bioRxiv directory

Kitti Csályi;Dávid Fazekas;Tamás Kadlecsik;Dénes Türei;Leila Gul;Balázs Horváth;Dezső Módos;Amanda Demeter;Nóra Pápai;Katalin Lenti;Péter Csermely;Tibor Vellai;Tamás Korcsmáros;Máté Varga;

10.1101/041822 — Bioinformatics — Posted on 2016-02-29

3 Evidence for selective attention in the insect brain

Benjamin L de Bivort;Bruno van Swinderen;

10.1101/041889 — Neuroscience — Posted on 2016-02-29

4 Dissecting resistance mechanisms in melanoma combination therapy

Eunjung Kim;Alexander Anderson;

10.1101/041855 — Cancer Biology — Posted on 2016-02-29

5 Assessment of Circulating Copy Number Variant Detection for Cancer Screening

Bhuvan Molparia;Eshaan Nichani;Ali Torkamani;

10.1101/041848 — Bioinformatics — Posted on 2016-02-29

6 Vcfanno: fast, flexible annotation of genetic variants

Brent Pedersen;Ryan Layer;Aaron Quinlan;

10.1101/041863 — Bioinformatics — Posted on 2016-02-29

7 Sensitive red protein calcium indicators for imaging neural activity

Hod Dana;Boaz Mohar;Yi Sun;Sujatha Narayan;Andrew Gordus;Jeremy P Hasseman;Getahun Tsegaye;Graham T Holt;Amy Hu;Deepika Walpita;Ronak Patel;John J Macklin;Cornelia I Bargmann;Misha B Ahrens;Eric R Schreiter;Vivek Jayaraman;Loren L Looger;Karel Svoboda;Douglas S Kim;

10.1101/041780 — Neuroscience — Posted on 2016-02-29

8 Trait Heritability in Major Transitions

Matthew D Herron;William C Ratcliff;

10.1101/041830 — Evolutionary Biology — Posted on 2016-02-29

9 Metabolic profiling of alcohol consumption in 9778 young adults

Peter Würtz;Sarah Cook;Qin Wang;Mika Tiainen;Tuulia Tynkkynen;Antti J Kangas;Pasi Soininen;Jaana Laitinen;Jorma Viikari;Mika Kähönen;Terho Lehtimäki;Markus Perola;Stefan Blankenberg;Tanja Zeller;Satu Männistö;Veikko Salomaa;Marjo-Riitta Järvelin;Olli T Raitakari;Mika Ala-Korpela;David A Leon;

10.1101/041582 — Systems Biology — Posted on 2016-02-29

10 Approximate Bayesian bisulphite sequencing analysis

Owen J.L. Rackham;Sarah R. Langley;Thomas Oates;Eleni Vradi;Nathan Harmston;Prashant K. Srivastava;Jacques Behmoaras;Petros Dellaportas;Leonardo Bottolo;Enrico Petretto;

10.1101/041715 — Bioinformatics — Posted on 2016-02-29

11 The Software Crisis of Synthetic Biology

Sergi Valverde;Manuel Porcar;Juli Pereto;Ricard V. Sole;

10.1101/041640 — Systems Biology — Posted on 2016-02-29

12 A probability distribution over latent causes in the orbitofrontal cortex

Stephanie C.Y. Chan;Yael NIv;Kenneth A. Norman;

10.1101/041749 — Neuroscience — Posted on 2016-02-29

13 Regulating telomere length from the inside out: The replication fork model

Carol W Greider;

10.1101/041772 — Molecular Biology — Posted on 2016-02-29

14 Personalized Risk Prediction for Type 2 Diabetes: the Potential of Genetic Risk Scores

Kristi Lall;Reedik Magi;Andrew Morris;Andres Metspalu;Krista Fischer;

10.1101/041731 — Genetics — Posted on 2016-02-29

15 Cdk activity drives senescence from G2 phase

Erik Müllers;Helena Silva Cascales;Libor Macůrek;Arne Lindqvist;

10.1101/041723 — Cell Biology — Posted on 2016-02-29

16 Diffusion pseudotime robustly reconstructs lineage branching

Laleh Haghverdi;Maren Buettner;F. Alexander Wolf;Florian Buettner;Fabian J. Theis;

10.1101/041384 — Bioinformatics — Posted on 2016-02-29

17 Conformational dynamics of Tau in the cell quantified by an intramolecular FRET biosensor in physiological and pathological context

Cristina Di Primio;Valentina Quercioli;Giacomo Siano;Branislav Kovacech;Michal Novak;Antonino Cattaneo;

10.1101/041756 — Neuroscience — Posted on 2016-02-29

18 Sporulation, bacterial cell envelopes, and the origin of life

Elitza I Tocheva;Davi R Ortega;Grant J Jensen;

10.1101/041624 — Evolutionary Biology — Posted on 2016-02-29

19 Multiple genetic changes underlie the evolution of long-tailed forest deer mice

Evan P Kingsley;Krzysztof M Kozak;Susanne Pfeifer;Dou-Shuan Yang;Hopi E Hoekstra;

10.1101/041699 — Evolutionary Biology — Posted on 2016-02-29

20 A Dendritic Disinhibitory Circuit Mechanism for Pathway-Specific Gating

Guangyu R Yang;John D Murray;Xiao-Jing Wang;

10.1101/041673 — Neuroscience — Posted on 2016-02-28

21 Twenty five new viruses associated with the Drosophilidae (Diptera)

Claire L Webster;Ben Longdon;Samuel H Lewis;Darren J Obbard;

10.1101/041665 — Microbiology — Posted on 2016-02-28

22 Rational design and whole-genome predictions of single guide RNAs for efficient CRISPR/Cas9-mediated genome editing in Ciona

Shashank Gandhi;Lionel Christiaen;Alberto Stolfi;

10.1101/041632 — Developmental Biology — Posted on 2016-02-28

23 An alternative class of targets for microRNAs containing CG dinucleotide

Zheng Yan;Bin Zhang;Haiyang Hu;Yi-Ping Phoebe Chen;

