-14

1526 Studies of Bending Effects of Microvilli of Leukocyte on Rolling Adhesion

Wu, T.-H.; Qi, D.

10.1101/322198 — biophysics — Posted on 2018-05-14

1527 Two-dimensional local Fourier image reconstruction via domain decomposition Fourier continuation method

Shi, R.; Jung, J.-H.; Schweser, F.

10.1101/322438 — neuroscience — Posted on 2018-05-14

1528 Clathrin plaques form mechanotransducing platforms

Franck, A.; Laine, J.; Moulay, G.; Trichet, M.; Gentil, C.; Fongy, A.; Bigot, A.; Benkhelifa-Ziyyat, S.; Lacene, E.; Thao Bui, M.; Brochier, G.; Guicheney, P.; Mouly, V.; Romero, N. B.; Coirault, C.; Bitoun, M.; Vassilopoulos, S.

10.1101/321885 — cell biology — Posted on 2018-05-14

1529 Mechanics of CaMKII-actin networks

Khan, S. M.; Molloy, J. E.; Downing, K. H.

10.1101/308353 — biophysics — Posted on 2018-05-14

1530 TGF-β1 signaling remodels TH17 cell chromatin architecture for metabolic reprogramming

Yu, X.; Wang, L.; Yao, C.; Qiu, R.; Cui, Y. G.; Dai, D.; Deng, J.; Hou, G. J.; Wang, Y.; Qian, J.; Ouyang, Y.; Qin, Y. T.; Qu, B.; Zhou, H. B.; Qian, Y. C.; Tang, Y. J.; Shen, N.

10.1101/218545 — immunology — Posted on 2018-05-14

1531 HAPDeNovo: a haplotype-based approach for filtering and phasing de novo mutations in linked read sequencing data

Zhou, X.; Batzoglou, S.; Sidow, A.; Zhang, L.

10.1101/220830 — genomics — Posted on 2018-05-14

1532 The importance and adaptive value of life history evolution for metapopulation dynamics

Bonte, D.; Bafort, Q.

10.1101/179234 — evolutionary biology — Posted on 2018-05-14

1533 On negative heritability and negative estimates of heritability

Steinsaltz, D.; Dahl, A.; Wachter, K. W.

10.1101/232843 — genetics — Posted on 2018-05-14

1534 Connecting conceptual and spatial search via a model of generalization

Wu, C. M.; Schulz, E.; Garvert, M. M.; Meder, B.; Schuck, N. W.

10.1101/258665 — animal behavior and cognition — Posted on 2018-05-14

1535 A genome-wide scan for correlated mutations detects macromolecular and chromatin interactions in Arabidopsis thaliana.

Perlaza-Jimenez, L.; Walther, D.

10.1101/279489 — genomics — Posted on 2018-05-14

1536 Mutation-rate plasticity and the germline of unicells

Aanen, D. K.; Debets, A. J. M.

10.1101/307371 — evolutionary biology — Posted on 2018-05-14

1537 Sharing is not erring: Pseudo-reciprocity in collective search

Bouhlel, I.; Wu, C. M.; Hanaki, N.; Goldstone, R. L.

10.1101/258715 — animal behavior and cognition — Posted on 2018-05-14

1538 Permanent neuroglial remodeling of the retina following infiltration of CSF1R-inhibition resistant peripheral monocytes.

Paschalis, E. I.; Lei, F.; Zhou, C.; Kapoulea, V.; Dana, R.; Chodosh, J.; Vavvas, D. G.; Dohlman, C. H.

10.1101/307900 — immunology — Posted on 2018-05-14

1539 Why cooperation is not running away

Geoffroy, F.; Baumard, N.; Andre, J.-B.

10.1101/316117 — evolutionary biology — Posted on 2018-05-14

1540 Condensin-dependent chromatin condensation represses transcription globally during quiescence

Swygert, S. G.; Kim, S.; Wu, X.; Fu, T.; Hsieh, T.-H.; Rando, O. J.; Eisenman, R. N.; Shendure, J.; McKnight, J. N.; Tsukiyama, T.

10.1101/320895 — molecular biology — Posted on 2018-05-14

1541 The effector of Hippo signaling, Taz, is required for formation of the micropyle and fertilization in zebrafish

Yi, X.; Yu, J.; Ma, C.; Dong, G.; Shi, W.; Li, L.; Luo, L.; Sampath, K.; Ruan, H.; Huang, H.

10.1101/319475 — developmental biology — Posted on 2018-05-14

1542 Dopamine and eye movement control in Parkinson’s disease: deficits in corollary discharge signals?

Railo, H.; Olkoniemi, H.; Eeronheimo, E.; Paakkonen, O.; Joutsa, J.; Kaasinen, V.

10.1101/245381 — neuroscience — Posted on 2018-05-14

1543 On the importance of accounting for intraspecific genomic relatedness in multi-species studies

Joly, S.; Flynn, D. F. B.; Wolkovich, E.

10.1101/321927 — ecology — Posted on 2018-05-14

1544 Adaptive planning in human search

Krusche, M. J. F.; Schulz, E.; Guez, A.; Speekenbrink, M.

10.1101/268938 — animal behavior and cognition — Posted on 2018-05-14

1545 Generalization and search in risky environments

Schulz, E.; Wu, C. M.; Huys, Q. J. M.; Krause, A.; Speekenbrink, M.

10.1101/227322 — animal behavior and cognition — Posted on 2018-05-14

1546 Active Function Learning

Jones, A.; Schulz, E.; Meder, B.; Ruggeri, A.

10.1101/262394 — animal behavior and cognition — Posted on 2018-05-14

1547 Discovering novel calcineurin inhibitors through quantitative mapping of protein-peptide affinity landscapes

Nguyen, H. Q.; Roy, J.; Harink, B.; Damle, N.; Baxter, B.; Brower, K.; Kortemme, T.; Thorn, K.; Cyert, M.; Fordyce, P. M.

10.1101/306779 — bioengineering — Posted on 2018-05-14

1548 Evidence of an Unusual Poly(A) RNA Signature Detected by High-throughput Chemical Mapping

Wellington-Oguri, R.; Fisker, E.; Wiley, M.; Zada, M.; Eterna Players,

10.1101/281147 — biochemistry — Posted on 2018-05-14

1549 Anthropogenic habitat alteration leads to rapid loss of adaptive variation and restoration potential in wild salmon populations

Thompson, T. Q.; Bellinger, R. M.; O'Rourke, S. M.; Prince, D. J.; Stevenson, A. E.; Rodrigues, A. T.; Sloat, M. R.; Speller, C. F.; Yang, D. Y.; Butler, V. L.; Banks, M. A.; Miller, M. R.

10.1101/310714 — genetics — Posted on 2018-05-14

1550 On the importance of accounting for intraspecific genomic relatedness in multi-species studies

Joly, S.; Wolkovich, E. M.; Flynn, D. F. B.

10.1101/321927 — ecology — Posted on 2018-05-14

1551 Support for the dominance theory in Drosophila transcriptomes

Llopart, A.; Brud, E.; Pettie, N.; Comeron, J. M.

10.1101/321455 — evolutionary biology — Posted on 2018-05-14

1552 Tyrosinase mediated humic substances synthesis by Bacillus aryabhattaiTFG5

Muniraj, I. k.; Shameer, S.; Ramachandran, P.; Uthandi, S.

10.1101/322024 — microbiology — Posted on 2018-05-14

1553 Arginine to glutamine mutation in olfactomedin-like 3 (OLFML3) is a candidate for severe goniodysgenesis and glaucoma in the Border Collie dog breed.

Pugh, C. A.; Farrell, L. L.; Carlisle, A. J.; Bush, S. J.; Trejo-Reveles, V.; Matika, O.; de Kloet, A.; Walsh, C.; Bishop, S. C.; Prendergast, J. G.; Schoenebeck, J. J.; Rainger, J.; Summers, K. M.

10.1101/321406 — genetics — Posted on 2018-05-14

1554 Prevalence and factors associated with Skilled Birth Attendants use among post-partum women in Arusha Tanzania

Mahande, M. J.; Shirima, F. L.; Komba, A. S.; Msuya, S. E.; None,

10.1101/322032 — epidemiology — Posted on 2018-05-14

1555 CytoBinning: immunological insights from multi-dimensional data

Shen, Y.; Chaigne-Delalande, B.; Lee, R.; Losert, W.

10.1101/321893 — bioinformatics — Posted on 2018-05-14

1556 Dopamine D1 receptor availability is not associated with delusional ideation measures of psychosis proneness

Matheson, G. J.; Plaven-Sigray, P.; Louzolo, A.; Borg, J.; Farde, L.; Petrovic, P.; Cervenka, S.

10.1101/321646 — neuroscience — Posted on 2018-05-14

1557 Burst Synchronization in A Scale-Free Neuronal Network with Inhibitory Spike-Timing-Dependent Plasticity

Kim, S.-Y.; Lim, W.

10.1101/321562 — neuroscience — Posted on 2018-05-14

1558 Hierarchical organization of developing HSPC in the human embryonic liver

Oberlin, E.; Zhang, Y.; Clay, D.; Mitjavilla-Garcia, M.-T.; Alama, A.; Mennesson, B.; Berseneff, H.; Louache, F.; Bennaceur-Griscelli, A.

10.1101/321877 — developmental biology — Posted on 2018-05-14

1559 Somatic Mutations Render Human Exome and Pathogen DNA more Similar

Tchamkerten, A.; Cristescu, R.; Ebrahimzadeh, E.; Tse, D.; Engler, M.

10.1101/322016 — cancer biology — Posted on 2018-05-14

1560 Identification of regulatory elements from nascent transcription using dREG

Wang, Z.; Chu, T.; Choate, L. A.; Danko, C. G.

10.1101/321539 — bioinformatics — Posted on 2018-05-14

1561 Discovery of New CDK8 ligands with a Novel Virtual Drug Screening Tool

Chen, W.; Ren, X.; Chang, C.-e.

10.1101/321521 — bioinformatics — Posted on 2018-05-14

1562 Recurrent connections between CA2 pyramidal cells

Okamoto, K.; Ikegaya, Y.

10.1101/321513 — neuroscience — Posted on 2018-05-14

1563 Effect of Inhibitory Spike-Timing-Dependent Plasticity on Fast Sparsely Synchronized Rhythms in A Small-World Neuronal Network

Kim, S.-Y.; Lim, W.

10.1101/321547 — neuroscience — Posted on 2018-05-14

1564 Axon-seq decodes the motor axon transcriptome and its modulation in response to ALS

Nijssen, J.; Aguila Benitez, J.; Hoogstraaten, R.; Kee, N.; Hedlund, E.

10.1101/321596 — neuroscience — Posted on 2018-05-14

1565 Reduced but not Enhanced Default Mode Network Functional Connectivity in Major Depressive Disorder: Evidence from 25 Cohorts in the REST-meta-MDD Project

Yan, C.-G.; Li, L.; Chen, X.; Castellanos, F. X.; Bai, F.; Bai, T.-J.; Bo, Q.-J.; Chen, G.-M.; Chen, N.-X.; Chen, W.; Cheng, C.; Cheng, Y.-Q.; Cui, X.-L.; Duan, J.; Fang, Y.-R.; Gong, Q.-Y.; Guo, W.-B.; Hou, Z.-H.; Hu, L.; Kuang, L.; Li, F.; Li, K.-M.; Li, T.; Liu, Y.-S.; Liu, Z.-N.; Long, Y.-C.; Luo, Q.-H.; Meng, H.-Q.; Peng, D.-H.; Qiu, H.-T.; Qiu, J.; Shen, Y.-D.; Shi, Y.-S.; Si, T.-M.; Wang, C.-Y.; Wang, F.; Wang, K.; Wang, L.; Wang, X.; Wang, Y.; Wu, X.-P.; Wu, X.-R.; Xie, G.-R.; Xie, H.-Y.; Xie, P.; Xu, X.-F.; Yang, H.; Yang, J.; Yao, J.-S.; Yao, S.-Q.; Ye, Q.; Yin, Y.-Y.; Yuan, Y.-G.; Z

10.1101/321745 — neuroscience — Posted on 2018-05-14

1566 Patient-specific detection of cancer genes reveals recurrently perturbed processes in esophageal adenocarcinoma

Mourikis, T.; Benedetti, L.; Foxall, E.; Perner, J.; Cereda, M.; Lagergren, J.; Howell, M.; Yau, C.; Fitzgerald, R.; Scaffidi, P.; Ciccarelli, F. D.

10.1101/321612 — cancer biology — Posted on 2018-05-14

1567 GraphSeq: Accelerating String Graph Construction for De Novo Assembly on Spark

Su, C.-T.; Chang, M.-T.; Cheng, Y.-C.; Li, Y.-L.; Wang, Y.-T.

10.1101/321729 — bioinformatics — Posted on 2018-05-14

1568 Generally applicable transcriptome-wide analysis of translational efficiency using anota2seq

Oertlin, C.; Lorent, J.; Gandin, V.; Murie, C.; Masvidal, L.; Cargnello, M.; Furic, L.; Topisirovic, I.; Larsson, O.

10.1101/106922 — bioinformatics — Posted on 2018-05-14

1569 Highly diverged novel subunit composition of apicomplexan F-type ATP synthase identified from Toxoplasma gondii

Salunke, R.; Mourier, T.; Banerjee, M.; Pain, A.; Shanmugam, D.

10.1101/321620 — biochemistry — Posted on 2018-05-14

1570 Learning list concepts through program induction

Rule, J.; Schulz, E.; Piantadosi, S. T.; Tenenbaum, J. B.

10.1101/321505 — animal behavior and cognition — Posted on 2018-05-14

1571 Photoperiod sensing of the circadian clock is controlled by ELF3 and GI

Anwer, U.; Davis, A.; Davis, S. J.; Quint, M.

10.1101/321794 — plant biology — Posted on 2018-05-14

1572 The capacity for correlated semantic memories in the cortex

Boboeva, V.; Brasselet, R.; Treves, A.

10.1101/321703 — neuroscience — Posted on 2018-05-14

1573 Word and sentence embedding tools to measure semantic similarity of Gene Ontology terms by their definitions

Duong, D.; Ahmad, W. U.; Eskin, E.; Chang, K.-W.; Li, J. J.

10.1101/103648 — bioinformatics — Posted on 2018-05-14

1574 A large-scale analysis of bioinformatics code on GitHub

Russell, P. H.; Johnson, R. L.; Ananthan, S.; Harnke, B.; Carlson, N. E.

10.1101/321919 — bioinformatics — Posted on 2018-05-14

1575 Assessment of urinary pharmacodynamic profiles of faropenem against extended-spectrum β-lactamase-producing Escherichia coli with canine ex vivo modeling

Harada, K.; Shimizu, T.; Miyashita, N.; Hikasa, Y.

10.1101/321836 — microbiology — Posted on 2018-05-14

1576 Replication fork collapse at a protein-DNA roadblock leads to fork reversal, promoted by the RecQ helicase

Weaver, G.; Mettrick, K.; Corocher, T.-A.; Graham, A.; Grainge, I.; No,

10.1101/321869 — microbiology — Posted on 2018-05-14

1577 The complex geography of domestication of the African rice Oryza glaberrima

Choi, J. Y.; Dorph, K.; Purugganan, M. D.

10.1101/321851 — evolutionary biology — Posted on 2018-05-14

1578 Prenatal growth map of the mouse knee joint by mean of deformable registration technique

Giorgi, M.; Sotiriou, V.; Fanchini, N.; Conigliaro, S.; Bignardi, C.; Nowlan, N. C.; Dall'Ara, E.

10.1101/321828 — bioengineering — Posted on 2018-05-14

1579 Automating multimodal microscopy with NanoJ-Fluidics

Almada, P.; Pereira, P.; Culley, S.; Caillol, G.; Boroni-Rueda, F.; Dix, C. L.; Laine, R. F.; Charras, G.; Baum, B.; Leterrier, C.; Henriques, R.

10.1101/320416 — cell biology — Posted on 2018-05-14

1580 Chromatin run-on reveals the transcriptional etiology of glioblastoma multiforme

Chu, T.; Rice, E. J.; Booth, G. T.; Salamanca, H. H.; Wang, Z.; Core, L. J.; Longo, S. L.; Corona, R. J.; Chin, L. S.; Lis, J. T.; Kwak, H.; Danko, C.

10.1101/185991 — genomics — Posted on 2018-05-14

1581 Effects of Attentional Bias Modification on Residual Symptoms in depression. A Randomized Controlled Trial.

Jonassen, R.; Harmer, C. J.; Hilland, E.; Maglanoc, L. A.; Kraft, B.; Browning, M.; Stiles, T. C.; Haaland, V. O.; Berge, T.; Landro, N. I.

10.1101/318279 — clinical trials — Posted on 2018-05-14

1582 Systematic evaluation of isoform function in literature reports of alternative splicing

Bhuiyan, S.; Ly, S.; Phan, M.; Huntington, B.; Hogan, E.; Liu, C. C.; Liu, J.; Pavlidis, P.

10.1101/303412 — molecular biology — Posted on 2018-05-14

1583 The origin of the odorant receptor gene family in insects

Brand, P.; Robertson, H. M.; Lin, W.; Pothula, R.; Klingeman, W. E.; Jurat-Fuentes, J. L.; Johnson, B. R.

10.1101/259424 — bioinformatics — Posted on 2018-05-14

1584 Recurrent Auto-Encoding Drift Diffusion Model

Moens, V.; Zenon, A.

10.1101/220517 — neuroscience — Posted on 2018-05-14

1585 A functional different immune capacity in cattle is associated with higher mastitis incidence

Lutterberg, K.; Kleinwort, K. J. H.; Hobmaier, B. F.; Hauck, S. M.; Nueske, S.; Scholz, A. M.; Deeg, C. A.

10.1101/311316 — immunology — Posted on 2018-05-14

1586 Multifunctional RNA-binding proteins mediate ecdysone-dependent germline stem cell self-renewal in Drosophila

Finger, D. S.; Holt, V. V.; Ables, E. T.

10.1101/321109 — developmental biology — Posted on 2018-05-14

1587 Optogenetic dissection of mitotic spindle positioning in vivo

Fielmich, L.-E.; Schmidt, R.; Dickinson, D. J.; Goldstein, B.; Akhmanova, A.; van den Heuvel, S.

10.1101/319772 — cell biology — Posted on 2018-05-14

1588 LFMM 2.0: Latent factor models for confounder adjustment in genome and epigenome-wide association studies

Caye, K.; Jumentier, B.; Francois, O.

10.1101/255893 — bioinformatics — Posted on 2018-05-14

1589 Deciphering the metabolic perturbation in hepatic alveolar echinococcosis: a 1H NMR-based metabolomics study

Lin, C.; Zhang, L.; Wei, Z.; Cheng, K.-K.; Shen, G.; Dong, J.; Chen, Z.; Fan, H.

10.1101/320333 — systems biology — Posted on 2018-05-14

1590 IP3R2-independent Ca2+ release from the endoplasmic reticulum in astrocytes

Okubo, Y.; Kanemaru, K.; Suzuki, J.; Kobayashi, K.; Hirose, K.; Iino, M.

10.1101/321042 — neuroscience — Posted on 2018-05-14

1591 Escherichia coli ZipA organizes FtsZ polymers into dynamic ring-like protofilament structures

Margolin, W.; Krupka, M.; Sobrinos-Sanguino, M.; Jimenez, M.; Rivas, G.

10.1101/319228 — microbiology — Posted on 2018-05-14

1592 Extracellular Vesicle-delivered Bone Morphogenetic Proteins: A novel paracrine mechanism during embryonic development

Draebing, T.; Heigwer, J.; Juergensen, L.; Katus, H. A.; Hassel, D.

10.1101/321356 — developmental biology — Posted on 2018-05-14

1593 PP2A-Rts1 enforces a proportional relationship between cell size and growth rate

Leitao, R. M. M.; Pham, A.; Okobi, Q.; Kellogg, D.

10.1101/321281 — cell biology — Posted on 2018-05-14

1594 Schizophrenia-related cognitive dysfunction in the Cyclin-D2 knockout mouse model of ventral hippocampal hyperactivity

Grimm, C. M.; Aksamaz, S.; Schulz, S.; Teutsch, J.; Sicinski, P.; Liss, B.; Kaetzel, D.

10.1101/301226 — animal behavior and cognition — Posted on 2018-05-14

1595 Long-distance communication in synthetic bacterial consortia through active signal propagation

Parkin, J. M.; Murray, R. M.

10.1101/321307 — synthetic biology — Posted on 2018-05-14

1596 Dissection of protein cargo of citrus fruit juice sac cells-derived vesicles reveals heterogeneous transport and extracellular vesicles subpopulations

Pocsfalvi, G.; Turiak, L.; Ambrosone, A.; Del Gaudio, P.; Puska, G.; Fiume, I.; Silvestre, T.; Vekey, K.

10.1101/321240 — plant biology — Posted on 2018-05-14

1597 Two-photon imaging induces brain heating and calcium microdomain hyper-activity in cortical astrocytes

Schmidt, E. M.; Oheim, M.

10.1101/321091 — neuroscience — Posted on 2018-05-14

1598 Apparent Motion Perception in the Praying Mantis: Psychophysics and Modelling

Tarawneh, G.; Jones, L.; Nityananda, V.; Rosner, R.; Rind, C.; Read, J.

10.1101/320606 — neuroscience — Posted on 2018-05-14

1599 A map of climate change-driven natural selection in Arabidopsis thaliana

Exposito-Alonso, M.; Burbano, H. A.; Bossdorf, O.; Nielsen, R.; Weigel, D.

10.1101/321133 — evolutionary biology — Posted on 2018-05-14

1600 Environmental drivers of ranavirus in free living amphibians in constructed ponds.

Youker-Smith, T. E.; Boersch-Supan, P. H.; Whipps, C. M.; Ryan, S. J.

10.1101/321299 — ecology — Posted on 2018-05-14

1601 The osteogenic potential of the neural crest lineage may contribute to craniosynostosis

Doro, D.; Liu, A.; Grigoriadis, A. E.; Liu, K. J.

10.1101/321117 — developmental biology — Posted on 2018-05-14

1602 Enzymatic evolution driven by entropy production

Arango-Restrepo, A.; Rubi, J. M.; Barragan, D.

10.1101/319814 — biophysics — Posted on 2018-05-14

1603 Putting hands to rest: efficient deep CNN-RNN architecture for chemical named entity recognition with no hand-crafted rules.

Korvigo, I.; Holmatov, M.; Zaikovskii, A.; Skoblov, M.

10.1101/321224 — bioinformatics — Posted on 2018-05-14

1604 Nuclear Respiratory Factor 1 (NRF-1) Controls the Activity Dependent Transcription of the GABA-A Receptor Beta 1 Subunit Gene in Neurons

Li, Z.; Cogswell, M.; Hixson, K.; Brooks-Kayal, A. R.; Russek, S. J.

10.1101/321257 — neuroscience — Posted on 2018-05-14

1605 Self-regulation of the Dopaminergic Reward Circuit in Cocaine Users with Mental Imagery and Neurofeedback

Kirschner, M.; Sladky, R.; Haugg, A.; Staempfli, P.; Jehli, E.; Hodel, M.; Engeli, E.; Hoesli, S.; Baumgartner, M. R.; Sulzer, J.; Huys, Q. J. M.; Seifritz, E.; Quednow, B. B.; Scharnowski, F.; Herdener, M.

10.1101/321166 — neuroscience — Posted on 2018-05-14

1606 Psychometric properties of the PHQ-9 depression scale in people with multiple sclerosis: a systematic review

Patrick, S.; Connick, P.

10.1101/321653 — neuroscience — Posted on 2018-05-14

1607 Characteristics of the mitochondrial and cellular uptake of MPP+, as probed by the fluorescent mimic, 4′I-MPP+

Mapa, M. S. T.; Le, V. Q.; Wimalasena, K.; N/A,

10.1101/321687 — neuroscience — Posted on 2018-05-14

1608 Gelatinase B/matrix metalloproteinase-9 is a phase-specific effector molecule, independent from Fas, in experimental autoimmune encephalomyelitis

Berzal, E. U.; Berghmans, N.; Boon, L.; Martens, E.; Vandooren, J.; Cauwe, B.; Thijs, G.; Proost, P.; Van Damme, J.; Opdenakker, G.

10.1101/321661 — immunology — Posted on 2018-05-14

1609 Barriers and incentives for conducting research amongst the Ophthalmologists in Sub- Sahara Africa

Dhalla, K.; Guirguis, M.

10.1101/321679 — epidemiology — Posted on 2018-05-14

1610 Versatile in vivo genome editing with the prototypical Streptococcus thermophilus CRISPR1-Cas9 system

Carter, S.; Agudelo, D.; Duringer, A.; Loehr, J.; Doyon, Y.

10.1101/321208 — molecular biology — Posted on 2018-05-14

1611 Translational control through differential ribosome pausing during amino acid limitation in mammalian cells

Darnell, A. M.; Subramaniam, A. R.; O'Shea, E. K.

10.1101/321448 — cell biology — Posted on 2018-05-14

1612 Brief Freezing Steps Lead to Robust Immunofluorescence in Drosophila Larval Brains

Buckley, D.; Thapa, A.; Nguyen, M.; Blankinship, E.; Williamson, D.; Cloud, V.; Mohan, R. D.

10.1101/319913 — cell biology — Posted on 2018-05-13

1613 Evaluation of Two Sigma Transwab(R) Systems for Maintenance of Viability of Pathogenic Candida spp. Using the Clinical and Laboratory Standards Institute M40-2 A2 Standard

Elcocks, E.; Adukwu, E. C.

10.1101/321018 — microbiology — Posted on 2018-05-13

1614 Acute-phase CD4+ T cell responses targeting invariant viral regions are associated with control of live-attenuated simian immunodeficiency virus

Sutton, M. S.; Ellis-Connell, A.; Moriarty, R. V.; Balgeman, A. J.; Gellerup, D.; Barry, G. L.; Weiler, A. M.; Friedrich, T. C.; O'Connor, S. L.

10.1101/321000 — immunology — Posted on 2018-05-13

1615 Monitoring changes in the Gene Ontology and their impact on genomic data analysis

Jacobson, M.; Sedeno-Cortes, A. E.; Pavlidis, P.

10.1101/320861 — bioinformatics — Posted on 2018-05-13

1616 Deep Bidirectional Recurrent Neural Networks as End-To-End Models for Smoking Status Extraction from Clinical Notes in Spanish.

Esteban, S.; Rodriguez Tablado, M.; Peper, F. E.; Terrasa, S. A.; Kopitowski, K. S.

10.1101/320846 — bioinformatics — Posted on 2018-05-13

1617 A high-density carbon fiber neural recording array technology

Massey, T. L.; Santacruz, S. R.; Hou, J. F.; Pister, K. S.; Carmena, J. M.; Maharbiz, M. M.

10.1101/320937 — bioengineering — Posted on 2018-05-13

1618 Plant trichomes and a single gene GLABRA1 contribute to insect community composition on field-grown Arabidopsis thaliana

Sato, Y.; Shimizu-Inatsugi, R.; Yamazaki, M.; Shimizu, K. K.; Nagano, A. J.

10.1101/320903 — plant biology — Posted on 2018-05-13

1619 Unattended but actively stored: EEG dynamics reveal a dissociation between selective attention and storage in working memory

Gunseli, E.; Fahrenfort, J. J.; van Moorselaar, D.; Daoultzis, K. C. C.; Meeter, M.; Olivers, C. N. L.

10.1101/320952 — neuroscience — Posted on 2018-05-13

1620 Topological Skeletonization and Tree-Summarization of Neurons Using Discrete Morse Theory

Wang, S.; Li, X.; Mitra, P.; Wang, Y.

10.1101/321489 — neuroscience — Posted on 2018-05-13

1621 Bifunctional enzyme SpoT is involved in biofilm formation of Helicobacter pylori with multidrug resistance by upregulating efflux pump Hp1174 (gluP)

Sun, Y.; Ge, X.; Cai, Y.; Chen, Z.; Gao, S.; Geng, X.; Li, Y.; Li, Y.; Jia, J.

10.1101/321026 — microbiology — Posted on 2018-05-13

1622 Extracellular HBV RNAs are heterogeneous in length and circulate as virions and capsid-antibody-complexes in chronic hepatitis B patients

Bai, L.; Zhang, X.; Li, W.; Wu, M.; Liu, J.; Kozlowski, M.; Chen, L.; Zhang, J.; Huang, Y.; Yuan, Z.

10.1101/320994 — microbiology — Posted on 2018-05-13

1623 Palaeobiological inferences based on long bone epiphyseal and diaphyseal structure - the forelimb of xenarthrans (Mammalia)

Amson, E.; Nyakatura, J. A.

10.1101/318121 — paleontology — Posted on 2018-05-13

1624 Does internal metabolic state determine human motor coordination strategy?

Taylor, S. V.; Faisal, A. A.

10.1101/312454 — neuroscience — Posted on 2018-05-13

1625 Diversity of active viral infections within the Sphagnum microbiome

Stough, J. M. A.; Kolton, M.; Kostka, J. E.; Weston, D. J.; Pelletier, D. A.; Wilhelm, S. W.

10.1101/320002 — microbiology — Posted on 2018-05-13

1626 Site specific target binding controls RNA cleavage efficiency by the Kaposi’s sarcoma-associated herpesvirus endonuclease SOX

Mendez, A. S.; Vogt, C.; Bohne, J.; Glaunsinger, B. A.

10.1101/320929 — microbiology — Posted on 2018-05-13

1627 Flow regulation associated with decreased genetic health of a river-breeding frog species

Peek, R. A.; O'Rourke, S. M.; Miller, M. R.

10.1101/316604 — ecology — Posted on 2018-05-13

1628 MS-PyCloud: An open-source, cloud computing-based pipeline for LC-MS/MS data analysis

Chen, L.; Zhang, B.; Schnaubelt, M.; Shah, P.; Aiyetan, P.; Chan, D.; Zhang, H.; Zhang, Z.

10.1101/320887 — bioinformatics — Posted on 2018-05-13

1629 RAVEN 2.0: a versatile platform for metabolic network reconstruction and a case study on Streptomyces coelicolor

Wang, H.; Marcisauskas, S.; Sanchez, B. J.; Domenzain, I.; Hermansson, D.; Agren, R.; Nielsen, J.; Kerkhoven, E. J.

10.1101/321067 — systems biology — Posted on 2018-05-13

1630 Temperature response of Rubisco kinetics in Arabidopsis thaliana: thermal breakpoints and implications for reaction mechanisms

Boyd, R.; Cavanagh, A.; Kubien, D.; Cousins, A.

10.1101/320879 — plant biology — Posted on 2018-05-13

1631 On the Biological Signalling, Information and Estimation Limits of Birth Processes

Parag, K. V.

10.1101/319889 — systems biology — Posted on 2018-05-13

1632 GLMdenoise improves multivariate pattern analysis of fMRI data

Charest, I.; Kriegeskorte, N.; Kay, K.

10.1101/320838 — neuroscience — Posted on 2018-05-13

1633 A graph-based algorithm for RNA-seq data normalization

Tran, D.-T.; Bhaskara, A.; Might, M.; Balagurunathan, K.

10.1101/321471 — bioinformatics — Posted on 2018-05-13

1634 Guppies prefer to follow large (robot) leaders irrespective of own size

Bierbach, D.; Moenck, H. J.; Lukas, J.; Habedank, M.; Romanczuk, P.; Landgraf, T.; Krause, J.

10.1101/320911 — animal behavior and cognition — Posted on 2018-05-13

1635 Population coding of valence in the basolateral amygdala

Zhang, X.; Li, B.

10.1101/321232 — neuroscience — Posted on 2018-05-13

1636 Excitable dynamics of NREM sleep: a unifying model for neocortex and hippocampus

Levenstein, D.; Buzsaki, G.; Rinzel, J.

10.1101/312587 — neuroscience — Posted on 2018-05-12

1637 Innate potential of random genetic oligomer pools for recombination

Mutschler, H.; Taylor, A. I.; Lightowlers, A.; Houlihan, G.; Abramov, M.; Herdewijn, P.; Holliger, P.

10.1101/320499 — biochemistry — Posted on 2018-05-12

1638 Activation of the unfolded protein response and inhibition of translation initiation during coronavirus infection

Irigoyen, N.; Franaszek, K.; Dinan, A. M.; Moore, N. A.; Siddell, S. G.; Brierley, I.; Firth, A. E.

10.1101/292979 — microbiology — Posted on 2018-05-12

1639 Countries’ geographic latitude and their human populations’ cholesterol and blood pressure

Liu, Y.; Brook, R. D.; Liu, X.; Byrd, J. B.

10.1101/308726 — epidemiology — Posted on 2018-05-12

1640 Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types

Dentro, S. C.; Leshchiner, I.; Haase, K.; Tarabichi, M.; Wintersinger, J.; Deshwar, A. G.; Yu, K.; Rubanova, Y.; Macintyre, G.; Vazquez-Garcia, I.; Kleinheinz, K.; Livitz, D. G.; Malikic, S.; Donmez, N.; Sengupta, S.; Demeulemeester, J.; Anur, P.; Jolly, C.; Cmero, M.; Rosebrock, D.; Schumacher, S.; Fan, Y.; Fittall, M.; Drews, R. M.; Yao, X.; Lee, J.; Schlesner, M.; Zhu, H.; Adams, D. J.; Getz, G.; Boutros, P. C.; Imielinski, M.; Beroukhim, R.; Sahinalp, S. C.; Ji, Y.; Peifer, M.; Martincorena, I.; Markowetz, F.; Mustonen, V.; Yuan, K.; Gerstung, M.; Spellman, P. T.; Wang, W.; Morris, Q. D.;

10.1101/312041 — cancer biology — Posted on 2018-05-12

1641 Predicting functional networks from region connectivity profiles in task-based versus resting-state fMRI data

Rasero, J.; Aerts, H.; Cortes, J. M.; Stramaglia, S.; Marinazzo, D.

10.1101/259077 — neuroscience — Posted on 2018-05-12

1642 Humans incorporate attention-dependent uncertainty into perceptual decisions and confidence

Denison, R. N.; Adler, W. T.; Carrasco, M.; Ma, W. J.

10.1101/175075 — neuroscience — Posted on 2018-05-12

1643 The JNK signaling links the CNS architectural organization to motor coordination in the Drosophila embryo

Karkali, K.; Panayotou, G.; Saunders, T. E.; Martin-Blanco, E.

10.1101/092486 — developmental biology — Posted on 2018-05-12

Wang, S.; MacLean, A.; Nie, Q.

10.1101/168922 — bioinformatics — Posted on 2018-05-12

1645 Synchronized mesenchymal cell polarization and differentiation shape the formation of the murine trachea and esophagus

Kishimoto, K.; Tamura, M.; Nishita, M.; Minami, Y.; Yamaoka, A.; Abe, T.; Shigeta, M.; Morimoto, M.

10.1101/320168 — developmental biology — Posted on 2018-05-12

1646 Condensin-dependent chromatin condensation represses transcription globally during quiescence

Swygert, S. G.; Kim, S.; Wu, X.; Fu, T.; Hsieh, T.-H.; Rando, O. J.; Eisenman, R. N.; Schendure, J.; McKnight, J. N.; Tsukiyama, T.

10.1101/320895 — molecular biology — Posted on 2018-05-12

1647 Evaluating the information content of shallow shotgun metagenomics

Hillmann, B.; Al-Ghalith, G. A.; Shields-Cutler, R.; Zhu, Q.; Gohl, D.; Beckman, K. B.; Knight, R.; Knights, D.

10.1101/320986 — genomics — Posted on 2018-05-12

1648 PKMζ in the nucleus accumbens acts to dampen cocaine seeking

McGrath, A. G.; Lenz, J. D.; Briand, L. A.

10.1101/320945 — neuroscience — Posted on 2018-05-12

1649 ZAG-1/ZEB and EGL-44/TEAD form a negative feedback loop to safeguard the choice of cell fate

Zheng, C.; Jin, F. Q.; Trippe, B. L.; Chalfie, M.

10.1101/320978 — developmental biology — Posted on 2018-05-12

1650 Measurement of infection efficiency of a major wheat pathogen using time-resolved imaging of disease progress

Karisto, P.; Dora, S.; Mikaberidze, A.

10.1101/318204 — epidemiology — Posted on 2018-05-11

1651 Spatial gene-by-environment mapping for schizophrenia reveals locale of upbringing effects beyond urban-rural differences

Fan, C. C.; McGrath, J. J.; Appadurai, V.; Buil, A.; Gandal, M. J.; Schork, A. J.; Mortensen, P. B.; Agerbo, E.; Geschwind, S. A.; Geschwind, D.; Werge, T.; Thompson, W. K.; Pedersen, C. B.

10.1101/315820 — epidemiology — Posted on 2018-05-11

1652 Equivalence of the Erlang SEIR epidemic model and the renewal equation

Champredon, D.; Dushoff, J.; Earn, D.

10.1101/319574 — epidemiology — Posted on 2018-05-11

1653 Telomeres as integrative markers of exposure to stress and adversity: A systematic review and meta-analysis

Pepper, G. V.; Bateson, M.; Nettle, D.

10.1101/320150 — epidemiology — Posted on 2018-05-11

1654 Full Rescue of F508del-CFTR Processing and Function by CFTR Modulators can be Achieved by Removal of Two Unique Regulatory Regions

Uliyakina, I.; Da Paula, A. C.; Afonso, S. C.; Lobo, M. J.; Felicio, V.; Botelho, H. M.; Farinha, C. M.; Amaral, M. D.

10.1101/320630 — biochemistry — Posted on 2018-05-11

1655 3D protein structure from genetic epistasis experiments

Rollins, N. J.; Brock, K. P.; Poelwijk, F. J.; Stiffler, M. A.; Gauthier, N. P.; Sander, C.; Marks, D. S.

10.1101/320721 — systems biology — Posted on 2018-05-11

1656 Superoanterior Fasciculus (SAF): Novel fiber tract revealed by diffusion MRI fiber tractography

David, S.; Heemskerk, A. M.; Corrivetti, F.; Thiebaut de Schotten, M.; Sarubbo, S.; Petit, L.; Viergever, M. A.; Jones, D. K.; Mandonnet, E.; Axer, H.; Evans, J.; Paus, T.; Leemans, A.

10.1101/319863 — neuroscience — Posted on 2018-05-11

1657 Somatosensory Perceptual Training Enhances Motor Learning by Observing

McGregor, H.; Cashaback, J.; Gribble, P.

10.1101/319905 — neuroscience — Posted on 2018-05-11

1658 Arterial smooth muscle cell PKD2 (TRPP1) channels control systemic blood pressure

Bulley, S.; Fernandez-Pena, C.; Hasan, R.; Leo, M. D.; Muralidharan, P.; Mackay, C. E.; Evanson, K. W.; Burris, S. K.; Wang, Q.; Kuruvilla, K. P.; Jaggar, J. H.

10.1101/320200 — neuroscience — Posted on 2018-05-11

1659 A preliminary study of the calcification reason of pit mud

chen, B.; yan, y.; wang, d.

10.1101/319996 — microbiology — Posted on 2018-05-11

1660 Large-scale RNA editing profiling in different adult chicken tissues

Bakhtiarizadeh, M. R.; Shafiei, H.; Salehi, A.

10.1101/319871 — genetics — Posted on 2018-05-11

1661 In Vitro Growth Effects of Morphine and Naloxone on Various Head and Neck Squamous Cell Cancer Cell Lines

Denton, S. R.; Padia, R.; Shea, J. E.; Buchmann, L. O.; Stoddard, G. J.; Firpo, M. A.; Call, T. R.