10.1101/026708 — Bioinformatics — Posted on 2016-02-28

24 MECP2 regulates cortical plasticity underlying a learned behavior in adult female mice

Keerthi Krishnan;Billy Lau;Gabrielle Ewall;Z. Josh Huang;Stephen David Shea;

10.1101/041707 — Neuroscience — Posted on 2016-02-28

25 Species Identification by Bayesian Fingerprinting: A Powerful Alternative to DNA Barcoding

Ziheng Yang;Bruce Rannala;

10.1101/041608 — Evolutionary Biology — Posted on 2016-02-28

26 Genome-Wide Prediction of cis-Regulatory Regions Using Supervised Deep Learning Methods

Yifeng Li;Wenqiang Shi;Wyeth W Wasserman;

10.1101/041616 — Bioinformatics — Posted on 2016-02-28

27 Genomic prediction of coronary heart disease

Gad Abraham;Aki S Havulinna;Oneil G Bhalala;Sean G Byars;Alysha M de Livera;Laxman Yetukuri;Emmi Tikkanen;Markus Perola;Heribert Schunkert;Eric J Sijbrands;Aarno Palotie;Nilesh J Samani;Veikko Salomaa;Samuli Ripatti;Michael Inouye;

10.1101/041483 — Genomics — Posted on 2016-02-26

28 Structure, inhibition and regulation of two-pore channel TPC1 from Arabidopsis thaliana

Alexander F Kintzer;Robert M Stroud;

10.1101/041400 — Biophysics — Posted on 2016-02-26

29 Does the choice of nucleotide substitution models matter topologically?

Michael Hoff;Stefan Peter Orf;Benedikt Johannes Riehm;Diego Darriba;Alexandros Stamatakis;

10.1101/041566 — Bioinformatics — Posted on 2016-02-26

30 Contributions of hippocampus and striatum to memory-guided behavior depend on past experience

Janina D Ferbinteanu;

10.1101/041459 — Animal Behavior and Cognition — Posted on 2016-02-26

31 How domain growth is implemented determines the long term behaviour of a cell population through its effect on spatial correlations.

Robert JH Ross;Ruth E Baker;Christian A Yates;

10.1101/041509 — Systems Biology — Posted on 2016-02-26

32 The effect of domain growth on spatial correlations

Robert JH Ross;Christian A Yates;Ruth E Baker;

10.1101/041491 — Systems Biology — Posted on 2016-02-26

33 Cell fate-decision as high-dimensional critical state transition

Mitra Mojtahedi;Alexander Skupin;Joseph Zhou;Ivan G. Castano;Rebecca Y.Y. Leong-Quong;Hannah H. Chang;Alessandro Giuliani;Sui Huang;

10.1101/041541 — Systems Biology — Posted on 2016-02-27

34 Cell fate-decision as high-dimensional critical state transition

Mitra Mojtahedi;Alexander Skupin;Joseph Zhou;Ivan G. Castano;Rebecca Y.Y. Leong-Quong;Hannah H. Chang;Alessandro Giuliani;Sui Huang;

10.1101/041541 — Systems Biology — Posted on 2016-02-26

35 Learning In Spike Trains: Estimating Within-Session Changes In Firing Rate Using Weighted Interpolation

Greg Jensen;Fabian Munoz;Vincent P Ferrera;

10.1101/041301 — Neuroscience — Posted on 2016-02-26

36 Copy number variants in the sheep genome detected using multiple approaches

Gemma M Jenkins;Michael E Goddard;Mik Black;Rudiger Brauning;Benoit Auvray;Ken G Dodds;James Kijas;Noelle Cockett;John C McEwan;

10.1101/041475 — Genomics — Posted on 2016-02-26

37 Pollinator specialization imposes stronger evolutionary constraints on flower shape

Simon Joly;François Lambert;Hermine Alexandre;Étienne Léveillé-Bourret;John L. Clark;

10.1101/041533 — Evolutionary Biology — Posted on 2016-02-26

38 A watershed model of individual differences in fluid intelligence

Rogier A Kievit;Simon W Davis;John D Griffiths;Marta M Correia;Cam-CAN;Richard N A Henson;

10.1101/041368 — Neuroscience — Posted on 2016-02-26

39 Productive infection of field strains of avian coronavirus infectious bronchitis virus in chicken peripheral blood-derived monocyte

Yueting Zhang;Gary Whittaker;

10.1101/041558 — Microbiology — Posted on 2016-02-26

40 Recurrent selection explains parallel evolution of genomic regions of high relative but low absolute differentiation in greenish warblers

Darren E. Irwin;Miguel Alcaide;Kira E. Delmore;Jessica H. Irwin;Gregory L. Owens;

10.1101/041467 — Genomics — Posted on 2016-02-26

41 Generation of mutation hotspots in ageing bacterial colonies

Agnieszka Sekowska;Sofie Wendel;Morten Helge Hauberg Norholm;Antoine Danchin;

10.1101/041525 — Evolutionary Biology — Posted on 2016-02-26

42 The architecture of the human RNA-binding protein regulatory network

Erik Dassi;Paola Zuccotti;Daniele Peroni;Valentina Potrich;Alessandro Quattrone;

10.1101/041426 — Systems Biology — Posted on 2016-02-26

43 The Genetic Architecture of Quantitative Traits Cannot Be Inferred From Variance Component Analysis

Wen Huang;Trudy F.C. Mackay;

10.1101/041434 — Genetics — Posted on 2016-02-26

44 VcfR: an R package to manipulate and visualize VCF format data

Brian J Knaus;Niklaus J Grunwald;

10.1101/041277 — Bioinformatics — Posted on 2016-02-26

45 South Asia as a reservoir for the global spread of ciprofloxacin resistant Shigella sonnei

Hao Chung The;Maia A Rabaa;Duy Pham Thanh;Niall De Lappe;Martin Cormican;Benjamin P Howden;Sonam Wangchuk;Ladaporn Bodhidatta;Carl Jeffries;To Nguyen Thi Nguyen;Duong Vu Thuy;Corinne N Thompson;Nguyen Phu Huong Lan;Phat Voong Vinh;Tuyen Ha Thanh;Paul Turner;Poda Sar;Guy E Thwaites;Nicholas R Thompson;Kathryn E Holt;Stephen Baker;

10.1101/041327 — Microbiology — Posted on 2016-02-25

46 Horizontally transferred gene clusters in E. coli match size expectations from uber-operons

Tin Yau Pang;Martin Lercher;

10.1101/041418 — Genomics — Posted on 2016-02-25

47 Histone H1 limits DNA methylation in Neurospora crassa

Michael Seymour;Lexiang Ji;Alex M Santos;Masayuki Kamei;Takahiko Sasaki;Evelina Y Basenko;Robert J Schmitz;Xiaoyu Zhang;Zachary A Lewis;

10.1101/041285 — Genomics — Posted on 2016-02-25

48 Type 2 Diabetes Risk Prediction Incorporating Family History Revealing a Substantial Fraction of Missing Heritability

Jungsoo Gim;Wonji Kim;Soo Heon Kwak;Kyung Soo Park;Sungho Won;

10.1101/041335 — Genetics — Posted on 2016-02-25

49 The long-term sand crab study: phenology, geographic size variation, and a rare new colour morph in Lepidopa benedicti (Decapoda: Albuneidae)

Zen Faulkes;

10.1101/041376 — Ecology — Posted on 2016-02-25

50 A Powerful Procedure for Pathway-based Meta-Analysis Using Summary Statistics Identifies 43 Pathways Associated with Type II Diabetes in European Populations

Han Zhang;William Wheeler;Paula L Hyland;Yifan Yang;Jianxin Shi;Nilanjan Chatterjee;Kai Yu;

10.1101/041244 — Genetics — Posted on 2016-02-24

51 Modeling cumulative biological phenomena with Suppes-Bayes causal networks

DANIELE RAMAZZOTTI;Alex Graudenzi;Marco Antoniotti;

10.1101/041343 — Bioinformatics — Posted on 2016-02-25

52 Reassessment of Mendelian gene pathogenicity using 7,855 cardiomyopathy cases and 60,706 reference samples

Roddy Walsh;Kate Thomson;James S Ware;Birgit H Funke;Jessica Woodley;Karen J McGuire;Francesco Mazzarotto;Edward Blair;Anneke Seller;Jenny C Taylor;Eric V Minikel;Exome Aggregation Consortium;Daniel G MacArthur;Martin Farrall;Stuart A Cook;Hugh C Watkins;

10.1101/041111 — Genetics — Posted on 2016-02-24

53 NextflowWorkbench: Reproducible and Reusable Workflows for Beginners and Experts

Jason P Kurs;Manuele Simi;Fabien Campagne;

10.1101/041236 — Bioinformatics — Posted on 2016-02-24

54 Cortical feedback to V1 and V2 contains unique information about high-level scene structure.

Andrew T Morgan;Lucy S Petro;Lars Muckli;

10.1101/041186 — Neuroscience — Posted on 2016-02-24

55 Functional Genetic Screen to Identify Interneurons Governing Behaviorally Distinct Aspects of Drosophila Larval Motor Programs

Matt Clark;Chris Doe;Ellie Hackscher;Sereno Lopez;Stephanie McCumsey;

10.1101/041061 — Neuroscience — Posted on 2016-02-28

56 Functional Genetic Screen to Identify Interneurons Governing Behaviorally Distinct Aspects of Drosophila Larval Motor Programs

Matt Clark;Chris Doe;Ellie Hackscher;Sereno Lopez;Stephanie McCumsey;

10.1101/041061 — Neuroscience — Posted on 2016-02-24

57 The foraging brain: evidence of Levy dynamics in brain networks

Tommaso Costa;Giuseppe Boccignone;Franco Cauda;Mario Ferraro;

10.1101/041202 — Neuroscience — Posted on 2016-02-24

58 Cellular aspects of gonadal atrophy in P-M hybrid dysgenesis

Natalia Dorogova;Elena Bolobolova;Lyudmila Zakharenko;

10.1101/041178 — Developmental Biology — Posted on 2016-02-24

59 Focused Ultrasound Enhances Decision-Making in Monkeys

Matthew Downs;Amanda Buch;Maria Eleni Karakatsani;Tobias Teichert;Carlos Sierra;Shangshang Chen;Elisa E Konofagou;Vincent P Ferrera;

10.1101/041152 — Neuroscience — Posted on 2016-02-24

60 Inhibitory control of shared variability in cortical networks

Carsen Stringer;Marius Pachitariu;Michael Okun;Peter Bartho;Kenneth Harris;Peter Latham;Maneesh Sahani;Nicholas Lesica;

10.1101/041103 — Neuroscience — Posted on 2016-02-24

61 Inhibitory control of shared variability in cortical networks

Carsen Stringer;Marius Pachitariu;Michael Okun;Peter Bartho;Kenneth Harris;Peter Latham;Maneesh Sahani;Nicholas Lesica;

10.1101/041103 — Neuroscience — Posted on 2016-02-24

62 Inhibitory control of shared variability in cortical networks

Carsen Stringer;Marius Pachitariu;Michael Okun;Peter Bartho;Kenneth Harris;Peter Latham;Maneesh Sahani;Nicholas Lesica;

10.1101/041103 — Neuroscience — Posted on 2016-02-24

63 Predicting intensities of Zika infection and microcephaly using transmission intensities of other arboviruses

Isabel Rodriguez-Barraquer;Henrik Salje;Justin Lessler;Derek AT Cummings;

10.1101/041095 — Ecology — Posted on 2016-02-24

64 Effectors and potential targets selectively upregulated in human KRAS mutant lung adenocarcinomas

Jinyu Li;Raffaella Sordella;Scott Powers;