10.1101/320457 — cancer biology — Posted on 2018-05-11

1662 Apparent Motion Perception in the Praying Mantis: Psychophysics and Modelling

Tarawneh, G.; Jones, L.; Nityananda, V.; Rosner, R.; Rind, C.; Read, J.

10.1101/320606 — neuroscience — Posted on 2018-05-11

1663 Poor coherence in older people’s speech is explained by impaired semantic and executive processes

Hoffman, P.; Loginova, E.; Russell, A.

10.1101/320473 — neuroscience — Posted on 2018-05-11

1664 Synchronization dependent on spatial structures of a mesoscopic whole-brain network

Choi, H.; Mihalas, S.

10.1101/319830 — neuroscience — Posted on 2018-05-11

1665 Post-reactivation new learning impairs and updates human episodic memory through dissociable processes

Zhu, Z.; Wang, Y.; Jia, J.; Huang, L.; Rao, Y.; Wu, Y.

10.1101/320101 — neuroscience — Posted on 2018-05-11

1666 Identification of lead compounds targeting the dTDP-L-rhamnose biosynthesis pathway using Streptococcus pyogenes

van der Beek, S. L.; Zorzoli, A.; Canak, E.; Chapman, R. N.; Meyer, B. H.; Boons, G.-J. P. H.; Dorfmueller, H. C.; van Sorge, N. M.

10.1101/312157 — microbiology — Posted on 2018-05-11

1667 Identification of a divergent cytochrome c oxidase complex in the mitochondrial proteome of Toxoplasma gondii

Seidi, A.; Muellner-Wong, L. S.; Rajendran, E.; Tjhin, E. T.; Dagley, L.; Aw, V. Y. T.; Webb, A.; Tonkin, C. J.; van Dooren, G.

10.1101/320184 — microbiology — Posted on 2018-05-11

1668 A hypothetical new role for single-stranded DNA binding proteins in the immune system

Vijay, N.; Chande, A.

10.1101/320408 — immunology — Posted on 2018-05-11

1669 Stiffness Sensing and Cell Motility: Durotaxis and Contact Guidance

Feng, J.; Levine, H.; Mao, X.; Sander, L. M.

10.1101/320705 — biophysics — Posted on 2018-05-11

1670 Chronic in vivo optogenetic stimulation modulates Hebbian plasticity and spine density in the mouse hippocampus

Moulin, T. C.; Rayee, D.; Maia, R. G.; Freitas, J. W. R.; Lima, R. V.; Petiz, L. L.; Amaral, O. B.; Leao, R. N.

10.1101/320507 — neuroscience — Posted on 2018-05-11

1671 Detection and quantification of the heterogeneity of S. aureus bacterial populations to identify antibiotic-induced persistence

Hassan, M. H.; Butler, M. S.; Ranzoni, A.; Cooper, M. A.

10.1101/320093 — microbiology — Posted on 2018-05-11

1672 Changes in lipid and proteome composition accompany growth of Bacillus subterraneus MITOT1 under supercritical CO2 and may promote acclimation to associated stresses.

Peet, K. C.; Ravindra, K. C.; Wishnok, J. S.; Summons, R. E.; Thompson, J. R.

10.1101/320424 — microbiology — Posted on 2018-05-11

1673 RNA polymerase organizes into distinct spatial clusters independent of ribosomal RNA transcription in E. coli

Weng, X.; Bohrer, C. H.; Bettridge, K.; Lagda, A. C.; Cagliero, C.; Jin, D. J.; Xiao, J.

10.1101/320481 — microbiology — Posted on 2018-05-11

1674 Intersection of phosphate transport, oxidative stress and TOR signalling in Candida albicans virulence

Liu, N.-N.; Uppuluri, P.; Broggi, A.; Besold, A.; Ryman, K.; Kambara, H.; Solis, N.; Lorenz, V.; Qi, W.; Acosta Zaldivar, M.; Emami, S. N.; Bao, B.; An, D.; Bonilla, F.; Sola-Visner, M.; Filler, S.; Luo, H. R.; Engstrom, Y.; Ljungdahl, P. O.; Culotta, V. C.; Zanoni, I.; Lopez-Ribot, J. L.; Koehler, J. R.

10.1101/317933 — microbiology — Posted on 2018-05-11

1675 Single-cell transcriptome profiling of the Ciona larval brain

Sharma, S.; Wang, W.; Stolfi, A.

10.1101/319327 — developmental biology — Posted on 2018-05-11

1676 Using set theory to reduce redundancy in pathway sets

Stoney, R. A.; Robertson, D. L.; Nenadic, G.; Schwartz, J.-M.

10.1101/319731 — bioinformatics — Posted on 2018-05-11

1677 Innate potential of random genetic oligomer pools for recombination

Mutschler, H.; Taylor, A. I.; Lightowler, A.; Houlihan, G.; Abramov, M.; Herdewijn, P.; Holliger, P.

10.1101/320499 — biochemistry — Posted on 2018-05-11

1678 Oculomotor capture reveals trial-by-trial neural correlates of attentional guidance by contents of visual working memory

Beck, V. M.; Vickery, T. J.

10.1101/320259 — neuroscience — Posted on 2018-05-11

1679 Recalibration of path integration in hippocampal place cells

Jayakumar, R. P.; Madhav, M. S.; Savelli, F.; Blair, H. T.; Cowan, N. J.; Knierim, J. J.

10.1101/319269 — neuroscience — Posted on 2018-05-11

1680 Robust associative learning is sufficient to explain structural and dynamical properties of local cortical circuits

Zhang, D.; Zhang, C.; Stepanyants, A.

10.1101/320432 — neuroscience — Posted on 2018-05-11

1681 Global connectivity and function of descending spinal input revealed by 3D microscopy and retrograde transduction

Wang, Z.; Maunze, B.; Wang, Y.; Tsoulfas, P.; Blackmore, M. G.

10.1101/314237 — neuroscience — Posted on 2018-05-11

1682 Identification and Characterization of Human Monoclonal Antibodies for Immunoprophylaxis Against Enterotoxigenic Escherichia coli Infection

Giuntini, S.; Stoppato, M.; Sedic, M.; Ejemel, M.; Pondish, J. R.; Wisheart, D.; Schiller, Z. A.; Thomas, W. D.; Barry, E.; Cavacini, L.; Klempner, M.; Wang, Y.

10.1101/320044 — microbiology — Posted on 2018-05-11

1683 High-resolution ISR amplicon sequencing reveals personalized oral microbiome

Mukherjee, C.; Beall, C. J.; Griffen, A. L.; Leys, E. J.

10.1101/320564 — microbiology — Posted on 2018-05-11

1684 First report on Bacterial Diversity of Potable Spring water of Indian Himalayan Region

Singh, A. K.; Das, S.; Singh, S.; Gajamer, V. R.; Pradhan, N.; Lepcha, Y. D.; Tiwari, H. K.

10.1101/320275 — microbiology — Posted on 2018-05-11

1685 msCRUSH: fast tandem mass spectra clustering using locality sensitive hashing

Wang, L.; Li, S.; Tang, H.

10.1101/308627 — bioinformatics — Posted on 2018-05-11

1686 Advanced Graph Traversal used in Protein Interactions Network and Systems Biology

Rameshwari, R.; Chapadgaonkar, S.; Prasad, T. V.

10.1101/319624 — bioinformatics — Posted on 2018-05-11

1687 Label propagation defines signaling networks associated with recurrently mutated cancer genes

Cakir, M.; Mukherjee, S.; Wood, K. C.

10.1101/320770 — bioinformatics — Posted on 2018-05-11

1688 Efficacy and acceptability of non-invasive brain stimulation for the treatment of adult unipolar and bipolar depression: A systematic review and meta-analysis of randomised sham controlled trials

Mutz, J.; Edgcumbe, D. R.; Brunoni, A. R.; Fu, C. H. Y.

10.1101/287656 — neuroscience — Posted on 2018-05-11

1689 Loss of YAP/TAZ impaired the proliferation and differentiation ability of neural progenitor cells

Kong, S.

10.1101/296053 — neuroscience — Posted on 2018-05-11

1690 The interplay between small RNA pathways shapes chromatin landscape in C. elegans

Gushchanskaia, E.; Esse, R.; Ma, Q.; Lau, N.; Grishok, A.

10.1101/320713 — molecular biology — Posted on 2018-05-11

1691 Transcriptome Analysis of Neisseria gonorrhoeae During Natural Infection Reveals Differential Expression of Antibiotic Resistance Determinants Between Men and Women

Nudel, K.; McClure, R.; Moreau, M.; Abrams, A. J.; Tjaden, B.; Su, X.-H.; Trees, D. L.; RICE, P. A.; Massari, P.; Genco, C. A.

10.1101/319970 — microbiology — Posted on 2018-05-11

1692 Identification of cryptic stator subunits from an apicomplexan ATP synthase

Huet, D.; Rajendran, E.; van Dooren, G.; Lourido, S.

10.1101/314385 — microbiology — Posted on 2018-05-11

1693 High throughput single cell sequencing of both T-cell-receptor-beta alleles

Hosoya, T.; Li, H.; Ku, C.-J.; Wu, Q.; Guan, Y.; Engel, J. D.

10.1101/320614 — immunology — Posted on 2018-05-11

1694 Baculovirus-inducing fast-acting innate immunity kills Plasmodium liver stages

Emran, T. B.; Iyori, M.; Ono, Y.; Amelia, F.; Yusuf, Y.; Islam, A.; Alam, A.; Ogawa, R.; Matsuoka, H.; Yamamoto, D.; Yoshida, S.

10.1101/320036 — immunology — Posted on 2018-05-11

1695 Utilizing random regression models for genomic prediction of a longitudinal trait derived from high-throughput phenotyping

Campbell, M. T.; Walia, H.; Morota, G.

10.1101/319897 — genomics — Posted on 2018-05-11

1696 Global biogeographical regions of freshwater fishes

Leroy, B.; Dias, M. S.; Giraud, E.; Hugueny, B.; Jezequel, C.; Leprieur, F.; Oberdorff, T.; Tedesco, P. A.

10.1101/319566 — ecology — Posted on 2018-05-11

1697 Tannin evolution by niche construction: a spatial stoichiometric model

Arnoldi, J.-F.; Coq, S.; Kefi, S.; Ibanez, S.

10.1101/320572 — ecology — Posted on 2018-05-11

1698 A new subspecies of gray wolf, recently extinct, from Sicily, Italy (Carnivora, Canidae)

Angelici, F. M.; Rossi, L.

10.1101/320655 — zoology — Posted on 2018-05-11

1699 Adolescent Social Isolation Increases Vulnerability to Cocaine.

Fosnocht, A. Q.; Lucerne, K. E.; Ellis, A. S.; Olimpo, N. A.; Briand, L. A.

10.1101/320648 — neuroscience — Posted on 2018-05-11

1700 Mechanisms of synaptic zinc plasticity at mouse dorsal cochlear nucleus glutamatergic synapses

Vogler, N. W.; Tzounopoulos, T.

10.1101/320671 — neuroscience — Posted on 2018-05-11

1701 Measuring human sensitivity to perturbations within the manifold of natural images

Fruend, I.; Stalker, E. D.

10.1101/320531 — neuroscience — Posted on 2018-05-11

1702 Extensive and deep sequencing of the Venter/HuRef genome for developing and benchmarking genome analysis tools

Zhou, B.; Arthur, J. G.; Ho, S. S.; Pattni, R.; Wong, W. H.; Urban, A. E.

10.1101/281709 — genomics — Posted on 2018-05-11

1703 Localizing and classifying adaptive targets with trend filtered regression

Mughal, M. R.; DeGiorgio, M.

10.1101/320523 — evolutionary biology — Posted on 2018-05-11

1704 Dorsal/NF-κB exhibits a dorsal-to-ventral mobility gradient in the Drosophila embryo

Al Asafen, H.; Clark, N. M.; Jacobsen, T.; Sozzani, R.; Reeves, G.

10.1101/320754 — developmental biology — Posted on 2018-05-11

1705 Tumor suppressor DAPK1 catalyzes adhesion assembly on rigid but anoikis on soft matrices

Qin, R.; Wolfenson, H.; Saxena, M.; Sheetz, M.

10.1101/320739 — cell biology — Posted on 2018-05-11

1706 Calibration-independent Atomic Force Microscopy

Pimenta-Lopes, C.; Suay-Corredera, C.; Velazquez-Carreras, D.; Sanchez-Ortiz, D.; Alegre-Cebollada, J.

10.1101/293506 — biophysics — Posted on 2018-05-11

1707 Metatranscriptome analysis of the vaginal microbiota reveals potential mechanisms for protection against metronidazole in bacterial vaginosis

Deng, Z.-L.; Gottschick, C.; Bhuju, S.; Masur, C.; Abels, C.; Wagner-Doebler, I.

10.1101/248302 — microbiology — Posted on 2018-05-11

1708 Bivariate GWAS scan identifies six novel loci associated with lipid levels and coronary artery disease

Siewert, K. M.; Voight, B. F.

10.1101/319848 — genomics — Posted on 2018-05-11

1709 The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: the effects of sequencing techniques and sampling strategies

Fraisse, C.; Roux, C.; Gagnaire, P.-A.; Romiguier, J.; Faivre, N.; Welch, J. J.; Bierne, N.

10.1101/259135 — evolutionary biology — Posted on 2018-05-11

1710 Structural variability of EspG chaperones from mycobacterial ESX-1, ESX-3 and ESX-5 type VII secretion systems

Tuukkanen, A. T.; Freire, D.; Chan, S.; Arbing, M. A.; Reed, R. W.; Evans, T. J.; Zenkeviciute, G.; Kim, J.; Kahng, S.; Sawaya, M. R.; Wilmanns, M.; Eisenberg, D.; Parret, A. H. A.; Korotkov, K. V.

10.1101/250803 — biochemistry — Posted on 2018-05-11

1711 Hepatitis B vaccination as an elimination tool assessed in a paediatric cohort and simulated in a model.

McNaughton, A.; Lourenco, J.; Hattingh, L.; Adland, E.; Daniels, S.; van Zyl, A.; Akiror, C. S.; Wareing, S.; Jeffery, K.; Ansari, A.; Klenerman, P.; Goulder, P.; Gupta, S.; Jooste, P.; Matthews, P. C.

10.1101/162594 — microbiology — Posted on 2018-05-11

1712 Livestock genome annotation: transcriptome and chromatin structure profiling in cattle, goat, chicken and pig.

Foissac, S.; Djebali, S.; Munyard, K.; Villa-Vialaneix, N.; Rau, A.; Muret, K.; Esquerre, D.; Zytnicki, M.; Derrien, T.; Bardou, P.; Blanc, F.; Cabau, C.; Crisci, E.; Dhorne-Pollet, S.; Drouet, F.; Gonzales, I.; Goubil, A.; Lacroix-Lamande, S.; Laurent, F.; Marthey, S.; Marti-Marimon, M.; Momal-Leisenring, R.; Mompart, F.; Quere, P.; Robelin, D.; San Cristobal, M.; Tosser-Klopp, G.; Vincent-Naulleau, S.; Fabre, S.; Pinard-Van der Laan, M.-H.; Klopp, C.; Tixier-Boichard, M.; Acloque, H.; Lagarrigue, S.; Giuffra, E.

10.1101/316091 — genomics — Posted on 2018-05-11

1713 Peripheral blood DNA methylation and autism spectrum disorder

Andrews, S. V.; Sheppard, B.; Windham, G. C.; Schieve, L. A.; Schendel, D. E.; Croen, L. A.; Chopra, P.; Alisch, R. S.; Newschaffer, C. J.; Warren, S. T.; Feinberg, A. P.; Fallin, M. D.; Ladd-Acosta, C.

10.1101/320622 — genomics — Posted on 2018-05-11

1714 Detection of shared balancing selection in the absence of trans-species polymorphism

Cheng, X.; DeGiorgio, M.

10.1101/320390 — evolutionary biology — Posted on 2018-05-11

1715 Developmental system drift in motor ganglion patterning between distantly related tunicates

Lowe, E. K.; Stolfi, A.

10.1101/320804 — evolutionary biology — Posted on 2018-05-11

1716 Dose-dependent spatiotemporal responses of mammalian cells to an alkylating agent

Rancourt, A.; Sato, S.; Satoh, M. S.

10.1101/215764 — cell biology — Posted on 2018-05-11

1717 Whole-genome deep learning analysis reveals causal role of noncoding mutations in autism

Zhou, J.; Park, C.; Theesfeld, C.; Yuan, Y.; Sawicka, K.; Darnell, J.; Scheckel, C.; Fak, J.; Tajima, Y.; Darnell, R.; Troyanskaya, O.

10.1101/319681 — genomics — Posted on 2018-05-11

1718 Quality Control and Integration of Genotypes from Two Calling Pipelines for Whole Genome Sequence Data in the Alzheimer’s Disease Sequencing Project

Naj, A. C.; Lin, H.; Vardarajan, B. N.; White, S.; Lancour, D.; Ma, Y.; Schmidt, M.; Sun, F.; Butkiewicz, M.; Bush, W. S.; Kunkle, B. W.; Malamon, J.; Amin, N.; Choi, S. H.; Hamilton-Nelson, K. L.; van der Lee, S. J.; Gupta, N.; Koboldt, D. C.; Saad, M.; Wang, B.; Nato, A. Q.; Sohi, H. K.; Kuzma, A.; Alzheimer's Disease Sequencing Project (ADSP), ; Wang, L.-S.; Cupples, L. A.; van Duijn, C.; Seshadri, S.; Schellenberg, G. D.; Boerwinkle, E.; Bis, J. C.; Dupuis, J.; Salerno, W. J.; Wijsman, E. M.; Martin, E.; DeStefano, A. L.

10.1101/318857 — genetics — Posted on 2018-05-11

1719 Pleistocene climate change and the formation of regional species pools

Calatayud, J.; Rodriguez, M. A.; Molina-Venegas, R.; Leo, M.; Horreo, J. L.; Hortal, J.

10.1101/149617 — ecology — Posted on 2018-05-11

1720 A three dimensional multiplane kinematic model for bilateral hind limb gait analysis in cats

Brown, N.; Bertocci, G.; Cheffer, K.; Howland, D.

10.1101/320812 — neuroscience — Posted on 2018-05-11

1721 DOT1L suppresses nuclear RNAi originating from enhancer elements in Caenorhabditis elegans

Esse, R.; Gushchanskaia, E.; Lord, A.; Grishok, A.

10.1101/320465 — genomics — Posted on 2018-05-11

1722 Cell-free DNA profiling of metastatic prostate cancer reveals microsatellite instability, structural rearrangements and clonal hematopoiesis

Mayrhofer, M.; De Laere, B.; Whitington, T.; Van Oyen, P.; Ghysel, C.; Ampe, J.; Ost, P.; Demey, W.; Hoekx, L.; Schrijvers, D.; Brouwers, B.; Lybaert, W.; Everaert, E.; De Maeseneer, D.; Strijbos, M.; Bols, A.; Fransis, K.; Oeyen, S.; van Dam, P.-J.; Van den Eynden, G.; Rutten, A.; Aly, M.; Nordstrom, T.; Van Laere, S.; Rantalainen, M.; Rajan, P.; Egevad, L.; Ullen, A.; Yachnin, J.; Dirix, L.; Gronberg, H.; Lindberg, J.

10.1101/319855 — genomics — Posted on 2018-05-11

1723 Integrated Clinical and Omics Approach to Rare Diseases: Novel Genes and Oligogenic Inheritance in Holoprosencephaly

Kim, A.; Savary, C.; Dubourg, C.; Carre, W.; Mouden, C.; Hamdi-Roze, H.; Guyodo, H.; Le Douce, J.; Pasquier, L.; Flori, E.; Gonzales, M.; Beneteau, C.; Boute, O.; Attie-Bitach, T.; Roume, J.; Goujon, L.; Akloul, L.; Watrin, E.; Dupe, V.; Odent, S.; De Tayrac, M.; David, V.

10.1101/320127 — genetics — Posted on 2018-05-11

1724 BED-domain containing immune receptors confer diverse resistance spectra to yellow rust

Marchal, C.; Zhang, J.; Zhang, P.; Fenwick, P.; Steuernagel, B.; Adamski, N. M.; Boyd, L.; McIntosh, R.; Wulff, B. B. H.; Berry, S.; Lagudah, E.; Uauy, C.

10.1101/299651 — plant biology — Posted on 2018-05-11

1725 Global immune fingerprinting in glioblastoma reveals immune-suppression signatures associated with prognosis

Alban, T. J.; Alvarado, A. G.; Sorensen, M. D.; Bayik, D.; Volovetz, J.; Serbinowski, E.; Mulkearns-Hubert, E.; Sinyuk, M.; Hale, J. S.; Onzi, G. R.; McGraw, M.; Huang, P.; Grabowski, M. M.; Wathen, C. A.; Radivoyevitch, T.; Kornblum, H. I.; Kristensen, B. W.; Vogelbaum, M. A.; Lathia, J. D.

10.1101/309807 — cancer biology — Posted on 2018-05-11

1726 Silencing cuticular pigmentation genes enables RNA FISH in intact chemosensory appendages

Pentzold, S.; Grabe, V.; Ogonkov, A.; Schmidt, L.; Boland, W.; Burse, A.

10.1101/318535 — molecular biology — Posted on 2018-05-11

1727 Without quality presence-absence data, discrimination metrics such as TSS can be misleading measures of model performance

Leroy, B.; Delsol, R.; Hugueny, B.; Meynard, C. N.; Barhoumi, C.; Barbet-Massin, M.; Bellard, C.

10.1101/235770 — ecology — Posted on 2018-05-11

1728 Home ground advantage: selection against dispersers promotes cryptic local adaptation in wild salmon

Mobley, K. B.; Granroth-Wilding, H.; Ellmen, M.; Vaha, J.-P.; Aykanat, T.; Johnston, S. E.; Orell, P.; Erkinaro, J.; Primmer, C. R.

10.1101/311258 — evolutionary biology — Posted on 2018-05-11

1729 Cell type-dependent effects of ellagic acid on cellular metabolism

Boehning, A. L.; Essien, S. A.; Underwood, E. L.; Dash, P.; Boehning, D.

10.1101/319533 — cell biology — Posted on 2018-05-11

1730 Integrated proteogenomic analysis of metastatic thoracic tumors identifies APOBEC mutagenesis and copy number alterations as drivers of proteogenomic tumor evolution and heterogeneity

Roper, N.; Gao, S.; Maity, T. K.; Banday, A. R.; Zhang, X.; Venugopalan, A.; Cultraro, C. M.; Patidar, R.; Sindiri, S.; Goncearenco, A.; Panchenko, A. R.; Biswas, R.; Thomas, A.; Rajan, A.; Carter, C. A.; Kleiner, D.; Hewitt, S.; Khan, J.; Prokunina-Olsson, L.; Guha, U.

10.1101/301390 — cancer biology — Posted on 2018-05-11

1731 Chromatin remodelers couple inchworm motion with twist-defect formation to slide nucleosomal DNA

Brandani, G. B.; Takada, S.

10.1101/297762 — biophysics — Posted on 2018-05-11

1732 Exendin-4 disrupts responding to reward predictive incentive cues in rats

Wakabayashi, K. T.; Baindur, A. N.; Feja, M.; Chen, K.; Bernosky-Smith, K.; Bass, C. E.

10.1101/315705 — pharmacology and toxicology — Posted on 2018-05-11

1733 Risk Factors for Fouling Biomass: Evidence from Small Vessels in Australia

Lane, S.; Hollings, T.; Hayes, K. R.; McEnnulty, F. R.; Green, M.; Georgiades, E.; Robinson, A. P.

10.1101/248567 — ecology — Posted on 2018-05-11

1734 Identifying G protein-coupled receptor dimers from crystal packings

Stenkamp, R. E.

10.1101/282178 — biophysics — Posted on 2018-05-11

1735 Tensorial Blind Source Separation for Improved Analysis of Multi-Omic Data

Teschendorff, A.; Han, J.; Paul, D.; Virta, J.; Nordhausen, K.

10.1101/300277 — bioinformatics — Posted on 2018-05-11

1736 Virtual ChIP-seq: Predicting transcription factor binding by learning from the transcriptome

Karimzadeh, M.; Hoffman, M. M.

10.1101/168419 — bioinformatics — Posted on 2018-05-11

1737 Improving cross-cultural \"mind-reading\" with electrical brain stimulation

Martin, A. K.; Su, P.; Meinzer, M.

10.1101/313478 — neuroscience — Posted on 2018-05-11

1738 The Evolution and Sequence Diversity of FhuA in Salmonella and Escherichia

Wang, Y.; Chen, X.; Zhu, G.; White, A. P.; Köster, W.

10.1101/320069 — microbiology — Posted on 2018-05-11

1739 Clustering of Type 2 Diabetes Genetic Loci by Multi-Trait Associations Identifies Disease Mechanisms and Subtypes

Udler, M. S.; Kim, J.; von Grotthuss, M.; Bonas-Guarch, S.; Mercader, J. M.; Cole, J. B.; Chiou, J.; Anderson, C. D.; Boehnke, M.; Laakso, M.; Atzmon, G.; Glaser, B.; Gaulton, K.; Flannick, J.; Getz, G.; Florez, J. C.

10.1101/319509 — genetics — Posted on 2018-05-11

1740 Estimating the sensorimotor components of cybersickness

Weech, S.; Parokaran Varghese, J.; Barnett-Cowan, M.

10.1101/318758 — neuroscience — Posted on 2018-05-11

1741 HIV-1 antisense protein of different clades induces autophagy and associates to the autophagy factor p62

Liu, Z.; Torresilla, C.; Xiao, Y.; Cate, C.; Barbosa, K.; Rassart, E.; Cen, S.; Barbeau, B.

10.1101/320341 — microbiology — Posted on 2018-05-11

1742 The genetic architecture of hair colour in the UK population

Morgan, M. D.; Pairo-Castineira, E.; Rawlik, K.; Canela-Xandri, O.; Rees, J.; Sims, D.; Tenesa, A.; Jackson, I.

10.1101/320267 — genetics — Posted on 2018-05-11

1743 Floating search methodology for combining classification models for site recognition in DNA sequences

Perez-Rodriguez, J.; De Haro-Garcia, A.; Garcia-Pedrajas, N.

10.1101/320309 — bioinformatics — Posted on 2018-05-11

1744 Phylogenetic, population genetic, and morphological analyses reveal evidence for one species of Eastern Indigo Snake (Drymarchon couperi)

Folt, B.; Bauder, J.; Spear, S.; Stevenson, D.; Hoffman, M.; Oaks, J.; Jenkins, C.; Steen, D.; Guyer, C.

10.1101/318766 — zoology — Posted on 2018-05-11

1745 The molecular pathogenesis of superoxide dismutase 1-linked ALS is promoted by low oxygen tension

Keskin, I.; Forsgren, E.; Lehmann, M.; Andersen, P. M.; Brännström, T.; Lange, D. J.; Synofzik, M.; Nordström, U.; Zetterström, P.; Marklund, S. L.; Gilthorpe, J. D.

10.1101/320283 — neuroscience — Posted on 2018-05-11

1746 Adaptation of Intracortical Signaling Concurs with Enhanced Encoding Efficiency

Westerberg, J.; Cox, M. A.; Dougherty, K.; Maier, A.

10.1101/320226 — neuroscience — Posted on 2018-05-11

1747 Transcription apparatus of the yeast killer DNA plasmids: Architecture, function, and evolutionary origin

Sykora, M.; Pospisek, M.; Novak, J.; Mrvova, S.; Krasny, L.; Vopalensky, V.

10.1101/320143 — molecular biology — Posted on 2018-05-11

1748 Dlk1-Dio3 Locus-Derived LncRNAs Perpetuate Postmitotic Motor Neuron Cell Fate and Subtype Identity

Yen, Y.-P.; Hsieh, W.-F.; Lu, Y.-L.; Liau, E. S.; Hsu, H.-C.; Chen, Y.-C.; Liu, T.-C.; Chang, M.; Li, J.; Lin, S.-P.; Hung, J.-H.; Chen, J.-A.

10.1101/320135 — developmental biology — Posted on 2018-05-11

1749 Binocular modulation of monocular V1 neurons

Dougherty, K.; Cox, M. A.; Westerberg, J.; Maier, A.

10.1101/320218 — neuroscience — Posted on 2018-05-11

1750 The apical region of the herpes simplex virus major capsid protein promotes capsid maturation

Ruhge, L. L.; Huet, A.; Conway, J. F.; Smith, G. A.

10.1101/319988 — microbiology — Posted on 2018-05-11

1751 The potassium channel KCNJ13 is essential for smooth muscle cytoskeletal organization during mouse tracheal tubulogenesis

Yin, W.; Kim, H.-T.; Wang, S.; Gunawan, F.; Wang, L.; Kishimoto, K.; Zhong, H.; Roman, D.; Preussner, J.; Guenther, S.; Graef, V.; Buettner, C.; Grohmann, B.; Looso, M.; Morimoto, M.; Mardon, G.; Offermanns, S.; Stainier, D. Y. R.

10.1101/320119 — developmental biology — Posted on 2018-05-11

1752 Neutrophil microvesicles drive atherosclerosis by delivering miR-155 to atheroprone endothelium.

10.1101/319392 — cell biology — Posted on 2018-05-11

1753 IL-17RA-signaling modulates CD8+ T cell survival and exhaustion during Trypanosoma cruzi infection

Tosello Boari, J.; Araujo Furlan, C. L.; Fiocca Vernengo, F.; Rodriguez, C.; Ramello, M. C.; Amezcua Vesely, M. C.; Gorosito Serran, M.; Nuñez, N. G.; Richer, W.; Piaggio, E.; Montes, C. L.; Gruppi, A.; Acosta Rodriguez, E.

10.1101/314336 — immunology — Posted on 2018-05-11

1754 The Germ Theory of Regeneration

Beck, C. W.; Bishop, T. F.

10.1101/319939 — developmental biology — Posted on 2018-05-11

1755 Regulation of the error-prone DNA polymerase polκ by oncogenic signaling and its contribution to drug resistance

Temprine, K.; Langdon, E. M.; Mehta, K.; Clapp, A.; White, R. M.

10.1101/316729 — cancer biology — Posted on 2018-05-11

1756 Senescent CD4 T cells unequivocally identify primary resistance and risk of hyperprogression to PD-L1/PD-1 immune checkpoint blockade in lung cancer

Zuazo-Ibarra, M.; Arasanz, H.; Fernandez-Hinojal, G.; Gato-Canas, M.; Hernandez-Marin, B.; Martinez-Aguillo, M.; Lecumberri, M. J.; Fernandez, A.; Teijeira, L.; Vera, R.; Kochan, G.; Escors, D.

10.1101/320176 — cancer biology — Posted on 2018-05-11

1757 C. albicans Zn Cluster Transcription Factors Tac1 and Znc1 are Activated by Farnesol to Up Regulate a Transcriptional Program Including the Multi-Drug Efflux Pump CDR1

Liu, Z.; Rossi, J. M.; Myers, L. C.

10.1101/320028 — molecular biology — Posted on 2018-05-11

1758 Genetic effects on promoter usage are highly context-specific and contribute to complex traits

Alasoo, K.; Rodrigues, J.; Danesh, J.; Freitag, D. F.; Paul, D. S.; Gaffney, D. J.

10.1101/319806 — genomics — Posted on 2018-05-11

1759 Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case

wang, w.; Schalamun, M.; Morales Suarez, A.; Kainer, D.; Schwessinger, B.; Lanfear, R.

10.1101/320085 — genomics — Posted on 2018-05-11

1760 Pathogenic DDX3X mutations impair RNA metabolism and neurogenesis during fetal cortical development

Lennox, A. L.; Jiang, R.; Suit, L.; Fregeau, B.; Sheehan, C. J.; Aldinger, K. A.; Moey, C.; Lobach, I.; Mirzaa, G.; Afenjar, A.; Babovic-Vuksanovic, D.; Bezieau, S.; Blackburn, P. R.; Bunt, J.; Burglen, L.; Charles, P.; Chung, B. H. Y.; Cogne, B.; DeBrosse, S.; Di Donato, N.; Faivre, L.; Heron, D.; Innes, A. M.; Isidor, B.; Johnson-Kerner, B. L.; Keren, B.; Kimball, A.; Klee, E. W.; Kuentz, P.; Küry, S.; Martin-Coignard, D.; Mignot, C.; Miyake, N.; Nava, C.; Nizon, M.; Rodriguez, D.; Snijders Blok, L.; Thauvin, C.; Thevenon, J.; Vincent, M.; Ziegler, A.; Dobyns, W.; Richards, L. J.; Ba

10.1101/317974 — genetics — Posted on 2018-05-11

1761 Endothelial and non-endothelial responses to estrogen excess during development lead to vascular malformations

Parajes, S.; Ramas, S.; Stainier, D. Y. R.

10.1101/320234 — developmental biology — Posted on 2018-05-11

1762 Bottlenecks in the transmission of Porcine reproductive and respiratory syndrome virus (PRRSV1) to naïve pigs and quasi-species variation during infection in partially immune pigs

Cortey, M.; Arocena, G. M.; Pileri, E.; Martin-Valls, G. E.; Mateu, E.

10.1101/320366 — microbiology — Posted on 2018-05-11

1763 The protozoan Trichomonas vaginalis targets bacteria with laterally-acquired NlpC/P60 peptidoglycan hydrolases

Pinheiro, J.; Biboy, J.; Vollmer, W.; Hirt, R. P.; Keown, J. R.; Artuyants, A.; Goldstone, D. C.; Simoes-Barbosa, A.

10.1101/320382 — microbiology — Posted on 2018-05-11

1764 Human genomics of acute liver failure due to hepatitis B virus infection: an exome sequencing study in liver transplant recipients

Asgari, S.; Chaturvedi, N.; Scepanovic, P.; Hammer, C.; Semmo, N.; Giostra, E.; Müllhaupt, B.; Angus, P.; Thompson, A. J.; Moradpour, D.; Fellay, J.

10.1101/320374 — genomics — Posted on 2018-05-11

1765 A community-level investigation of the yellow fever virus outbreak in South Omo Zone, South-West Ethiopia, 2012-2014

Mulchandani, R.; Massebo, F.; Bocho, F.; Jeffries, C. L.; Walker, T.; Messenger, L. A.

10.1101/320317 — epidemiology — Posted on 2018-05-11

1766 Agent-Based Modeling Reveals Possible Mechanisms for Observed Aggregation Cell Behaviors in Myxococcus xanthus

Zhang, Z.; Cotter, C. R.; Shimkets, L. J.; Igoshin, O. A.

10.1101/320291 — microbiology — Posted on 2018-05-11

1767 Examining food intake and eating out of home patterns among university students

Llanaj, E.; Adany, R.; Lachat, C.; D'Haese, M.

10.1101/320325 — epidemiology — Posted on 2018-05-11

1768 Neuronal morphologies built for reliable physiology in a rhythmic motor circuit

Otopalik, A. G.; Marder, E.

10.1101/319582 — neuroscience — Posted on 2018-05-11

1769 The GalNAc-T Activation (GALA) Pathway: Drivers and Markers

Chia, J.; Tay, F.; Bard, F.

10.1101/301978 — cell biology — Posted on 2018-05-10

1770 Prediction of Mutations to Control Pathways Enabling Tumour Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial)

Levy, N.; Naldi, A.; Hernandez, C.; Stoll, G.; Thieffry, D.; Zinovyev, A.; Calzone, L.; Pauleve, L.

10.1101/319780 — systems biology — Posted on 2018-05-10

1771 Cargo Transport Shapes the Spatial Organization of a Microbial Community

Shrivastava, A.; Patel, V.; Tang, Y.; Yost, S. C.; Dewhirst, F. E.; Berg, H. C.

10.1101/318600 — microbiology — Posted on 2018-05-10

1772 Extensile motor activity drives coherent motions in a model of interphase chromatin

Saintillan, D.; Shelley, M. J.; Zidovska, A.

10.1101/319756 — biophysics — Posted on 2018-05-10

1773 Precision weighting of cortical unsigned prediction errors is mediated by dopamine and benefits learning

Haarsma, J.; Fletcher, P. C.; Ziauddeen, H.; Spencer, T. J.; Diederen, K. M. J.; Murray, G. K.

10.1101/288936 — neuroscience — Posted on 2018-05-10

1774 Movement-related activity dominates cortex during sensory-guided decision making

Musall, S.; Kaufman, M. T.; Gluf, S.; Churchland, A. K.

10.1101/308288 — neuroscience — Posted on 2018-05-10

1775 Comparative metagenomics of coalbed methane microbial communities reveals biogenic methane potential in the Appalachian Basin

Ross, D. E.; Lipus, D.; Gregory, K.; Gulliver, D.

10.1101/319590 — genomics — Posted on 2018-05-10

1776 Conformational heterogeneity allows access to DNA in longer Transcription Activator-Like Effector (TALE) arrays.

Geiger-Schuller, K.; Mitra, J.; Ha, T.; Barrick, D.

10.1101/319749 — biophysics — Posted on 2018-05-10

1777 Structural and functional studies of the RBPJ-SHARP complex reveal conserved corepressor binding site

Yuan, Z.; VanderWielen, B. D.; Giaimo, B. D.; Pan, L.; Collins, C. E.; Turkiewicz, A.; Hein, K.; Oswald, F.; Borggrefe, T.; Kovall, R. A.

10.1101/273615 — biochemistry — Posted on 2018-05-10

1778 Clostridium difficile alters the structure and metabolism of distinct cecal microbiomes during initial infection to promote sustained colonization

Jenior, M. L.; Leslie, J. L.; Young, V. B.; Schloss, P. D.

10.1101/211516 — microbiology — Posted on 2018-05-10

1779 Genome evolution in Burkholderia spp

Bochkareva, O. O.; Moroz, E. V.; Davydov, I. I.; Gelfand, M. S.

10.1101/319723 — genomics — Posted on 2018-05-10

1780 Identifying extrinsic versus intrinsic drivers of variation in cell behaviour in human iPS cell lines from healthy donors

Vigilante, A.; Laddach, A.; Moens, N.; Meleckyte, R.; Leha, A.; Ghahramani, A.; Culley, O. J.; Kathuria, A.; Hurling, C.; Vickers, A.; Tewary, M.; Zandstra, P.; HipSci Consortium, ; Durbin, R.; Fraternali, F.; Stegle, O.; Birney, E.; Luscombe, N. M.; Danovi, D.; Watt, F. M.

10.1101/285627 — cell biology — Posted on 2018-05-10

1781 Parallelized Inference for Single Cell Transcriptomic Clustering with Split Merge Sampling on DPMM Model

Duan, T.; Pinto, J. P.; Xie, X.

10.1101/271163 — bioinformatics — Posted on 2018-05-10

1782 Observed Antibody Space: a resource for data mining next generation sequencing antibody repertoires

Kovaltsuk, A.; Leem, J.; Kelm, S.; Snowden, J.; Deane, C. M.; Krawczyk, K.

10.1101/316026 — immunology — Posted on 2018-05-10

1783 Beyond the SNP threshold: identifying outbreak clusters using inferred transmissions

Stimson, J.; Gardy, J. L.; Mathema, B.; Crudu, V.; Cohen, T.; Colijn, C.

10.1101/319707 — genomics — Posted on 2018-05-10

1784 CRISPR/Cas9-targeted removal of unwanted sequences from small-RNA sequencing libraries

Hardigan, A. A.; Roberts, B. S.; Moore, D. E.; Ramaker, R. C.; Jones, A. L.; Myers, R. M.

10.1101/319715 — genomics — Posted on 2018-05-10

1785 Can the presence of neural probes be neglected in computational modeling of extracellular potentials?

Buccino, A.; Kuchta, M.; Jaeger, K.; Ness, T.; Mardal, K.-A.; Cauwenberghs, G.; Tveito, A.

10.1101/318741 — bioengineering — Posted on 2018-05-10

1786 Production of spliced long noncoding RNAs specifies regions with increased enhancer activity

Gil, N.; Ulitsky, I.

10.1101/319400 — genomics — Posted on 2018-05-10

1787 Programmed Variations of Cytokinesis Contribute to Morphogenesis in the C. elegans embryo

Bai, X.; Lee, P.-Y.; Chen, C.-Y.; Simmons, J. R.; Nebenfuehr, B.; Mitchell, D.; Klebanow, L. R.; Mattson, N.; Turpin, C.; Chen, B.-C.; Betzig, E.; Bembenek, J. N.

10.1101/319657 — cell biology — Posted on 2018-05-10

1788 What you predict, not what you do, updates memories in visuomotor adaptation

Lee, K.; Oh, Y.; Izawa, J.; Schweighofer, N.

10.1101/313551 — neuroscience — Posted on 2018-05-10

1789 A double dissociation in sensitivity to verb and noun semantics across cortical networks.

Elli, G. V.; Lane, C.; Bedny, M.

10.1101/319640 — neuroscience — Posted on 2018-05-10

1790 Phenotypic variability in chloroplast redox state predicts cell fate in a marine diatom

Mizrachi, A.; Graff van Creveld, S.; Shapiro, O. H.; Rosenwasser, S.; Vardi, A.

10.1101/319517 — microbiology — Posted on 2018-05-10

1791 Clustering of Type 2 Diabetes Genetic Loci by Multi-Trait Associations Identifies Disease Mechanisms and Subtypes

10.1101/319509 — genetics — Posted on 2018-05-10

1792 Evolutionary changes in DNA accessibility and sequence predict divergence of transcription factor binding and enhancer activity

Peng, P.-C.; Khoueiry, P.; Girardot, C.; Reddington, J. P.; Garfield, D. A.; Furlong, E. E. M.; Sinha, S.

10.1101/319046 — evolutionary biology — Posted on 2018-05-10

1793 Simulating Contact Using the Elastic Foundation Algorithm in OpenSim

Hast, M. W.; Hanson, B. G.; Baxter, J. R.

10.1101/319616 — bioengineering — Posted on 2018-05-10

1794 PRX9 and PRX40 are extensin peroxidases essential for maintaining tapetum and microspore cell wall integrity during Arabidopsis anther development

Jacobowitz, J.; Weng, J.-K.

10.1101/319020 — plant biology — Posted on 2018-05-10

1795 Crowdsourced study of children with autism and their typically developing siblings identifies differences in taxonomic and predicted function for stool-associated microbes using exact sequence variant analysis.

David, M. M.; Tataru, C.; Daniels, J.; Schwartz, J.; Keating, J.; Hampton-Marcell, J.; Gottel, N.; Gilbert, J. A.; Wall, D. P.

10.1101/319236 — microbiology — Posted on 2018-05-10

1796 Rapid sex-specific evolution of age at maturity is shaped by genetic architecture in Atlantic salmon

Czorlich, Y.; Aykanat, T.; Erkinaro, J.; Orell, P.; Primmer, C. R.

10.1101/317255 — evolutionary biology — Posted on 2018-05-10

1797 Basal level of p53 regulates cell population homeostasis

Rancourt, A.; Sato, S.; Satoh, M. S.

10.1101/319525 — cell biology — Posted on 2018-05-10

1798 Prolyl Endopeptidase (PREP) is Involved in the Reproductive Functions and Cytoskeletal Organization in Rat Spermatogenesis and in Mammalian Sperm.

Venditti, M.; Minucci, S.

10.1101/319491 — cell biology — Posted on 2018-05-10

1799 Cell type-dependent effects of ellagic acid on cellular metabolism

Boehning, A. L.; Essien, S. A.; Underwood, E. L.; Dash, P.; Boehning, D.

10.1101/319533 — cell biology — Posted on 2018-05-10

1800 Insights into the cooperative nature of ATP hydrolysis in actin filaments

Katkar, H. H.; Davtyan, A.; Durumeric, A. E. P.; Hocky, G. M.; Schramm, A. C.; De La Cruz, E. M.; Voth, G. A.

10.1101/319558 — biophysics — Posted on 2018-05-10

1801 Facility ownership and mortality among older adults residing in care homes

Damian, J.; Pastor-Barriuso, R.; Garcia-Lopez, F. J.; Ruigomez, A.; Martinez-Martin, P.; de Pedro-Cuesta, J.

10.1101/319459 — epidemiology — Posted on 2018-05-10

1802 Co-transcriptional loading of RNA export factors shapes the human transcriptome.

Viphakone, N.; Sudbery, I. M.; Heath, C.; Sims, D.; Wilson, S. A.

10.1101/318709 — molecular biology — Posted on 2018-05-10

1803 Escherichia coli ZipA organizes FtsZ polymers into dynamic ring-like protofilament structures

Margolin, W.; Krupka, M.; Sobrinos-Sanguino, M.; Jimenez, M.; Rivas, G.

10.1101/319228 — microbiology — Posted on 2018-05-10

1804 Tissue-specific BMAL1 cistromes reveal that enhancer-enhancer interactions regulate rhythmic transcription

Beytebiere, J. R.; Trott, A. J.; Greenwell, B.; Osborne, C. A.; Vitet, H. M.; Spence, J.; Yoo, S.-H.; Chen, Z.; Takahashi, J. S.; Ghaffari, N.; Menet, J. S.

10.1101/319319 — genetics — Posted on 2018-05-10

1805 Expanded GGGGCC repeat transcription is mediated by the PAF1 complex in C9orf72-associated FTD.

Goodman, L. D.; Prudencio, M.; Martinez-Ramirez, L. F.; Lan, M.; Parisi, M.; Petrucelli, L.; Bonini, N. M.

10.1101/319376 — neuroscience — Posted on 2018-05-10

1806 Directed Bayesian Networks established functional differences between breast cancer subtypes

10.1101/319384 — cancer biology — Posted on 2018-05-10

1807 All-in-One Adeno-associated Virus Delivery and Genome Editing by Neisseria meningitidis Cas9 in vivo

Ibraheim, R.; Song, C.-Q.; Mir, A.; Amrani, N.; Xue, W.; Sontheimer, E. J.

10.1101/295055 — molecular biology — Posted on 2018-05-10

1808 Mutation accumulation in selfing populations under fluctuating selection

Ho, E. K.; Agrawal, A. F.

10.1101/230326 — evolutionary biology — Posted on 2018-05-10

1809 Reply: Neutral tumor evolution?

Heide, T.; Zapata, L.; Williams, M. J.; Werner, B.; Barnes, C. P.; Graham, T.; Sottoriva, A.

10.1101/274142 — cancer biology — Posted on 2018-05-10

1810 Sensitivity of heat detection attentions and their relation with the moment of LH surge in dairy cows

Adriaens, I.; Saeys, W.; Lamberigts, C.; Berth, M.; Geerinckx, K.; Leroy, J.; De Ketelaere, B.; Aernouts, B.

10.1101/249169 — bioengineering — Posted on 2018-05-10

1811 Recovery after stroke: not so proportional after all?

Hope, T. M. H.; Friston, K.; Price, C. J.; Leff, A. P.; Rotshtein, P.; Bowman, H.

10.1101/306514 — neuroscience — Posted on 2018-05-10

1812 Recruitment of occipital cortex by arithmetic processing follows computational bias in early blind

Crollen, V.; Lazzouni, L.; Bellemare, A.; Rezk, M.; Lepore, F.; Noël, M.-P.; Seron, X.; Collignon, O.

10.1101/319343 — neuroscience — Posted on 2018-05-10

1813 Highly multiplexed immunofluorescence imaging of human tissues and tumors using t-CyCIF and conventional optical microscopes

Lin, J.-R.; Izar, B.; Mei, S.; Wang, S.; Shah, P.; Yapp, C.; Santagata, S.; Sorger, P.

10.1101/151738 — cancer biology — Posted on 2018-05-10

1814 BayesENproteomics: Bayesian elastic nets for quantification of proteoforms in complex samples

Mallikarjun, V.; Richardson, S. M.; Swift, J.

10.1101/295527 — bioinformatics — Posted on 2018-05-10

1815 Mouse models of hereditary hemochromatosis do not develop early liver fibrosis in response to a high fat diet

Pantopoulos, K.; Wagner, J.; Fillebeen, C.; Haliotis, T.; Mui, J.; Vali, H.

10.1101/319442 — pathology — Posted on 2018-05-10

1816 Global transcriptional analysis of Geobacter sulfurreducens under palladium reducing conditions reveals new key cytochromes involved

Hernandez-Eligio, A.; Pat-Espadas, A. M.; Vega-Alvarado, L.; Huerta-Amparan, M.; Cervantes, F. J.; Juarez, K.

10.1101/319194 — microbiology — Posted on 2018-05-10

1817 The landscape and diagnostic potential of T and B cell repertoire in Immunoglobulin A Nephropathy

Huang, C.; Li, X.; Wu, J.; Zhang, W.; Sun, S.; Lin, L.; Wang, X.; Li, H.; Wu, X.; Zhang, P.; Xu, G.; Wan, H.; Liu, H.; Liu, Y.; Chen, D.; Zhuo, L.; Yang, H.; Wang, J.; Wang, L.; Liu, X.

10.1101/316216 — immunology — Posted on 2018-05-10

1818 Tissue-specific BMAL1 cistromes reveal that enhancer-enhancer interactions regulate rhythmic transcription

Menet, J. S.; Beytebiere, J. R.; Trott, A. J.; Greenwell, B.; Osborne, C. A.; Vitet, H. M.; Spence, J.; Yoo, S.-H.; Chen, Z.; Takahashi, J. S.; Ghaffari, N.

10.1101/319319 — genetics — Posted on 2018-05-10

1819 Determination of novel members in the Drosophila melanogaster anterior-posterior patterning system using natural variation

Jermusyk, A. A.; Gharavi, S. E.; Tingare, A. S.; Reeves, G. T.

10.1101/319434 — developmental biology — Posted on 2018-05-10

1820 Dynein catch bond as a mediator of codependent bidirectional cellular transport

Puri, P.; Gupta, N.; Chandel, S.; Naskar, S.; Nair, A.; Chaudhuri, A.; Mitra, M. K.; Muhuri, S.

10.1101/250175 — biophysics — Posted on 2018-05-10

1821 Dynamics and interactions of ADP/ATP transporter AAC3 in DPC detergent are not functionally relevant

Kurauskas, V.; Hessel, A.; Dehez, F.; Chipot, C.; Bersch, B.; Schanda, P.

10.1101/317669 — biophysics — Posted on 2018-05-10

1822 Inhibitory and excitatory mechanisms in the human cingulate-cortex support reinforcement learning

Bezalel, V.; Paz, R.; Tal, A.

10.1101/318659 — neuroscience — Posted on 2018-05-10

1823 Addiction beyond pharmacological effects: the role of environment complexity and bounded rationality

Ognibene, D.; Fiore, V. G.; Gu, X.

10.1101/179739 — neuroscience — Posted on 2018-05-10

1824 Dynamic and causal contribution of parietal circuits to perceptual decisions during category learning

Zhong, L.; Zhang, Y.; Duan, C. A.; Pan, J.; Xu, N.-l.

10.1101/304071 — neuroscience — Posted on 2018-05-10

1825 Intrinsically regulated learning is modulated by synaptic dopamine availability

Ripolles, P.; Ferreri, L.; Mas-Herrero, E.; Alicart, H.; Gomez-Andres, A.; Marco-Pallares, J.; Antonijoan, R. M.; Noesselt, T.; Valle, M.; Riba, J.; Rodriguez-Fornells, A.

10.1101/318576 — neuroscience — Posted on 2018-05-10

1826 Silencing cuticular pigmentation genes enables RNA FISH in intact chemosensory appendages

Pentzold, S.; Grabe, V.; Ogonkov, A.; Schmidt, L.; Boland, W.; Burse, A.

10.1101/318535 — molecular biology — Posted on 2018-05-10

1827 LOW-BIAS RNA SEQUENCING OF THE HIV-2 GENOME FROM BLOOD PLASMA

James, K. L.; de Silva, T.; Brown, K.; Whittle, H.; Taylor, S.; McVean, G.; Esbjörnsson, J.; Rowland-Jones, S.

10.1101/319186 — microbiology — Posted on 2018-05-10

1828 Identification of a host collagen inducing factor from the excretory secretory proteins of Trichinella spiralis using immunoscreening

Park, M. K.; Kim, H. J.; Cho, M. K.; Kang, S. A.; Park, S. Y.; Jang, S. B.; YU, H. S.; no,

10.1101/319483 — immunology — Posted on 2018-05-10

1829 Riparian reserves in oil palm plantations may provide movement corridors for invertebrates

Gray, R. E. J.; Slade, E. M.; Chung, A. Y. C.; Lewis, O. T.

10.1101/204990 — ecology — Posted on 2018-05-10

1830 Arginine citrullination at the C-terminal domain controls RNA Polymerase transcription

Sharma, P.; Lioutas, A.; Fuentes, N. F.; Quilez, J.; Caballero, J. C.; H. G. Wright, R.; Di Vona, C.; Le Dily, F.; Schuller, R.; Eick, D.; Oliva, B.; Beato, M.

10.1101/216143 — cancer biology — Posted on 2018-05-10

1831 Online resources for PCAWG data exploration, visualization, and discovery

Goldman, M.; Zhang, J.; Fonseca, N. A.; Xiang, Q.; Craft, B.; Pineiro-Yanez, E.; O'Connor, B.; Bazant, W.; Barrera, E.; Munoz, A.; Petryszak, R.; Füllgrabe, A.; Al-Shahrour, F.; Keays, M.; Haussler, D.; Weinstein, J.; Huber, W.; Valencia, A.; Papatheodorou, I.; Zhu, J.; Ferreti, V.; Vazquez, M.; PCAWG-12 Working Group, ; PCAWG Network,

10.1101/163907 — bioinformatics — Posted on 2018-05-10

1832 Glycosylation-associated dysregulation of pyocyanin production in Pseudomonas aeruginosa: Implications for quorum sensing regulation

McClinton, A. K.; Hamilton, C. L.; Cioffi, D. L.; Cioffi, E. A.

10.1101/319418 — microbiology — Posted on 2018-05-10

1833 Analysis of mycobacterial infection-induced changes to host lipid metabolism in a zebrafish infection model reveals a conserved role for LDLR in infection susceptibility

Johansen, M. D.; Hortle, E.; Kasparian, J. A.; Romero, A.; Novoa, B.; Figueras, A.; Britton, W. J.; de Silva, K.; Purdie, A. C.; Oehlers, S. H.

10.1101/250548 — immunology — Posted on 2018-05-10

1834 Harvesting information from ultra-short ancient DNA sequences

de Filippo, C.; Meyer, M.; Pruefer, K.

10.1101/319277 — genomics — Posted on 2018-05-10

1835 The effector of Hippo signaling, Taz, is required for formation of the micropyle and fertilization in zebrafish

Yi, X.; Yu, J.; Ma, C.; Dong, G.; Shi, W.; Li, L.; Luo, L.; Sampath, K.; Ruan, H.; Huang, H.

10.1101/319475 — developmental biology — Posted on 2018-05-10

1836 A stochastic epigenetic switch controls the dynamics of T-cell lineage commitment

Ng, K. K. N.; Yui, M. A.; Mehta, A.; Siu, S.; Irwin, B.; Pease, S.; Hirose, S.; Elowitz, M. B.; Rothenberg, E. V.; Kueh, H. Y.

10.1101/318675 — bioinformatics — Posted on 2018-05-10

1837 Effects of Parkinson’s disease and dopamine on digit span measures of working memory

Grogan, J. P.; Knight, L. E.; Smith, L.; Irigoras Izagirre, N.; Howat, A.; Knight, B. E.; Bickerton, A.; Isotalus, H. K.; Coulthard, E. J.

10.1101/318311 — neuroscience — Posted on 2018-05-10

1838 Alginate-regulating genes are identified in the clinical cystic fibrosis isolate of Pseudomonas aeruginosa PA2192

Colbert, B.; Kumari, H.; Pinon, A.; Frey, L.; Pandey, S.; Mathee, K.

10.1101/319004 — microbiology — Posted on 2018-05-10

1839 Cargo Transport Shapes the Spatial Organization of a Microbial Community

Shrivastava, A.; Patel, V.; Tang, Y.; Yost, S. C.; Dewhirst, F. E.; Berg, H. C.

10.1101/318600 — microbiology — Posted on 2018-05-10

1840 Energetic stress and infection generate immunity-fecundity tradeoffs in Drosophila

Buchanan, J. L.; Meiklejohn, C. D.; Montooth, K. L.

10.1101/318568 — genetics — Posted on 2018-05-10

1841 MiR-29b-1-5p is altered in BRCA1 mutant tumours and is a biomarker in basal- like breast cancer

Milevskiy, M.; Sandhu, G.; Wronski, A.; Korbie, D.; Brewster, B.; Shewan, A.; Edwards, S.; French, J.; Brown, M.

10.1101/319129 — cancer biology — Posted on 2018-05-10

1842 Developing NMR methods for macromolecular machines: Measurement of residual dipolar couplings to probe dynamical regions of the ribosome

Wang, X.; Kirkpatrick, J. P.; Launay, H. M. M.; de Simone, A.; Häussinger, D.; Dobson, C. M.; Vendruscolo, M.; Cabrita, L. D.; Waudby, C.; Christodoulou, J.

10.1101/319251 — biophysics — Posted on 2018-05-10

1843 Integrative analysis of 5-methyl- and 5-hydroxymethylcytosine indicates a role for 5-hydroxymethylcytosine as a repressive epigenetic mark

Schlosberg, C. E.; Edwards, J. R.

10.1101/318808 — bioinformatics — Posted on 2018-05-10

1844 Boosting heterologous protein production yield by adjusting global nitrogen and carbon metabolic regulatory networks in Bacillus subtilis

Cao, H.; Villatoro-Hernandez, J.; Weme, R. D. O.; Frenzel, E.; Kuipers, O. P.

10.1101/319293 — bioengineering — Posted on 2018-05-10

1845 Modeling gene expression networks to predict interchromosomal organization during human embryonic stem cell differentiation

Laster, K. V.; Garza-Gongora, A. G.; Daley, E.; Terskikh, A.; Kiskinis, E.; Smith, E. D.; Kosak, S.

10.1101/318899 — systems biology — Posted on 2018-05-10

1846 The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities

Baldini, F.; Heinken, A.; Heirendt, L.; Magnusdottir, S.; Fleming, R. M. T.; Thiele, I.

10.1101/318485 — systems biology — Posted on 2018-05-10

1847 Temporal dynamics of endogenous attentional modulation without cue awareness

Osako, Y.; Murai, S.; Shimpaku, J.; Kobayasi, K. I.

10.1101/319137 — neuroscience — Posted on 2018-05-10

1848 GABAergic malfunction underlying maternal immune activation-induced social deficits

Okamoto, K.; Hitora-Imamura, N.; Hioki, H.; Ikegaya, Y.

10.1101/319244 — neuroscience — Posted on 2018-05-10

1849 Error-correcting dynamics in visual working memory

Panichello, M. F.; DePasquale, B.; Pillow, J. W.; Buschman, T.

10.1101/319103 — neuroscience — Posted on 2018-05-10

1850 Co-transcriptional loading of RNA export factors shapes the human transcriptome.

Viphakone, N.; Sudbery, I. M.; Heath, C.; Sims, D.; Wilson, S. A.

10.1101/318709 — molecular biology — Posted on 2018-05-10

1851 Mycobacterium marinum infection drives foam cell differentiation in zebrafish infection models

Johansen, M. D.; Kasparian, J. A.; Hortle, E.; Britton, W. J.; Purdie, A. C.; Oehlers, S. H.

10.1101/319202 — immunology — Posted on 2018-05-10

1852 Group size effects in social evolution

Pena, J.; Nöldeke, G.

10.1101/319350 — evolutionary biology — Posted on 2018-05-10

1853 Single-cell transcriptome profiling of the Ciona larval brain

Sharma, S.; Wang, W.; Stolfi, A.

10.1101/319327 — developmental biology — Posted on 2018-05-10

1854 PARPi triggers STING-dependent immune response and enhances therapeutic efficacy of immune checkpoint blockade independent of BRCAness

Shen, J.; Zhao, W.; Ju, Z.; Wang, L.; Peng, Y.; Labrie, M.; Yap, T.; Mills, G. B.; Peng, G.

10.1101/318980 — cancer biology — Posted on 2018-05-10

1855 The variations of human miRNAs and Ising like base pairing models

Banerjee, J. P.; Das, J. K.; Pal Choudhury, P.; Mukherjee, S.; Hassan, S. S.; Basu, P.

10.1101/319301 — bioinformatics — Posted on 2018-05-10

1856 Refinement of highly flexible protein structures using simulation-guided spectroscopy

Hays, J. M.; Kieber, M. K.; Li, J. Z.; Han, J. I.; Moremen, K. W.; Columbus, L.; Kasson, P. M.

10.1101/319335 — bioinformatics — Posted on 2018-05-10

1857 High-resolution analysis of the peptidoglycan composition in Streptomyces coelicolor

van Wezel, G.; van der Aart, L.; Spijksma, G. K.; Harms, A.; Vollmer, W.; Hankemeier, T.

10.1101/319178 — biochemistry — Posted on 2018-05-10

1858 Binocular Integration Manifests as a Transient Spiking Increase Followed by Selective Suppression in Primary Visual Cortex

Cox, M. A.; Dougherty, K.; Westerberg, J.; Schall, M.; Maier, A.

10.1101/318667 — neuroscience — Posted on 2018-05-10

1859 Neural plasticity following surgical correction of strabismus in monkeys

Pullela, M.; Agaoglu, M. N.; Joshi, A. C.; Agaoglu, S.; Coats, D. K.; Das, V. E.

10.1101/319012 — neuroscience — Posted on 2018-05-10

King, M.; Groen, I. I. A.; Steel, A.; Kravitz, D.; Baker, C.

10.1101/316554 — neuroscience — Posted on 2018-05-10

1861 Molecularly distinct astrocyte subpopulations spatially pattern the adult mouse brain

Batiuk, M.; Martirosyan, A.; Voet, T.; Ponting, C.; Belgard, T. G.; Holt, M. G.

10.1101/317503 — neuroscience — Posted on 2018-05-10

1862 Widespread Alterations in Translation Elongation in the Brain of Juvenile Fmr1 Knock-Out Mice

Das Sharma, S.; Metz, J. B.; Li, H.; Hobson, B. D.; Hornstein, N.; Sulzer, D.; Tang, G.; Sims, P. A.

10.1101/319368 — molecular biology — Posted on 2018-05-10

1863 Microbial Reduction of Metal-Organic Frameworks Enables Synergistic Chromium Removal

Springthorpe, S. K.; Dundas, C. M.; Keitz, B. K.

10.1101/318782 — microbiology — Posted on 2018-05-10

1864 Activity of Telavancin against S. aureus isolated from cystic fibrosis patients including those with decreased susceptibility to Ceftaroline

Roch, M.; Varela, M. C.; Taglialegna, A.; Rose, W. E.; Rosato, A. E.

10.1101/319210 — microbiology — Posted on 2018-05-10

1865 Contrasting effects of acute and chronic stress on the transcriptome, epigenome, and immune response of Atlantic salmon

Uren Webster, T. M.; Rodriguez-Barreto, D.; Martin, S. A. M.; van Oosterhout, C.; Orozco-terWengel, P.; Cable, J.; Hamilton, A.; Garcia de Leaniz, C.; Consuegra, S.

10.1101/319285 — genomics — Posted on 2018-05-10

1866 Loss of glutathione redox homeostasis impairs proteostasis by inhibiting autophagy-dependent protein degradation

10.1101/309849 — genetics — Posted on 2018-05-10

1867 Refining fine-mapping: effect sizes and regional heritability

Benner, C.; Havulinna, A.; Salomaa, V.; Ripatti, S.; Pirinen, M.

10.1101/318618 — genetics — Posted on 2018-05-10

1868 Modeling genome-wide evolution of catalytic turnover rates: Strong epistasis shaped modern enzyme kinetics

Heckmann, D.; Zielinski, D. C.; Palsson, B. O.

10.1101/318972 — evolutionary biology — Posted on 2018-05-10

1869 Testing Darwin’s hypothesis about the most wonderful plant in the world: The Venus flytrap’s marginal spikes are a ‘horrid prison’ for moderate-sized insect prey

Davis, A. L.; Babb, M. H.; Lee, B. T.; Martin, C.

10.1101/318790 — evolutionary biology — Posted on 2018-05-10

1870 Comparison of the 3-D patterns of the parasympathetic nervous system in the lung at late developmental stages between mouse and chicken

Watanabe, T.; Nakamura, R.; Takase, Y.; Susaki, E. A.; Ueda, H. R.; Tadokoro, R.; Takahashi, Y.

10.1101/318113 — developmental biology — Posted on 2018-05-10

1871 The Effect of Gene Set Overlap on Specificity of Over-representation Analysis

Maleki, F.; Kusalik, A. J.

10.1101/319145 — bioinformatics — Posted on 2018-05-10

1872 SequencEnG: an Interactive Knowledge Base of Sequencing Techniques

Zhang, Y.; Manjunath, M.; Kim, Y.; Heintz, J.; Song, J. S.

10.1101/319079 — bioinformatics — Posted on 2018-05-10

1873 Measuring Clinically Relevant Knee Motions With A Self-Calibrated Wearable Sensor

Hullfish, T. J.; Qu, F.; Stoeckl, B. D.; Gebhard, P. M.; Mauck, R. L.; Baxter, J. R.

10.1101/309328 — bioengineering — Posted on 2018-05-10

1874 Bone remodeling: A tissue-level process emerging from cell-level molecular algorithms

Arias, C. F.; Herrero, M. A.; Echeverri, L. F.; Oleaga, G. E.; Lopez, J. M.

10.1101/318931 — systems biology — Posted on 2018-05-10

1875 Viewing one’s body during encoding boosts episodic memory

Blanke, O.; Brechet, L.; Mange, R.; Herbelin, B.; Gauthier, B.; Serino, A.

10.1101/318956 — neuroscience — Posted on 2018-05-10

1876 CDK19 is a Regulator of Triple-Negative Breast Cancer Growth

Hsieh, R. W.; Kuo, A. H.; Scheeren, F. A.; Zarnegar, M. A.; Sikandar, S. S.; Antony, J.; Heitink, L. S.; Periyakoil, D.; Kalisky, T.; Sim, S.; Qian, D.; Malhotra, S. V.; Somlo, G.; Dirbas, F. M.; Jadhav, A.; Newman, A. M.; Clarke, M. F.

10.1101/317776 — cancer biology — Posted on 2018-05-10

1877 Enhanced Neurite Outgrowth and Regeneration in ALS Resistant Motor Neurons from SOD1 Mutant Mouse Models

Osking, Z.; Ayers, J. I.; Hildebrandt, R.; Skruber, K.; Eukovich, A. R.; Brown, H.; Ryu, D.; Golde, T. E.; Borchelt, D. R.; Read, T.-A.; Vitriol, E. A.

10.1101/303271 — neuroscience — Posted on 2018-05-09

1878 Integrin and ligand-independent PDGFr signaling synergistically contribute to directional migration of Xenopus mesendoderm

Richardson, C. M.; Dzamba, B. J.; Sonavane, P. R.; DeSimone, D. W.

10.1101/318824 — developmental biology — Posted on 2018-05-09

1879 Comprehensive Glycoproteomic Analysis of Chinese Hamster Ovary Cells

Yang, G.; Hu, Y.; Sun, S.; Ouyang, C.; Yang, W.; Betenbaugh, M.; Zhang, H.

10.1101/318865 — biochemistry — Posted on 2018-05-09

1880 Three enzymes and one substrate; regulation of flux through the glyoxylate shunt in the opportunistic pathogen, Pseudomonas aeruginosa.

Crousilles, A. L.; Dolan, S. K.; Brear, P.; Chirgadze, D. Y.; Welch, M.

10.1101/318345 — biochemistry — Posted on 2018-05-09

1881 Expression and purification of a functional heteromeric GABAA receptor for structural studies

Claxton, D. P.; Gouaux, E.

10.1101/318832 — biochemistry — Posted on 2018-05-09

1882 Kinase activity simultaneously determines the constitutive and the orthosteric gating in α4β1/3δ GABAA receptors in hippocampal granule cells

Dalby, N. O.; Leurs, U.; Falk-Petersen, C. B.; Scholze, P.; Krall, J.; Frolund, B.; Wellendorph, P.

10.1101/318543 — neuroscience — Posted on 2018-05-09

1883 Cargo Transport Shapes the Spatial Organization of a Microbial Community

Shrivastava, A.; Patel, V.; Tang, Y.; Yost, S. C.; Dewhirst, F. E.; Berg, H. C.

10.1101/318600 — microbiology — Posted on 2018-05-09

1884 Multiple functions for the catenin family member plakoglobin in cadherin-dependent adhesion, fibronectin matrix assembly and Xenopus gastrulation movements

Hirsh, G. D.; Dzamba, B. J.; Sonavane, P. R.; Shook, D. R.; Allen, C. M.; DeSimone, D. W.

10.1101/318774 — developmental biology — Posted on 2018-05-09

1885 Structural and functional studies of the RBPJ-SHARP complex reveal conserved corepressor binding site

Yuan, Z.; VanderWielen, B. D.; Giaimo, B. D.; Pan, L.; Collins, C. E.; Turkiewicz, A.; Hein, K.; Oswald, F.; Borggrefe, T.; Kovall, R. A.

10.1101/273615 — biochemistry — Posted on 2018-05-09

1886 Bivariate Gaussian Mixture Model of GWAS (BGMG) quantifies polygenic overlap between complex traits beyond genetic correlation

Frei, O.; Holland, D.; Smeland, O. B.; Shadrin, A. A.; Fan, C. C.; Witoelar, A.; Wang, Y.; Djurovic, S.; Thompson, W.; Andreassen, O. A.; Dale, A. M.

10.1101/240275 — genetics — Posted on 2018-05-09

1887 The H3K9 methyltransferase SETDB1 maintains female identity in Drosophila germ cells by repressing expression of key spermatogenesis genes

Smolko, A.; Shapiro-Kulnane, L.; Salz, H.

10.1101/259473 — developmental biology — Posted on 2018-05-09

1888 Auxin regulates endosperm cellularization in Arabidopsis

Figueiredo, D. D.; Batista, R. A.; Kohler, C.

10.1101/239301 — plant biology — Posted on 2018-05-09

1889 Binocular disparity augments the capacity of vision without affecting subjective experience of depth

Railo, H.; Saastamoinen, J.; Kylmala, S.; Peltola, A.

10.1101/222034 — neuroscience — Posted on 2018-05-09

1890 The cohesin ring uses its hinge to organize DNA using non-topological as well as topological mechanisms

Srinivasan, M.; Scheinost, J.; Petela, N.; Gligoris, T.; Wissler, M.; Ogushi, S.; Collier, J.; Voulgaris, M.; Kurze, A.; Chan, K.-L.; Hu, B.; Costanzo, V.; Nasmyth, K.

10.1101/197848 — molecular biology — Posted on 2018-05-09

1891 NmeCas9 is an intrinsically high-fidelity genome editing platform

Amrani, N.; Gao, X. D.; Liu, P.; Edraki, A.; Mir, A.; Ibraheim, R.; Gupta, A.; Sasaki, K. E.; Wu, T.; Donohoue, P. D.; Settle, A. H.; Lied, A. M.; McGovern, K.; Fuller, C. K.; Cameron, P.; Fazzio, T. G.; Zhu, L. J.; Wolfe, S. A.; Sontheimer, E. J.

10.1101/172650 — molecular biology — Posted on 2018-05-09

1892 The Junction Usage Model (JUM): A method for comprehensive annotation-free analysis of alternative pre-mRNA splicing patterns

Wang, Q.; Rio, D.

10.1101/116863 — bioinformatics — Posted on 2018-05-09

1893 Online resources for PCAWG data exploration, visualization, and discovery

10.1101/163907 — bioinformatics — Posted on 2018-05-09

1894 Testing soil nematode extraction efficiency using different variations of the Baermann funnel method

Schulz, A. E.; Eisenhauer, N.; Cesarz, S.

10.1101/318691 — ecology — Posted on 2018-05-09

1895 Long-term expanding human airway organoids for disease modelling.

Sachs, N.; Zomer-van Ommen, D. D.; Papaspyropoulos, A.; Heo, I.; Bottinger, L.; Klay, D.; Weeber, F.; Huelsz-Prince, G.; Iakobachvili, N.; Viveen, M. C.; Lyubimova, A.; Teeven, L.; Derakhshan, S.; Korving, J.; Begthel, H.; Kumawat, K.; Ramos, E.; van Oosterhout, M. F. M.; Olimpio, E. P.; de Ligt, J.; Dijkstra, K. K.; Smit, E. F.; van der Linden, M.; Voest, E. E.; van Moorsel, C. H. M.; van der Ent, C. K.; Cuppen, E.; van Oudenaarden, A.; Coenjaerts, F. E.; Meyaard, L.; Bont, L. J.; Peters, P. J.; Tans, S. J.; van Zon, J. S.; Boj, S. F.; Vries, R. G.; Beekman, J. M.; Clevers, H.

10.1101/318444 — cell biology — Posted on 2018-05-09

1896 Local Contractions Test Rigidity of E-Cadherin Adhesions

Yang, Y.; Nguyen, E.; Mege, R.-M.; Ladoux, B.; Sheetz, M. P.

10.1101/318642 — cell biology — Posted on 2018-05-09

1897 Context-dependent environmental adaptation of olfactory receptor abundances

Tesileanu, T.; Cocco, S.; Monasson, R.; Balasubramanian, V.

10.1101/255547 — neuroscience — Posted on 2018-05-09

1898 babette: BEAUti 2, BEAST2 and Tracer for R

Bilderbeek, R. J. C.; Etienne, R. S.

10.1101/271866 — bioinformatics — Posted on 2018-05-09

1899 Assessing macrophyte seasonal dynamics using dense time series of medium resolution satellite data

Villa, P.; Pinardi, M.; Bolpagni, R.; Gillier, J.-M.; Zinke, P.; Nedelcut, F.; Bresciani, M.

10.1101/279448 — ecology — Posted on 2018-05-09

1900 The lost world of Cuatro Cienegas Basin, a relictual bacterial niche in a desert oasis.

Moreno-Letelier, A.; Souza, V.; Travisano, M.; Alcaraz, L. D.; Olmedo, G.; Eguiarte, L. E.

10.1101/311381 — evolutionary biology — Posted on 2018-05-09

1901 DeepRibo: precise gene annotation of prokaryotes using deep learning and ribosome profiling data

Clauwaert, J.; Menschaert, G.; Waegeman, W.

10.1101/317180 — bioinformatics — Posted on 2018-05-09

1902 Nuclear decoupling is part of a rapid protein-level cellular response to high-intensity mechanical loading

Gilbert, H. T.; Mallikarjun, V.; Dobre, O.; Jackson, M. R.; Pedley, R.; Gilmore, A. P.; Richardson, S. M.; Swift, J.

10.1101/317404 — biophysics — Posted on 2018-05-09

1903 The Effect of Berberine on the Transcriptome and Proteome of E. coli

Shilei, Z.; Ze, J.; Xianghe, Z.; Chunguang, W.; Tie, Z.

10.1101/318733 — microbiology — Posted on 2018-05-09

1904 Changing Times: Fluorescence-lifetime Analysis of Amyloidogenic SF-IAPP Fusion Protein

Antimonova, O. I.; Lebedev, D. V.; Zabrodskaya, Y. A.; Grudinina, N. A.; Shavlovsky, M. M.; Egorov, V. V.

10.1101/317917 — biophysics — Posted on 2018-05-09

1905 ANALYZING DWELL TIMES WITH THE GENERALIZED METHOD OF MOMENTS

Piatt, S.; Price, A. C.

10.1101/318717 — biophysics — Posted on 2018-05-09

1906 Soft drinks and monogenetic diabetes: a study on the Wolfram syndrome 1 (Wfs1) deficient mouse model

Porosk, R.; Pintsuk, J.; Punapart, M.; Soomets, U.; Terasmaa, A.; Kilk, K.

10.1101/318683 — biochemistry — Posted on 2018-05-09

1907 Isavuconazole therapeutic drug monitoring associated to a pharmacogenetic exploration is far from being a pharmacologists’ whim

Darnaud, L.; Lamoureux, F.; Godet, C.; Pontier, S.; Debard, A.; Venisse, N.; Martins, P.; Concordet, D.; Gandia, P.

10.1101/316851 — pharmacology and toxicology — Posted on 2018-05-09

1908 Evolutionary emergence of infectious diseases in heterogeneous host populations

Chabas, H.; Lion, S.; Nicot, A.; Meaden, S.; van Houte, S.; Moineau, S.; Wahl, L. M.; Westra, E. R.; Gandon, S.

10.1101/317099 — evolutionary biology — Posted on 2018-05-09

1909 Min-Redundancy and Max-Relevance Multi-view Feature Selection for Predicting Ovarian Cancer Survival using Multi-omics Data

El-Manzalawy, Y.; Hsieh, T.-Y.; Shivakumar, M.; Kim, D.; Honavar, V.

10.1101/317982 — bioinformatics — Posted on 2018-05-09

1910 Increased excitation-inhibition ratio stabilizes synapse and circuit excitability in four autism mouse models.

Antoine, M. W.; Schnepel, P.; Langberg, T.; Feldman, D. E.

10.1101/317693 — neuroscience — Posted on 2018-05-09

1911 Effects of Xiantao sewage treatment on microbial community structure of shallow groundwater in wetland

Song, S.-F.; Gao, X.-F.; Yang, F.

10.1101/316802 — microbiology — Posted on 2018-05-09

1912 Chronic starvation induces non-canonical pro-death stress granules

Reineke, L. C.; Cheema, S. A.; Dubrulle, J.; Neilson, J. R.

10.1101/317529 — cell biology — Posted on 2018-05-09

1913 Dynamics and interactions of ADP/ATP transporter AAC3 in DPC detergent are not functionally relevant

Kurauskas, V.; Hessel, A.; Dehez, F.; Chipot, C.; Bersch, B.; Schanda, P.

10.1101/317669 — biophysics — Posted on 2018-05-09

1914 The Genetic Insulator RiboJ Increases Expression of Insulated Genes

Clifton, K. P.; Jones, E. M.; Paudel, S.; Marken, J. P.; Monette, C. E.; Halleran, A. D.; Epp, L.; Saha, M. S.

10.1101/317875 — synthetic biology — Posted on 2018-05-09

1915 Unexpected versatility in the metabolism and ecophysiology of globally relevant nitrite-oxidizing Nitrotoga bacteria

Boddicker, A.; Mosier, A.

10.1101/317552 — microbiology — Posted on 2018-05-09

1916 Xpert Ultra can unambiguously identify specific rifampicin resistance-conferring mutations

Ng, K. C. S.; van Deun, A.; Meehan, C. J.; Torrea, G.; Driesen, M.; Gabriels, S.; Rigouts, L.; Andre, E.; de Jong, B. C.

10.1101/310094 — microbiology — Posted on 2018-05-09

1917 Why cooperation is not running away

Geoffroy, F.; Baumard, N.; Andre, J.-B.

10.1101/316117 — evolutionary biology — Posted on 2018-05-09

1918 Glioblastoma recurrence and the role of MGMT promoter methylation

Storey, K.; Leder, K.; Hawkins-Daarud, A.; Swanson, K.; Ahmed, A. U.; Rockne, R. C.; Foo, J.