10.1101/041137 — Cancer Biology — Posted on 2016-02-29

65 Effectors and potential targets selectively upregulated in human KRAS mutant lung adenocarcinomas

Jinyu Li;Raffaella Sordella;Scott Powers;

10.1101/041137 — Cancer Biology — Posted on 2016-02-23

66 Natural selection driven by DNA binding proteins shapes genome-wide motif statistics

Long Qian;Edo Kussell;

10.1101/041145 — Evolutionary Biology — Posted on 2016-02-23

67 Ecological factors rather than barriers to dispersal shape genetic structure of algal symbionts in horizontally-transmitting corals

Sarah W. Davies;Drew Wham;Matthew R Kanke;Mikhail V Matz;

10.1101/037994 — Ecology — Posted on 2016-02-24

68 Ecological factors rather than barriers to dispersal shape genetic structure of algal symbionts in horizontally-transmitting corals

Sarah W. Davies;Drew Wham;Matthew R Kanke;Mikhail V Matz;

10.1101/037994 — Ecology — Posted on 2016-02-24

69 Ecological factors rather than barriers to dispersal shape genetic structure of algal symbionts in horizontally-transmitting corals

Sarah W. Davies;Drew Wham;Matthew R Kanke;Mikhail V Matz;

10.1101/037994 — Ecology — Posted on 2016-02-23

70 A contribution of novel CNVs to schizophrenia from a genome-wide study of 41,321 subjects

Christian Marshall;Daniel Howrigan;Daniele Merico;Bhooma Thiruvahindrapuram;Wenting Wu;Douglas Greer;Daniel Antaki;Aniket Shetty;Peter Holmans;Dalila Pinto;Madhusudan Gujral;William Brandler;Dheeraj Malholtra;Zhouzhi Wang;Karin Fuentes Fajarado;Stephan Ripke;Ingrid Agartz;Esben Agerbo;Margot Albus;Madeline Alexander;Farooq Amin;Joshua Atkins;Silviu Bacanu;Richard Belliveau;Sarah Bergen;Marcelo Bertalan;Elizabeth Bevilacqua;Tim Bigdeli;Donald Black;Richard Bruggeman;Nancy Buccola;Randy Buckner;Brendan Bulik-Sullivan;William Byerley;Wiepke Cahn;Guiqing Cai;Murray Cairns;Dominique Campion;Rita Ca

10.1101/040493 — Genetics — Posted on 2016-02-23

71 Pooled enrichment sequencing identifies diversity and evolutionary pressures at NLR resistance genes within a wild tomato population.

Remco Stam;Daniela Scheikl;Aurelien Tellier;

10.1101/040998 — Plant Biology — Posted on 2016-02-23

72 On the regulator of spike activity in cortical neurons under hypothermic conditions

Yulia S. Mednikova;Nadezda M. Zakharova;Natalia V. Pasikova;Inna V. Averina;

10.1101/041004 — Neuroscience — Posted on 2016-02-23

73 Extrusions promote engulfment and Chlamydia survival within macrophages

Meghan Zuck;Tisha C Ellis;Anthony Venida;Kevin Hybiske;

10.1101/041079 — Microbiology — Posted on 2016-02-23

74 Identification and qualification of 500 nuclear, single-copy, orthologous genes for the Eupulmonata (Gastropoda) using transcriptome sequencing and exon-capture

Luisa C Teasdale;Frank Koehler;Kevin D Murray;Tim O'Hara;Adnan Moussalli;

10.1101/035543 — Genomics — Posted on 2016-02-23

75 The role of isoforms in the evolution of cryptic coloration in Peromyscus mice

Ricardo Mallarino;Tess A Linden;Catherine R Linnen;Hopi E Hoekstra;

10.1101/041087 — Evolutionary Biology — Posted on 2016-02-23

76 Transcriptional pulsing of a nucleolar transgene

Viola Vankova Hausnerova;Pavel Krizek;Guy M. Hagen;Christian Lanctot;

10.1101/040956 — Cell Biology — Posted on 2016-02-23

77 Exploitation by cheaters facilitates the preservation of essential public goods in microbial communities

Clara Moreno-Fenoll;Matteo Cavaliere;Esteban Martinez-Garcia;Juan F Poyatos;

10.1101/040964 — Systems Biology — Posted on 2016-02-23

78 Genetic redundancies enhance information transfer in noisy regulatory circuits

Guillermo Rodrigo;Juan F Poyatos;

10.1101/040931 — Systems Biology — Posted on 2016-02-23

79 Characterization and Transposon Mutagenesis of the Maize (Zea mays) Pho1 Gene Family

Nancy Salazar-Vidal;Edith Acosta-Segovia;Nidia Sanchez-Leon;Kevin R Ahern;Thomas P Brutnell;Ruairidh J H Sawers;

10.1101/040899 — Plant Biology — Posted on 2016-02-23

80 Bayesian Inference of the Evolution of a Phenotype Distribution on a Phylogenetic Tree

M Azim Ansari;Xavier Didelot;

10.1101/040980 — Evolutionary Biology — Posted on 2016-02-23

81 Eco-evolutionary buffering: rapid evolution facilitates regional coexistence of species engaged in local priority effects

Meike J. Wittmann;Tadashi Fukami;

10.1101/040659 — Ecology — Posted on 2016-02-23

82 foxc1a genetically interacts with ripply1 to regulate mesp-ba expression and somitogenesis in the zebrafish embryo

Rotem Lavy;W. Ted Allison;Fred B Berry;

10.1101/041012 — Developmental Biology — Posted on 2016-02-24

83 foxc1a genetically interacts with ripply1 to regulate mesp-ba expression and somitogenesis in the zebrafish embryo

Rotem Lavy;W. Ted Allison;Fred B Berry;