10.1101/317636 — cancer biology — Posted on 2018-05-09

1919 CleanRecomb, a quick tool for recombination detection in SNP based cluster analysis

Kiil, K.; Osterlund, M.

10.1101/317131 — bioinformatics — Posted on 2018-05-09

1920 Automatic Classification of Prostate Cancer Gleason Scores from Digitized Whole Slide Tissue Biopsies

Xu, H.; Park, S.; Hwang, T. H.

10.1101/315648 — bioinformatics — Posted on 2018-05-09

1921 An information theoretic treatment of sequence-to-expression modeling

Khajouei, F.; Sinha, S.

10.1101/316752 — systems biology — Posted on 2018-05-09

1922 Comparative Proteomics Reveals Characteristic Proteins on Praziquantel-resistance in Schistosoma mansoni

Pinto Almeida, A.; Mendes, T.; Ferreira, P.; Belo, S.; Anibal, F. d. F.; Allegretti, S. M.; Carrilho, E.; Afonso, A.

10.1101/314724 — pharmacology and toxicology — Posted on 2018-05-09

1923 Finding informative neurons in the brain using Multi-Scale Relevance

Cubero, R. J. A.; Marsili, M.; Roudi, Y.

10.1101/316190 — neuroscience — Posted on 2018-05-09

1924 Long-term seasonality of marine photoheterotrophic bacteria reveals low cohesiveness within the different phylogroups

Auladell, A.; Sanchez, P.; Sanchez, O.; Gasol, J. M.; Ferrera, I.

10.1101/316059 — microbiology — Posted on 2018-05-09

1925 Haemophilus to meningococci transfer of beta-lactamase

Hong, E.; Deghmane, A.-E.; Taha, M.-K.

10.1101/308056 — microbiology — Posted on 2018-05-09

1926 Recommendations for Interpreting the Loss of Function PVS1 ACMG/AMP Variant Criteria

Abou Tayoun, A.; Pesaran, T.; DiStefano, M.; Oza, A.; Rehm, H.; Biesecker, L.; Harrison, S.; ClinGen Sequence Variant Interpretation Working Group,

10.1101/313718 — genomics — Posted on 2018-05-09

1927 Link Between Short tandem Repeats and Translation Initiation Site Selection.

Arabfard, M.; Kavousi, K.; Delbari, A.; Ohadi, M.

10.1101/316950 — genomics — Posted on 2018-05-09

1928 Sequencing of the Venter/HuRef genome using various strategies for the benchmarking of genome analysis tools

Zhou, B.; Arthur, J. G.; Pattni, R.; Ho, S. S.; Wong, W. H.; Urban, A. E.

10.1101/281709 — genomics — Posted on 2018-05-09

1929 The Complete Chloroplast Genome of Dendrobium nobile, an endangered medicinal orchid from Northeast India and its comparison with related chloroplast genomes of Dendrobium species.

Konhar, R.; Debnath, M.; Vishwakarma, S.; Bhattacharjee, A.; Sundar, D.; Tandon, P.; Biswal, D. K.

10.1101/316778 — evolutionary biology — Posted on 2018-05-09

1930 Adipose tissue in health and disease through the lens of its building blocks

Lenz, M.; Arts, I. C.; Peeters, R. L.; de Kok, T. M.; Ertaylan, G.

10.1101/316083 — systems biology — Posted on 2018-05-09

1931 Vascular brassinosteroid receptors confer drought resistance without penalizing plant growth

Fabregas, N.; Lozano-Elena, F.; Blasco-Escamez, D.; Tohge, T.; Martinez-Andujar, C.; Albacete, A.; Osorio, S.; Bustamante, M.; Riechmann, J. L.; Conesa, A.; Alfocea, F. P.; Fernie, A.; Cano-Delgado, A.

10.1101/318287 — plant biology — Posted on 2018-05-09

1932 Connecting the dots between computational tools to analyse soil-root water relations

Passot, S.; Couvreur, V.; Meunier, F.; Draye, X.; Javaux, M.; Leitner, D.; Pages, L.; Schnepf, A.; Vanderborght, J.; Lobet, G.

10.1101/312918 — plant biology — Posted on 2018-05-09

1933 Improved estimation of macroevolutionary rates from fossil data using a Bayesian framework

Silvestro, D.; Antonelli, A.; Salamin, N.; Meyer, X.

10.1101/316992 — paleontology — Posted on 2018-05-09

1934 The spectral identity of foveal cones is preserved in hue perception

Schmidt, B. P.; Boehm, A. E.; Foote, K. G.; Roorda, A.

10.1101/317750 — neuroscience — Posted on 2018-05-09

1935 The Dance of the Interneurons: How Inhibition Facilitates Fast Compressible and Reversible Learning in Hippocampus

Nicola, W.; Clopath, C.

10.1101/318303 — neuroscience — Posted on 2018-05-09

1936 The Membranous Labyrinth in vivo from high-resolution Temporal CT data

Tanioka, H.

10.1101/318030 — neuroscience — Posted on 2018-05-09

1937 More is Better: Using Machine Learning Techniques and Multiple EEG Metrics to Increase Preference Prediction Above and Beyond Traditional Measurements

Hakim, A.; Klorfeld, S.; Sela, T.; Friedman, D.; Shabat-Simon, M.; Levy, D. J.

10.1101/317073 — neuroscience — Posted on 2018-05-09

1938 dACC Response to Presentation of Negative Feedback Identifies Stimulant Dependence Diagnoses and Stimulant Use Severity

Shane, M. S.; Claus, E. D.

10.1101/317990 — neuroscience — Posted on 2018-05-09

1939 PySight: plug and play photon counting for fast intravital microscopy

Har-Gil, H.; Golgher, L.; Israel, S.; Kain, D.; Cheshnovksy, O.; Parnas, M.; Blinder, P.

10.1101/316125 — neuroscience — Posted on 2018-05-09

1940 Epidemiology, Microbiology and Therapeutic Consequences of Chronic Osteomyelitis in Northern China: A Retrospective Analysis of 255 Patients

Ma, X.; Han, S.; Ma, J.; Chen, X.; Bai, W.; Yan, W.; Wang, K.

10.1101/316836 — microbiology — Posted on 2018-05-09

1941 Microbial Biomarkers of Intestinal Barrier Maturation in Preterm Infants

Ma, B.; McComb, E.; Gajer, P.; Yang, H.; Humphrys, M.; Okogbule-Wonodi, A. C.; Fasano, A.; Ravel, J.; Viscardi, R. M.

10.1101/316257 — microbiology — Posted on 2018-05-09

1942 N-terminal degradation activates the Nlrp1b inflammasome

Bachovchin, D.; Chui, A. J.; Okondo, M.; Rao, S.; Gai, K.; Griswold, A.; Vittimberga, B.

10.1101/317826 — immunology — Posted on 2018-05-09

1943 The landscape and diagnostic potential of T and B cell repertoire in Immunoglobulin A Nephropathy

Liu, X.; Huang, C.; Li, X.; Wu, J.; Zhang, W.; Sun, S.; Lin, L.; Wang, X.; Li, H.; Wu, X.; Zhang, P.; Xu, G.; Wan, H.; Liu, H.; Liu, Y.; Chen, D.; Zhuo, L.; Yang, H.; Wang, J.; Wang, L.

10.1101/316216 — immunology — Posted on 2018-05-09

1944 Functional degradation: a mechanism of NLRP1 inflammasome activation by diverse pathogen enzymes

Sandstrom, A.; Mitchell, P. S.; Goers, L.; Mu, E. W.; Lesser, C. F.; Vance, R. E.

10.1101/317834 — immunology — Posted on 2018-05-09

1945 Global landscape of mouse and human cytokine transcriptional regulation

Carrasco Pro, S.; Dafonte Imedio, A.; Santoso, C. S.; Gan, K. A.; Sewell, J. A.; Martinez, M.; Sereda, R.; Mehta, S.; Fuxman Bass, J. I.

10.1101/316612 — immunology — Posted on 2018-05-09

1946 The Clinical Imperative for Inclusivity: Race, Ethnicity, and Ancestry (REA) in Genomics

Popejoy, A. B.; Ritter, D. I.; Crooks, K.; Currey, E.; Fullerton, S. M.; Hindorff, L. A.; Koenig, B.; Ramos, E. M.; Sorokin, E. P.; Wand, H.; Wright, M. W.; Zou, J.; Gignoux, C. R.; Bonham, V. L.; Plon, S. E.; Bustamante, C. D.; The Clinical Genome Resource (ClinGen) Ancestry and Diversity Working Group (ADWG),

10.1101/317800 — genomics — Posted on 2018-05-09

1947 Specific Oxylipins Enhance Vertebrate Hematopoiesis via the Receptor GPR132

Lahvic, J. L.; Ammerman, M.; Li, P.; Blair, M. C.; Stillman, E.; Robertson, A. L.; Christodoulou, C.; Perlin, J. R.; Yang, S.; Chiang, N.; Norris, P. C.; Daily, M. L.; Redfield, S. E.; Chan, I. T.; Chatrizeh, M.; Chase, M. E.; Weis, O.; Zhou, Y.; Serhan, C. N.; Zon, L. I.

10.1101/313403 — developmental biology — Posted on 2018-05-09

1948 TMEM106B, a risk factor for FTLD and aging, has an intrinsically disordered cytoplasmic domain

Kang, J.; Lim, L.; Song, J.

10.1101/317958 — biophysics — Posted on 2018-05-09

1949 Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants

Garcia, M.; Juhos, S.; Larsson, M.; Olason, P. I.; Martin, M.; Eisfeldt, J.; DiLorenzo, S.; Sandgren, J.; Diaz de Stahl, T.; Wirta, V.; Nister, M.; Nystedt, B.; Käller, M.

10.1101/316976 — bioinformatics — Posted on 2018-05-09

1950 Easily phylotyping E. coli via the EzClermont web app and command-line tool.

Waters, N.; Brennan, F.; Holmes, A.; Abram, F.; Pritchard, L.

10.1101/317610 — bioinformatics — Posted on 2018-05-09

1951 Binding specificities of human RNA binding proteins towards structured and linear RNA sequences

Jolma, A.; Zhang, J.; Mondragon, E.; Kivioja, T.; Yin, Y.; Zhu, F.; Morris, Q.; Hughes, T. R.; Maher, L. J.; Taipale, J.

10.1101/317909 — biochemistry — Posted on 2018-05-09

1952 A Neural Ensemble Correlation Code for Sound Category Identification

Sadeghi, M.; Zhai, X.; Stevenson, I. H.; Escabi, M.

10.1101/317735 — neuroscience — Posted on 2018-05-09

1953 Construction and Elaboration of Autobiographical Memories from Multiple Visual Perspectives

Iriye, H.; St. Jacques, P. L.

10.1101/317594 — neuroscience — Posted on 2018-05-09

1954 A legacy role for DNA binding of Lon protects against genotoxic stress

Zeinert, R. D.; Liu, J.; Yang, Q.; Du, Y.; Haynes, C.; Chien, P.

10.1101/317677 — microbiology — Posted on 2018-05-09

1955 How Much Information is Provided by Human Epigenomic Data? An Evolutionary View

Gulko, B.; Siepel, A.

10.1101/317719 — genomics — Posted on 2018-05-09

1956 Changing Times: Fluorescence-lifetime Analysis of Amyloidogenic SF-IAPP Fusion Protein

Antimonova, O. I.; Lebedev, D. V.; Zabrodskaya, Y. A.; Grudinina, N. A.; Shavlovsky, M. M.; Egorov, V. V.

10.1101/317917 — biophysics — Posted on 2018-05-09

1957 Network Enhancement: a general method to denoise weighted biological networks

Wang, B.; Pourshafeie, A.; Zitnik, M.; Zhu, J.; Bustamante, C.; Batzoglou, S.; Leskovec, J.

10.1101/317941 — bioinformatics — Posted on 2018-05-09

1958 An In Silico Model of DNA Repair for Investigation of Mechanisms in Non-Homologous End Joining

Warmenhoven, J. W.; Henthorn, N. T.; Sotiropoulos, M.; Korabel, N.; Fedotov, S.; Mackay, R. I.; Kirkby, K. J.; Merchant, M. J.

10.1101/318139 — systems biology — Posted on 2018-05-09

1959 S phase R-loop formation is restricted by PrimPol-mediated repriming

Svikovic, S.; Crisp, A.; Tan-Wong, S. M.; Guilliam, T. A.; Doherty, A. J.; Proudfoot, N. J.; Guilbaud, G.; Sale, J. E.

10.1101/318220 — molecular biology — Posted on 2018-05-09

1960 Combined use of procalcitonin and C-reactive protein levels can help clinically diagnose bacterial co-infections in children infected with H1N1 influenza

li, z.; he, l.; Li, S.; he, W.; zha, C.; Hou, Q.; Wang, W.; Sun, X.; Liang, H.; Ou, W.

10.1101/318063 — microbiology — Posted on 2018-05-09

1961 Genetic basis of variation in heat and ethanol tolerance in Saccharomyces cerevisiae

Riles, L.; Fay, J. C.

10.1101/318212 — genetics — Posted on 2018-05-09

1962 Enhancing the translational capacity of E. coli by resolving the codon bias

Gyorfy, Z.; Lipinszki, Z.; Vernyik, V.; Farago, N.; Sari, T.; Puskas, L. G.; Blattner, F.; Posfai, G.

10.1101/318105 — synthetic biology — Posted on 2018-05-09

1963 Sensitive detection of Live Escherichia coli by bacteriophage amplification-coupled immunoassay on the Luminex(R) MAGPIX instrument

Mido, T.; Schaffer, E. M.; Dorsey, R. W.; Sozhamannan, S.; Hofmann, E. R.

10.1101/318071 — microbiology — Posted on 2018-05-09

1964 Sequence variation of rare outer membrane protein β-barrel domains in clinical strains provides insights into the evolution of Treponema pallidum subsp. pallidum, the syphilis spirochete.

Kumar, S.; Caimano, M. J.; Anand, A.; Dey, A.; Hawley, K. L.; LeDoyt, M.; La Vake, C.; Cruz, A. R.; Ramirez, L. G.; Pastekova, L.; Bezsonova, I.; Smajs, D.; Salazar, J. C.; Radolf, J. D.

10.1101/318097 — microbiology — Posted on 2018-05-09

1965 Type IV collagen is essential for proper function of integrin-mediated adhesion in Drosophila muscle fibers

Kiss, A. A.; Popovics, N.; Marton, K.; Boldogkoi, Z.; Csiszar, K.; Mink, M.

10.1101/318337 — genetics — Posted on 2018-05-09

1966 Psychosocial stress and central adiposity: A Brazilian study with users of the public health system

Freitas, F. V.; Barbosa, W.; Silva, L.; Garozi, M.; Pinheiro, J.; Borcoi, A.; Conti, C.; Arpini, J.; Paula, H.; Oliveira, M.; Archanjo, A.; Freitas, E.; Oliveira, D.; Borloti, E.; Louro, I. D.; Alvares-da-Silva, A.

10.1101/317891 — genetics — Posted on 2018-05-09

1967 Actin cytoskeleton self-organization in single epithelial cells and fibroblasts under isotropic confinement

Jalal, S.; Huang, R. Y.-J.; Viasnoff, V.; Tee, Y. H.; Bershadsky, A.

10.1101/318022 — cell biology — Posted on 2018-05-09

1968 Variants of DNMT3A cause transcript-specific DNA methylation patterns and affect hematopoietic differentiation

Bozic, T.; Frobel, J.; Raic, A.; Ticconi, F.; Kuo, C.-C.; Heilmann-Heimbach, S.; Goecke, T. W.; Zenke, M.; Jost, E.; Gesteira Costa Filho, I.; Wagner, W.

10.1101/318188 — cell biology — Posted on 2018-05-09

1969 Family-based haplotype estimation and allele dosage correction for polyploids using short sequence reads

Motazedi, E.; Finkers, R.; Maliepaard, C.; de Ridder, D.

10.1101/318196 — bioinformatics — Posted on 2018-05-09

1970 Electrostatic repulsion causes anticooperative DNA binding between tumor suppressor ETS transcription factors and JUN-FOS at composite DNA sites

Madison, B. J.; Clark, K. A.; Bhachech, N.; Hollenhorst, P. C.; Graves, B. J.; Currie, S. L.

10.1101/318048 — biochemistry — Posted on 2018-05-09

1971 Stabilized Independent Component Analysis outperforms other methods in finding reproducible signals in tumoral transcriptomes

Cantini, L.; Kairov, U.; de Reynies, A.; Barillot, E.; Radvanyi, F.; Zinovyev, A.

10.1101/318154 — systems biology — Posted on 2018-05-09

1972 A novel role of VisP and Wzz system during O-antigen assembly in Salmonella Typhimurium pathogenesis

da Silva, P.; Manieri, F. Z.; Herrera, C.; Trent, M. S.; Moreira, C. G.

10.1101/318089 — microbiology — Posted on 2018-05-09

1973 Color depth MIP mask search: a new tool to expedite Split-GAL4 creation

Otsuna, H.; Ito, M.; Kawase, T.

10.1101/318006 — bioinformatics — Posted on 2018-05-09

1974 Salmonella-vectored vaccine delivering three Clostridium perfringens antigens protects poultry against necrotic enteritis.

Wilde, S.; Jiang, Y.; Tafoya, A. M.; Horsman, J.; Yousif, M.; Vazquez, L. A.; Roland, K. L.

10.1101/318469 — microbiology — Posted on 2018-05-09

1975 A guide to using a multiple-matrix animal model to disentangle genetic and nongenetic causes of phenotypic variance

Thomson, C. E.; Winney, I. S.; Salles, O.; Pujol, B.

10.1101/318451 — evolutionary biology — Posted on 2018-05-09

1976 Genetic Dissection of Haploid Male Fertility in Maize (Zea mays L.)

Yang, J.; Li, H.; Qu, Y.; Chen, Q.; Tang, J.; lübberstedt, T.; Liu, Z.

10.1101/318386 — genetics — Posted on 2018-05-09

1977 Establishment and equilibrium levels of deleterious mutations in large populations

Viljoen, J. W.; de Villiers, P.; van Zyl, A. J.; Mezzavilla, M.; Pepper, M. S.

10.1101/318428 — genetics — Posted on 2018-05-09

1978 Selective sweeps under dominance and self-fertilisation

Hartfield, M.; Bataillon, T.

10.1101/318410 — evolutionary biology — Posted on 2018-05-09

1979 A systems biology approach uncovers the core gene regulatory network governing iridophore fate choice from the neural crest.

Petratou, K.; Subkhankulova, T.; Lister, J. A.; Rocco, A.; Schwetlick, H.; Kelsh, R. N.

10.1101/318402 — developmental biology — Posted on 2018-05-09

1980 An EST-SSR based genetic linkage map and identification of QTLs for anthracnose disease resistance in water yam (Dioscorea alata L.)

Bhattacharjee, R.; Nwadili, C. O.; Saski, C. A.; Paterne, A.; Scheffler, B. E.; Augusto, J.; Lopez-Montes, A.; Onyeka, J. T.; P, L. K.; Bandyopadhyay, R.; No,

10.1101/318378 — molecular biology — Posted on 2018-05-09

1981 Evolution of shell flattening and the loss of coiling in top shells (Gastropoda: Trochidae: Fossarininae) on wave-swept rock reefs

Yamamori, L.; Kato, M.

10.1101/318394 — evolutionary biology — Posted on 2018-05-09

1982 Decoupling the impact of microRNAs on translational repression versus RNA degradation in embryonic stem cells

Freimer, J.; Hu, T.; Blelloch, R.

10.1101/316679 — genetics — Posted on 2018-05-08

1983 Estrogen Signaling in Arcuate Kiss1 Neurons Suppresses a Sex-Dependent Circuit That Promotes Dense Strong Bones in Female Mice

Herber, C. B.; Krause, W. C.; Wang, L.; Bayrer, J. R.; Li, A.; Schmitz, M. T.; Fields, A.; Ford, B.; Reid, M. S.; Nomura, D. K.; Nissenson, R. A.; Correa, S. M.; Ingraham, H. A.

10.1101/315283 — physiology — Posted on 2018-05-08

1984 Precision Identification of Diverse Bloodstream Pathogens from the Gut Microbiome

Tamburini, F. B.; Andermann, T. M.; Tkachenko, E.; Senchyna, F.; Banaei, N.; Bhatt, A. S.

10.1101/310441 — genomics — Posted on 2018-05-08

1985 Direct RNA Sequencing of the Complete Influenza A Virus Genome

Keller, M. W.; Rambo-Martin, B. L.; Wilson, M. M.; Ridenour, C. A.; Shepard, S. S.; Stark, T. J.; Neuhaus, E. B.; Dugan, V. G.; Wentworth, D. E.; Barnes, J. R.

10.1101/300384 — genomics — Posted on 2018-05-08

1986 The effects of haploid selection on Y chromosome evolution in two closely related dioecious plants

Sandler, G.; Beaudry, F. E. G.; Barrett, S. C. H.; Wright, S. I.

10.1101/264382 — evolutionary biology — Posted on 2018-05-08

1987 Antagonizing the corticotropin releasing hormone receptor 1 with antalarmin reduces the progression of endometriosis.

Torres-Reveron, A.; Rivera-Lopez, L. L.; Flores, I.; Appleyard, C. B.

10.1101/317867 — physiology — Posted on 2018-05-08

1988 Regulation of trophic architecture across spatial scales in a major river network

Harvey, E.; Altermatt, F.

10.1101/317644 — ecology — Posted on 2018-05-08

1989 Optogenetic dissection of Rac1 and Cdc42 gradient shaping

de Beco, S.; Vaidziulyte, K.; Manzi, J.; Dalier, F.; Di Frederico, F.; Cornilleau, G.; Dahan, M.; Coppey, M.

10.1101/317586 — cell biology — Posted on 2018-05-08

1990 Nurtured by nature: Considering the role of environmental and parental legacies in coral ecological performance

Putnam, H. M.; Ritson-Williams, R.; Cruz, J. A.; Davidson, J. M.; Gates, R. D.

10.1101/317453 — physiology — Posted on 2018-05-08

1991 Omitted variable bias in GLMs of neural spiking activity

Stevenson, I. H.

10.1101/317511 — neuroscience — Posted on 2018-05-08

1992 Amycomicin: a potent and specific antibiotic discovered with a targeted interaction screen

Pishchany, G.; Mevers, E.; Ndousse-Fetter, S.; Horvath, D. J.; Paludo, C. R.; Silva-Junior, E. A.; Koren, S.; Skaar, E. P.; Clardy, J.; Kolter, R.

10.1101/317362 — microbiology — Posted on 2018-05-08

1993 Adventitious viruses persistently infect three commonly used mosquito cell lines

Weger-Lucarelli, J.; Rückert, C.; Grubaugh, N. D.; Misencik, M. J.; Armstrong, P. M.; Stenglein, M. D.; Ebel, G. D.; Brackney, D.

10.1101/317628 — microbiology — Posted on 2018-05-08

1994 BZLF1 interacts with the chromatin remodeler INO80 promoting escape from latent infections with Epstein-Barr virus

Schaeffner, M.; Mrozek-Gorska, P.; Woellmer, A.; Tagawa, T.; Buschle, A.; Krietenstein, N.; Lieleg, C.; Korber, P.; Hammerschmidt, W.

10.1101/317354 — microbiology — Posted on 2018-05-08

1995 \"In plaque-mass spectrometry imaging\" reveals a major metabolic shift towards odd-chain fatty acid lipids induced by host-virus interactions

Schleyer, G.; Shahaf, N.; Ziv, C.; Dong, Y.; Meoded, R. A.; Helfrich, E. J. N.; Schatz, D.; Rosenwasser, S.; Rogachev, I.; Aharoni, A.; Piel, J.; Vardi, A.

10.1101/317206 — microbiology — Posted on 2018-05-08

1996 Robust Design for Coalescent Model Inference

Parag, K. V.; Pybus, O. G.

10.1101/317438 — bioinformatics — Posted on 2018-05-08

1997 SupportNet: a novel incremental learning framework through deep learning and support data

Li, Y.; Li, Z.; Ding, L.; Hu, Y.; Chen, W.; Gao, X.

10.1101/317578 — bioinformatics — Posted on 2018-05-08

1998 Spinal astrocyte-neuron lactate shuttle contributes to the PACAP/PAC1 receptor-induced nociceptive behaviors

Kurihara, T.; Kambe, Y.; Yokai, M.; Takasaki, I.; Miyata, A.

10.1101/317156 — neuroscience — Posted on 2018-05-08

1999 Epigenetic regulation affects fertility in Drosophila: toward the production of infertility models.

Kohzaki, H.; Asano, M.; Murakami, Y.; Mazo, A.

10.1101/317123 — molecular biology — Posted on 2018-05-08

2000 DeepRibo: precise gene annotation of prokaryotes using deep learning and ribosome profiling data

Clauwaert, J.; Menschaert, G.; Waegeman, W.

10.1101/317180 — bioinformatics — Posted on 2018-05-08

2001 The Effects of Different Vibration Frequencies, Amplitudes and Contraction Levels on Lower Limb Muscles during Graded Isometric Contractions Superimposed on Whole Body Vibration Stimulation

Pujari, A. N.; Neilson, R. D.; Cardinale, M.

10.1101/317602 — bioengineering — Posted on 2018-05-08

2002 Human personality reflects spatio-temporal and time-frequency EEG structure

Pisarchik, A. N.; Runnova, A. E.; Maksimenko, V. A.; Zhuravlev, M. O.; Protasov, P.; Kulanin, R.; Khramova, M. V.; Khramov, A. E.

10.1101/317032 — neuroscience — Posted on 2018-05-08

2003 Iodine status of children and Knowledge, Attitude, Practice of Iodised salt use in a remote community in Kerema district, Gulf province, Papua New Guinea

Temple, V. J.; Goris, J. M.; Zomerdijk, N.; Codling, K.

10.1101/317230 — epidemiology — Posted on 2018-05-08

2004 The chloroplast 2-cysteine peroxiredoxin functions as thioredoxin oxidase in redox regulation of chloroplast metabolism

Vaseghi, M.-J.; Chibani, K.; Telman, W.; Liebthal, M. F.; Gerken, M.; Mueller, S. M.; Dietz, K.-J.

10.1101/317107 — plant biology — Posted on 2018-05-08

2005 Data-based, synthesis-driven: setting the agenda for computational ecology

Poisot, T.; Labrie, R.; Larson, E.; Rahlin, A.

10.1101/150128 — ecology — Posted on 2018-05-08

2006 Bringing plants and soils to life through a simple role-playing activity

Van Nuland, M. E.; Chen, M.; England, B. J.

10.1101/171009 — scientific communication and education — Posted on 2018-05-08

2007 Dew-induced transpiration suppression impacts the water and isotope balances of Colocasia leaves

Gerlein-Safdi, C.; Gauthier, P. P. G.; Caylor, K. K.

10.1101/178293 — plant biology — Posted on 2018-05-08

2008 Tropical forest refuge in peripheral soils of slags in Caatinga

Souza, J. J.; Souza, B. I.; Queiroz, R. T.; Lunguinho, R. L.; Medeiros, J. R.; Cardoso, E. C. M.; Silva, P. A. M.; Oliveira, H. C.

10.1101/317685 — systems biology — Posted on 2018-05-08

2009 A cosine similarity-based method to infer variability of chromatin accessibility at the single-cell level

Cai, S.; Georgakilas, G. K.; Johnson, J. L.; Vahedi, G.

10.1101/315028 — genomics — Posted on 2018-05-08

2010 The dynamics of preferential host switching: host phylogeny as a key predictor of parasite prevalence and distribution

Engelstaedter, J.; Fortuna, N. Z.

10.1101/209254 — evolutionary biology — Posted on 2018-05-08

2011 Continuous interdomain orientation distributions reveal components of binding thermodynamics

Qi, Y.; Martin, J. W.; Barb, A. W.; Thelot, F.; Yan, A.; Donald, B. R.; Oas, T. G.

10.1101/200238 — biophysics — Posted on 2018-05-08

2012 Hox-logic of body plan innovations for social symbiosis in rove beetles

Parker, J.; Eldredge, K. T.; Thomas, I.; Coleman, R.; Davis, S.

10.1101/198945 — evolutionary biology — Posted on 2018-05-08

2013 Estimating sleep parameters using an accelerometer without sleep diary

van Hees, V. T.; Sabia, S.; Jones, S. E.; Wood, A. R.; Anderson, K. N.; Kivimaki, M.; Frayling, T. M.; Pack, A. I.; Bucan, M.; Mazzotti, D. R.; Gehrman, P. R.; Singh-Manoux, A.; Weedon, M. N.

10.1101/257972 — epidemiology — Posted on 2018-05-08

2014 Identifying Important Interaction Modifications in Ecological Systems

Terry, C.; Bonsall, M. B.; Morris, R. J.

10.1101/228874 — ecology — Posted on 2018-05-08

2015 GITAR: an Open Source Tool for Analysis and Visualization of Hi-C Data

Calandrelli, R.; Wu, Q.; Guan, J.; Zhong, S.

10.1101/259515 — bioinformatics — Posted on 2018-05-08

2016 Genotypic and phenotypic diversity within the neonatal HSV-2 population

Akhtar, L. N.; Bowen, C. D.; Renner, D. W.; Pandey, U.; Della Fera, A. N.; Kimberlin, D. W.; Prichard, M. N.; Whitley, R. J.; Weitzman, M. D.; Szpara, M. L.

10.1101/262055 — microbiology — Posted on 2018-05-08

2017 Dystroglycan proteolysis is conformationally-regulated and disrupted by disease-associated mutations

Hayward, A. N.; Gordon, W. R.

10.1101/279315 — cell biology — Posted on 2018-05-08

2018 Conservation and divergence in modules of the transcriptional programs of the human and mouse immune systems

Shay, T.; Jojic, V.; Zuk, O.; Benoist, C.; Koller, D.; Regev, A.; ImmGen Consortium,

10.1101/286211 — bioinformatics — Posted on 2018-05-08

2019 Crunch: Integrated processing and modeling of ChIP-seq data in terms of regulatory motifs

Berger, S.; Omidi, S.; Pachkov, M.; Arnold, P.; Kelley, N.; Salatino, S.; van Nimwegen, E.

10.1101/042903 — bioinformatics — Posted on 2018-05-08

2020 Short Tandem Repeat stutter model inferred from direct measurement of in vitro stutter noise

Raz, O.; Biezuner, T.; Spiro, A.; Amir, S.; Milo, L.; Titelman, A.; Onn, A.; Chapal-Ilani, N.; Tao, L.; Marx, T.; Feige, U.; Shapiro, E.

10.1101/065110 — bioinformatics — Posted on 2018-05-08

2021 Sparse recurrent excitatory connectivity in the microcircuit of the adult mouse and human cortex

10.1101/292706 — neuroscience — Posted on 2018-05-08

2022 Cargo-Loading of Misfolded Proteins into Extracellular Vesicles: The Role of J Proteins

Pink, D.; Donnelier, J.; Lewis, J.; Braun, J. E. A.

10.1101/310219 — neuroscience — Posted on 2018-05-08

2023 The Use of Visual Cues in Gravity Judgements on Parabolic Motion.

Joerges, B.; Slupinski, L.; Lopez-Moliner, J.

10.1101/301077 — neuroscience — Posted on 2018-05-08

2024 Phase Separations Driven by RNA Scaffolds and Protein Sequestration in FXTAS

Botta-Orfila, T.; Cid-Samper, F.; Gelabert-Baldrich, I.; Lang, B.; Lorenzo-Gotor, N.; Delli Ponti, R.; WFM Severijnen, L.-A.; Bolognesi, B.; Gelpi, E.; Hukema-Felten, R. K.; Tartaglia, G. G.

10.1101/298943 — molecular biology — Posted on 2018-05-08

2025 Interneuronal gap junctions increase synchrony and robustness of hippocampal ripple oscillations

Holzbecher, A.; Kempter, R.

10.1101/311662 — neuroscience — Posted on 2018-05-08

2026 Anti-BP180 Autoantibodies Are Present in Stroke and Recognize Human Cutaneous BP180 and BP180-NC16A

Wang, Y.; Mao, X.; Wang, D.; Hammers, C. M.; Payne, A. S.; Wang, Y.; Jin, H.; Peng, B.; Li, L.

10.1101/313692 — neuroscience — Posted on 2018-05-08

2027 A functional different immune capacity in cattle is associated with higher mastitis incidence

Lutterberg, K.; Kleinwort, K. J. H.; Hobmaier, B. F.; Hauck, S. M.; Nueske, S.; Scholz, A. M.; Deeg, C. A.

10.1101/311316 — immunology — Posted on 2018-05-08

2028 Analysis of the human kinome and phosphatome reveals diseased signaling networks induced by overexpression

Lun, X.-K.; Szklarczyk, D.; Gabor, A.; Dobberstein, N.; Zanotelli, V. R. T.; Saez-Rodriguez, J.; von Mering, C.; Bodenmiller, B.

10.1101/314716 — systems biology — Posted on 2018-05-08

2029 Multilabel multiclass classification of OCT images augmented with age, gender and visual acuity data

Mehta, P.; Lee, A. Y.; Lee, C.; Balazinska, M.; Rokem, A.

10.1101/316349 — physiology — Posted on 2018-05-08

2030 A cosine similarity-based method to infer variability of chromatin accessibility at the single-cell level

Cai, S.; Georgakilas, G. K.; Johnson, J. L.; Vahedi, G.

10.1101/315028 — genomics — Posted on 2018-05-08

2031 ANTI-MICROBIAL RESISTANCE IN AGENTS CAUSING URINARY TRACT INFECTIONS

RIZVI, Z. A.; Jamal, A. M.; Malik, A. H.; Arshad, D.; Ullah, N.

10.1101/316869 — microbiology — Posted on 2018-05-08

2032 Methylation patterns reveal cryptic structure and a pathway for adaptation in a panmictic carnivore

Johnson, J. B.; Murray, D. L.; Shafer, A. B. A.

10.1101/316711 — genomics — Posted on 2018-05-08

2033 Expert Specification of the ACMG/AMP Variant Interpretation Guidelines for Genetic Hearing Loss

Oza, A.; DiStefano, M.; Hemphill, S.; Cushman, B.; Grant, A.; Siegert, R.; Shen, J.; Chapin, A.; Boczek, N.; Schimmenti, L.; Murry, J.; Hasadsri, L.; Nara, K.; Kenna, M.; Booth, K.; Azaiez, H.; Griffith, A.; Avraham, K.; Kremer, H.; Rehm, H.; Amr, S.; Abou Tayoun, A.; The ClinGen Hearing Loss Expert Workgroup,

10.1101/313734 — genetics — Posted on 2018-05-08

2034 Mixed-cropping systems of different rice cultivars have grain yield and quality advantages over mono-cropping systems

Li, M.; Zhang, J.-e.; Liu, S.; Ashraf, U.; Qiu, S.

10.1101/317545 — ecology — Posted on 2018-05-08

2035 CRISPR screen reveals that EHEC’s T3SS and Shiga toxin rely on shared host factors for infection

Pacheco, A. R.; Lazarus, J. E.; Sit, B.; Schmieder, S.; Lencer, W.; Blondel, C. J.; Doench, J.; Davis, B. M.; Waldor, M. K.

10.1101/316919 — microbiology — Posted on 2018-05-08

2036 Tracking Borrelia afzelii from infected Ixodes ricinus nymphs to mice suggests a direct ‘gut-to-mouth’ route of Lyme disease transmission

Pospisilova, T.; Urbanova, V.; Hes, O.; Kopacek, P.; Hajdusek, O.; Sima, R.

10.1101/316927 — microbiology — Posted on 2018-05-08

2037 Polymer brush bilayers at thermal equilibrium: A theoretical approach

Farzin, M.

10.1101/316141 — biophysics — Posted on 2018-05-08

2038 Robotic selection for the rapid development of stable CHO cell lines for HIV vaccine for production

O'Rourke, S. M.; Byrne, G.; Gwen, T.; Meredith, W.; Yu, B.; Mesa, K. A.; Doran, R. C.; Alexander, D.; Berman, P. W.

10.1101/317537 — bioengineering — Posted on 2018-05-08

2039 Amazon Mechanical Turk as a platform for borderline personality disorder research

Collison, K. L.; Lesser, R. E.; Stahl, D. S.; Robinson, E.; Miller, J.; Lynam, D.; Fineberg, S.

10.1101/316356 — animal behavior and cognition — Posted on 2018-05-08

2040 Hookworm-derived small molecule extracts suppress pathology in a mouse model of colitis and inhibit secretion of key inflammatory cytokines in primary human leukocytes

Wangchuk, P.; Constantinoiu, C.; Kouremenos, K. A.; Becker, L.; Jones, L.; Shepherd, C.; Buitrago, G.; Giacomin, P.; Daly, N. L.; McConville, M. J.; Ryan, R.; Miles, J.; Loukas, A.

10.1101/316885 — microbiology — Posted on 2018-05-08

2041 Structural variability and functional association in the epiphytic bacteria assemblies of freshwater macrophytes (Myriophyllum spicatum)

Xian, L.; Wan, T.; Cao, Y.; Sun, J.; Wu, T.; Zhao, S.; Apodu, A. A.; Li, W.; Liu, F.

10.1101/316893 — microbiology — Posted on 2018-05-08

2042 Bayesian Multi-SNP Genetic Association Analysis: Control of FDR and Use of Summary Statistics

Lee, Y.; Francesca, L.; Pique-Regi, R.; Wen, X.

10.1101/316471 — genetics — Posted on 2018-05-08

2043 The Effects of Vancomycin on the Viability and Osteogenic Potential of Bone-derived Mesenchymal Stem Cells

Booysen, E.; Sadie-Van Gijsen, H.; Deane, S. M.; Ferris, W. F.; Dicks, L. M.

10.1101/316810 — microbiology — Posted on 2018-05-08

2044 MiRNA expression profiles of serum exosomes derived from individuals with latent and active tuberculosis

Lyu, L.; Wang, J.; Jia, H.-y.; Pan, L.; Li, Z.-h.; Du, F.-j.; Du, B.-p.; Sun, Q.; Zhang, Z.-d.

10.1101/316794 — microbiology — Posted on 2018-05-08

2045 Reducing blood culture contamination using an initial specimen diversion device

Zimmerman, F. S.; Assous, M. V.; Zevin, S.; Wiener-Well, Y.

10.1101/316844 — microbiology — Posted on 2018-05-08

2046 Genome assembly and gene expression in the American black bear provides new insights into the renal response to hibernation.

Srivastiva, A.; Sarsani, V.; Fiddes, I.; Sheehan, S.; Seger, R.; Barter, M.; Neptune-Bear, S.; Lindqvist, C.; Brody, L.; Mullikin, J.; Korstanje, R.

10.1101/316596 — genomics — Posted on 2018-05-08

2047 Robust Reference Powered Association Test of genome-wide association studies

Wang, Y.; Li, Y.; Hao, M.; Liu, X.; Zhang, M.; Xiong, M.; Wang, J.; Shugart, Y. Y.; Jin, L.

10.1101/316703 — genetics — Posted on 2018-05-08

2048 Seed selection strategies for overlap detection

Teutenberg, J.

10.1101/316273 — bioinformatics — Posted on 2018-05-08

2049 A Scoring System to Evaluate the Impact of SNPs in a Path Related Context to Study Behçet’s Disease Aetiology in Japanese Population

Ozisik, O.; Meguro, A.; Mizuki, N.; Diri, B.; Sezerman, O. U.

10.1101/316562 — bioinformatics — Posted on 2018-05-08

2050 Misfolded proteins share a common capacity in disrupting LLPS organizing membrane-less organelles

Kang, J.; Lim, L.; Song, J.

10.1101/317347 — biophysics — Posted on 2018-05-08

2051 Spontaneous and coordinated Ca2+ activity of cochlear sensory and non-sensory cells drives the maturation of OHC afferent innervation

Ceriani, F.; Hendry, A.; Jeng, J.-Y.; Johnson, S.; Olt, J.; Holley, M. C.; Mammano, F.; Kros, C. J.; Simmons, D. D.; Marcotti, W.

10.1101/317172 — neuroscience — Posted on 2018-05-08

2052 CSB-dependent CDK9 degradation and RNA Polymerase II phosphorylation during Transcription Coupled Repair

Donnio, L.-M.; Lagarou, A.; Sueur, G.; MARI, P.-O.; Giglia-Mari, G.

10.1101/316935 — cell biology — Posted on 2018-05-08

2053 PLK1 plays dual roles in centralspindlin regulation during cytokinesis

Adriaans, I. E.; Basant, A.; Ponsioen, B.; Glotzer, M.; Lens, S.

10.1101/317388 — cell biology — Posted on 2018-05-08

2054 BK channel inhibition by strong extracellular acidification

Zhou, Y.; Xia, X.; Lingle, C. J.

10.1101/317339 — biophysics — Posted on 2018-05-08

2055 Nuclear decoupling is part of a rapid protein-level cellular response to high-intensity mechanical loading

Gilbert, H. T.; Mallikarjun, V.; Dobre, O.; Jackson, M. R.; Pedley, R.; Gilmore, A. P.; Richardson, S. M.; Swift, J.

10.1101/317404 — biophysics — Posted on 2018-05-08

2056 HIPPO signaling provides a fail-safe for resolving embryonic cell fate conflicts during establishment of pluripotency in vivo

Frum, T.; Ralston, A.

10.1101/316539 — developmental biology — Posted on 2018-05-08

2057 On the Development of Sesamoid Bones

Eyal, S.; Rubin, S.; Krief, S.; Levin, L.; Zelzer, E.

10.1101/316901 — developmental biology — Posted on 2018-05-08

2058 Frequency and synchrony of actomyosin oscillation during PCP-dependent convergent extension

Shindo, A.; Inoue, Y.; Kinoshita, M.; Wallingford, J. B.

10.1101/316745 — developmental biology — Posted on 2018-05-08

2059 Functional impact of the H2A.Z histone variant during meiosis in Saccharomyces cerevisiae

Gonzalez-Arranz, S.; Cavero, S.; Morillo-Huesca, M.; Andujar, E.; Perez-Alegre, M.; Prado, F.; San-Segundo, P. A.

10.1101/316133 — genetics — Posted on 2018-05-08

2060 Physicochemical characteristics and high sensory acceptability in cappuccinos made with jackfruit seeds replacing cocoa powder

Papa Spada, F.; da Silva, P. P. M.; Mandro, G. F.; Margiotta, G. B.; Spoto, M. H. F.; Canniatti-Brazaca, S. G.

10.1101/317313 — plant biology — Posted on 2018-05-08

2061 Elucidating the roles of Alzheimer disease-associated proteases and the signal-peptide peptidase-like 3 (SPPL3) in the shedding of glycosyltransferases

el-battari, a.; Jeanneau, C.; Mathieu, S.; Sigaud, R.; PROROK-HAMON, M.; Ouafik, L.

10.1101/317214 — biochemistry — Posted on 2018-05-08

2062 A High-throughput Neurohistological Pipeline for Brain-Wide Mesoscale Connectivity Mapping of the Common Marmoset

Lin, M. K.; Takahashi, Y. S.; Huo, B.-X.; Hanada, M.; Nagashima, J.; Hata, J.; Tolpygo, A. S.; Ram, K.; Lee, B. C.; Miller, M. I.; Rosa, M. G. P.; Sasaki, E.; Iriki, A.; Okano, H.; Mitra, P. P.

10.1101/315804 — neuroscience — Posted on 2018-05-08

2063 Heterogeneity of Long-History Migration Predicts Smiling, Laughter and Positive Emotion Across the Globe and Within the United States

Niedenthal, P. M.; Rychlowska, M.; Rychlowska, M.; Wood, A.; Zhao, F.

10.1101/317289 — evolutionary biology — Posted on 2018-05-08

2064 Seasonal changes of metabolites in phloem sap from Broussonetia papyrifera

Shi, J.; Liu, H.; Luo, J.; Cai, L.

10.1101/317271 — plant biology — Posted on 2018-05-08

2065 Knowledge, attitudes and awareness of the human papillomavirus among health professionals in New Zealand

Sherman, S. M.; Bartholomew, K.; Denison, H. J.; Patel, H.; Moss, E. L.; Douwes, J.; Bromhead, C.

10.1101/317248 — pathology — Posted on 2018-05-08

2066 Variability of core microbiota in newly diagnosed treatment-naïve paediatric Inflammatory Bowel Disease patients

de Meij, T. G. J.; de Groot, E.; Peeters, C.; de Boer, N.; Kneepkens, F.; Eck, A.; Benninga, M.; Savelkoul, P.; van Bodegraven, A.; Budding, D.

10.1101/317263 — microbiology — Posted on 2018-05-08

2067 Activation of the mTOR/ Akt pathway in thymic epithelial cells derived from thymomas

Maury, J.-M.; Merveilleux du Vignaux, C.; Drevet, G.; Zarza, V.; chalabreysse, L.; Tronc, F.; Girard, N.; Leroux, C.

10.1101/317297 — cancer biology — Posted on 2018-05-08

2068 Identification, structure-activity relationship and in silico molecular docking analyses of five novel angiotensin I-converting enzyme (ACE)-inhibitory peptides from stone fish hydrolysates

Auwal, S. M.; Zainal Abidin, N.; Zarei, M.; Tan, C. P.; saari, N.

10.1101/317198 — biochemistry — Posted on 2018-05-08

2069 The recognition and expectations of ex-inpatients of mental health services: A web-based questionnaire survey in Japan.

Shiina, A.; Ojio, Y.; Sato, A.; Sugiyama, N.; Iyo, M.; Fujii, C.

10.1101/317057 — neuroscience — Posted on 2018-05-08

2070 Site-specific PEGylation crosslinking of L-asparaginase subunits to improve its therapeutic efficiency

Ramirez-Paz, J.; Saxena, M.; Delinois, L. J.; Joaquin-Ovalle, F. M.; Lin, S.; Chen, Z.; Rojas-Nieves, V. A.; Griebenow, K.

10.1101/317040 — bioengineering — Posted on 2018-05-08

2071 Escherichia coli Bcteriuria in pregnant women in Ghana: Antibiotic resistance pattern, Virulence Factors and Resistant genetic markers.

Forson, A. O.; Bright, W.; Nana-Adjei, D.; Quarchie, M. N.; Obeng-Nkuramah, N.; N/A,

10.1101/317065 — microbiology — Posted on 2018-05-08

2072 PID1 alters antilipolytic action of insulin and increases lipolysis via Inhibited the activation of AKT/PKA Pathway

yin, c. y.; jin, y.; liu, y. s.; wang, l.; xiao, y.

10.1101/317024 — cell biology — Posted on 2018-05-08

2073 Cellular Adaptive Response and Regulation of HIF after Low Dose Gamma-radiation Exposure

Gandhi, N. M.

10.1101/316943 — biophysics — Posted on 2018-05-08

2074 Estimating the timing of multiple admixture pulses during local ancestry inference.

Medina, P.; Thornlow, B.; Nielsen, R.; Corbett-Detig, R.

10.1101/314617 — evolutionary biology — Posted on 2018-05-08

2075 Engineering Nitrogen Fixation Activity in an Oxygenic Phototroph

Liu, D.; Liberton, M.; Yu, J.; Pakrasi, H.; Bhattacharyya-Pakrasi, M.

10.1101/316547 — synthetic biology — Posted on 2018-05-08

2076 Immediate stimulus repetition abolishes stimulus expectation and surprise effects in fast periodic visual oddball designs

Feuerriegel, D.; Keage, H. A. D.; Rossion, B.; Quek, G. L.

10.1101/316786 — neuroscience — Posted on 2018-05-08

2077 Orthogonal regulation of ferritin translation by human eIF3 and the iron response proteins

Pulos, M. C.; Srole, D. N.; McSwiggen, D. T.; Ingolia, N. T.; Cate, J.

10.1101/316299 — molecular biology — Posted on 2018-05-08

2078 Evaluation of current and emerging anti-malarial medicines for inhibition of Toxoplasma gondii growth in vitro

Radke, J. B.; Burrows, J. N.; Goldberg, D. E.; Sibley, L. D.

10.1101/316455 — microbiology — Posted on 2018-05-08

2079 Habitat heterogeneity reduces the richness of ant species by increasing abundance of the local dominant species

Travassos-Britto, B.; Rocha, P. L. B. d.

10.1101/316430 — ecology — Posted on 2018-05-08

2080 Molecular mechanism of depolarization-dependent inactivation in W366F mutant of Kv1.2

Kondo, H. X.; Yoshida, N.; Shirota, M.; Kinoshita, K.

10.1101/316174 — physiology — Posted on 2018-05-07

2081 Combinations of DIPs and Dprs control organization of olfactory receptor neuron terminals in Drosophila

Barish, S.; Nuss, S.; Strunilin, I.; Bao, S.; Mukherjee, S.; Jones, C. D.; Volkan, P. C.

10.1101/316109 — neuroscience — Posted on 2018-05-07

2082 Trans-ethnic polygenic analysis supports genetic overlaps of lumbar disc degeneration with height, body mass index, and bone mineral density

Zhou, X.; Cheung, C.-L.; Karasugi, T.; Karppinen, J.; Samartzis, D.; Hsu, Y.-H.; Mak, T. S. H.; Song, Y.-Q.; Chiba, K.; Kawaguchi, Y.; Li, Y.; Chan, D.; Cheung, K. M.-C.; Ikegawa, S.; Cheah, K. S.-E.; Sham, P. C.

10.1101/316737 — genetics — Posted on 2018-05-07

2083 A role for differential gene regulation in the rapid diversification of melanic plumage coloration in the dark-eyed junco (Junco hyemalis)

Abolins-Abols, M.; Kornobis, E.; Ribeca, P.; Wakamatsu, K.; Peterson, M. P.; Ketterson, E.; Mila, B.

10.1101/315762 — evolutionary biology — Posted on 2018-05-07

2084 Evaluation of Methods for Cell Nuclear Structure Analysis from Microscopy Data

Kalinin, A. A.; Athey, B. D.; Dinov, I. D.

10.1101/254219 — bioinformatics — Posted on 2018-05-07

2085 Anisotropic growth is achieved through the additive mechanical effect of material anisotropy and elastic asymmetry

Bou Daher, F.; Chen, Y.; Bozorg, B.; Clough, J. H.; Jönsson, H.; Braybrook, S. A.

10.1101/316364 — plant biology — Posted on 2018-05-07

2086 Sun navigation requires compass neurons in Drosophila

Giraldo, Y. M.; Leitch, K. J.; Ros, I. K.; Warren, T. L.; Weir, P. T.; Dickinson, M.

10.1101/315176 — neuroscience — Posted on 2018-05-07

2087 Continuity between koniocellular layers of dorsal lateral geniculate and inferior pulvinar nuclei in common marmosets

Huo, B.-X.; Zeater, N.; Lin, M. K.; Takahashi, Y. S.; Hanada, M.; Nagashima, J.; Lee, B. C.; Grunert, U.; Miller, M. I.; Rosa, M.; Okano, H.; Martin, P. R.; Mitra, P. P.

10.1101/315598 — neuroscience — Posted on 2018-05-07

2088 Walking Drosophila aim to maintain a neural heading estimate at an internal goal angle

Green, J.; Vijayan, V.; Mussells Pires, P.; Adachi, A.; Maimon, G.

10.1101/315796 — neuroscience — Posted on 2018-05-07

2089 RNA polymerase II clustering through CTD phase separation

Boehning, M.; Dugast-Darzacq, C.; Rankovic, M.; Hansen, A. S.; Yu, T.-K.; Marie-Nelly, H.; Kokic, G.; Dailey, G. M.; Cramer, P.; Darzacq, X.; Zweckstetter, M.

10.1101/316372 — molecular biology — Posted on 2018-05-07

2090 Co-expression patterns define epigenetic regulators associated with neurological dysfunction

Boukas, L.; Havrilla, J. M.; Quinlan, A. R.; Bjornsson, H. T.; Hansen, K. D.

10.1101/219097 — genomics — Posted on 2018-05-07

2091 Decoupling the impact of microRNAs on translational repression versus RNA degradation in embryonic stem cells

Blelloch, R.; Freimer, J. W.; Hu, T.

10.1101/316679 — genetics — Posted on 2018-05-07

2092 Voltage-sensitive dye delivery through the blood brain barrier using adenosine receptor agonist Regadenoson

Pak, R. W.; Kang, J.; Valentine, H.; Loew, L. M.; Thorek, D. L.; Boctor, E. M.; Wong, D. F.; Kang, J. U.

10.1101/316505 — bioengineering — Posted on 2018-05-07

2093 Multilabel multiclass classification of OCT images augmented with age, gender and visual acuity data

Mehta, P.; Lee, A. Y.; Lee, C.; Balazinska, M.; Rokem, A.

10.1101/316349 — physiology — Posted on 2018-05-07

2094 Methylation patterns reveal cryptic structure and a pathway for adaptation in a panmictic carnivore

Johnson, J. B.; Murray, D. L.; Shafer, A. B. A.

10.1101/316711 — genomics — Posted on 2018-05-07

2095 Shared genetic contribution to type 1 and type 2 diabetes risk

Aylward, A. J.; Chiou, J.; Okino, M.-L.; Kadakia, N.; Gaulton, K. J.

10.1101/285304 — genetics — Posted on 2018-05-07

2096 Bayesian Estimation of 3D Chromosomal Structure from Single Cell Hi-C Data

Rosenthal, M.; Bryner, D.; Huffer, F.; Evans, S.; Srivastava, A.; Neretti, N.

10.1101/316265 — bioinformatics — Posted on 2018-05-07

2097 Maternal stress increases cooperative behaviour of offspring in wild meerkats

Dantzer, B.; Dubuc, C.; Braga Goncalves, I.; Cram, D. L.; Bennett, N. C.; Ganswindt, A.; Duncan, C.; Gaynor, D.; Clutton-Brock, T. H.

10.1101/316182 — animal behavior and cognition — Posted on 2018-05-07

2098 Automated Tracking of Biopolymer Growth and Network Deformation with TSOAX

Xu, T.; Langouras, C.; Adeli Koudehi, M.; Vos, B. E.; Wang, N.; Koenderink, G. H.; Huang, X.; Vavylonis, D.

10.1101/316489 — cell biology — Posted on 2018-05-07

2099 Ionizing radiation induces stem cell-like properties in a caspase-dependent manner in Drosophila

Verghese, S.; Su, T. T.

10.1101/316497 — cancer biology — Posted on 2018-05-07

2100 Genetic incompatibility combined with female-lethality is effective and robust in simulations of Aedes aegypti population control

Maselko, M.; Heinsch, S. C.; Das, S.; Smanski, M. J.

10.1101/316406 — synthetic biology — Posted on 2018-05-07

2101 Embryo timelapses can be compiled and quantified to understand canonical histone dynamics across multiple cell cycles.

Smith, L.; Maddox, P. S.

10.1101/316281 — developmental biology — Posted on 2018-05-07

2102 A Composition-Dependent Molecular Clutch Between T Cell Signaling Clusters and Actin

Ditlev, J. A.; Vega, A. R.; Köster, D. V.; Su, X.; Lakoduk, A.; Vale, R. D.; Mayor, S.; Jaqaman, K.; Rosen, M. K.

10.1101/316414 — cell biology — Posted on 2018-05-07

2103 Quantifying heterogeneity of stochastic gene expression

Iida, K.; Obata, N.; Kimura, Y.

10.1101/316166 — biophysics — Posted on 2018-05-07

2104 Homeostatic feedback modulates the development of two-state patterned activity in a model serotonin motor circuit in Caenorhabditis elegans

Ravi, B.; Garcia, J.; Collins, K. M.

10.1101/202507 — neuroscience — Posted on 2018-05-07

2105 Heuristic optimisation of the management strategy of a plant epidemic using sequential sensitivity analyses

Rimbaud, L.; Dallot, S.; Bruchou, C.; Thoyer, S.; Jacquot, E.; Soubeyrand, S.; Thebaud, G.

10.1101/315747 — epidemiology — Posted on 2018-05-07

2106 Ordered arrangement of dendrites within a C. elegans sensory nerve bundle

Yip, Z. C.; Heiman, M. G.

10.1101/316307 — developmental biology — Posted on 2018-05-07

2107 N-linked glycosylation of the antagonist Short gastrulation increases the functional complexity of BMP signals

Negreiros, E.; Herszterg, S.; Kang, K.-H.; Camara, A.; Dias, W.; Carneiro, K.; Bier, E.; Todeschini, A.; Araujo, H.

10.1101/316448 — developmental biology — Posted on 2018-05-07

2108 A neuronal MAP kinase constrains growth of a C. elegans sensory dendrite throughout the life of the organism

McLachlan, I. G.; Beets, I.; de Bono, M.; Heiman, M. G.

10.1101/316315 — developmental biology — Posted on 2018-05-07

2109 A limited number of double-strand DNA breaks are sufficient to delay cell cycle progression.

van den Berg, J.; G. Manjon, A.; Kielbassa, K.; Feringa, F. M.; Freire, R.; Medema, R. H.

10.1101/316158 — cell biology — Posted on 2018-05-07

2110 Fission yeast cytokinesis requires a putative mechanosensitive channel Pkd2p

Chen, Q.; Morris, Z.; Morris, B.

10.1101/316380 — cell biology — Posted on 2018-05-07

2111 Exponential fluorescent amplification of individual RNAs using clampFISH probes

Rouhanifard, S. H.; Mellis, I. A.; Dunagin, M.; Bayatpour, S.; Symmons, O.; Cote, A.; Raj, A.

10.1101/222794 — bioengineering — Posted on 2018-05-07

2112 Coiled Coil-Mediated Assembly of an Icosahedral Protein Cage with Extremely High Thermal and Chemical Stability

Cristie-David, A. S.; Chen, J.; Nowak, D. B.; Park, S. I.; Banaszak Holl, M. M.; Su, M.; Marsh, N.

10.1101/316331 — synthetic biology — Posted on 2018-05-07

2113 Circuit models of low dimensional shared variability in cortical networks

Huang, C.; Ruff, D.; Pyle, R.; Rosenbaum, R.; Cohen, M.; Doiron, B.

10.1101/217976 — neuroscience — Posted on 2018-05-07

2114 Antibiotic-induced dysbiosis predicts mortality in an animal model of Clostridium difficile infection

Burdet, C.; Sayah-Jeanne, S.; Nguyen, T. T.; Hugon, P.; Sablier-Gallis, F.; Saint-Lu, N.; Corbel, T.; Ferreira, S.; Pulse, M.; Weiss, W. J.; Andremont, A.; Mentre, F.; de Gunzburg, J.

10.1101/315382 — microbiology — Posted on 2018-05-07

2115 HIV-1 Protease Evolvability is Affected by Synonymous Nucleotide Recoding

Nevot, M.; Jordan-Paiz, A.; Martrus, G.; Andres, C.; Garcia-Cehic, D.; Gregori, J.; Franco, S.; Quer, J.; Martinez, M. A.

10.1101/315366 — evolutionary biology — Posted on 2018-05-07

2116 A competitive binding model predicts nonlinear responses of olfactory receptors to complex mixtures

Singh, V.; Murphy, N. R.; Balasubramanian, V.; Mainland, J. D.

10.1101/311514 — neuroscience — Posted on 2018-05-07

2117 Environmental deformations dynamically shift the grid cell spatial metric

Keinath, A. T.; Epstein, R. A.; Balasubramanian, V.

10.1101/174367 — neuroscience — Posted on 2018-05-07

2118 HapCHAT: Adaptive haplotype assembly for efficiently leveraging high coverage in long reads

Beretta, S.; Patterson, M.; Zaccaria, S.; Della Vedova, G.; Bonizzoni, P.

10.1101/170225 — bioinformatics — Posted on 2018-05-07

2119 RsmV a small non-coding regulatory RNA in Pseudomonas aeruginosa that sequesters RsmA and RsmF from target mRNAs

Janssen, K. H.; Diaz, M.; Gode, C. J.; Wolfgang, M. C.; Yahr, T. L.

10.1101/315341 — microbiology — Posted on 2018-05-07

2120 Integrative analysis of single cell expression data reveals distinct regulatory states in bidirectional promoters

Behjati Ardakani, F.; Kattler, K.; Nordstroem, K.; Gasparoni, N.; Gasparoni, G.; Fuchs, S.; Sinha, A.; Barann, M.; Ebert, P.; Fischer, J.; Hutter, B.; Zipprich, G.; Felder, B.; Eils, J.; Brors, B.; Lengauer, T.; Manke, T.; Rosenstiel, P.; Walter, J.; Schulz, M. H.

10.1101/315937 — genomics — Posted on 2018-05-07

2121 Mature dentate granule cells show different intrinsic properties depending on the behavioural context of their activation

Peret, A.; Pleau, C.; Pearlstein, E.; Scalfati, T.; Marti, G.; Michel, F.; Crepel, V.

10.1101/309906 — neuroscience — Posted on 2018-05-07

2122 The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms

Brooks, B.; Olm, M. R.; Firek, B. A.; Baker, R.; Geller-McGrath, D.; Reimer, S. R.; Soenjoyo, K. R.; Yip, J. S.; Dahan, D.; Thomas, B. C.; Morowitz, M. J.; Banfield, J. F.

10.1101/315689 — microbiology — Posted on 2018-05-07

2123 Chimeric antigen receptors that trigger phagocytosis

Morrissey, M. A.; Williamson, A. P.; Steinbach, A. M.; Roberts, E. W.; Kern, N.; Headley, M. B.; Vale, R. D.

10.1101/316323 — cell biology — Posted on 2018-05-07

2124 Synthesis of oxyfunctionalized NSAID metabolites by microbial biocatalysts

Klenk, J. M.; Kontny, L.; Nebel, B. A.; Hauer, B.

10.1101/315374 — biochemistry — Posted on 2018-05-07

2125 Identifying core biological processes distinguishing human eye tissues with precise systems-level gene expression analyses and weighted correlation networks

Bryan, J. M.; Fufa, T.; Bharti, K.; Brooks, B.; Hufnagel, R. B.; McGaughey, D.

10.1101/136960 — genomics — Posted on 2018-05-07

2126 Multi-omics biomarker pipeline reveals elevated levels of protein-glutamine gamma-glutamyltransferase 4 in seminal plasma of prostate cancer patients

Drabovich, A. P.; Saraon, P.; Drabovich, M.; Karakosta, T. D.; Dimitromanolakis, A.; Hyndman, M. E.; Jarvi, K.; Diamandis, E. P.

10.1101/120873 — cancer biology — Posted on 2018-05-07

2127 CINNA: An R/CRAN package to decipher Central Informa-tive Nodes in Network Analysis

Ashtiani, M.; Mirzaie, M.; Jafari, M.

10.1101/168757 — systems biology — Posted on 2018-05-07

2128 A distributed brain network predicts general intelligence from resting-state human neuroimaging data

Dubois, J. C.; Galdi, P.; Paul, L. K.; Adolphs, R.

10.1101/257865 — neuroscience — Posted on 2018-05-07

2129 A new full-length virus genome sequencing method reveals that antiviral RNAi changes geminivirus populations in field-grown cassava

Mehta, D.; Hirsch-Hoffmann, M.; Were, M.; Patrignani, A.; Were, H.; Gruissem, W.; Vanderschuren, H.

10.1101/168724 — genomics — Posted on 2018-05-07

2130 Enhancing resolution of natural methylome reprogramming behavior in plants

Sanchez, R.; Yang, X.; Kundariya, H.; Barreras, J. R.; Mackenzie, S.

10.1101/252106 — genomics — Posted on 2018-05-07

2131 Modeling brain dynamics in brain tumor patients using The Virtual Brain

Aerts, H.; Schirner, M.; Jeurissen, B.; Van Roost, D.; Achten, E.; Ritter, P.; Marinazzo, D.

10.1101/265637 — neuroscience — Posted on 2018-05-07

2132 Neural signatures of the processing of temporal patterns in sounds

Herrmann, B.; Johnsrude, I. S.

10.1101/261271 — neuroscience — Posted on 2018-05-07

2133 Spatio-temporal relays control layer identity of direction-selective neuron subtypes in Drosophila

Apitz, H.; Salecker, I.

10.1101/262451 — neuroscience — Posted on 2018-05-07

2134 Partially Overlapping Brain Networks for Singing and Cello Playing

Segado, M.; Hollinger, A.; Thibodeau, J.; Penhune, V.; Zatorre, R.

10.1101/257923 — neuroscience — Posted on 2018-05-07

2135 Gene regulatory mechanisms underlying the evolutionary loss of a polygenic trait

Lammers, M.; Kraaijeveld, K.; Mariën, J.; Ellers, J.

10.1101/307389 — evolutionary biology — Posted on 2018-05-07

2136 Probing the origin of matching functional jaws: roles of Dlx5/6 in cranial neural crest cells.

Shimizu, M.; Narboux-Neme, N.; Gitton, Y.; de Lombares, C.; Fontaine, A.; Alfama, G.; Kitazawa, T.; Kawamura, Y.; Heude, E.; Marshall, L.; Higashiyama, H.; Wada, Y.; Kurihara, Y.; Kurihara, H.; Levi, G.

10.1101/296665 — developmental biology — Posted on 2018-05-07

2137 babette: BEAUti 2, BEAST2 and Tracer for R

Bilderbeek, R. J. C.; Etienne, R. S.

10.1101/271866 — bioinformatics — Posted on 2018-05-07

2138 Molecular dynamics suggests antiviral compounds active against Dengue Virus show similar binding patterns to Zika Virus proteins

de Lima Neto, D. F.; Soares, A. P.; Pour, S. Z.; Ortiz, A. S.; Freire, C. M.; Neuhaus, P.; Bonafe, C. F.

10.1101/309351 — microbiology — Posted on 2018-05-07

2139 Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types

Dentro, S. C.; Leshchiner, I.; Haase, K.; Tarabichi, M.; Wintersinger, J.; Deshwar, A. G.; Yu, K.; Rubanova, Y.; Mcintyre, G.; Vazquez-Garcia, I.; Kleinheinz, K.; Livitz, D. G.; Malikic, S.; Donmez, N.; Sengupta, S.; Demeulemeester, J.; Anur, P.; Jolly, C.; Cmero, M.; Rosebrock, D.; Schumacher, S.; Fan, Y.; Fittall, M.; Drews, R. M.; Yao, X.; Lee, J.; Schlesner, M.; Zhu, H.; Adams, D. J.; Getz, G.; Boutros, P. C.; Imielinski, M.; Beroukhim, R.; Sahinalp, S. C.; Ji, Y.; Peifer, M.; Martincorena, I.; Markowetz, F.; Mustonen, V.; Yuan, K.; Gerstung, M.; Spellman, P. T.; Wang, W.; Morris, Q. D.; W

10.1101/312041 — cancer biology — Posted on 2018-05-07

2140 Inward tubulation of the plasma membrane expedites membrane exchange and receptor presentation

Yao, L.-f.; Zhou, L.; Zhang, R.; Cai, L.

10.1101/315606 — cell biology — Posted on 2018-05-07

2141 Self-organization of Plk4 regulates symmetry breaking in centriole duplication.

Yamamoto, S.; Kitagawa, D.

10.1101/313635 — cell biology — Posted on 2018-05-07

2142 Error-correcting DNA barcodes for high-throughput sequencing

Hawkins, J. A.; Jones, S. K.; Finkelstein, I. J.; Press, W. H.

10.1101/315002 — molecular biology — Posted on 2018-05-07

2143 Polar targeting and assembly of the Legionella Dot/Icm type IV secretion system (T4SS) by T6SS-related components

Jeong, K. C.; Gyore, J.; Teng, L.; Ghosal, D.; Jensen, G. J.; Vogel, J. P.

10.1101/315721 — microbiology — Posted on 2018-05-07

2144 T Cell Activation Triggers Reversible Inosine-5'-Monophosphate Dehydrogenase Assembly

Duong-Ly, K. C.; Kuo, Y.-M.; Johnson, M. C.; Kollman, J. M.; Soboloff, J.; Rall, G. F.; Andrews, A.; Peterson, J.

10.1101/315929 — immunology — Posted on 2018-05-07

2145 Fine-scale resolution and analysis of runs of homozygosity in domestic dogs

Sams, A. J.; Boyko, A. R.

10.1101/315770 — genomics — Posted on 2018-05-07

2146 A First-principles Approach to Large-scale Nuclear Architecture

Agrawal, A.; Ganai, N.; Sengupta, S.; Menon, G. I.

10.1101/315812 — biophysics — Posted on 2018-05-07

2147 Prioritizing network communities

Zitnik, M.; Sosic, R.; Leskovec, J.

10.1101/315903 — bioinformatics — Posted on 2018-05-07

2148 Differences in the temporal processing between identification and categorization of durations: a behavioral and ERP study

Bannier, D.; Wearden, J.; Le Dantec, C.; Rebaï, M.

10.1101/315887 — neuroscience — Posted on 2018-05-07

La Rocca, D.; Zilber, N.; Abry, P.; van Wassenhove, V.; Ciuciu, P.

10.1101/315853 — neuroscience — Posted on 2018-05-07

2150 Structure for Energy Cycle: A unique status of Second Law of Thermodynamics for living systems

Bai, S.-N.; Ge, H.; Qian, H.

10.1101/314567 — evolutionary biology — Posted on 2018-05-07

2151 A computational model of task allocation in social insects: ecology and interactions alone can drive specialisation

Chen, R.; Meyer, B.; Garcia, J.

10.1101/315846 — ecology — Posted on 2018-05-07

2152 matchSCore: Matching Single-Cell Phenotypes Across Tools and Experiments

Mereu, E.; Iacono, G.; Guillaumet-Adkins, A.; Moutinho, C.; Lunazzi, G.; Santos, C.; Miguel-Escalada, I.; Ferrer, J.; Real, F. X.; Gut, I.; Heyn, H.

10.1101/314831 — bioinformatics — Posted on 2018-05-07

2153 Exendin-4 disrupts responding to reward predictive incentive cues in rats

Wakabayshi, K. T.; Baindur, A. N.; Feja, M.; Chen, K.; Bernosky-Smith, K.; Bass, C. E.

10.1101/315705 — pharmacology and toxicology — Posted on 2018-05-07

2154 Emergence and suppression of cooperation by action visibility in transparent games

Unakafov, A. M.; Schultze, T.; Kagan, I.; Moeller, S.; Eule, S.; Wolf, F.

10.1101/314500 — evolutionary biology — Posted on 2018-05-07

2155 A constrained SSU-rRNA phylogeny reveals the unsequenced diversity of photosynthetic Cyanobacteria (Oxyphotobacteria)

Cornet, L.; Wilmotte, A.; Javaux, E. J.; BAURAIN, D.

10.1101/315697 — evolutionary biology — Posted on 2018-05-07

2156 Operationalizing ecological connectivity in spatial conservation planning with Marxan Connect

Daigle, R. M.; Metaxas, A.; Balbar, A.; McGowan, J.; Treml, E. A.; Kuempel, C. D.; Possingham, H. P.; Beger, M.

10.1101/315424 — ecology — Posted on 2018-05-07

2157 Optic nerve intraneural stimulation allows selective visual cortex activation

Gaillet, V.; Cutrone, A.; Vagni, P.; Artoni, F.; Romero Pinto, S. A.; Lipucci Di Paola, D.; Micera, S.; Ghezzi, D.

10.1101/311035 — bioengineering — Posted on 2018-05-07

2158 Sequential replay of non-spatial task states in the human hippocampus

Schuck, N. W.; Niv, Y.

10.1101/315978 — neuroscience — Posted on 2018-05-07

2159 Single-neuron interactions between the somatosensory thalamo-cortical circuits during perception

Tauste Campo, A.; Vazquez, Y.; Alvarez, M.; Zainos, A.; Rossi-Pool, R.; Deco, G.; Romo, R.

10.1101/315911 — neuroscience — Posted on 2018-05-07

2160 TRAF6 directs Foxp3 localization and facilitates Treg function through K63-type ubiquitination

Lu, L.; Ni, X.; Tao, J.; Gu, J.; Park, B. V.; Chen, Z.; Newman, S.; Shen, H.; Wang, X.; Li, B.; Blazar, B. R.; Barbi, J.; Pan, F.

10.1101/316000 — immunology — Posted on 2018-05-07

2161 Selection of horizontal gene transfer through public good production

Dimitriu, T.; Misevic, D.; Benard Capelle, J.; Lindner, A.; Brown, S.; Taddei, F.

10.1101/315960 — evolutionary biology — Posted on 2018-05-07

2162 Predicting cell types in single cell mass cytometry data

Abdelaal, T.; van Unen, V.; Höllt, T.; Koning, F.; Reinders, M.; Mahfouz, A.

10.1101/316034 — bioinformatics — Posted on 2018-05-07

2163 Implementing new portable touchscreen-setups to enhance cognitive research and enrich zoo-housed animals

Schmitt, V.

10.1101/316042 — animal behavior and cognition — Posted on 2018-05-07

2164 MyROOT: A novel method and software for the semi-automatic measurement of plant root length

Betegon-Putze, I.; Gonzalez, A.; Sevillano, X.; Blasco-Escamez, D.; Cano-Delgado, A. I.

10.1101/309773 — plant biology — Posted on 2018-05-07

2165 High-throughput Analysis of Arabidopsis Stem Vibrations to Identify Mutants with Altered Mechanical Properties

Nakata, M. T.; Takahara, M.; Sakamoto, S.; Yoshida, K.; Mitsuda, N.

10.1101/315838 — plant biology — Posted on 2018-05-07

2166 Intercellular signaling network underlies biological time across multiple temporal scales

Millstein, J.; Summa, K. C.; Yang, X.; Zhu, J.; Mi, H.; Vitaterna, M. H.; Turek, F. W.; Zhang, B.

10.1101/315788 — systems biology — Posted on 2018-05-07

2167 Discovery of a human testis-specific protein complex TEX101-DPEP3 and selection of its disrupting antibodies

Schiza, C.; Korbakis, D.; Panteleli, E.; Jarvi, K.; Drabovich, A. P.; Diamandis, E. P.

10.1101/315713 — molecular biology — Posted on 2018-05-07

2168 Identification of TEX101 functional interactome through proteomic measurement of human spermatozoa homozygous for the missense variant rs35033974

Schiza, C.; Korbakis, D.; Jarvi, K.; Diamandis, E. P.; Drabovich, A. P.

10.1101/315739 — molecular biology — Posted on 2018-05-07

2169 Common genetic variants contribute to risk of rare severe neurodevelopmental disorders

Niemi, M. E.; Martin, H. C.; Rice, D. L.; Gallone, G.; Gordon, S.; Kelemen, M.; McAloney, K.; McRae, J.; Radford, E. J.; Yu, S.; Gecz, J.; Martin, N. G.; Wright, C. F.; Fitzpatrick, D. R.; Firth, H. V.; Hurles, M. E.; Barrett, J. C.

10.1101/309070 — genetics — Posted on 2018-05-06

2170 Pervasive transcription-dependent chromatin remodeling influences the replication initiation program

Soudet, J.; Kaur, J.; Stutz, F.

10.1101/272666 — molecular biology — Posted on 2018-05-06

2171 Optimal Point Process Filtering for Birth-Death Model Estimation

Parag, K. V.; Pybus, O.

10.1101/165712 — bioinformatics — Posted on 2018-05-06

2172 Detecting differential transcription factor activity from ATAC-seq data

Tripodi, I. J.; Allen, M. A.; Dowell, R. D.

10.1101/315622 — bioinformatics — Posted on 2018-05-06

2173 Neolithic and Medieval virus genomes reveal complex evolution of Hepatitis B

Krause-Kyora, B.; Susat, J.; Key, F. M.; Kuehnert, D.; Bosse, E.; Immel, A.; Rinne, C.; Kornell, S.-C.; Yepes, D.; Franzenburg, S.; Heyne, H. O.; Meier, T.; Loesch, S.; Meller, H.; Friederich, S.; Nicklisch, N.; Alt, K. W.; Schreiber, S.; Tholey, A.; Herbig, A.; Nebel, A.; Krause, J.

10.1101/315531 — evolutionary biology — Posted on 2018-05-06

2174 Massive single-cell RNA-seq analysis and imputation via deep learning

Deng, Y.; Bao, F.; Dai, Q.; Wu, L.; Altschuler, S.

10.1101/315556 — bioinformatics — Posted on 2018-05-06

2175 Drug target identification and virtual screening in pursuit of phytochemical intervention of Mycobacterium chelonae

Basharat, Z.; Zaib, S.; Yasmin, A.; Tong, Y.

10.1101/315408 — bioinformatics — Posted on 2018-05-06

2176 Improved localizers and anatomical images to enable phosphorus magnetic resonance spectroscopy of liver metastasis at 7T

Rivera, D.; van Kalleveen, I.; Arteaga de Castro, C.; van Laarhoven, H.; Klomp, D.; van der Kemp, W.; Stoker, J.; Nederveen, A.

10.1101/315572 — bioengineering — Posted on 2018-05-06

2177 Gap perception in bumblebees

Ravi, S.; Bertrand, O.; Siesenop, T.; Manz, L.-S.; Doussot, C.; Fisher, A.; Egelhaaf, M.

10.1101/315432 — animal behavior and cognition — Posted on 2018-05-06

2178 Early transcriptional responses after dengue vaccination mirror the response to natural infection and predict neutralizing antibody titers

Popper, S. J.; Strouts, F. R.; Lindow, J. C.; Cheng, H. K.; Montoya, M.; Balmaseda, A.; Durbin, A. P.; Whitehead, S. S.; Harris, E.; Kirkpatrick, B. D.; Relman, D. A.

10.1101/314377 — immunology — Posted on 2018-05-06

2179 Non-mydriatic chorioretinal imaging in a transmission geometry and application to retinal oximetry

Weber, T. D.; Mertz, J.

10.1101/314765 — biophysics — Posted on 2018-05-06

2180 A Cell Penetrating Peptide from SOCS-1 Prevents Ocular Damage in Experimental Autoimmune Uveitis

Ahmed, C. M.; Massengill, M. T.; Ildefonso, C. J.; Johnson, H. M.; Lewin, A. S.

10.1101/315549 — immunology — Posted on 2018-05-06

2181 Inward tubulation of the plasma membrane expedites membrane exchange and receptor presentation

Yao, L.-f.; Zhou, L.; Zhang, R.; Cai, L.

10.1101/315606 — cell biology — Posted on 2018-05-06

2182 MEF2C is a new regulator of the human articular chondrocyte phenotype

Lazzarano, S.; Murphy, C. L.

10.1101/315630 — cell biology — Posted on 2018-05-06

2183 FMRIPrep: a robust preprocessing pipeline for functional MRI

Esteban, O.; Markiewicz, C.; Blair, R. W.; Moodie, C.; Isik, A. I.; Erramuzpe Aliaga, A.; Kent, J.; Goncalves, M.; DuPre, E.; Snyder, M.; Oya, H.; Ghosh, S.; Wright, J.; Durnez, J.; Poldrack, R.; Gorgolewski, K. J.