10.1101/041012 — Developmental Biology — Posted on 2016-02-23

84 Multiscale simulations reveal key features of the proton pumping mechanism in cytochrome c oxidase

Ruibin Liang;Jessica M J Swanson;Yuxing Peng;Marten Wikstrom;Gregory Voth;

10.1101/040717 — Biophysics — Posted on 2016-02-24

85 Multiscale simulations reveal key features of the proton pumping mechanism in cytochrome c oxidase

Ruibin Liang;Jessica M J Swanson;Yuxing Peng;Marten Wikstrom;Gregory Voth;

10.1101/040717 — Biophysics — Posted on 2016-02-24

86 Multiscale simulations reveal key features of the proton pumping mechanism in cytochrome c oxidase

Ruibin Liang;Jessica M J Swanson;Yuxing Peng;Marten Wikstrom;Gregory Voth;

10.1101/040717 — Biophysics — Posted on 2016-02-23

87 Atomic structure of Hsp90:Cdc37:Cdk4 reveals Hsp90 regulates kinase via dramatic unfolding

Kliment A Verba;Ray YR Wang;Akihiko Arakawa;Yanxin Liu;Mikako Shirouzu;Shigeyuki Yokoyama;David A Agard;

10.1101/040907 — Biochemistry — Posted on 2016-02-25

88 Atomic structure of Hsp90:Cdc37:Cdk4 reveals Hsp90 regulates kinase via dramatic unfolding

Kliment A Verba;Ray YR Wang;Akihiko Arakawa;Yanxin Liu;Mikako Shirouzu;Shigeyuki Yokoyama;David A Agard;

10.1101/040907 — Biochemistry — Posted on 2016-02-23

89 Coarse-grained simulation reveals key features of HIV-1 capsid self-assembly

John M A Grime;James F Dama;Barbie K Ganser-Pornillos;Cora L Woodward;Grant J Jensen;Mark J Yeager;Gregory Voth;

10.1101/040741 — Biochemistry — Posted on 2016-02-23

90 A new advanced backcross tomato population enables high resolution leaf QTL mapping and gene identification

Daniel Fulop;Aashish Ranjan;Itai Ofner;Michael F. Covington;Daniel H. Chitwood;Donnelly West;Yasunori Ichihashi;Lauren Headland;Daniel Zamir;Julin N. Maloof;Neelima R. Sinha;

10.1101/040923 — Plant Biology — Posted on 2016-02-23

91 Interplay between copy number, dosage compensation and expression noise in Drosophila

Dong-Yeon Cho;Hangnoh Lee;Damian Wojtowicz;Steven Russell;Brian Oliver;Teresa M Przytycka;

10.1101/041038 — Genomics — Posted on 2016-02-23

92 Accurate promoter and enhancer identification in 127 ENCODE and Roadmap Epigenomics cell types and tissues by GenoSTAN

Benedikt Zacher;Margaux Michel;Bjoern Schwalb;Patrick Cramer;Achim Tresch;Julien Gagneur;

10.1101/041020 — Genomics — Posted on 2016-02-24

93 Accurate promoter and enhancer identification in 127 ENCODE and Roadmap Epigenomics cell types and tissues by GenoSTAN

Benedikt Zacher;Margaux Michel;Bjoern Schwalb;Patrick Cramer;Achim Tresch;Julien Gagneur;

10.1101/041020 — Genomics — Posted on 2016-02-23

94 Bayesian analysis of normal mouse cell lineage trees allowing intra-individual, cell population specific mutation rates

Attila Csordas;Remco Bouckaert;

10.1101/040733 — Developmental Biology — Posted on 2016-02-22

95 AC-PCA: simultaneous dimension reduction and adjustment for confounding variation

Zhixiang Lin;Can Yang;Ying Zhu;John C. Duchi;Yao Fu;Yong Wang;Bai Jiang;Mahdi Zamanighomi;Xuming Xu;Mingfeng Li;Nenad Sestan;Hongyu Zhao;Wing Hung Wong;

10.1101/040485 — Bioinformatics — Posted on 2016-02-22

96 BuddySuite: Command-line toolkits for manipulating sequences, alignments, and phylogenetic trees

Stephen R Bond;Karl E Keat;Andreas D Baxevanis;

10.1101/040675 — Bioinformatics — Posted on 2016-02-22

97 eQTL regulating Transcript Levels Associated with Diverse Biological Processes in Tomato

Aashish Ranjan;Jessica M Budke;Steven D Rowland;Daniel H Chitwood;Ravi Kumar;Leonela Carriedo;Yasunori Ichihashi;Kristina Zumstein;Julin N Maloof;Neelima R Sinha;

10.1101/040592 — Genomics — Posted on 2016-02-22

98 Integrating genomics into clinical pediatric oncology using the molecular tumor board at the Memorial Sloan Kettering Cancer Center

Michael V. Ortiz;Rachel Kobos;Michael Walsh;Emily K. Slotkin;Stephen Roberts;Michael F. Berger;Meera Hameed;David Solit;Marc Ladanyi;Neerav Shukla;Alex Kentsis;

10.1101/040584 — Genomics — Posted on 2016-02-22

99 Genome-culture coevolution promotes rapid divergence in the killer whale

Andrew Foote;Nagarjun Vijay;Maria Avila-Arcos;Robin Baird;John Durban;Phillip Morin;Matteo Fumagalli;Richard Gibbs;Bradley Hanson;Thorfinn Korneliussen;Michael Martin;Kelly Robertson;Vitor Sousa;Filipe Vieira;Tomas Vinar;Paul Wade;Kim Worley;Laurent Excoffier;Thomas Gilbert;Jochen Wolf;

10.1101/040295 — Genomics — Posted on 2016-02-22

100 Explaining Missing Heritability Using Gaussian Process Regression

Kevin Sharp;Wim Wiegerinck;Alejandro Arias-Vasquez;Barbara Franke;Jonathan Marchini;Cornelis A Albers;Hilbert J Kappen;