10.1101/306951 — bioinformatics — Posted on 2018-05-06

2184 Principal component analysis-based unsupervised feature extraction applied to single-cell gene expression analysis

Taguchi, Y.-h.

10.1101/312892 — bioinformatics — Posted on 2018-05-06

2185 Directed evolution of Escherichia coli with lower-than natural plasmid mutation rates

Deatherage, D. E.; Leon, D.; Rodriguez, A. E.; Omar, S. K.; Barrick, J. E.

10.1101/301382 — evolutionary biology — Posted on 2018-05-06

2186 Prot-SpaM: Fast alignment-free phylogeny reconstruction based on whole-proteome sequences

Leimeister, C.-A.; Schellhorn, J.; Schöbel, S.; Gerth, M.; Bleidorn, C.; Morgenstern, B.

10.1101/306142 — bioinformatics — Posted on 2018-05-06

2187 A Kaposi’s Sarcoma-Associated Herpesvirus Infection Mechanism is Independent of Integrins α3β1, αVβ3, and αVβ5

TerBush, A. A.; Hafkamp, F.; Lee, H. J.; Coscoy, L.

10.1101/270108 — microbiology — Posted on 2018-05-06

2188 Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types

Dentro, S. C.; Leshchiner, I.; Haase, K.; Tarabichi, M.; Wintersinger, J.; Deshwar, A. G.; Yu, K.; Rubanova, Y.; Mcintyre, G.; Vazquez-Garcia, I.; Kleinheinz, K.; Livitz, D. G.; Malikic, S.; Donmez, N.; Sengupta, S.; Demeulemeester, J.; Anur, P.; Jolly, C.; Cmero, M.; Rosebrock, D.; Schumacher, S.; Fan, Y.; Fittall, M.; Drews, R. M.; Yao, X.; Lee, J.; Schlesner, M.; Adams, D. J.; Getz, G.; Boutros, P. C.; Imielinski, M.; Beroukhim, R.; Sahinalp, S. C.; Ji, Y.; Peifer, M.; Martincorena, I.; Markowetz, F.; Mustonen, V.; Yuan, K.; Gerstung, M.; Spellman, P. T.; Wang, W.; Morris, Q. D.; Wedge, D.

10.1101/312041 — cancer biology — Posted on 2018-05-05

2189 Mobile-CRISPRi: Enabling Genetic Analysis of Diverse Bacteria

Peters, J. M.; Koo, B.-M.; Patino, R.; Heussler, G. E.; Hearne, C. C.; Inclan, Y.; Hawkins, J. S.; Lu, C. H. S.; Harden, M. M.; Osadnik, H.; Peters, J. E.; Engel, J. N.; Dutton, R. J.; Grossman, A. D.; Gross, C. A.; Rosenberg, O. S.

10.1101/315499 — microbiology — Posted on 2018-05-05

2190 Combining landscape genomics and ecological modelling to investigate local adaptation of indigenous Ugandan cattle to East Coast fever

Vajana, E.; Barbato, M.; Colli, L.; Milanesi, M.; Rochat, E.; Fabrizi, E.; Mukasa, C.; Del Corvo, M.; Masembe, C.; Muwanika, V.; Kabi, F.; Sonstegard, T. S.; Huson, H. J.; Negrini, R.; Joost, S.; Ajmone-Marsan, P.; NextGen Consortium,

10.1101/315184 — evolutionary biology — Posted on 2018-05-05

2191 Spatial variation in exploited metapopulations obscures risk of collapse

Okamoto, D. K.; Hessing-Lewis, M.; Samhouri, J. F.; Shelton, A. O.; Stier, A.; Levin, P.; Salomon, A. K.

10.1101/315481 — ecology — Posted on 2018-05-05

2192 Selectively increased autofluorescence at certain regions of skin may become a novel diagnostic biomarker for lung cancer

Zhang, M.; Tao, Y.; Chang, Q.; Li, Y.; Chu, T.; Ying, W.

10.1101/315440 — cancer biology — Posted on 2018-05-05

2193 Calibration, Selection and Identifiability Analysis of a Mathematical Model of the in vitro Erythropoiesis in Normal and Perturbed Contexts

Duchesne, R.; Guillemin, A.; Gandrillon, O.; Crauste, F.

10.1101/314955 — systems biology — Posted on 2018-05-05

2194 Transcranial photoacoustic imaging of NMDA-evoked focal circuit dynamics in rat forebrain

Kang, J.; Kadam, S. D.; Elmore, J. S.; Sullivan, B. J.; Valentine, H.; Malla, A. P.; Harraz, M. M.; Rahmim, A.; Kang, J. U.; Loew, L. M.; Baumann, M.; Grace, A. A.; Gjedde, A.; Boctor, E. M.; Wong, D. F.

10.1101/308585 — neuroscience — Posted on 2018-05-05

2195 Engrailed homeoprotein blocks degeneration in adult dopaminergic neurons through LINE-1 repression

Blaudin de The, F.-X.; Rekaik, H.; Peze-Heidsieck, E.; Massiani-Beaudoin, O.; Joshi, R. L.; Fuchs, J.; Prochiantz, A.

10.1101/164608 — neuroscience — Posted on 2018-05-05

2196 Reversible two-state folding of the ultrafast protein gpW under mechanical force

Schoenfelder, J.; De Sancho, D.; Berkovich, R.; Best, R. B.; Munoz, V.; Perez-Jimenez, R.

10.1101/314583 — biophysics — Posted on 2018-05-05

2197 Retrosplenial cortical representations of space and future goal locations develop with learning

Miller, A. M. P.; Mau, W.; Smith, D. M.

10.1101/315200 — neuroscience — Posted on 2018-05-05

2198 PBMC Fixation and Processing for Chromium Single-Cell RNA Sequencing

Chen, J.; Cheung, F.; Shi, R.; Zhou, H.; Lu, W.; Stagliano, K.

10.1101/315267 — genomics — Posted on 2018-05-05

2199 Genome Sequence of Indian Peacock Reveals the Peculiar Case of a Glittering Bird

Jaiswal, S. K.; Gupta, A.; Saxena, R.; Prasoodanan, V. P. K.; Sharma, A. K.; Mittal, P.; Roy, A.; Shafer, A. B. A.; Vijay, N.; Sharma, V. K.

10.1101/315457 — genomics — Posted on 2018-05-05

2200 Detection of Multidimensional Co-Exclusion Patterns in Microbial Communities

Albayrak, L.; Khanipov, K.; Golovko, G.; Fofanov, Y.

10.1101/315473 — genomics — Posted on 2018-05-05

2201 HiCAGE: an R package for large-scale annotation and visualization of 3C-based genomic data

Workman, M. J.; Silva, T. C.; Coetzee, S. G.; Hazelett, D. J.

10.1101/315234 — bioinformatics — Posted on 2018-05-05

2202 Mycobacteria recycle their peptidoglycan via a novel pathway which influences antimicrobial resistance and limits proliferation in macrophages.

Moynihan, P. J.; Maceiras, A. R. R.; Cadby, I. T.; Veerapen, N.; Jankute, M.; Crosatti, M.; Mukamolova, G.; Saraiva, M.; Lovering, A. L.; Besra, G. S.

10.1101/312876 — microbiology — Posted on 2018-05-05

2203 Cerebral organoid proteomics reveals signatures of dysregulated cortical development associated with human trisomy 21

McClure-Begley, T. D.; Ebmeier, C. C.; Ball, K. E.; Jacobsen, J. R.; Kogut, I.; Bilousova, G.; Klymkowsky, M. K.; Old, W. M.

10.1101/315317 — systems biology — Posted on 2018-05-05

2204 Highly Multiplexed Single-Cell RNA-seq for Defining Cell Population and Transcriptional Spaces

Gehring, J.; Park, J. H.; Chen, S.; Thomson, M.; Pachter, L.

10.1101/315333 — genomics — Posted on 2018-05-05

2205 Evidence for stabilizing selection at pleiotropic loci for human complex traits

Wong, E.; Chenoweth, S.; Blows, M.; Powell, J.

10.1101/126888 — evolutionary biology — Posted on 2018-05-05

2206 Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule

Li, W.; McClure, K.; Montabana, E.; Liras, S.; Dullea, R.; Cate, J.

10.1101/315325 — biophysics — Posted on 2018-05-05

2207 CRISPR-Cas9 interference in cassava linked to the evolution of editing-resistant geminiviruses

Mehta, D.; Stürchler, A.; Hirsch-Hoffmann, M.; Gruissem, W.; Vanderschuren, H.

10.1101/314542 — plant biology — Posted on 2018-05-05

2208 Estrus-Cycle Regulation of Cortical Inhibition

Clemens, A. M.; Lenschow, C.; Beed, P.; Li, L.; Sammons, R.; Naumann, R. K.; Wang, H.; Schmitz, D.; Brecht, M.

10.1101/314641 — neuroscience — Posted on 2018-05-05

2209 LRH-1 Mitigates Intestinal Inflammatory Disease by Maintaining Epithelial Homeostasis and Cell Survival

Bayrer, J. R.; Wang, H.; Nattiv, R.; Suzawa, M.; Escusa, H. S.; Fletterick, R. J.; Klein, O. D.; Moore, D. D.; Ingraham, H. A.

10.1101/314302 — cell biology — Posted on 2018-05-05

2210 Improving cross-cultural \"mind-reading\" with electrical brain stimulation

Martin, A. K.; Su, P.; Meinzer, M.

10.1101/313478 — neuroscience — Posted on 2018-05-05

2211 A high-throughput method for unbiased quantitation and categorisation of nuclear morphology

Skinner, B. M.; Rathje, C. C.; Bacon, J.; Johnson, E. E. P.; Larson, E. L.; Kopania, E. E. K.; Good, J. M.; Yousafzai, G.; Affara, N. A.; Ellis, P. J. I.

10.1101/312470 — genomics — Posted on 2018-05-05

2212 Adaptive Partitioning of the tRNA Interaction Interface by Aminoacyl-tRNA-Synthetases

Collins-Hed, A.; Ardell, D. H.

10.1101/312462 — evolutionary biology — Posted on 2018-05-05

2213 Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains

Otieno, J. R.; Kamau, E. M.; Oketch, J. W.; Ngoi, J. M.; Gichuki, A. M.; Binter, S.; Otieno, G. P.; Ngama, M.; Agoti, C. N.; Cane, P. A.; Kellam, P.; Cotten, M.; Lemey, P.; Nokes, D. J.

10.1101/309187 — epidemiology — Posted on 2018-05-05

2214 Transcranial photoacoustic imaging of NMDA-evoked focal circuit dynamics in rat forebrain

Kang, J.; Kadam, S. D.; Elmore, J. S.; Sullivan, B. J.; Valentine, H.; Malla, A. P.; Harraz, M. M.; Rahmim, A.; Kang, J. U.; Loew, L. M.; Baumann, M.; Grace, A. A.; Boctor, E. M.; Wong, D. F.

10.1101/308585 — neuroscience — Posted on 2018-05-05

2215 Endogenous parvoviral elements in the pit viper (Protobothrops mucrosuamatus) and in three members of three mammalian orders: implications for ecology and evolution of genera Amdoparvovirus and Protoparvovirus.

Penzes, J.; Marsile-Medun, S.; Agbandje-Mckenna, M.; Gifford, R. J.

10.1101/224584 — evolutionary biology — Posted on 2018-05-05

2216 Identification of the first endogenous Ophiovirus sequence.

Marsile-Medun, S.; Debat, H. J.; Gifford, R. J.

10.1101/235044 — evolutionary biology — Posted on 2018-05-05

2217 Visualizing single-cell RNA-seq datasets with Similarity Weighted Nonnegative Embedding (SWNE)

Wu, Y.; Tamayo, P.; Zhang, K.

10.1101/276261 — bioinformatics — Posted on 2018-05-05

2218 Cerebral organoid proteomics reveals signatures of dysregulated cortical development associated with human trisomy 21

McClure-Begley, T. D.; Ebmeier, C. C.; Ball, K. E.; Jacobsen, J. R.; Kogut, I.; Bilousova, G.; Klymkowsky, M. K.; Old, W. M.

10.1101/315317 — systems biology — Posted on 2018-05-05

2219 Estrogen Signaling in Arcuate Kiss1 Neurons Suppresses a Sex-Dependent Circuit That Promotes Dense Strong Bones in Female Mice

Herber, C. B.; Krause, W. C.; Wang, L.; Bayrer, J. R.; Li, A.; Schmitz, M.; Fields, A.; Ford, B.; Reid, M. S.; Nomura, D. K.; Nissenson, R. A.; Correa, S.; Ingraham, H. A.

10.1101/315283 — physiology — Posted on 2018-05-05

2220 Genetic analyses in UK Biobank identifies 78 novel loci associated with urinary biomarkers providing new insights into the biology of kidney function and chronic disease

Zanetti, D.; Rao, A.; Gustafsson, S.; Assimes, T.; Montgomery, S. B.; Ingelsson, E.

10.1101/315259 — genetics — Posted on 2018-05-05

2221 Phosphatidylinositol 4,5-bisphosphate regulates cilium transition zone maturation in Drosophila melanogaster

Gupta, A.; Fabian, L.; Brill, J.

10.1101/315275 — cell biology — Posted on 2018-05-05

2222 Estrus-Cycle Regulation of Cortical Inhibition

Clemens, A. M.; Lenschow, C.; Beed, P.; Li, L.; Sammons, R.; Naumann, R. K.; Wang, H.; Schmitz, D.; Brecht, M.

10.1101/314641 — neuroscience — Posted on 2018-05-04

2223 Normal observers show no evidence for blindsight in facial emotion perception

Rajananda, S.; Zhu, J.; Peters, M. A. K.

10.1101/314906 — neuroscience — Posted on 2018-05-04

2224 Rate fluctuations not steps dominate LIP activity during decision-making

Zhao, X.; Kording, K.

10.1101/249672 — neuroscience — Posted on 2018-05-04

2225 Synthesis and degradation of FtsZ determines the first cell division in starved bacteria

Sekar, K.; Rusconi, R.; Fuhrer, T.; Noor, E.; Nguyen, J.; Fernandez, V. I.; Buffing, M. F.; Berney, M.; Stocker, R.; Sauer, U.

10.1101/314922 — microbiology — Posted on 2018-05-04

2226 The ubiquitin ligase CRL3Kelch targets HtsRC to organize the Drosophila ring canal cytoskeleton

Hudson, A. M.; Mannix, K. M.; Gerdes, J. A.; Kottemann, M. C.; Cooley, L.

10.1101/315077 — developmental biology — Posted on 2018-05-04

2227 Lipid composition but not curvature is a determinant of a low molecular mobility within HIV-1 lipid envelope

Urbancic, I.; Brun, J.; Shrestha, D.; Waithe, D.; Eggeling, C.; Chojnacki, J.

10.1101/315168 — biophysics — Posted on 2018-05-04

2228 Rapid olfactory discrimination learning in adult zebrafish

Namekawa, I.; Moenig, N. R.; Friedrich, R. W.

10.1101/314849 — neuroscience — Posted on 2018-05-04

2229 Retrospective harmonization of multi-site diffusion MRI data acquired with different acquisition parameters

Cetin Karayumak, S.; Bouix, S.; Ning, L.; Shenton, M.; Kubicki, M.; Rathi, Y.

10.1101/314179 — neuroscience — Posted on 2018-05-04

2230 Studies on the mechanism of general anesthesia

Pavel, M. A.; Petersen, E. N.; Lerner, R. A.; Hansen, S. B.

10.1101/313973 — neuroscience — Posted on 2018-05-04

2231 Novel antimicrobial peptide discovery using machine learning and biophysical selection of minimal bacteriocin domains

Fields, F. R.; Freed, S. D.; Carothers, K. E.; Hamid, M. N.; Hammers, D. E.; Ross, J. N.; Kalwajtys, V. R.; Gonzalez, A. J.; Hildreth, A. D.; Friedberg, I.; Lee, S. W.

10.1101/314740 — microbiology — Posted on 2018-05-04

2232 Use of selenocysteine, the 21st amino acid, in the fungal kingdom

Mariotti, M.; Salinas, G.; Gabaldon, T.; Gladyshev, V. N.

10.1101/314781 — genomics — Posted on 2018-05-04

2233 Yield performance of chromosomally engineered durum wheat-Thinopyrum ponticum recombinant lines in a range of contrasting rain-fed environments across three countries

Kuzmanovic, L.; Ruggeri, R.; Able, J. A.; Bassi, F. M.; Maccaferri, M.; Tuberosa, R.; De Vita, P.; Rossini, F.; Ceoloni, C.

10.1101/313825 — genetics — Posted on 2018-05-04

2234 Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci

Azarian, T.; Mitchell, P.; Georgieva, M.; Thompson, C. M.; Ghoulia, A.; Pollard, A. J.; von Gottberg, A.; du Plessis, M.; Antonio, M.; Kwambana-Adams, B. A.; Clarke, S. C.; Everett, D.; Cornick, J.; Sadowy, E.; Hryniewicz, W.; Skoczynska, A.; Moisi, J.; McGee, L.; Beall, B.; Metcalf, B. J.; Breiman, R. F.; Ho, P.; Reid, R.; O'Brien, K. L.; Gladstone, R.; Bentley, S. D.; Hanage, W. P.

10.1101/314880 — evolutionary biology — Posted on 2018-05-04

2235 dirHub: a trackHub configurator with directory structure projection

Kawaji, H.

10.1101/314807 — bioinformatics — Posted on 2018-05-04

2236 Identification of novel and structurally diverse N-Methyl-D-Aspartate Receptor Antagonists: Successful Application of Pharmacophore Modeling, Virtual Screening and Molecular Docking

Sharma, M.; Mittal, A.; Singh, A.; Jainarayanan, A. K.; Paliwal, S. K.

10.1101/314914 — bioinformatics — Posted on 2018-05-04

2237 Identifying Streptococcus pneumoniae genes associated with invasive disease using pangenome-based whole genome sequence typing

Obolski, U.; Gori, A.; Lourenco, J.; Thompson, C.; Thompson, R.; French, N.; Heyderman, R.; Gupta, S.

10.1101/314666 — bioinformatics — Posted on 2018-05-04

2238 First person experience of threat modulates cortical network encoding human peripersonal space

de Borst, A. W.; Sanchez-Vives, M. V.; Slater, M.; de Gelder, B.

10.1101/314971 — neuroscience — Posted on 2018-05-04

2239 Systems Analysis of the 22q11.2 Microdeletion Syndrome Converges on a Mitochondrial Interactome Necessary for Synapse Function and Behavior

Gokhale, A.; Freeman, A. A.; Hartwig, C.; Bassell, J. L.; Zlatic, S. A.; Sapp, C.; Vadlamudi, T.; Abudulai, F.; Crocker, A.; Werner, E.; Wen, Z.; Repetto, G. M.; Gogos, J. A.; Claypool, S. M.; Forsyth, J. K.; Bearden, C.; Gausier, J.; Lewis, D. A.; Seyfried, N. T.; Faundez, V.

10.1101/315143 — neuroscience — Posted on 2018-05-04

2240 Improving cross-cultural \"mind-reading\" with electrical brain stimulation

Martin, A.; Su, P.; Meinzer, M.

10.1101/313478 — neuroscience — Posted on 2018-05-04

2241 Genomic prediction using individual-level data and summary statistics from multiple populations

Vandenplas, J.; Calus, M. P. L.; Gorjanc, G.

10.1101/314609 — genomics — Posted on 2018-05-04

2242 Increased DNA methylation variability in rheumatoid arthritis discordant monozygotic twins

Webster, A. P.; Plant, D.; Ecker, S.; Zufferey, F.; Bell, J. T.; Feber, A.; Paul, D. S.; Beck, S.; Barton, A.; Williams, F. M. K.; Worthington, J.

10.1101/314963 — genomics — Posted on 2018-05-04

2243 Movement behaviour responses to environment: fast inference of individual variation with a mixed effects model

Jonsen, I.; McMahon, C.; Patterson, T.; Auger-Methe, M.; Harcourt, R.; Hindell, M.; Bestley, S.

10.1101/314690 — ecology — Posted on 2018-05-04

2244 Fluctuations in populations of subsurface methane oxidizers in coordination with changes in electron acceptor availability

Magnabosco, C.; Timmers, P. H. A.; Lau, M. C. Y.; Borgonie, G.; Linage-Alvarez, B.; Kuloyo, O.; Alleva, R.; Kieft, T. L.; Slater, G. S.; van Heerden, E.; Sherwood Lollar, B.; Onstott, T. C.

10.1101/040204 — ecology — Posted on 2018-05-04

2245 Plate-based assay of AP-3 traffic in budding yeast

Plemel, R. L.; Odorizzi, G.; Merz, A. J.

10.1101/314286 — cell biology — Posted on 2018-05-04

2246 SATurn: A modular bioinformatics framework for the design of robust maintainable web-based and standalone applications

Damerell, D.; Strain-Damerell, C.; Garsot, S.; Joyce, S.; Barrett, P.; Marsden, B.

10.1101/313619 — bioinformatics — Posted on 2018-05-04

2247 ShinyGO: a graphical enrichment tool for animals and plants

Ge, S.; Jung, D.

10.1101/315150 — bioinformatics — Posted on 2018-05-04

2248 Stability-normalised walking speed: a new approach for human gait perturbation research

McCrum, C.; Willems, P.; Karamanidis, K.; Meijer, K.

10.1101/314757 — bioengineering — Posted on 2018-05-04

2249 Safety of transcranial focused ultrasound for human neuromodulation

Legon, W.; Bansal, P.; Ai, L.; Mueller, J. K.; Meekins, G.; Gillick, B.

10.1101/314856 — neuroscience — Posted on 2018-05-04

2250 Horizontal transfer of a pathway for coumarate catabolism unexpectedly inhibits purine nucleotide biosynthesis

Close, D.; Cooper, S.; Wang, X.; Giannone, R. J.; Engle, N. L.; Tschaplinski, T. J.; Hedstrom, L.; Parks, J. M.; Michener, J. K.

10.1101/315036 — microbiology — Posted on 2018-05-04

2251 The metabolic redox regime of Pseudomonas putida tunes its evolvability towards novel xenobiotic substrates

Akkaya, O.; Perez-Pantoja, D.; Calles, B.; Nikel, P. I.; de Lorenzo, V.

10.1101/314989 — microbiology — Posted on 2018-05-04

2252 The suppressive cap-binding-complex factor 4EIP is required for normal differentiation

Clayton, C.; Terrao, M.; Kamanyi Marucha, K.; Mugo, E.; Droll, D.; Minia, I.; Egler, F.; Braun, J.

10.1101/314997 — molecular biology — Posted on 2018-05-04

2253 Evolution of transmission mode in conditional mutualisms with spatial variation in symbiont quality

Brown, A. L.; Akcay, E.

10.1101/315119 — evolutionary biology — Posted on 2018-05-04

2254 Akaike information criteria and predictive geographical accuracy are not related in ecological niche modeling

Velasco, J. A.; Gonzales-Salazar, C.

10.1101/315101 — ecology — Posted on 2018-05-04

2255 Uncovering indirect interactions in bipartite ecological networks

Simmons, B. I.; Cirtwill, A.; Baker, N.; Dicks, L. V.; Stouffer, D. B.; Sutherland, W. J.

10.1101/315010 — ecology — Posted on 2018-05-04

2256 RUNX1 suppresses breast cancer stemness and tumor growth

Hong, D.; Fritz, A. F.; Finstad, K. H.; Fitzgerald, M. P.; Viens, A. L.; Ramsey, J.; Stein, J. L.; Lian, J. B.; Stein, G. S.

10.1101/315093 — cancer biology — Posted on 2018-05-04

2257 Scarless repair of acute and chronic kidney injury in African Spiny mice (Acomys cahirinus)

Okamura, D. M.; Brewer, C. M.; Wakenight, P.; Bahrami, N.; Bernardi, K.; Tran, A.; Olson, J.; Shi, X.; Piliponsky, A. M.; Nelson, B. R.; Beier, D. R.; Millen, K. J.; Majesky, M. W.

10.1101/315069 — pathology — Posted on 2018-05-04

2258 Multisite phosphorylation regulates phenotypic variability in antibiotic tolerance

Libby, E.; Reuveni, S.; Dworkin, J.

10.1101/315085 — microbiology — Posted on 2018-05-04

2259 A cosine similarity-based method to infer variability of chromatin accessibility at the single-cell level

Cai, S.; Georgakilas, G. K.; Johnson, J. L.; Vahedi, G.

10.1101/315028 — genomics — Posted on 2018-05-04

2260 Exact analytical solution of the extensible freely jointed chain model

Fiasconaro, A.; Falo, F.

10.1101/315051 — biophysics — Posted on 2018-05-04

2261 Polymeric perfluoropentane nanoemulsions are a versatile platform for ultrasonic drug uncaging

Zhong, Q.; Yoon, B. C.; Aryal, M. R.; Wang, J. B.; Airan, R. D.

10.1101/315044 — bioengineering — Posted on 2018-05-04

2262 Tuning Spatial Profiles of Selection Pressure to Modulate the Evolution of Resistance

De Jong, M. G.; Wood, K. B.

10.1101/230854 — evolutionary biology — Posted on 2018-05-04

2263 A direct comparison of four high risk human papilloma virus tests versus the cobas test for detecting cervical intraepithelial neoplasia and cervical cancer

Xue, P.; Gao, L. L.; Yin, J.; Han, L. L.; Zhao, J.; Li, L.; Seery, S.; Han, X. Y.; Li, T.-y.; Jiang, Y.; Shen, J.; Chen, W.

10.1101/314435 — epidemiology — Posted on 2018-05-04

2264 Promoter activity buffering reduces the fitness cost of misregulation

Schikora-Tamarit, M. A.; Lopez-Grado i Salinas, G.; Gonzalez Navasa, C.; Calderon, I.; Marcos-Fa, X.; Sas, M.; Carey, L.

10.1101/215186 — systems biology — Posted on 2018-05-04

2265 Myosin-II activity generates a dynamic steady state with continuous actin turnover in a minimal actin cortex

Sonal, ; Ganzinger, K. A.; Vogel, S. K.; Muecksch, J.; Blumhardt, P.; Schwille, P.

10.1101/312512 — biophysics — Posted on 2018-05-04

2266 The Wild-type and Gain-of-function Mutant p53 Enhance p300 Autoacetylation through Conformational Switching

Kaypee, S.; Ghosh, R.; Sahadevan, S. A.; Patil, S.; Shasmal, M.; Ghosh, P.; Roy, N.; Sengupta, J.; Roy, S.; Kundu, T. K.

10.1101/194704 — molecular biology — Posted on 2018-05-04

2267 Inhibitory Effect of Bacillus velezensis on Biofilm Formation by Streptococcus mutans

Yoo, Y.; Seo, D.-H.; Lee, H.; Nam, Y.-D.; Seo, M.-J.

10.1101/313965 — microbiology — Posted on 2018-05-04

2268 Detecting genome-wide directional effects of transcription factor binding on polygenic disease risk

Reshef, Y. A.; Finucane, H. K.; Kelley, D. R.; Gusev, A.; Kotliar, D.; Ulirsch, J. C.; Hormozdiari, F.; Nasser, J.; O'Connor, L.; van de Geijn, B.; Loh, P.-R.; Grossman, S.; Bhatia, G.; Gazal, S.; Palamara, P. F.; Pinello, L.; Patterson, N.; Adams, R.; Price, A.

10.1101/204685 — genetics — Posted on 2018-05-04

2269 The Association of Externalizing and Internalizing Problems with Indicators of Intelligence in a Sample of At-Risk Children

Helton, J.; Vaughn, M.; Kavish, N.; Boutwell, B. B.

10.1101/210500 — neuroscience — Posted on 2018-05-04

2270 A Double Error Dynamic Asymptote Model of Associative Learning

Kokkola, N. H. B.; Mondragon, E.; Alonso, E.

10.1101/210674 — animal behavior and cognition — Posted on 2018-05-04

2271 Age differences in head motion and estimates of cortical morphology

Madan, C. R.

10.1101/275925 — neuroscience — Posted on 2018-05-04

2272 Long-day increase of HvVRN2 expression marks the deadline to fulfill the vernalization requirement in winter barley

Monteagudo, A.; Igartua, E.; Karsai, I.; Gracia, M. P.; Casas, A. M.

10.1101/314799 — plant biology — Posted on 2018-05-04

2273 Geographic variation in adult and embryonic desiccation tolerance in a terrestrial-breeding frog

Rudin-Bitterli, T. S.; Evans, J. P.; Mitchell, N. J.

10.1101/314351 — evolutionary biology — Posted on 2018-05-04

2274 Solving for X: evidence for sex-specific autism biomarkers across multiple transcriptomic studies

Lee, S. C.; Quinn, T. P.; Lai, J.; Kong, S. W.; Hertz-Picciotto, I.; Glatt, S. J.; Crowley, T. M.; Venkatesh, S.; Nguyen, T.

10.1101/309518 — neuroscience — Posted on 2018-05-04

2275 Rationally designed mimotope library for profiling of the human IgM repertoire

Pashov, A. D.; Shivarov, V.; Hadzhieva, M.; Kostov, V.; Ferdinandov, D.; Heinz, K.-M.; Pashova, S.; Todorova, M.; Vassilev, T. L.; Kieber-Emmons, T.; Meza-Zepeda, L. A.; Hovig, E.

10.1101/308973 — immunology — Posted on 2018-05-04

2276 Circadian Clock Regulation of the Secretory Pathway

Yeung, C.-Y. C.; Garva, R.; Pickard, A.; Chang, J.; Holmes, D. F.; Lu, Y.; Mallikarjun, V.; Swift, J.; Adamson, A.; Calverley, B.; Meng, Q. J.; Kadler, K. E.

10.1101/304014 — cell biology — Posted on 2018-05-04

2277 Environmentally controlled curvature of single collagen proteins

Rezaei, N.; Lyons, A.; Forde, N. R.

10.1101/279380 — biophysics — Posted on 2018-05-04

2278 Structure analysis of human Prion protein involved in Sporadic Fatal Insomnia

Camp, P. J.; Tabaee Damavandi, P.; Pickersgill, R. W.; Dove, M. T.

10.1101/314625 — bioinformatics — Posted on 2018-05-04

2279 Evidence of a Novel Vitivirus in Grapevine cv Riesling

Debat, H. J.; Zavallo, D.; Gomez-Talquenca, S.; Asurmendi, S.

10.1101/314674 — plant biology — Posted on 2018-05-04

2280 The trade-off between neural computation and oscillatory coordination.

Peterson, E. J.; Voytek, B.

10.1101/309427 — neuroscience — Posted on 2018-05-04

2281 A functional different immune capacity in cattle is associated with higher mastitis incidence

Lutterberg, K.; Kleinwort, K. J. H.; Hobmaier, B. F.; Hauck, S. M.; Nueske, S.; Scholz, A. M.; Deeg, C. A.

10.1101/311316 — immunology — Posted on 2018-05-04

2282 Genomic determinants of sympatric speciation of the Mycobacterium tuberculosis complex across evolutionary timescales.

Chiner-Oms, A.; Sanchez-Buso, L.; Corander, J.; Gagneux, S.; Harris, S.; Young, D.; Gonzalez-Candelas, F.; Comas, I.

10.1101/314559 — evolutionary biology — Posted on 2018-05-04

2283 Genomics of microgeographic adaptation in the Amazonian hyperdominant tree Eperua falcata Aubl. (Fabaceae).

Brousseau, L.; Fine, P. V. A.; Dreyer, E.; Vendramin, G. G.; Scotti, I.

10.1101/312843 — evolutionary biology — Posted on 2018-05-04

2284 The gene regulatory basis of genetic compensation during neural crest induction

Dooley, C. M.; Wali, N.; Sealy, I. M.; White, R. J.; Stemple, D. L.; Collins, J. E.; Busch-Nentwich, E. M.

10.1101/314534 — developmental biology — Posted on 2018-05-04

2285 Direct reprogramming of human epithelial cells into organoids by miR-106a-3p

Delom, F.; Puceat, M.; Fessart, D.

10.1101/314658 — cell biology — Posted on 2018-05-04

2286 Intracellular absorption underlies collective bacterial tolerance towards an antimicrobial peptide

Wu, F.; Tan, C.

10.1101/314138 — systems biology — Posted on 2018-05-04

2287 Fine-tuning cellular levels of DprA ensures transformant fitness in the human pathogen Streptococcus pneumoniae

Johnston, C.; Mortier-Barriere, I.; Khemici, V.; Polard, P.

10.1101/314575 — microbiology — Posted on 2018-05-04

2288 Single-Cell Transcriptome Sequencing Of Human Induced Pluripotent Stem Cells Identifies Differentially Primed Subpopulations

Nguyen, Q.; Lukowski, S.; Chiu, H.; Senabouth, A.; Bruxner, T.; Christ, A.; Palpant, N.; Powell, J.

10.1101/119255 — genomics — Posted on 2018-05-04

2289 Molecular Subtypes of Anaplastic Gliomas Identified with Somatic-Mutation and Pathway Based Gene Signature

Wardak, Z.; Park, S.; Zhu, H.; Choe, K.; Hwang, T. H.

10.1101/313924 — genomics — Posted on 2018-05-04

2290 Haplotype-based eQTL mapping finds evidence for complex gene regulatory regions poorly tagged by marginal SNPs

Brown, R. P.; Sankararaman, S.; Pasaniuc, B.

10.1101/314229 — genetics — Posted on 2018-05-04

2291 Common genetic variants contribute to risk of rare severe neurodevelopmental disorders

10.1101/309070 — genetics — Posted on 2018-05-04

2292 A different gut microbiome linked to inflammation found in cirrhotic patients with and without hepatocellular carcinoma

Pinero, F.; Vazquez, M. P.; Bare, P.; Rohr, C.; Mendizabal, M.; Sciara, M.; Alonso, C.; Fay, F.; Silva, M.

10.1101/125575 — cancer biology — Posted on 2018-05-04

2293 SQuIRE: Software for Quantifying Interspersed Repeat Elements

Yang, W. R.; Ardeljan, D.; Pacyna, C. N.; Payer, L. M.; Burns, K. H.

10.1101/313999 — bioinformatics — Posted on 2018-05-04

2294 Sperm morphology differences associated with pig fertility

Mandawala, A. A.; Skinner, B. M.; Walling, G. A.; Fowler, K. E.; Harvey, S.

10.1101/314708 — zoology — Posted on 2018-05-04

2295 Mosaic deletion patterns of the human antibody heavy chain gene locus

Gidoni, M.; Snir, O.; Peres, A.; Polak, P.; Lindeman, I.; Lundin, K. E. A.; Clouser, C.; Vigneault, F.; Collins, A. M.; Sollid, L. M.; Yaari, G.

10.1101/314476 — genomics — Posted on 2018-05-04

2296 A putative human infertility allele of the meiotic recombinase DMC1 does not affect fertility in mice

Tran, T. N.; Schimenti, J. C.

10.1101/313890 — genetics — Posted on 2018-05-04

2297 The Doublesex sex determination pathway regulates reproductive division of labor in honey bees

Velasque, M.; Qiu, L.; Mikheyev, A. S.

10.1101/314492 — genetics — Posted on 2018-05-04

2298 Selfish mutations dysregulating RAS-MAPK signaling are pervasive in aged human testes

Maher, G. J.; Ralph, H. K.; Ding, Z.; Koelling, N.; Mlcochova, H.; Giannoulatou, E.; Dhami, P.; Paul, D. S.; Stricker, S. S.; Beck, S.; McVean, G.; Wilkie, A. O.; Goriely, A.

10.1101/314815 — genetics — Posted on 2018-05-04

2299 Sound Colless-like balance indices for multifurcating trees

Mir Torres, A.; Rotger Garcia, L.; Rossello, F.

10.1101/313908 — evolutionary biology — Posted on 2018-05-04

2300 Genomic analysis of European Drosophila melanogaster populations on a dense spatial scale reveals longitudinal population structure and continent-wide selection

Kapun, M.; Barron Aduriz, M. G.; Staubach, F.; Vieira, J.; Obbard, D.; Goubert, C.; Rota Stabelli, O.; Kankare, M.; Haudry, A.; Wiberg, R. A. W.; Waidele, L.; Kozeretska, I.; Pasyukova, E.; Loeschcke, V.; Pascual, M.; Vieira, C. P.; Serga, S.; Montchamp-Moreau, C.; Abbott, J.; Gibert, P.; Porcelli, D.; Posnien, N.; Grath, S.; Sucena, E.; Bergland, A.; Garcia Guerreiro, M. P.; Onder, B. S.; Argyridou, E.; Guio, L.; Schou, M. F.; Deplancke, B.; Vieira, C.; Ritchie, M. G.; Zwaan, B.; Tauber, E.; Orengo, D.; Puerma, E.; Aguade, M.; Schmidt, P.; Parsch, J.; Betancourt, A.; Flatt, T.; Gonzalez, J.

10.1101/313759 — evolutionary biology — Posted on 2018-05-04

2301 LRH-1 Mitigates Intestinal Inflammatory Disease by Maintaining Epithelial Homeostasis and Cell Survival

Bayrer, J. R.; Wang, H.; Nattiv, R.; Suzawa, M.; Escusa, H. S.; Fletterick, R. J.; Klein, O. D.; Moore, D. D.; Ingraham, H.

10.1101/314302 — cell biology — Posted on 2018-05-04

2302 Polarity sorting drives remodeling of actin-myosin networks

Wollrab, V.; Belmonte, J. M.; Leptin, M.; Nedelec, F.; Koenderink, G. H.

10.1101/314484 — biophysics — Posted on 2018-05-04

2303 16S rRNA sequence embeddings: Meaningful numeric feature representations of nucleotide sequences that are convenient for downstream analyses

Woloszynek, S.; Zhao, Z.; Chen, J.; Rosen, G. L.

10.1101/314260 — bioinformatics — Posted on 2018-05-04

2304 isiKnock: in silico knockouts in biochemical pathways

Scheidel, J.; Giese, H.; Schweizer, B.; Amstein, L.; Ackermann, J.; Koch, I.

10.1101/313858 — bioinformatics — Posted on 2018-05-04

2305 Rapid, inexpensive measurement of synthetic bacterial community composition by Sanger sequencing

Cermak, N.; Datta, M. S.; Conwill, A.

10.1101/313932 — bioinformatics — Posted on 2018-05-04

2306 A single N1-methyladenosine on the large ribosomal subunit rRNA impacts locally its structure and the translation of key metabolic enzymes

Sharma, S.; Hartmann, J. D.; Watzinger, P.; Klepper, A.; Peifer, C.; Koetter, P.; Lafontaine, D. L.; Entian, K.-D.

10.1101/313874 — molecular biology — Posted on 2018-05-04

2307 Heterogeneous Absorption of Antimicrobial Peptide LL37 in Escherichia coli Cells Enhances Population Survivability

Snoussi, M.; Talledo, J. P.; Del Rosario, N.-A.; Ha, B.-Y.; Kosmrlj, A.; Taheri-Araghi, S.

10.1101/313536 — microbiology — Posted on 2018-05-04

2308 Comparison of antioxidant activity between cyanidin-3-O-glucoside (C3G) liposome and cyanidin-3-O-glucoside (C3G) in 2D and 3D cell cultures

Liang, T.; Guan, R.; Cao, G.; Shen, H.; Liu, Z.; Xia, Q.; Wang, Z.

10.1101/314369 — cell biology — Posted on 2018-05-04

2309 Structural basis for the RNA-guided ribonuclease activity of CRISPR-Cas13d

Zhang, C.; Konermann, S.; Brideau, N. J.; Lotfy, P.; Novick, S. J.; Strutzenberg, T.; Griffin, P. R.; Hsu, P. D.; Lyumkis, D.