10.1101/040576 — Genetics — Posted on 2016-02-22

101 Experimental evolution of Escherichia coli harboring an ancient translation protein

Betul Kacar;Xueliang Ge;Suparna Sanyal;Eric A. Gaucher;

10.1101/040626 — Evolutionary Biology — Posted on 2016-02-22

102 Analytical results for directional and quadratic selection gradients for log-linear models of fitness functions

Michael Morrissey;Ian B. J. Goudie;

10.1101/040618 — Evolutionary Biology — Posted on 2016-02-22

103 The molecular chaperone DnaK accelerates protein evolution

Jose Aguilar-Rodriguez;Beatriz Sabater-Munoz;Victor Berlanga;David Alvarez-Ponce;Andreas Wagner;Mario A. Fares;

10.1101/040600 — Evolutionary Biology — Posted on 2016-02-22

104 CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs

David J Arenillas;Alistair R.R. Forrest;Hideya Kawaji;Timo Lassman;The FANTOM Consortium;Wyeth W. Wasserman;Anthony Mathelier;

10.1101/040667 — Bioinformatics — Posted on 2016-02-22

105 Boiler: Lossy compression of RNA-seq alignments using coverage vectors

Jacob Pritt;Ben Langmead;

10.1101/040634 — Bioinformatics — Posted on 2016-02-22

106 PARAQUAT TOLERANCE3 is an E3 ligase and acts as a negative regulator of oxidative stress response

Chao Luo;Xiaoteng Cai;Jin Du;Tao-Lan Zhao;Peng-Fei Wang;Ping-Xia Zhao;Rui Liu;Qi Xie;Xiaofeng Cao;Chengbin Xiang;

10.1101/040543 — Plant Biology — Posted on 2016-02-22

107 The non-essentiality of essential genes suggests a loss-of-function therapeutic strategy for loss-of-function human diseases

Piaopiao Chen;Dandan Wang;Han Chen;Zhenzhen Zhou;Xionglei He;

10.1101/040568 — Genetics — Posted on 2016-02-22

108 Declaring a tuberculosis outbreak over with genomic epidemiology

Hollie-Ann Hatherell;Xavier Didelot;Sue L Pollock;Patrick Tang;Anamaria Crisan;James C. Johnston;Caroline Colijn;Jennifer Gardy;

10.1101/040527 — Genomics — Posted on 2016-02-22

109 Microarray analysis identifies malignant field signatures in biopsy samples at diagnosis predicting the likelihood of lethal disease in patients with localized Gleason 6 and 7 prostate cancer.

Gennadi Glinsky;

10.1101/040519 — Genomics — Posted on 2016-02-21

110 Arabidopsis ATHB17 coordinates nuclear and plastidic photosynthesis gene expression in response to abiotic stress

Ping Zhao;Rong Cui;Ping Xu;Jieli Mao;Yu Chen;Congzhao Zhou;Linhui Yu;Chengbin Xiang;

10.1101/040501 — Plant Biology — Posted on 2016-02-21

111 Evolution of HIV virulence in response to widespread scale up of antiretroviral therapy: a modeling study

Joshua Herbeck;John Mittler;Geoffrey Gottlieb;Steve Goodreau;James Murphy;Anne Cori;Michael Pickles;Christophe Fraser;

10.1101/039560 — Evolutionary Biology — Posted on 2016-02-21

112 Evolution of HIV virulence in response to widespread scale up of antiretroviral therapy: a modeling study

Joshua Herbeck;John Mittler;Geoffrey Gottlieb;Steve Goodreau;James Murphy;Anne Cori;Michael Pickles;Christophe Fraser;

10.1101/039560 — Evolutionary Biology — Posted on 2016-02-21

113 In-silico analysis of MHC genes in hereditary colorectal cancer shows identical by state SNP sharing affecting HLA-DQB1 binding groove

Mahmoud Koko;Suleiman Hussein Suleiman;Mohammed Omar Elsiddieg Abdallah;Muhallab Saad;Muntaser Ibrahim;

10.1101/040436 — Cancer Biology — Posted on 2016-02-21

114 Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform

Po-E Li;Chien-Chi Lo;Joseph J. Anderson;Karen W. Davenport;Kimberly A. Bishop-Lilly;Yan Xu;Sanaa Ahmed;Shihai Feng;Vishwesh P. Mokashi;Patrick S. G. Chain;

10.1101/040477 — Bioinformatics — Posted on 2016-02-21

115 Identifying Network Perturbation in Cancer

Maxim Grechkin;Benjamin A Logsdon;Andrew J Gentles;Su-In Lee;

10.1101/040394 — Genomics — Posted on 2016-02-21

116 An ecological assessment of the pandemic threat of Zika virus

Colin Carlson;Eric Dougherty;Wayne Getz;

10.1101/040386 — Ecology — Posted on 2016-02-19

117 Single-chromosome aneuploidy commonly functions as a tumor suppressor

Jason Meyer Sheltzer;Julie H. Ko;Nicole C. Habibe Burgos;Erica S. Chung;Colleen M. Meehl;Verena Passerini;Zuzana Storchova;Angelika Amon;

10.1101/040162 — Cancer Biology — Posted on 2016-02-19

118 CRISPR-directed mitotic recombination enables genetic mapping without crosses

Meru J Sadhu;Joshua S Bloom;Laura Day;Leonid Kruglyak;

10.1101/040428 — Genetics — Posted on 2016-02-19

119 Metaproteomics reveals biomarkers of system collapse in a dynamic aquatic ecosystem

Amanda C. Northrop;Rachel Brooks;Aaron M. Ellison;Nicholas J. Gotelli;Bryan A. Ballif;

10.1101/040402 — Ecology — Posted on 2016-02-19

120 Kronos: a workflow assembler for genome analytics and informatics

M Jafar Taghiyar;Jamie Rosner;Diljot Grewal;Bruno Grande;Radhouane Aniba;Jasleen Grewal;Paul C Boutros;Ryan D Morin;Ali Bashashati;Sohrab P Shah;

10.1101/040352 — Bioinformatics — Posted on 2016-02-22

121 Kronos: a workflow assembler for genome analytics and informatics

M Jafar Taghiyar;Jamie Rosner;Diljot Grewal;Bruno Grande;Radhouane Aniba;Jasleen Grewal;Paul C Boutros;Ryan D Morin;Ali Bashashati;Sohrab P Shah;

10.1101/040352 — Bioinformatics — Posted on 2016-02-19

122 Distinct stages in the recognition, sorting and packaging of proTGFα into COPII coated transport vesicles

Pengcheng Zhang;Randy Schekman;

10.1101/040410 — Cell Biology — Posted on 2016-02-19

123 A universal model for carbon dioxide uptake by plants

Han Wang;Iain Colin Prentice;William Cornwell;Trevor Keenan;Tyler Davis;Ian Wright;Bradley Evans;Changhui Peng;

10.1101/040246 — Ecology — Posted on 2016-02-19

124 Evaluation of Techniques for Performing Cellular Isolation and Preservation during Microgravity Conditions

Lindsay F Rizzardi;Hawley Kunz;Kathleen Rubins;Alexander Chouker;Heather Quiriarte;Clarence Sams;Brian Crucian;Andrew P Feinberg;

10.1101/040014 — Scientific Communication and Education — Posted on 2016-02-19

125 ZIKA - How Fast Does This Virus Mutate ?

Ian S Logan;

10.1101/040303 — Genetics — Posted on 2016-02-19

126 Micro- and macroevolutionary trade-offs in plant-feeding insects

Daniel Peterson;Nate B. Hardy;Benjamin B. Normark;

10.1101/040311 — Evolutionary Biology — Posted on 2016-02-19

127 Do persistent rare species experience stronger negative frequency dependence than common species?

Glenda Yenni;Peter Adler;Morgan Ernest;

10.1101/040360 — Ecology — Posted on 2016-02-19

128 The case for a dynamical subsurface ecosystem

Cara Magnabosco;Peer H.A. Timmers;Maggie C.Y. Lau;Gaetan Borgonie;Borja Linage-Alvarez;Olukayode Kuloyo;Rose Alleva;Thomas L. Kieft;Greg S. Slater;Esta van Heerden;Barbara Sherwood Lollar;Tullis C. Onstott;

10.1101/040204 — Ecology — Posted on 2016-02-19

129 Comparative assessment of fluorescent proteins for in vivo imaging in an animal model system

Jennifer K Heppert;Daniel J Dickinson;Ariel M Pani;Christopher D Higgins;Annette Steward;Julie Ahringer;Jeffrey R Kuhn;Bob Goldstein;

10.1101/040279 — Cell Biology — Posted on 2016-02-19

130 MetaCycle: an integrated R package to evaluate periodicity in large scale data

Gang Wu;Ron C Anafi;Michael E Hughes;Karl Kornacker;John B Hogenesch;

10.1101/040345 — Bioinformatics — Posted on 2016-02-19

131 variancePartition: Interpreting drivers of variation in complex gene expression studies

Gabriel E Hoffman;Eric E Schadt;

10.1101/040170 — Bioinformatics — Posted on 2016-02-19

132 StrainSeeker: fast identification of bacterial strains from unassembled sequencing reads using user-provided guide trees.

Mart Roosaare;Mihkel Vaher;Lauris Kaplinski;Mart Mols;Reidar Andreson;Maarja Lepamets;Triinu Koressaar;Paul Naaber;Siiri Koljalg;Maido Remm;

10.1101/040261 — Bioinformatics — Posted on 2016-02-19

133 Rigidity of silicone substrates controls cell spreading and stem cell differentiation

Grigory Vertelov;Edgar Gutierrez;Sin-Ae Lee;Edward Ronan;Alex Groisman;Eugene Tkachenko;

10.1101/040048 — Cell Biology — Posted on 2016-02-19

134 C. elegans paraoxonase-like proteins control the functional expression of DEG/ENaC mechanosensory proteins

Yushu Chen;Shashank Bharill;Zeynep Altun;Robert O'Hagan;Brian Coblitz;Ehud I. Isacoff;Martin Chalfie;

10.1101/040337 — Cell Biology — Posted on 2016-02-19

135 High-resolution maps of hunter-gatherer social networks reveal human adaptation for cultural exchange

Andrea Bamberg Migliano;Abigail Page;Jesus Gomez-Gardenes;Sylvain Viguier;Mark Dyble;James Thompson;Nikhill Chaudhary;Gul Deniz Salali;Daniel Smith;Janis Strods;Vito Latora;Ruth Mace;Lucio Vinicius;

10.1101/040154 — Evolutionary Biology — Posted on 2016-02-19

136 Sentinel versus passive surveillance for measuring changes in dengue incidence: Evidence from three concurrent surveillance systems in Iquitos, Peru

Sandra Olkowski;Steven T. Stoddard;Eric S. Halsey;Amy C. Morrisson;Christopher M. Barker;Thomas W. Scott;

10.1101/040220 — Ecology — Posted on 2016-02-19

137 Reconstruction of ancestral genomes in presence of gene gain and loss.

Pavel Avdeyev;Shuai Jiang;Sergey Aganezov;Fei Hu;Max A. Alekseyev;

10.1101/040196 — Bioinformatics — Posted on 2016-02-19

138 Y-box protein 1 is required to sort microRNAs into exosomes in cells and in a cell-free reaction

Matthew Shurtleff;Kate V. Karfilis;Morayma Temoche-Diaz;Sayaka Ri;Randy Schekman;

10.1101/040238 — Biochemistry — Posted on 2016-02-19

139 Conserved gene clusters in the scrambled plastomes of IRLC legumes (Fabaceae: Trifolieae and Fabeae).

Saemundur Sveinsson;Quentin Cronk;

10.1101/040188 — Evolutionary Biology — Posted on 2016-02-18

140 Non-homologous DNA increases gene disruption efficiency by altering DNA repair outcomes

Christopher D Richardson;Grahm J Ray;Jacob E Corn;