10.1101/314401 — biochemistry — Posted on 2018-05-04

2310 Analysis of the human kinome and phosphatome reveals diseased signaling networks induced by overexpression

Lun, X.-K.; Szklarczyk, D.; Gabor, A.; Dobberstein, N.; Zanotelli, V. R. T.; Saez-Rodriguez, J.; von Mering, C.; Bodenmiller, B.

10.1101/314716 — systems biology — Posted on 2018-05-04

2311 A conformational sensor based on genetic code expansion reveals an autocatalytic component in EGFR activation

Baumdick, M.; Gelleri, M.; Uttamapinant, C.; Beranek, V.; Chin, J. W.; Bastiaens, P.

10.1101/314682 — molecular biology — Posted on 2018-05-04

2312 Cryptic adaptor protein interactions regulate DNA replication initiation

Matthews, L. A.; Simmons, L. A.

10.1101/313882 — microbiology — Posted on 2018-05-04

2313 Targeting comorbid diseases via network endopharmacology

Aguirre-Plans, J.; Pinero, J.; Menche, J.; Sanz, F.; Furlong, L. I.; Schmidt, H. H. H. W.; Oliva, B.; Guney, E.

10.1101/313809 — systems biology — Posted on 2018-05-04

2314 PepN is a non-essential, cell wall-localized protein that contributes to neutrophil elastase-mediated killing of Streptococcus pneumoniae

Nganje, C. N.; Haynes, S. A.; Qabar, C. M.; Lent, R. C.; Bou Ghanem, E. N.; Shainheit, M. G.

10.1101/313569 — microbiology — Posted on 2018-05-04

2315 Efficacy of fecal sampling as a gut proxy in the study of chicken gut microbiota

Yan, W.; Zheng, J.; WEN, C.; Ji, C.; Zhang, D.; Chen, Y.; Sun, C.; Yang, N.

10.1101/313577 — microbiology — Posted on 2018-05-04

2316 Frequency of disturbance alters diversity, function, and underlying assembly mechanisms of complex bacterial communities

Santillan, E.; Seshan, H.; Constancias, F.; Drautz-Moses, D. I.; Wuertz, S.

10.1101/313585 — microbiology — Posted on 2018-05-04

2317 Combinatorial quorum sensing in Pseudomonas aeruginosa allows for novel cheating strategies

Gurney, J.; Azimi, S.; McNally, A.; Brown, S. P.; Diggle, S. P.

10.1101/313502 — microbiology — Posted on 2018-05-04

2318 Distinct temporal requirements for Sonic hedgehog signaling in development of the tuberal hypothalamus

Epstein, D.; Corman, T.; Zevallos, S.

10.1101/314773 — developmental biology — Posted on 2018-05-04

2319 Defective DNA damage repair leads to frequent catastrophic genomic events in murine and human tumors

Ratnaparkhe, M.; Wong, J.; Wei, P.-C.; Hlevnjak, M.; Kolb, T.; Haag, D.; Paul, Y.; Devens, F.; Northcott, P.; Jones, D. T.; Kool, M.; Jauch, A.; Pastorczak, A.; Mlynarski, W.; Korshunov, A.; Kumar, R.; Downing, S.; Pfister, S.; Zapatka, M.; McKinnon, P. J.; Alt, F. W.; Lichter, P.; Ernst, A.

10.1101/314518 — cancer biology — Posted on 2018-05-04

2320 Prevalence of subclinical ketosis and production diseases in dairy cows in Central and South America, Africa, Asia, Australia and New Zealand, and Eastern Europe

Brunner, N.; Groeger, S.; Raposo, J.; Bruckmaier, R. M.; Gross, J. J.

10.1101/314898 — physiology — Posted on 2018-05-04

2321 CRISPR-Cas9 interference in cassava linked to the evolution of editing-resistant geminiviruses

Mehta, D.; Stürchler, A.; Hirsch-Hoffmann, M.; Gruissem, W.; Vanderschuren, H.

10.1101/314542 — plant biology — Posted on 2018-05-04

2322 crisprQTL mapping as a genome-wide association framework for cellular genetic screens

Gasperini, M.; Hill, A.; McFaline-Figueroa, J. L.; Martin, B.; Trapnell, C.; Ahituv, N.; Shendure, J.

10.1101/314344 — genomics — Posted on 2018-05-04

2323 Real time portable genome sequencing for global food security

10.1101/314526 — plant biology — Posted on 2018-05-04

2324 Nonparametric analysis of contributions to variance in genomics and epigenomics data

Moskowitz, D. M.; Greenleaf, W. J.

10.1101/314112 — bioinformatics — Posted on 2018-05-04

2325 Structural basis for the RNA-guided ribonuclease activity of CRISPR-Cas13d

Zhang, C.; Konermann, S.; Brideau, N. J.; Lotfy, P.; Novick, S. J.; Strutzenberg, T.; Griffin, P. R.; Hsu, P. D.; Lyumis, D.

10.1101/314401 — biochemistry — Posted on 2018-05-04

2326 Choline monooxygenase transcript expression triggers glycine betaine accumulation in Suaeda maritima when subjected to a salt concentration optimal for its growth

Kuttan, S.; Sankararamasubramanian, H.; Parida, A. K.

10.1101/314419 — plant biology — Posted on 2018-05-04

2327 Intraspecific Polymorphism for the Presence and Absence of Entire Mitochondrial Chromosomes

Wu, Z.; Sloan, D. B.

10.1101/313544 — plant biology — Posted on 2018-05-04

2328 Enterovirus 71 structural viral protein 1 promotes mouse Schwann cell autophagy via endoplasmic reticulum stress-mediated peripheral myelin protein 22 upregulation

Li, P.; Yang, S.; Hu, D.; Wei, D.; Lu, J.; Zheng, H.; Nie, S.; Liu, G.; Yang, H.

10.1101/314468 — cell biology — Posted on 2018-05-04

2329 Inactivation of Ppp1r15a minimises weight gain and insulin resistance during caloric excess in mice

Patel, V.; Bidault, G.; Chambers, J. E.; Carobbio, S.; Everden, A. J. T.; Garces, C.; Dalton, L. E.; Gribble, F. M.; Vidal-Puig, A.; Marciniak, S. J.

10.1101/313940 — physiology — Posted on 2018-05-04

2330 Lysyl oxidase inhibition drives the transdifferentiation from lung adenocarcinoma to squamous cell carcinoma in mice

yao, s.; Han, X.; Tong, X.; Li, F.; Qin, Z.; Huang, H.-Y.; Ji, H.

10.1101/314393 — cancer biology — Posted on 2018-05-04

2331 Detection of the altered metabolites of Raji cells in the presence of Epstein-Barr virus (EBV) using 1HNMR Spectroscopy

Dindar, Z.; Haji Hosseini, r.; vahhabpoor, r.; zamani, Z.

10.1101/314427 — cancer biology — Posted on 2018-05-04

2332 S100A8/A9 mediate the reprograming of normal mammary epithelial cells induced by dynamic cell-cell interactions with adjacent breast cancer cells.

Jo, S. H.; Heo, W. H.; Hong, B. S.; Kim, J. H.; Lee, J.; Lee, E.-S.; Lee, H.-B.; Han, W.; Park, Y.; Lee, D.-S.; Kwon, N. H.; Park, M. C.; Chae, J.; Kim, J.-I.; Noh, D.-Y.; Moon, H.-G.

10.1101/312884 — cancer biology — Posted on 2018-05-04

2333 Unsupervised Extraction of Epidemic Syndromes from Participatory Influenza Surveillance Self-reported Symptoms

Kalimeri, K.; Delfino, M.; Cattuto, C.; Perrotta, D.; Colizza, V.; Guerrisi, C.; Turbelin, C.; Duggan, J.; Edmunds, J.; Obi, C.; Pebody, R.; Mexia, R.; Franco, A.; Moreno, Y.; Meloni, S.; Koppeschaar, C.; Kjelso, C.; Paolotti, D.; Influenzanet,

10.1101/314591 — epidemiology — Posted on 2018-05-04

2334 Heart enhancers with deeply conserved regulatory activity are established early in development

Yuan, X.; Song, M.; Devine, P.; Bruneau, B. G.; Scott, I. C.; Wilson, M. D.

10.1101/312611 — genomics — Posted on 2018-05-04

2335 ESCRT-mediated lysosome repair precedes lysophagy and promotes cell survival

Radulovic, M.; Bongiovanni, A.; Schink, K. O.; Nähse-Kumpf, V.; Wenzel, E. M.; Lafont, F.; Stenmark, H.

10.1101/313866 — cell biology — Posted on 2018-05-03

2336 Enzyme promiscuity shapes evolutionary innovation and optimization

Guzman, G. I.; Sandberg, T. E.; LaCroix, R. A.; Nyerges, A.; Papp, H.; de Raad, M.; King, Z. A.; Northen, T. R.; Notebaart, R. A.; Pal, C.; Palsson, B. O.; Papp, B.; Feist, A. M.

10.1101/310946 — systems biology — Posted on 2018-05-03

2337 Perceived threat bias and reduced hippocampal volume in combat veterans

Grupe, D. W.; Hushek, B. A.; Ellis, K.; Schoen, A. J.; Wielgosz, J.; Nitschke, J. B.; Davidson, R. J.

10.1101/313221 — neuroscience — Posted on 2018-05-03

2338 Waves of maturation and senescence in micro-structural MRI markers of human cortical myelination over the lifespan

Grydeland, H.; Vertes, P. E.; Vasa, F.; Romero Garcia, R.; Whitaker, K. J.; Alexander-Bloch, A. F.; Bjornerud, A.; Patel, A. X.; Sedervicius, D.; Tamnes, C. K.; Westlye, L. T.; White, S. R.; Walhovd, K. B.; Fjell, A. M.; Bullmore, E. T.

10.1101/314195 — neuroscience — Posted on 2018-05-03

2339 Scalable continuous evolution of genes at mutation rates above genomic error thresholds

Ravikumar, A.; Arzumanyan, G. A.; Obadi, M. K. A.; Javanpour, A. A.; Liu, C. C.

10.1101/313338 — synthetic biology — Posted on 2018-05-03

2340 Opsonin-free, real-time imaging of Cryptococcus neoformans capsule during budding

Paes, H. C.; Frazao, S. O.; Rosa, C. P.; Albuquerque, P.; Casadevall, A.; Felipe, M. S.; Nicola, A. M.

10.1101/313429 — microbiology — Posted on 2018-05-03

2341 Comparing genome-wide association study results from different measurements of an underlying phenotype

Gage, J. L.; de Leon, N.; Clayton, M.

10.1101/313445 — genomics — Posted on 2018-05-03

2342 Identification of reference genes for real-time PCR gene expression studies during seed development and under abiotic stresses in Cyamopsis tetragonoloba (L.) Taub.

Jaiswal, P. S.; Kaur, N.; Randhawa, G.

10.1101/313437 — genetics — Posted on 2018-05-03

2343 Genetic architecture and selective sweeps after polygenic adaptation to distant trait optima

Stetter, M. G.; Thornton, K.; Ross-Ibarra, J.

10.1101/313247 — evolutionary biology — Posted on 2018-05-03

2344 The mechanics of predator-prey interactions: first principles of physics predict predator-prey size ratios

Portalier, S. M. J.; Fussmann, G. F.; Loreau, M.; Cherif, M.

10.1101/313239 — ecology — Posted on 2018-05-03

2345 Causal gene regulatory network inference using enhancer activity as a causal anchor

Vipin, D.; Wang, L.; Devailly, G.; Michoel, T.; Joshi, A.

10.1101/311167 — bioinformatics — Posted on 2018-05-03

2346 Automated cellular structure extraction in biological images with applications to calcium imaging data

Mishne, G.; Coifman, R. R.; Lavzin, M.; Schiller, J.

10.1101/313981 — neuroscience — Posted on 2018-05-03

2347 Benchmarking cryo-EM single particle analysis workflow

Kim, L. Y.; Carragher, B.; Rice, W. J.; Eng, E. T.; Kopylov, M.; Cheng, A.; Raczkowski, A. M.; Jordan, K. D.; Bobe, D.; Potter, C.

10.1101/311324 — molecular biology — Posted on 2018-05-03

2348 A mechanism-based computational model to capture the interconnections among epithelial-mesenchymal transition, cancer stem cells and Notch-Jagged signaling

Bocci, F.; Jolly, M. K.; George, J.; Levine, H.; Onuchic, J. N.

10.1101/314187 — cancer biology — Posted on 2018-05-03

2349 Reactivation of latent HIV-1 in vitro using an alcoholic extract from Euphorbia umbellata (Euphorbiaceae) latex.

Valadao, A. L.; Pezzuto, P.; Silva, V. A. O.; Goncalves, B. S.; Rossi, A. D.; Delvecchio, R.; Siani, A. C.; Tostes, J. B. d. F.; Trovo, M.; Damasco, P.; Goncalves, G.; Reis, R. M.; Santana, R.; Bento, C. A. d. M.; Tanuri, A.

10.1101/293662 — microbiology — Posted on 2018-05-03

2350 DUSP28 is a novel biomarker responsible for aggravating malignancy via the autocrine signaling pathways in metastatic pancreatic cancer

Kim, J. H.; Lee, J.; Lee, J.; Choi, C.

10.1101/313957 — cancer biology — Posted on 2018-05-03

2351 Criticality in Tumor Evolution and Clinical Outcome

Persi, E.; Wolf, Y. I.; Leiserson, M.; Koonin, E. V.; Ruppin, E.

10.1101/314021 — cancer biology — Posted on 2018-05-03

2352 An ancestral role of pericentrin in centriole formation through SAS-6 recruitment

Ito, D.; Zitouni, S.; Jana, S. C.; Duarte, P.; Surkont, J.; Carvalho-Santos, Z.; Pereira-Leal, J. B.; Godinho Ferreira, M.; Bettencourt-Dias, M.

10.1101/313494 — cell biology — Posted on 2018-05-03

2353 Self-organization of Plk4 regulates symmetry breaking in centriole duplication.

Yamamoto, S.; Kitagawa, D.

10.1101/313635 — cell biology — Posted on 2018-05-03

2354 Rab27a co-ordinates actin-dependent transport by controlling organelle-associated motors and track assembly proteins.

Alzahofi, N.; Robinson, C. L.; Welz, T.; Page, E. L.; Briggs, D. A.; Stainthorp, A. K.; Reekes, J.; Elbe, D. A.; Straub, F.; Tate, E. W.; Goff, P. S.; Sviderskaya, E. V.; Cantero, M.; Montoliu, L.; Bailly, M.; Kerkhoff, E.; Hume, A. N.

10.1101/314153 — cell biology — Posted on 2018-05-03

2355 Loading of piperlongumine to liposomes after complexation with β-cyclodextrin and its effect on viability of colon and prostate cancer cells

Jayawardana, K. W.; Jyotsana, N.; Zhang, Z.; King, M.

10.1101/314161 — bioengineering — Posted on 2018-05-03

2356 Autophagy is essential for optimal Fe translocation to seeds in Arabidopsis

Pottier, M.; Dumont, J.; Masclaux-Daubresse, C.; Thomine, S.

10.1101/313254 — plant biology — Posted on 2018-05-03

2357 A conserved glycine harboring disease-associated mutations is required for slow deactivation and high Ca2+ permeability in NMDA receptors

Amnin, J.; Leng, X.; Gochmann, A.; Zhou, H.-X.; Wollmuth, L.

10.1101/313452 — neuroscience — Posted on 2018-05-03

2358 Levodopa and dopamine dynamics in Parkinson’s disease metabolomics

Branco, R. C.; Ellsworth, W.; Niedzwiecki, M. M.; Butkovich, L. M.; Walker, D. I.; Huddleston, D. E.; Jones, D. P.; Miller, G. W.

10.1101/306266 — neuroscience — Posted on 2018-05-03

2359 Phenotype-specific information improves prediction of functional impact for noncoding variants

Bodea, C. A.; Mitchell, A. A.; Day-Williams, A. G.; Runz, H.; Sunyaev, S. R.

10.1101/083642 — genomics — Posted on 2018-05-03

2360 Uncovering the drivers of host-associated microbiota with joint species distribution modeling

Björk, J. R.; Hui, F. K. C.; O'Hara, R. B.; Montoya, J. M.

10.1101/137943 — microbiology — Posted on 2018-05-03

2361 The summary diagram of discovered host immunological pathways against different pathogens and its relation to hypersensitivities

Hu, W.

10.1101/006965 — immunology — Posted on 2018-05-03

2362 Mycobacteria recycle their peptidoglycan via a novel pathway which influences antimicrobial resistance and limits proliferation in macrophages.

Moynihan, P. J.; Maceiras, A. R.; Cadby, I. T.; Veerapen, N.; Jankute, M.; Crosatti, M.; Mukamolova, G.; Maceiras, A. R.; Saraiva, M.; Lovering, A. L.; Besra, G. S.

10.1101/312876 — microbiology — Posted on 2018-05-03

2363 Whale watching with BulkVis: A graphical viewer for Oxford Nanopore bulk fast5 files.

Payne, A.; Holmes, N.; Rakyan, V.; Loose, M.

10.1101/312256 — genomics — Posted on 2018-05-03

2364 On The Number Of Siblings And p-th Cousins In A Large Population Sample

Shchur, V.; Nielsen, R.

10.1101/145599 — evolutionary biology — Posted on 2018-05-03

2365 Estimating epidemic incidence and prevalence from genomic data

Vaughan, T. G.; Leventhal, G. E.; Rasmussen, D. A.; Drummond, A. J.; Welch, D.; Stadler, T.

10.1101/142570 — epidemiology — Posted on 2018-05-03

2366 Recurrent Auto-Encoding Drift Diffusion Model

Moens, V.; Zenon, A.

10.1101/220517 — neuroscience — Posted on 2018-05-03

2367 An ensemble code in medial prefrontal cortex links prior events to outcomes during learning

Maggi, S.; Peyrache, A.; Humphries, M.

10.1101/187948 — neuroscience — Posted on 2018-05-03

2368 The Opportunity Cost of Time Modulates Cognitive Effort

Otto, A. R.; Daw, N.

10.1101/201863 — neuroscience — Posted on 2018-05-03

2369 Resting-State fMRI Dynamics and Null Models: Perspectives, Sampling Variability, and Simulations

Miller, R. L.; Abrol, A.; Adali, T.; Levin-Schwartz, Y.; Calhoun, V. D.

10.1101/153411 — neuroscience — Posted on 2018-05-03

2370 A Portable Structural Analysis Library for Reaction Networks

Bedaso, Y. M.; Bergmann, F.; Choi, K. M.; Sauro, H. M.

10.1101/245068 — systems biology — Posted on 2018-05-03

2371 Species delimitation in the presence of strong incomplete lineage sorting and hybridization: lessons from Ophioderma (Ophiuroidea: Echinodermata)

Weber, A. A.-T.; Stöhr, S.; Chenuil, A.

10.1101/240218 — evolutionary biology — Posted on 2018-05-03

2372 Testing the phylogenetic gambit: how much functional diversity can we reliably conserve if we prioritize phylogenetic diversity?

Mazel, F.; Pennell, M.; Cadotte, M.; Diaz, S.; Dalla Riva, G.; Grenyer, R.; Leprieur, F.; Mooers, A.; Mouillot, D.; Tucker, C.; Pearse, W.

10.1101/243923 — ecology — Posted on 2018-05-03

2373 Distinct encoding of decision confidence in human medial prefrontal cortex

Bang, D.; Fleming, S. M.

10.1101/251330 — neuroscience — Posted on 2018-05-03

2374 Competence Inhibition by the XrpA Peptide Encoded Within the comX Gene of Streptococcus mutans

Kaspar, J.; Shields, R.; Burne, R.

10.1101/265223 — microbiology — Posted on 2018-05-03

2375 Disentangling genetically confounded polygenic associations between Attention-Deficit/Hyperactivity Disorder, literacy and language

Verhoef, E.; Demontis, D.; Burgess, S.; Shapland, C. Y.; Dale, P. S.; Okbay, A.; Neale, B. M.; Faraone, S. V.; iPSYCH-Broad-PGC ADHD Consortium, ; Stergiakouli, E.; Davey Smith, G.; Fisher, S. E.; Borglum, A.; St Pourcain, B.

10.1101/276527 — genetics — Posted on 2018-05-03

2376 Establishment of locally adapted mutations under divergent selection

Tomasini, M.; Peischl, S.

10.1101/248013 — evolutionary biology — Posted on 2018-05-03

2377 Inferring health conditions from fMRI-graph data

Porta Mana, P.; Bachmann, C.; Morrison, A.

10.1101/295113 — neuroscience — Posted on 2018-05-03

2378 The perception of color and material in natural tasks

Brainard, D. H.; Cottaris, N. P.; Radonjic, A.

10.1101/288662 — neuroscience — Posted on 2018-05-03

2379 Natural selection on gene-specific codon usage bias is common across eukaryotes

Peng, Z.; Zaher, H.; Ben-Shahar, Y.

10.1101/292938 — evolutionary biology — Posted on 2018-05-03

2380 High impact journals in ecology cover proportionally more statistically significant findings

Ceausu, S.; Borda-de-Agua, L.; Merckx, T.; Sossai, E.; Sapage, M.; Miranda, M.; Pereira, H. M.

10.1101/311068 — scientific communication and education — Posted on 2018-05-03

2381 Probing the chemical-biological relationship space with the Drug Target Explorer

Allaway, R.; La Rosa, S.; Guinney, J.; Gosline, S. J.

10.1101/308700 — pharmacology and toxicology — Posted on 2018-05-03

2382 Isopeptide-Blocker Impairs the Mechanics of Recently Translated Pilin Proteins

Rivas-Pardo, J. A.; Tapia-Rojo, R.; Badilla, C. L.; Fernandez, J. M.

10.1101/310227 — biophysics — Posted on 2018-05-03

2383 Germline genomic landscapes of breast cancer patients significantly predict clinical outcomes

Milanese, J.-S.; Tibiche, C.; Zaman, N.; Zou, J.; Han, P.; Meng, Z. G.; Nantel, A.; Droit, A.; Wang, E.

10.1101/312355 — cancer biology — Posted on 2018-05-03

2384 Principal component analysis based unsupervised feature extraction applied to single cell gene expression analysis

Taguchi, Y.-h.

10.1101/312892 — bioinformatics — Posted on 2018-05-03

2385 A survey on information sources used by academic researchers to evaluate scientific instruments

Bergenholtz, C.; MacAulay, S. C.; Kolympiris, C.; Seim, I.

10.1101/253799 — scientific communication and education — Posted on 2018-05-03

2386 Interneuronal gap junctions increase synchrony and robustness of hippocampal ripple oscillations

Holzbecher, A.; Kempter, R.

10.1101/311662 — neuroscience — Posted on 2018-05-03

2387 Polymer translocation through nano-pores: influence of pore and polymer deformation

Shahzad, M. A.

10.1101/313684 — biophysics — Posted on 2018-05-03

2388 Histone deacetylase HDA19 affects cortical cell fate by interacting with SCARECROW in the Arabidopsis root

Chen, W.; Drapek, C.; Li, D.; Xu, Z.; Benfey, P.; Bai, S.

10.1101/313791 — plant biology — Posted on 2018-05-03

2389 Anti-BP180 Autoantibodies Are Present in Stroke and Recognize Human Cutaneous BP180 and BP180-NC16A

Wang, Y.; Mao, X.; Wang, D.; Hammers, C. M.; Payne, A. S.; Wang, Y.; Jin, H.; Peng, B.; Li, L.

10.1101/313692 — neuroscience — Posted on 2018-05-03

2390 The ClpX chaperone controls the Staphylococcus aureus cell cycle but can be bypassed by β-lactam antibiotics

Baek, K. T.; Jensen, C.; Gallay, C.; Fisker, N. S.; Thalsoe-Madsen, I.; Pereira, A. R.; Paulander, W.; Veening, J.-W.; Pinho, M. G.; Frees, D.

10.1101/313668 — microbiology — Posted on 2018-05-03

2391 Dominant negative FADD/MORT1 inhibits the development of intestinal intraepithelial lymphocytes with a marked defect on CD8αα+TCRγδ+ T cells

Zhang, X.; Huo, L.; Song, L.; Hu, Z.; Wang, X.; Han, Y.; Wang, Y.; Xu, P.; Zhang, J.; Hua, Z.-C.

10.1101/313742 — immunology — Posted on 2018-05-03

2392 Response to \"No evidence of functional co-adaptation between clustered microRNAs\"

Wang, Y.; Zhang, H.; Lu, J.

10.1101/313817 — evolutionary biology — Posted on 2018-05-03

2393 Genomic analysis of European Drosophila melanogaster populations on a dense spatial scale reveals longitudinal population structure and continent-wide selection

10.1101/313759 — evolutionary biology — Posted on 2018-05-03

2394 Water motion as a transformation mechanism of algal communities structure in Lake Baikal

Kravtsova, L.; Mizandrontsev, I.; Vorobyova, S.; Izhboldina, L.; Mincheva, E.; Potyomkina, T.; Triboy, T.; Khanaev, I.; Sherbakov, D.; Fedotov, A.

10.1101/313650 — ecology — Posted on 2018-05-03

2395 Substrate binding allosterically relieves autoinhibition of the TRIB1 pseudokinase

Jamieson, S. A.; Ruan, Z.; Burgess, A. E.; Curry, J. R.; McMillan, H. D.; Brewster, J. L.; Dunbier, A. K.; Axtman, A. D.; Natarajan, K.; Mace, P. D.

10.1101/313767 — biochemistry — Posted on 2018-05-03

2396 Switch costs in inhibitory control and goal-directed behavior: A computational study of the antisaccade task

Aponte, E. A.; Stephan, K. E.; Heinzle, J.

10.1101/313643 — animal behavior and cognition — Posted on 2018-05-03

2397 The Pseudomonas aeruginosa complement of lactate dehydrogenases enables use of D- and L-lactate and metabolic crossfeeding

Lin, Y.-C.; Cornell, W. C.; Price-Whelan, A.; Dietrich, L. E. P.

10.1101/313593 — microbiology — Posted on 2018-05-03

2398 Nonmuscle myosin II shRNA inhibit migration and contraction in rat hepatic stellate cells through regulating AKT/mTOR/S6K/4EBP1 signaling pathway

Li, Z.; Feng, Y.; Zhang, R.; Wang, P.; Lu, L.; Dong, Y.

10.1101/313601 — cell biology — Posted on 2018-05-03

2399 3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification

Kalinin, A. A.; Allyn-Feuer, A.; Ade, A.; Fon, G.-V.; Meixner, W.; Dilworth, D.; de Wet, J. R.; Higgins, G. A.; Zheng, G.; Creekmore, A.; Wiley, J. W.; Verdone, J. E.; Veltri, R. W.; Pienta, K. J.; Coffey, D. S.; Athey, B. D.; Dinov, I. D.

10.1101/313411 — bioinformatics — Posted on 2018-05-03

2400 Encoding of Tactile Context in the Mouse Visual Cortex

Kandler, S.; Mao, D.; McNaughton, B. L.; Bonin, V.

10.1101/199364 — neuroscience — Posted on 2018-05-02

2401 Quantification of Enterohemorrhagic Escherichia coli O157:H7 proteome using TMT-Based Analysis

Marques da Silva, W.; Bei, J.; Amigo, N.; Valacco, P.; Amadio, A. F.; Zhang, Q.; Wu, X.; yu, t.; Larzabal, M.; Chen, Z.; Cataldi, A.

10.1101/312652 — microbiology — Posted on 2018-05-02

2402 Two Isoforms of the Guanine Nucleotide Exchange Factor, Daple/CCDC88C Cooperate as Tumor Suppressors

Dunkel, Y.; Ear, J.; Mittal, Y.; Lim, B.; Liu, L.; Holda, M.; Nitsche, U.; Barbazan, J.; Goel, A.; Janssen, K.-P.; Aznar, N.; Ghosh, P.

10.1101/312934 — cancer biology — Posted on 2018-05-02

2403 Organometallic gold(III) Cl (L1 = SNS-donating thiosemicarbazone) complex protects mice against acute T. cruzi infection

Lopes, C. D.; Gaspari, A. P. S.; Oliveira, R. J.; Abram, U.; Almeida, J. P. A.; Maia, P. I. d. S.; da Silva, J.; de Albuquerque, S.; CARNEIRO, Z. A.

10.1101/312702 — pharmacology and toxicology — Posted on 2018-05-02

2404 Evaluation of Sb-1 bacteriophage activity in enhancing antibiotic efficacy against biofilm, degrading the exopolysaccharide matrix and targeting persister cells of Staphylococcus aureus

Tkhilaishvili, T.; Lombardi, L.; Klatt, A.-B.; Trampuz, A.; Di Luca, M.

10.1101/312736 — microbiology — Posted on 2018-05-02

2405 Krüppel like factor 2 - deficient myeloid cells promote skeletal muscle regeneration after injury

Manoharan, P.; Song, T.; Radzyukevich, T. L.; Sadayappan, S.; Lingrel, J. B.; Heiny, J. A.

10.1101/312868 — immunology — Posted on 2018-05-02

2406 Positively interacting strains that circulate in a network structured population induce cycling epidemics of Mycoplasma Pneumoniae

Zhang, X.-S.; Zhao, H.; Vynnycky, E.; Chalker, V.

10.1101/312066 — epidemiology — Posted on 2018-05-02

2407 Basidiobolus haptosporus-like fungus as a causal agent of gastrointestinal basidiobolomycosis and its link to the common house gecko (Hemidactylus frenatus) as a potential risk factor

Al Bshabshe, A.; Joseph, M. R. P.; AL-HAKAMI, A. M.; Al Azraqi, T.; Al Humayed, S.; Hamid, M. E.

10.1101/311936 — epidemiology — Posted on 2018-05-02

2408 Short-term effectiveness of HIV care coordination among persons with recent HIV diagnosis or history of poor HIV outcomes

Nash, D.; Robertson, M.; Penrose, K.; Chamberlin, S.; Robbins, R. R.; Braunstein, S. L.; Myers, J. E.; Abraham, B.; Kulkarni, S.; Waldro, L.; Levin, B.; Irvine, M. K.

10.1101/311597 — epidemiology — Posted on 2018-05-02

2409 Exploring how generation intervals link strength and speed of epidemics

Park, S. W.; Champredon, D.; Weitz, J.; Dushoff, J.

10.1101/312397 — epidemiology — Posted on 2018-05-02

2410 Supporting global biodiversity assessment through high-resolution macroecological modelling: Methodological underpinnings of the BILBI framework

Hoskins, A. J.; Harwood, T. D.; Ware, C.; Williams, K. J.; Perry, J. J.; Ota, N.; Croft, J. R.; Yeates, D. K.; Jetz, W.; Golebiewski, M.; Purvis, A.; Ferrier, S.

10.1101/309377 — ecology — Posted on 2018-05-02

2411 Environmental factors shape methionine metabolism in p16/MTAP deleted cells

Sanderson, S. M.; Mikhael, P.; Dai, Z.; Locasale, J. W.

10.1101/313288 — molecular biology — Posted on 2018-05-02

2412 Immunogenicity landscape of cytotoxic T lymphocyte epitopes in sequence space

Ogishi, M.; Yotsuyanagi, H.

10.1101/155317 — immunology — Posted on 2018-05-02

2413 Intestinal microbiota of whitefish (Coregonus sp.) species pairs and their hybrids in natural and controlled environment.

Sevellec, M.; Laporte, M.; Bernatchez, A.; Derome, N.; Bernatchez, L.

10.1101/312231 — evolutionary biology — Posted on 2018-05-02

2414 Cortical spike multiplexing using gamma frequency latencies

Ballard, D.; Zhang, R.

10.1101/313320 — neuroscience — Posted on 2018-05-02

2415 Computational Modeling of the Dynamic Biomarker Cascade in Alzheimer’s Disease

Petrella, J.; Hao, W.; Rao, A.; Doraiswamy, M.; Alzheimer's Disease Computational Modeling Initiative,

10.1101/313353 — neuroscience — Posted on 2018-05-02

2416 Increased cognitive complexity reveals abnormal brain network activity in individuals with corpus callosum dysgenesis

Hearne, L. J.; Dean, R. J.; Robinson, G. A.; Richards, L. J.; Mattingley, J. B.; Cocchi, L.

10.1101/312629 — neuroscience — Posted on 2018-05-02

2417 Genome Wide Association Scan identifies new variants associated with a cognitive predictor of dyslexia.

Gialluisi, A.; Andlauer, T. F.; Mirza-Schreiber, N.; Moll, K.; Hoffmann, P.; Ludwig, K. U.; Czamara, D.; Francks, C.; St Pourcain, B.; Brandler, W.; Honbolygo, F.; Toth, D.; Csepe, V.; Huguet, G.; Morris, A. P.; Hulslander, J.; Willcutt, E. G.; DeFries, J. C.; Olson, R. K.; Smith, S. D.; Pennington, B. F.; Vaessen, A.; Maurer, U.; Lyytinen, H.; Peyrard-Janvid, M.; Leppanen, P. H.; Brandeis, D.; Bonte, M.; Stein, J. F.; Talcott, J.; Fauchereau, F.; Bourgeron, T.; Monaco, A. P.; Ramus, F.; Landerl, K.; Kere, J.; Scerri, T. S.; Paracchini, S.; Fisher, S. E.; Schumacher, J.; Nothen, M. M.; Muller-

10.1101/309336 — genomics — Posted on 2018-05-02

2418 Characterizing animal movement patterns across different scales and habitats using information theory

Owoeye, K. A.; Musolesi, M.; Hailles, S.

10.1101/311241 — ecology — Posted on 2018-05-02

2419 Four decades of plant community change along a continental gradient of warming

Becker-Scarpitta, A.; Vissault, S.; Vellend, M.

10.1101/313379 — ecology — Posted on 2018-05-02

2420 OligoPVP: Phenotype-driven analysis of individual genomic information to prioritize oligogenic disease variants

Boudellioua, I.; Kulmanov, M.; Schofield, P. N.; Gkoutos, G. V.; Hoehndorf, R.

10.1101/311654 — bioinformatics — Posted on 2018-05-02

2421 h-channels contribute to divergent electrophysiological properties of supragranular pyramidal neurons in human versus mouse cerebral cortex

Kalmbach, B.; Buchin, A.; Miller, J. A.; Bakken, T. E.; Hodge, R. D.; Chong, P.; de Frates, R.; Dai, K.; Gwinn, R. P.; Cobbs, C.; Ko, A. L.; Ojemann, J. G.; Silbergeld, D. L.; Koch, C.; Anastassiou, C. A.; Lein, E.; Ting, J. T.

10.1101/312298 — neuroscience — Posted on 2018-05-02

2422 Differential contributions of subthalamic beta rhythms and neural noise to Parkinson motor symptoms

Martin, S.; Iturrate, I.; Chavarriaga, R.; Leeb, R.; Sobolewski, A.; Li, A. M.; Zaldivar, J.; Peciu-Florianu, I.; Pralong, E.; Castro-Jimenez, M.; Benninger, D.; Vingerhoets, F.; Knight, R. T.; Bloch, J.; Millan, J. d. R.

10.1101/312819 — neuroscience — Posted on 2018-05-02

2423 A competitive binding model predicts nonlinear responses of olfactory receptors to complex mixtures

Singh, V.; Murphy, N. R.; Balasubramanian, V.; Mainland, J. D.

10.1101/311514 — neuroscience — Posted on 2018-05-02

2424 Generation of white-eyed Daphnia magna mutants lacking scarlet function

Nur Izzatur, I. B.; Kato, Y.; Matsuura, T.; Watanabe, H.

10.1101/313395 — genetics — Posted on 2018-05-02

2425 Protein Docking using Constrained Self-adaptive Differential Evolution Algorithm

Sudha, S.; Baskar, S.; Krishnaswamy, S.

10.1101/312801 — bioinformatics — Posted on 2018-05-02

2426 Broom: Application for non-redundant storage of High Throughput Sequencing data

Albayrak, L.; Khanipov, K.; Golovko, G.; Fofanov, Y.

10.1101/312306 — bioinformatics — Posted on 2018-05-02

2427 Excitable dynamics of NREM sleep: a unifying model for neocortex and hippocampus

Levenstein, D.; Buzsaki, G.; Rinzel, J.

10.1101/312587 — neuroscience — Posted on 2018-05-02

2428 simGWAS: a fast method for simulation of large scale case-control GWAS summary statistics

Fortune, M. D.; Wallace, C.

10.1101/313023 — genomics — Posted on 2018-05-02

2429 Pollen metabarcoding as a tool for tracking long-distance insect migrations.

Suchan, T.; Talavera, G.; Saez, L.; Ronikier, M.; Vila, R.

10.1101/312363 — ecology — Posted on 2018-05-02

2430 Principal component analysis based unsupervised feature extraction applied to single cell gene expression analysis

Taguchi, Y.-h.

10.1101/312892 — bioinformatics — Posted on 2018-05-02

2431 Integrative analysis of single cell genomics data by coupled nonnegative matrix factorizations

Duren, Z.; Chen, X.; Zamanighomi, M.; Zeng, W.; Satpathy, A.; Chang, H.; Wang, Y.; Wong, W. H.

10.1101/312348 — bioinformatics — Posted on 2018-05-02

2432 Adaptation and inhibition control pathological synchronization in a model of focal epileptic seizure

Buchin, A.; Kerr, C. C.; Huberfeld, G.; Miles, R.; Gutkin, B.

10.1101/312561 — neuroscience — Posted on 2018-05-02

2433 A Rev-CBP80-eIF4AI complex drives Gag synthesis from the HIV-1 unspliced mRNA

Toro-Ascuy, D.; Rojas-Araya, B.; Garcia-de-Gracia, F.; Rojas-Fuentes, C.; Pereira-Montecinos, C.; Gaete-Argel, A.; Valiente-Echeverria, F.; Ohlmann, T.; Soto-Rifo, R.

10.1101/313312 — molecular biology — Posted on 2018-05-02

Nagy, O.; Nuez, I.; Savisaar, R.; Peluffo, A. E.; Yassin, A.; Lang, M.; Stern, D. L.; Matute, D.; David, J. R.; Courtier-Orgogozo, V.

10.1101/313197 — evolutionary biology — Posted on 2018-05-02

2435 Myosin-II activity generates a dynamic steady state with continuous actin turnover in a minimal actin cortex

Sonal, ; Ganzinger, K. A.; Vogel, S. K.; Muecksch, J.; Blumhardt, P.; Schwille, P.

10.1101/312512 — biophysics — Posted on 2018-05-02

2436 Circularly shifted filters enable data efficient sequence motif inference with neural networks

Blum, C. F.; Kollmann, M.

10.1101/312959 — bioinformatics — Posted on 2018-05-02

2437 ngsReports: An R Package for managing FastQC reports and other NGS related log files.

Ward, C. M.; To, H.; Pederson, S. M.

10.1101/313148 — bioinformatics — Posted on 2018-05-02

2438 Bootstrapping EEG-based auditory attention detection systems: boundary conditions for background noise and speaker positions

Das, N.; Bertrand, A.; Francart, T.

10.1101/312827 — bioengineering — Posted on 2018-05-02

2439 Diverse homeostatic responses to visual deprivation by uncovering recurrent subnetworks

Sweeney, Y.; Barnes, S.; Clopath, C.

10.1101/312926 — neuroscience — Posted on 2018-05-02

2440 White Matter Network Architecture Guides Direct Electrical Stimulation Through Optimal State Transitions

Stiso, J.; Khambhati, A. N.; Menara, T.; Kahn, A. E.; Stein, J. M.; Das, S. R.; Gorniak, R.; Tracy, J.; Litt, B.; Davis, K. A.; Pasqualetti, F.; Lucas, T. H.; Bassett, D. S.

10.1101/313304 — neuroscience — Posted on 2018-05-02

2441 Assessing distinct patterns of cognitive aging using tissue-specific brain age prediction based on diffusion tensor imaging and brain morphometry

Richard, G.; Kolskaar, K.; Sanders, A.-M.; Kaufmann, T.; Petersen, A.; Doan, N. T.; Monereo Sanchez, J.; Alnaes, D.; Ulrichsen, K. M.; Solberg Dorum, E.; Andreassen, O.; Nordvik, J. E.; Tjelta Westlye, L.

10.1101/313015 — neuroscience — Posted on 2018-05-02

2442 Diagnostic Use of PCR in Carbapenamase-producing Enterobacteriaceae (CPE): An Improved Method to Overcome the presence of inhibitors for DNA Extraction from Blood Cultures

Salmuna, Z. N.; Hassan, M.

10.1101/312686 — microbiology — Posted on 2018-05-02

2443 CRISPR-Cas blocks antibiotic resistance plasmid transfer between Enterococcus faecalis strains in the gastrointestinal tract

Price, V. J.; McBride, S. W.; Duerkop, B.; Palmer, K. L.

10.1101/312751 — microbiology — Posted on 2018-05-02

2444 Extensive transfer of membrane lipid biosynthetic genes between Archaea and Bacteria

Coleman, G. A.; Pancost, R. D.; Williams, T. A.

10.1101/312991 — evolutionary biology — Posted on 2018-05-02

2445 Misoprostol regulates Bnip3 repression and alternative splicing to control cellular calcium homeostasis during hypoxic stress.

Field, J. T.; Martens, M. D.; Mughal, W.; Hai, Y.; Chapman, D.; Hatch, G. M.; Ivanco, T. L.; Diehl-Jones, W.; Gordon, J. W.

10.1101/313163 — cell biology — Posted on 2018-05-02

2446 Enhanced context reveals the scope of somatic missense mutations driving human cancers

Tokheim, C.; Karchin, R.

10.1101/313296 — bioinformatics — Posted on 2018-05-02

2447 Drug repurposing: omeprazole increases the efficacy of acyclovir against herpes simplex virus type 1 and 2

Michaelis, M.; Kleinschmidt, M. C.; Wass, M. N.; Cinatl, J.

10.1101/313072 — pharmacology and toxicology — Posted on 2018-05-02

2448 A single pair of leucokinin neurons are modulated by feeding state and regulate sleep-metabolism interactions

Yurgel, M. E.; Kakad, P.; Zandawala, M.; Nassel, D. R.; Godenschwege, T. A.; Keene, A.

10.1101/313213 — neuroscience — Posted on 2018-05-02

2449 Interaction between Retinoschisin and Norrin: Physical or Functional Relationship?

Sudha, D.; Chidambaram, S.; Arunachalam, J. P.

10.1101/312165 — molecular biology — Posted on 2018-05-02

2450 Analysis of 19 Highly Conserved Vibrio cholerae Bacteriophages Isolated from Environmental and Patient Sources Over a Twelve-Year Period

Angermeyer, A.; Das, M. M.; Singh, D. V.; Seed, K. D.

10.1101/313346 — microbiology — Posted on 2018-05-02

2451 Human T cell receptor occurrence patterns encode immune history, genetic background, and receptor specificity

DeWitt, W. S.; Smith, A.; Schoch, G.; Hansen, J. A.; Matsen, F. A.; Bradley, P. H.

10.1101/313106 — immunology — Posted on 2018-05-02

2452 Genomics of microgeographic adaptation in the hyperdominant Amazonian tree Eperua falcata Aubl. (Fabaceae).

Brousseau, L.; Fine, P. V. A.; Dreyer, E.; Vendramin, G. G.; Scotti, I.

10.1101/312843 — evolutionary biology — Posted on 2018-05-02

2453 Identification of the interaction of 2-aminosteroids with G-quadruplex in BCR/ABL gene promoter: An emerging potential target for treatment of human chronic myelogenous leukemia

He, Q.; Yang, H.; Beijing Zhendong Pharm Institute,

10.1101/310557 — cancer biology — Posted on 2018-05-02

2454 An Assessment of Skin Lesion Measurement Techniques for Use in Clinical Trials of Acute Bacterial Skin and Skin Structure Infections

Dunne, M. W.; Talbot, G. H.; Das, A.

10.1101/312710 — pathology — Posted on 2018-05-02

2455 Quantification of human gut microbiota variability using replicate sampling and spike-in sequencing

Ji, B. W.; Sheth, R. U.; Dixit, P. D.; Wang, H. H.; Vitkup, D.

10.1101/310649 — microbiology — Posted on 2018-05-02

2456 The SMAC Mimetic AZD5582 is a Potent HIV Latency Reversing Agent

Sampey, G. C.; Irlbeck, D. M.; Browne, E. P.; Kanke, M.; McAllister, A. B.; Ferris, R. G.; Brehm, J. H.; Favre, D.; Routy, J.-P.; Jones, C. D.; Archin, N. M.; Margolis, D. M.; Dunham, R.

10.1101/312447 — microbiology — Posted on 2018-05-02

2457 A high-throughput method for unbiased quantitation and categorisation of nuclear morphology

Skinner, B. M.; Rathje, C. C.; Bacon, J.; Johnson, E. E. P.; Larson, E. L.; Kopania, E. E. K.; Good, J. M.; Yousafzai, G.; Affara, N. A.; Ellis, P. J. I.

10.1101/312470 — genomics — Posted on 2018-05-02

2458 Cis-activation in the Notch signaling pathway

Elowitz, M. B.; Santat, L. A.; Nandagopal, N.

10.1101/313171 — bioinformatics — Posted on 2018-05-02

2459 One-step assembly of large CRISPR arrays enables multi-functional targeting and reveals constraints on array design

Liao, C.; Ttofali, F.; Slotkowski, R. A.; Denny, S. R.; Cecil, T. D.; Leenay, R. T.; Keung, A. J.; Beisel, C. L.

10.1101/312421 — synthetic biology — Posted on 2018-05-02

2460 A novel multi-perspective imaging platform (M-PIP) for phenotyping soybean root crowns in the field increases throughput and separation ability of genotype root properties

Seethepalli, A.; York, L. M.; Almtarfi, H.; Fritschi, F. B.; Zare, A.

10.1101/309161 — physiology — Posted on 2018-05-02

2461 Detecting and harmonizing scanner differences in the ABCD study - annual release 1.0

Nielson, D. M.; Pereira, F.; Zheng, C. Y.; Migineishvili, N.; Lee, J. A.; Thomas, A. G.; Bandettini, P. A.

10.1101/309260 — neuroscience — Posted on 2018-05-02

2462 Germline genomic landscapes of breast cancer patients significantly predict clinical outcomes

Milanese, J.-S.; Tibiche, C.; Zaman, N.; Zou, J.; Han, P.; Meng, Z. G.; Nantel, A.; Droit, A.; Wang, E.

10.1101/312355 — cancer biology — Posted on 2018-05-02

2463 Proteostasis perturbation destabilizes respiratory complex assembly-intermediates via aggregation of subunits

Rawat, S.; Valpadashi, A.; Jha, M.; K, S.; Ghosh, A.; Ganguly, D.; Raychaudhuri, S.

10.1101/312793 — molecular biology — Posted on 2018-05-02

2464 DDX41 recognizes RNA/DNA retroviral reverse transcripts and is critical for in vivo control of MLV infection

Stavrou, S.; Aguilera, A.; Blouch, K.; Ross, S. R.

10.1101/312777 — microbiology — Posted on 2018-05-02

2465 Adaptive Partitioning of the tRNA Interaction Interface by Aminoacyl-tRNA-Synthetases

Collins-Hed, A.; Ardell, D. H.

10.1101/312462 — evolutionary biology — Posted on 2018-05-02

2466 A Genome-Wide Association Analysis Reveals a Role for Recombination in the Evolution of Antimicrobial Resistance in Burkholderia multivorans

Diaz Caballero, J.; Clark, S. T.; Wang, P. W.; Donaldson, S. L.; Coburn, B.; Tullis, D. E.; Yau, Y. C.; Waters, V. J.; Hwang, D. M.; Guttman, D.

10.1101/313205 — evolutionary biology — Posted on 2018-05-02

2467 babette: BEAUti 2, BEAST2 and Tracer for R

Bilderbeek, R. J. C.; Etienne, R. S.

10.1101/271866 — bioinformatics — Posted on 2018-05-02

2468 Mapping DNA damage-dependent genetic interactions in yeast via party mating and barcode fusion genetics

Diaz-Mejia, J. J.; Celaj, A.; Mellor, J. C.; Cote, A.; Balint, A.; Ho, B.; Bansal, P.; Shaeri, F.; Gebbia, M.; Weile, J.; Verby, M.; Karkhanina, A.; Zhang, Y.; Wong, C.; Rich, J.; Prendergast, D.; Gupta, G.; Ozturk, S.; Durocher, D.; Brown, G. W.; Roth, F. P.

10.1101/181750 — systems biology — Posted on 2018-05-02

2469 A theta rhythm in macaque visual cortex and its attentional modulation

Spyropoulos, G.; Bosman, C. A.; Fries, P.

10.1101/117804 — neuroscience — Posted on 2018-05-02

2470 Stress-induced formation of cell wall-deficient cells in filamentous actinomycetes

Ramijan, K.; Ultee, E.; Willemse, J.; Wondergem, J.; Heinrich, D.; Briegel, A.; van Wezel, G.; Claessen, D.

10.1101/094037 — microbiology — Posted on 2018-05-02

2471 Network controllability: viruses are driver agents in dynamic molecular systems

Ravindran, V.; Nacher, J. C.; Akutsu, T.; Ishitsuka, M.; Osadcenco, A.; Sunitha, V.; Bagler, G.; Schwartz, J.-M.; Robertson, D. L.

10.1101/311746 — systems biology — Posted on 2018-05-02

2472 Modelling mitosis with multiple phenotypes: relation to Haeckel’s recapitulation law

Alexandrov, Y.

10.1101/253203 — physiology — Posted on 2018-05-02

2473 Activations of Deep Convolutional Neural Network are Aligned with Gamma Band Activity of Human Visual Cortex

Kuzovkin, I.; Vicente, R.; Petton, M.; Lachaux, J.-P.; Baciu, M.; Kahane, P.; Rheims, S.; Vidal, J. R.; Aru, J.

10.1101/133694 — neuroscience — Posted on 2018-05-02

2474 DNA Gap Repair-Mediated Site-Directed Mutagenesis is Different from Mandecki and Recombineering Approaches

Lyozin, G. T.; Brunelli, L.

10.1101/313155 — molecular biology — Posted on 2018-05-02

2475 A Real Time PCR Assay for Quantification of Parasite Burden in Murine Models of Leishmaniasis

Antonia, A. L.; Wang, L.; Ko, D. C.

10.1101/312330 — microbiology — Posted on 2018-05-02

2476 The molecular basis of antigenic variation among A(H9N2) avian influenza viruses

Peacock, T. P.; Harvey, W.; Sadeyen, J.-R.; Reeve, R.; Iqbal, M.

10.1101/312967 — microbiology — Posted on 2018-05-02

2477 Baculovirus utilizes cholesterol transporter Niemann-Pick C1 for host cell entry

Li, Z.; Wei, J.; Fan, Y.; Mei, X.; He, Q.; Zhang, Y.; Li, T.; Long, M.; Chen, J.; Liu, T.-B.; Bao, J.; Xiang, Z.; Pan, G.; Li, C.; Zhou, Z.

10.1101/312744 — microbiology — Posted on 2018-05-02

2478 A proteolytic complex targets multiple cell wall hydrolases in Pseudomonas aeruginosa

Srivastava, D.; Seo, J.; Rimal, B.; Kim, S. J.; Darwin, A. J.

10.1101/260620 — microbiology — Posted on 2018-05-02

2479 Interaction of septin 7 and DOCK8 in equine lymphocytes reveals novel insights into signaling pathways associated with autoimmunity

Schauer, M.; Kleinwort, K. J. H.; Degroote, R. L.; Wiedemann, C.; Kremmer, E.; Hauck, S. M.; Deeg, C. A.

10.1101/251819 — immunology — Posted on 2018-05-02

2480 Overcome Competitive Exclusion in Ecosystems

Wang, X.; Liu, Y.-Y.

10.1101/312645 — ecology — Posted on 2018-05-02

2481 Hunter-gatherers maintain assortativity in cooperation despite high-levels of residential change and mixing

Smith, K.; Larroucau, T.; Mabulla, I. A.; Apicella, C. L.

10.1101/313064 — animal behavior and cognition — Posted on 2018-05-02

2482 Population Pharmacokinetics Study of Morinidazole in Patients with Moderate Hepatic Impairment

Kang, Y.; Xu, F.; Wang, K.; Zhang, J.; Wu, X.-j.; Wu, J.; Cao, G.-y.; Yu, J.; Guo, B.-n.; Chen, Y.-c.; Zhang, Y.-y.

10.1101/312728 — pharmacology and toxicology — Posted on 2018-05-02

2483 A Pan-Cancer Transcriptome Analysis Reveals Pervasive Regulation through Tumor-Associated Alternative Promoters

Demircioglu, D.; Kindermans, M.; Nandi, T.; Cukuroglu, E.; Calabrese, C.; Fonseca, N. A.; Kahles, A.; Lehmann, K.; Stegle, O.; PCAWG Transcriptome Working Group, ; ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Network, ; Brazma, A.; Brooks, A.; Rätsch, G.; Tan, P.; Göke, J.

10.1101/176487 — genomics — Posted on 2018-05-02

2484 Large-scale experimental removal of non-native slider turtles has unexpected consequences on basking behavior for both conspecifics and a native, threatened turtle

LAMBERT, M. R.; McKenzie, J.; Screen, R.; Clause, A.; Johnson, B.; Mount, G.; Shaffer, H. B.; Pauly, G.

10.1101/312173 — ecology — Posted on 2018-05-02

2485 ColE1 plasmids potentiate the fitness of Salmonella Heidelberg in poultry litter

Oladeinde, A.; Cook, K.; Orlek, A.; Zock, G.; Herrington, K.; Cox, N.; Plumblee Lawrence, J.; Hall, C.

10.1101/312322 — ecology — Posted on 2018-05-02

2486 Cryo-EM structures reveal dynamic interplay of nascent chain-processing factors on the ribosome

Bhakta, S.; Akbar, S.; Biswas, C.; Sengupta, J.

10.1101/312850 — biochemistry — Posted on 2018-05-02

2487 Altered Fecal Microbiota and Urine Metabolome as Signatures of Soman Poisoning

Gautam, A.; Getnet, D.; Kumar, R.; Hoke, A.; Cheema, A. K.; Rossetti, F.; Schultz, C. R.; Hammamieh, R.; Lange, L. A.; Jett, M.

10.1101/312660 — physiology — Posted on 2018-05-02

2488 Adaptation after vastus lateralis denervation in rats suggests neural regulation of joint stresses and strains

Alessandro, C.; Rellinger, B. A.; Barroso, F. O.; Tresch, M. C.

10.1101/312488 — neuroscience — Posted on 2018-05-02

2489 Effect of Lactobacillus reuteri on intestinal microflora and immune parameters: involvement of sex differences

He, J.; Wu, L.; Pan, D.; wu, Z.; Guo, Y.; Zeng, X.; Lian, L.

10.1101/312678 — microbiology — Posted on 2018-05-02

2490 Polyomavirus T-Antigen Induces APOBEC3B Expression using a LXCXE-Dependent and TP53-Independent Mechanism

Starrett, G.; Serebrenik, A.; Roelofs, P.; Verhalen, B.; McCann, J.; Jarvis, M.; Stewart, T.; Law, E.; Krupp, A.; Jiang, M.; Martens, J.; Span, P.; Cahir-McFarland, E.; Harris, R.

10.1101/312595 — microbiology — Posted on 2018-05-02

2491 Exploring the genetic correlations of antisocial behavior and life history traits

Tielbeek, J.; Barnes, J. C.; Popma, A.; Polderman, T.; Lee, J. J.; Perry, J. B.; Posthuma, D.; Boutwell, B. B.

10.1101/247411 — genomics — Posted on 2018-05-02

2492 Dual-layer transposon repression in heads of Drosophila melanogaster

van den Beek, M.; da Silva, B.; Pouch, J.; Ali Chaouche, M. e. a.; Carre, C.; Antoniewski, C.

10.1101/267039 — genetics — Posted on 2018-05-02

2493 The spatial and temporal dynamics of the nuclear RNAi-targeted RNA transcripts in Caenorhabditis elegans

Ni, J. Z.; Kalinava, N.; Mendoza, S. G.; Gu, S. G.

10.1101/303230 — developmental biology — Posted on 2018-05-02

2494 DeepPVP: phenotype-based prioritization of causative variants using deep learning

Boudellioua, I.; Kulmanov, M.; Schofield, P. N.; Gkoutos, G. V.; Hoehndorf, R.

10.1101/311621 — bioinformatics — Posted on 2018-05-02

2495 Structural survey of HIV-1-neutralizing antibodies targeting Env trimer delineates epitope categories and suggests vaccine templates

Chuang, G.-Y.; Zhou, J.; Rawi, R.; Shen, C.-H.; Sheng, Z.; West, A. P.; Zhang, B.; Zhou, T.; Bailer, R. T.; Doria-Rose, N. A.; Louder, M. K.; McKee, K.; Mascola, J. R.; Bjorkman, P. J.; Shapiro, L.; Kwong, P. D.

10.1101/312579 — bioinformatics — Posted on 2018-05-02

2496 Structural basis for transfer RNA mimicry by a bacterial Y RNA

Wang, W.; Chen, X.; Wolin, S. L.; Xiong, Y.

10.1101/312249 — biochemistry — Posted on 2018-05-02

2497 Dynamic gait transition in the Scolopendromorpha scolopocryptops rubiginosus L. Koch centipede

Kuroda, S.; Uchida, N.; Nakagaki, T.

10.1101/312280 — animal behavior and cognition — Posted on 2018-05-02

2498 Implications for human odor sensing revealed from the statistics of odorant-receptor interactions

Bak, J. H.; Jang, S.; Hyeon, C.

10.1101/283010 — systems biology — Posted on 2018-05-02

2499 Analog closed-loop optogenetic modulation of hippocampal pyramidal cells dissociates gamma frequency and amplitude

Nicholson, E.; Kuzmin, D.; Leite, M.; Akam, T. E.; Kullmann, D. M.

10.1101/279588 — neuroscience — Posted on 2018-05-02

2500 WhiB6 is required for the secretion-dependent regulation of ESX-1 substrates in pathogenic mycobacteria.

Abdallah, A. M.; Weerdenburg, E.; Guan, Q.; Ummels, R.; Borggreve, S.; Adroub, S.; Malas, T.; Naeem, R.; Zhang, H.; Otto, T.; Bitter, W.; Pain, A.

10.1101/297440 — microbiology — Posted on 2018-05-02

2501 Single cell RNA-seq reveals profound transcriptional similarity between Barretts esophagus and esophageal glands

Owen, R. P.; White, M. J.; Severson, D. T.; Braden, B.; Bailey, A.; Goldin, R.; Wang, L. M.; Maynard, N.; Green, A.; Piazza, P.; Buck, D.; Middleton, M.; Ponting, C.; Schuster-Boeckler, B.; Lu, X.

10.1101/313049 — genetics — Posted on 2018-05-02

2502 Embedding containerized workflows inside data science notebooks enhances reproducibility

Hu, J.; Hung, L.-H.; Yeung, K. Y.

10.1101/309567 — bioinformatics — Posted on 2018-05-02

2503 GLUE: A flexible software system for virus sequence data

Singer, J. B.; Thomson, E. C.; McLauchlan, J.; Hughes, J.; Gifford, R. J.

10.1101/269274 — bioinformatics — Posted on 2018-05-02

2504 Modulation of TOR kinase activity in Chlamydomonas reinhardtii: Effect of N-starvation and changing carbon pool

Upadhyaya, S.; Agrawal, S.; Gorakshakar, A.; Rao, B. J.

10.1101/312942 — plant biology — Posted on 2018-05-02

2505 Optimizing the identification of causal variants across varying genetic architectures in crops

Miao, C.; Yang, J.; Schnable, J. C.

10.1101/310391 — genomics — Posted on 2018-05-02

2506 Comparative analysis of droplet-based ultra-high-throughput single-cell RNA-seq systems

Zhang, X.; Li, T.; Liu, F.; Chen, Y.; Li, Z.; Huang, Y.; Wang, J.

10.1101/313130 — genomics — Posted on 2018-05-02

2507 Comprehensive variant effect predictions of single nucleotide variants in model organisms

Wagih, O.; Busby, B.; Galardini, M.; Memon, D.; Typas, A.; Beltrao, P.

10.1101/313031 — genomics — Posted on 2018-05-02

2508 BGEN: a binary file format for imputed genotype and haplotype data

Band, G.; Marchini, J.

10.1101/308296 — bioinformatics — Posted on 2018-05-02

2509 Diagnosis of Human Leptospirosis: High Resolution Melting Analysis for Direct Detection of Leptospira in the Early Stage of the Disease in a Clinical Setting

Esteves, L. M.; Bulhoes, S. M.; Castelo Branco, C. C.; Carreira, T.; Vieira, M. L. L.; Gomes-Solecki, M.; Mota-Vieira, L.

10.1101/311142 — microbiology — Posted on 2018-05-02

2510 Planned missing data design: stronger inferences, increased research efficiency and improved animal welfare in ecology and evolution

Noble, D. W. A.; Nakagawa, S.

10.1101/247064 — ecology — Posted on 2018-05-02

2511 Exploring Drivers of Gene Expression in The Cancer Genome Atlas

Rau, A.; Flister, M. J.; Rui, H.; Livermore Auer, P.

10.1101/227926 — cancer biology — Posted on 2018-05-02

2512 Melissa: Bayesian clustering and imputation of single cell methylomes

Kapourani, C.-A.; Sanguinetti, G.

10.1101/312025 — bioinformatics — Posted on 2018-05-02

2513 Local Cortical Activity Of Distant Brain Areas Can Phase-Lock To The Respiratory Rhythm In The Freely Behaving Rat

Rojas-Libano, D.; Wimmer del Solar, J.; Aguilar, M.; Montefusco-Siegmund, R.; Maldonado, P. E.

10.1101/259457 — neuroscience — Posted on 2018-05-02

2514 Determining Allele-Specific Protein Expression (ASPE) Using a QconCAT-Based Proteomics Method: a Novel Approach to Identify Cis-acting Genetic Variants

Shi, J.; Wang, X.; Zhu, H.; Jiang, H.; Wang, D.; Nesvizhskii, A.; Zhu, H.-J.

10.1101/264614 — molecular biology — Posted on 2018-05-02

2515 Density-dependent selection and the limits of relative fitness

Bertram, J.; Masel, J.

10.1101/102087 — evolutionary biology — Posted on 2018-05-02

2516 Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale

Bishara, A.; Moss, E. L.; Tkachenko, E.; Kang, J. B.; Zlitni, S.; Culver, R. N.; Andermann, T. M.; Weng, Z.; Wood, C.; Handy, C.; Ji, H.; Batzoglou, S.; Bhatt, A. S.

10.1101/125211 — bioinformatics — Posted on 2018-05-02

2517 Precision Identification of Diverse Bloodstream Pathogens from the Gut Microbiome

Tamburini, F. B.; Andermann, T. M.; Tkachenko, E.; Senchyna, F.; Banaei, N.; Bhatt, A. S.

10.1101/310441 — genomics — Posted on 2018-05-02

2518 Negative Cooperativity between Gemin2 and RNA Determines RNA Selection and Release of the SMN Complex in snRNP Assembly

Yi, H.; Mu, L.; Shen, C.; Kong, X.; Wang, Y.; Hou, Y.; Zhang, R.

10.1101/312124 — molecular biology — Posted on 2018-05-02

2519 MECP2 duplication and mutations impair NSCs differentiation via miR-197 regulated ADAM10

Wang, Y.; Zheng, Y.; Yang, S.; Yang, Z.; Zhang, L.-n.; He, Y.-q.; Gong, X.; Liu, D.; Finnell, R. H.; Qiu, Z.; Du, Y.; Wang, H.

10.1101/312983 — developmental biology — Posted on 2018-05-02

2520 DNA structure change induced by guanosine radicals -- a theoretical and spectroscopic study

Kobierski, J. D.; Lipiec, E.

10.1101/312413 — biophysics — Posted on 2018-05-02

2521 Internal Tensile Force and A2 Domain Unfolding of von Willebrand Factor Multimers in Shear Flow

Morabito, M. J.; Dong, C.; Wei, W.; Zhang, X. F.; Cheng, X.; Oztekin, A.; Webb, E.

10.1101/312405 — biophysics — Posted on 2018-05-02

2522 Synthetic-evolution reveals that phosphoregulation of the mitotic kinesin-5 Cin8 is constrained

Goldstein, A.; Goldman, D.; Valk, E.; Loog, M.; Holt, L.; Gheber, L.

10.1101/312637 — cell biology — Posted on 2018-05-02

2523 Neuromechanical phase lag predicts material and neural control properties in Caenorhabditis elegans

Denham, J. E.; Ranner, T.; Cohen, N.

10.1101/312389 — neuroscience — Posted on 2018-05-01

2524 Minor sequence modifications in temporin B cause drastic changes in antibacterial potency and selectivity by fundamentally altering membrane activity

Manzo, G.; Ferguson, P. M.; Gustilo, V. B.; Ali, H.; Bui, T. T.; Drake, A. F.; Atkinson, R. A.; Batoni, G.; Lorenz, C. D.; Phoenix, D. A.; Mason, A. J.

10.1101/312215 — biophysics — Posted on 2018-05-01

2525 Optical alignment device for two-photon microscopy

Galinanes, G.; Marchand, P. J.; Turcotte, R.; Pellat, S.; Ji, N.; Huber, D.

10.1101/312207 — neuroscience — Posted on 2018-05-01

2526 Intrinsic and Extrinsic Modulation of C. elegans Locomotion

Denham, J. E.; Ranner, T.; Cohen, N.

10.1101/312132 — neuroscience — Posted on 2018-05-01

2527 Olfactory marker protein regulates refinement of the glomerular map

Albeanu, D. F.; Provost, A. C.; Agarwal, P.; Soucy, E.; Murthy, V. N.

10.1101/309401 — neuroscience — Posted on 2018-05-01

2528 Membrane insertion of α-xenorhabdolysin in near-atomic detail

Schubert, E.; Vetter, I. R.; Prumbaum, D.; Penczek, P. A.; Raunser, S.

10.1101/312314 — molecular biology — Posted on 2018-05-01

2529 Simu-dependent clearance of dying cells regulates macrophage function and inflammation resolution

Roddie, H. G.; Armitage, E. L.; Johnston, S. A.; Evans, I. R.

10.1101/312496 — cell biology — Posted on 2018-05-01

2530 PLK4 is a microtubule-associated protein that self assembles promoting de novo MTOC formation

Montenegro Gouveia, S.; Zitouni, S.; Kong, D.; Duarte, P.; Ferreira Gomes, B.; Sousa, A. L.; Tranfield, E. M.; Hyman, A.; Loncarek, J.; Bettencourt-Dias, M.

10.1101/312272 — cell biology — Posted on 2018-05-01

2531 Amino acids stimulate the endosome-to-Golgi trafficking through Ragulator and small GTPase Arl5

Shi, M.; Chen, B.; Boh, B. K.; Zhou, Y.; Divyanshu, M.; Tie, H. C.; Lu, L.

10.1101/312546 — cell biology — Posted on 2018-05-01

2532 Robust high content assessment of heterogeneous drug effects in 3D microenvironments

Siruvallur Murali, V.; Chang, B.-J.; Fiolka, R.; Danuser, G.; Cobanoglu, M. C.; Welf, E.

10.1101/312504 — cancer biology — Posted on 2018-05-01

2533 Super-resolution tracking of mitochondrial dynamics with a third-row transition metal complex dye

Chen, Q.; Jin, C.; Shao, X.; Guan, R.; Tian, Z.; Wang, C.; Liu, F.; Ling, P.; Guan, J.-L.; Ji, L.; Wang, F.; Chao, H.; Diao, J.

10.1101/312371 — biophysics — Posted on 2018-05-01

2534 Towards automation of germline variant curation in clinical cancer genetics

Ravichandran, V.; Shameer, Z.; Kemel, Y.; Walsh, M.; Cadoo, K.; Lipkin, S.; Mandelker, D.; Zhang, L.; Stadler, Z.; Robson, M.; Offit, K.; Joseph, V.

10.1101/295865 — genetics — Posted on 2018-05-01

2535 Quantifying differences between passive and task-evoked intrinsic functional connectivity in a large-scale brain simulation

Ulloa, A.; Horwitz, B.

10.1101/250894 — neuroscience — Posted on 2018-05-01

2536 GrandPrix: Scaling up the Bayesian GPLVM for single-cell data

Ahmed, S.; Rattray, M.; Boukouvalas, A.

10.1101/227843 — bioinformatics — Posted on 2018-05-01

2537 Reproducible model development in the Cardiac Electrophysiology Web Lab

Daly, A. C.; Clerx, M.; Beattie, K. A.; Cooper, J.; Gavaghan, D. J.; Mirams, G. R.

10.1101/257683 — systems biology — Posted on 2018-05-01

2538 Acute effects of drugs on C. elegans movement reveal complex responses and plasticity

Spensley, M. A.; Del Borrello, S.; Pajkic, D.; Fraser, A. G.

10.1101/299719 — genetics — Posted on 2018-05-01

2539 INDEX-db: The Indian Exome Reference database (Phase-I)

Ahmed P, H.; V, V.; More, R. P.; Rao, M. S.; Viswanath, B.; Jain, S.; Mukherjee, O.; ADBS Consortium,

10.1101/312090 — genomics — Posted on 2018-05-01

2540 Redox fluctuations control the coupled cycling of iron and carbon in tropical forest soils

Bhattacharyya, A.; Campbell, A. N.; Tfaily, M. M.; Lin, Y.; Silver, W. L.; Nico, P. S.; Pett-Ridge, J.

10.1101/312108 — ecology — Posted on 2018-05-01

2541 Sex Determination in the garden lizard, Calotes versicolor: Is Environment a Factor?

Raman, R.; Priyanka, P.

10.1101/312058 — developmental biology — Posted on 2018-05-01

2542 Further expansion of methane metabolism in the Archaea

Wang, Y.; Huang, Z.; Goh, K. M.; Evans, P. N.; Liu, L.; Mao, Y.; Hugenholtz, P.; Tyson, G. W.; Li, W.; Zhang, T.

10.1101/312082 — microbiology — Posted on 2018-05-01

2543 Molecular architecture of the Legionella Dot/Icm type IV secretion system

Ghosal, D.; Chang, Y.-W.; Jeong, K. C.; Vogel, J. P.; Jensen, G.

10.1101/312009 — microbiology — Posted on 2018-05-01

2544 Restriction of chromatin accessibility is necessary for appropriate enhancer expression

Hagey, D. W.; Klum, S.; Zaouter, C.; Muhr, J.

10.1101/311993 — developmental biology — Posted on 2018-05-01

2545 A non-canonical lysosome biogenesis pathway generates Golgi-associated lysosomes during epidermal differentiation

Mahanty, S.; Dakappa, S. S.; Shariff, R.; Patel, S.; Swamy, M. M.; Majumdar, A.; Gangi Setty, S. R.

10.1101/312033 — cell biology — Posted on 2018-05-01

2546 Melissa: Bayesian clustering and imputation of single cell methylomes

Kapourani, C.-A.; Sanguinetti, G.

10.1101/312025 — bioinformatics — Posted on 2018-05-01

2547 Noise Analysis in Biochemical Complex Formation

Xu, Z.; Ghusinga, K. R.; Singh, A.

10.1101/310847 — systems biology — Posted on 2018-05-01

2548 Sensory neuron lineage mapping and manipulation in the Drosophila olfactory system

Chai, P. C.; Cruchet, S.; Wigger, L.; Benton, R.

10.1101/312074 — neuroscience — Posted on 2018-05-01

2549 pheno-seq - linking 3D phenotypes of clonal tumor spheroids to gene expression

Tirier, S. M.; Park, J.; Preusser, F.; Amrhein, L.; Gu, Z.; Steiger, S.; Mallm, J.-P.; Waschow, M.; Eismann, B.; Gut, M.; Gut, I. G.; Rippe, K.; Schlesner, M.; Theis, F.; Fuchs, C.; Ball, C. R.; Glimm, H.; Eils, R.; Conrad, C.

10.1101/311472 — genomics — Posted on 2018-05-01

2550 Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers

Leroy, T.; Rougemont, Q.; Dupouey, J.-L.; Bodenes, C.; Lalanne, C.; Belser, C.; Labadie, K.; Le Provost, G.; Aury, J.-M.; Kremer, A.; Plomion, C.

10.1101/246637 — evolutionary biology — Posted on 2018-05-01

2551 YAMP: a containerised workflow enabling reproducibility in metagenomics research

Visconti, A.; Martin, T. C.; Falchi, M.

10.1101/223016 — bioinformatics — Posted on 2018-05-01

2552 Modern human origins: multiregional evolution of autosomes and East Asia origin of Y and mtDNA

Yuan, D.; Lei, X.; Gui, Y.; Zhu, Z.; Wang, D.; Yu, J.; Huang, S.

10.1101/101410 — evolutionary biology — Posted on 2018-05-01

2553 A genetically-encoded fluorescent acetylcholine indicator

Jing, M.; Zhang, P.; Wang, G.; Jiang, H.; Mesik, L.; Feng, J.; Zeng, J.; Wang, S.; Looby, J.; Guagliardo, N. A.; Langma, L. W.; Lu, J.; Zuo, Y.; Talmage, D. A.; Role, L. W.; Barrett, P. Q.; Zhang, L. I.; Luo, M.; Song, Y.; Zhu, J. J.; Li, Y.

10.1101/311126 — neuroscience — Posted on 2018-05-01

2554 Circadian Clock Regulation of the Secretory Pathway

Yeung, C.-Y. C.; Garva, R.; Pickard, A.; Chang, J.; Holmes, D. F.; Lu, Y.; Mallikarjun, V.; Swift, J.; Adamson, A.; Calverley, B.; Meng, Q. J.; Kadler, K. E.

10.1101/304014 — cell biology — Posted on 2018-05-01

2555 Cas9/CRISPR genome editing to demonstrate the contribution of Cyp51A Gly138Ser to azole resistance in Aspergillus fumigatus

Umeyama, T.; Hayashi, Y.; Shimosaka, H.; Inukai, T.; Yamagoe, S.; Takatsuka, S.; Hoshino, Y.; Nagi, M.; Nakamura, S.; Kamei, K.; Ogawa, K.; Miyazaki, Y.

10.1101/311712 — microbiology — Posted on 2018-05-01

2556 Enhancer control of miR-155 expression in Epstein-Barr virus infected B cells

Wood, C. D.; Carvell, T.; Gunnell, A.; Ojeniyi, O. O.; Osborne, C. S.; West, M. J.

10.1101/311886 — cancer biology — Posted on 2018-05-01

2557 Skyhawk: An Artificial Neural Network-based discriminator for reviewing clinically significant genomic variants

Luo, R.; Lam, T.-W.; Schatz, M.

10.1101/311985 — bioinformatics — Posted on 2018-05-01

2558 The Biological Evaluation of Fusidic Acid and Its Hydrogenation Derivative as Antimicrobial and Anti-inflammatory Agents

Wu, P.; He, H.; Hong, W. D.; Wu, T.; Zhao, S.; Cui, X.; Zhong, Y.; Li, D.; Xu, X.; Sheng, Z.; Tu, B.; Gao, M.; Zhou, J.; Ward, S.; O'Neill, P. M.; Zhang, K.

10.1101/311951 — pharmacology and toxicology — Posted on 2018-05-01

2559 The Impact of Remediation Through Stabilizing Amendments on Taxonomic and Metabolic Patterns of Bacteria and Archaea in Cadmium-Contaminated Paddy Fields in Southwestern China

Chen, Y.; Pan, L. L.; Jiang, Q. Q.; Chen, F. F.; Xie, D. M.; Lai, C. X.; Chen, Q. W.; Tao, W. Z.

10.1101/311902 — microbiology — Posted on 2018-05-01

2560 Effects of Fecal Source Input, Environmental Conditions, and Environmental Sources on Enterococci Concentrations in a Coastal Ecosystem

Rothenheber, D.; Jones, s.

10.1101/311928 — microbiology — Posted on 2018-05-01

2561 Dissecting the herpesvirus architecture by targeted proteolysis

Daniel, G. R.; Pegg, C. E.; Smith, G. A.

10.1101/311894 — microbiology — Posted on 2018-05-01

2562 Worldwide impacts of past and projected future land-use change on local species richness and the Biodiversity Intactness Index

Hill, S. L. L.; Gonzalez, R.; Sanchez-Ortiz, K.; Caton, E.; Espinoza, F.; Newbold, T.; Tylianakis, J.; Scharlemann, J. P. W.; De Palma, A.; Purvis, A.

10.1101/311787 — ecology — Posted on 2018-05-01

2563 Ghrelin enhances food odor conditioning in healthy humans: an fMRI study

Han, J. E.; Frasnelli, J. A.; zeighami, y.; Larcher, K.; Boyle, J. A.; McConnell, T.; Malik, S.; Jones-Gotman, M.; Dagher, A.

10.1101/311738 — neuroscience — Posted on 2018-05-01

2564 Recurrent Loss of APOBEC3H Activity during Primate Evolution

Garcia, E. I.; Emerman, M.

10.1101/311878 — microbiology — Posted on 2018-05-01

2565 Illuminating the microbiome’s dark matter: a functional genomic toolkit for the study of human gut Actinobacteria

Bisanz, J. E.; Soto-Perez, P.; Lam, K. N.; Bess, E. N.; Haiser, H. J.; Allen-Vercoe, E.; Rekdal, V. M.; Balskus, E. P.; Turnbaugh, P. J.

10.1101/304840 — microbiology — Posted on 2018-05-01

2566 Evaluation of the GenoType MTBDRplus and MTBDRsl for the detection of drug-resistant Mycobacterium tuberculosis on isolates from Beijing,China

Jian, J.; Yang, X.; Yang, J.; Chen, L.

10.1101/311944 — microbiology — Posted on 2018-05-01

2567 Antioxidant activity and phycoremediation ability of four cyanobacterial isolates obtained from a stressed aquatic system

badr, O. A.; El-garhy, H. A. S.; mustafa, M.; Farid, O.

10.1101/311860 — genetics — Posted on 2018-05-01

2568 Characterization of a human-specific tandem repeat associated with bipolar disorder and schizophrenia

Song, J.; Lowe, C. B.; Kingsley, D. M.

10.1101/311795 — genetics — Posted on 2018-05-01

2569 Spatiotemporally controlled Myosin relocalization and internal pressure cause biased cortical extension to generate sibling cell size asymmetry

Pham, T. T.; Monnard, A.; Helenius, J.; Lund, E.; Lee, N.; Mueller, D.; Cabernard, C.

10.1101/311852 — cell biology — Posted on 2018-05-01

2570 Intestinal bacteria modulate the foraging behavior of the Oriental fruit fly Bactrocera dorsalis (Diptera: Tephritidae)

Mazarin, A.; Andongma, A. A.; Zhengzhong, C.; Nan, J.; Khaeso, K.; Jurkevitch, E.; Niu, C.; Yuval, B.

10.1101/311910 — animal behavior and cognition — Posted on 2018-05-01

Archive, 2018-05