10.1101/040212 — Cell Biology — Posted on 2016-02-18

141 Selective maintenance mechanisms of seen and unseen sensory features in the human brain

Jean-Remi KING;Niccolo Pescetelli;Stanislas Dehaene;

10.1101/040030 — Neuroscience — Posted on 2016-02-18

142 Plant diversity accurately predicts insect diversity in two tropical landscapes

Kai Zhang;Siliang Lin;Yinqiu Ji;Chenxue Yang;Xiaoyang Wang;Chunyan Yang;H. Wang;Haisheng Jiang;Rhett Harrison;Douglas W. Yu;

10.1101/040105 — Ecology — Posted on 2016-02-18

143 A Family of Interaction-Adjusted Indices of Community Similarity

Thomas Sebastian Benedikt Schmidt;Joao Frederico Matias Rodrigues;Christian von Mering;

10.1101/040097 — Ecology — Posted on 2016-02-18

144 Bimodal occupancy-frequency distributions uncover the importance of regional dynamics in shaping marine microbial biogeography

Markus V Lindh;Johanna Sjostedt;Borje Ekstam;Michele Casini;Daniel Lundin;Luisa W Hugerth;Yue O. O. Hu;Anders F Andersson;Agneta Andersson;Catherine Legrand;Jarone Pinhassi;

10.1101/039883 — Ecology — Posted on 2016-02-18

145 Combating Chagas Disease Through Inhibition of Tiam1, a Rho GTPase Guanine Nucleotide Exchange Factor

Chirag Krishna;Li Xie;Philip Bourne;Celine DerMarderossian;

10.1101/040121 — Bioinformatics — Posted on 2016-02-18

146 Working with Zika and Usutu Viruses in Vitro

Kelli Barr;Benjamin Anderson;Maureen Long;

10.1101/040139 — Microbiology — Posted on 2016-02-18

147 Targeted Deletion of Vitamin D receptor Gene in Mammalian Cells by CRISPR/Cas9 Systems

Tao zhang;Ling Wang;Kun Xu;Chonghua Ren;Zhongtian Liu;Zhiying Zhang;

10.1101/040147 — Genomics — Posted on 2016-02-18

148 SNP-based heritability estimation: measurement noise, population stratification and stability

Eric R Gamazon;Danny S Park;

10.1101/040055 — Genomics — Posted on 2016-02-23

149 SNP-based heritability estimation: measurement noise, population stratification and stability

Eric R Gamazon;Danny S Park;

10.1101/040055 — Genomics — Posted on 2016-02-21

150 SNP-based heritability estimation: measurement noise, population stratification and stability

Eric R Gamazon;Danny S Park;

10.1101/040055 — Genomics — Posted on 2016-02-18

151 Shared molecular neuropathology across major psychiatric disorders parallels polygenic overlap

Michael J Gandal;Jillian Haney;Neelroop Parikshak;Virpi Leppa;Steve Horvath;Dan H Geschwind;

10.1101/040022 — Genomics — Posted on 2016-02-18

152 Exploiting single-cell quantitative data to map genetic variants having probabilistic effects

Florent Chuffart;Magali Richard;Daniel Jost;Helene Duplus-Bottin;Yoshikazu Ohya;Gael Yvert;

10.1101/040113 — Genetics — Posted on 2016-02-18

153 Succinct Colored de Bruijn Graphs

Keith Belk;Christina Boucher;Alexander Bowe;Travis Gagie;Paul Morley;Martin D Muggli;Noelle R Noyes;Simon J Puglisi;Rober Raymond;

10.1101/040071 — Bioinformatics — Posted on 2016-02-18

154 Semi-Supervised Learning of the Electronic Health Record for Phenotype Stratification

Brett K Beaulieu-Jones;Casey S Greene;

10.1101/039800 — Bioinformatics — Posted on 2016-02-18

155 Inducible colistin resistance via a disrupted plasmid-borne mcr-1 gene in a 2008 Vietnamese Shigella sonnei isolate

Duy Pham Thanh;Ha Thanh Tuyen;To Nguyen Thi Nguyen;Hao Chung The;Ryan R Wick;Guy Thwaites;Stephen Baker;Kathryn E Holt;

10.1101/039925 — Microbiology — Posted on 2016-02-18

156 Local joint testing improves power and identifies missing heritability in association studies

Brielin C Brown;Alkes Price;Nikolaos Patsopoulos;Noah Zaitlen;

10.1101/040089 — Genetics — Posted on 2016-02-18

157 A fractional order network model for ZIKA

H. Elsaka;E. Ahmed;

10.1101/039917 — Ecology — Posted on 2016-02-18

158 Tunable bet hedging in yeast responses to osmotic stress

Yoshikazu Hirate;Samuel Bottani;Wyming Lee Pang;Suzannah Rutherford;

10.1101/039982 — Evolutionary Biology — Posted on 2016-02-18

159 A Central Limit Theorem for Punctuated Equilibrium

Krzysztof Bartoszek;

10.1101/039867 — Evolutionary Biology — Posted on 2016-02-18

160 Into the tropics: phylogenomics and evolutionary dynamics of a contrarian clade of ants

Michael G. Branstetter;John T. Longino;Joaquín Reyes-López;Ted R. Schultz;Seán G. Brady;

10.1101/039966 — Evolutionary Biology — Posted on 2016-02-18

161 Aging shapes the population-mean and -dispersion of gene expression in human brains

Candice L Brinkmeyer-Langford;Jinting Guan;Guoli Ji;James J Cai;

10.1101/039933 — Genetics — Posted on 2016-02-20

162 Aging shapes the population-mean and -dispersion of gene expression in human brains

Candice L Brinkmeyer-Langford;Jinting Guan;Guoli Ji;James J Cai;

10.1101/039933 — Genetics — Posted on 2016-02-17

163 CELL SEGMENTATION WITH RANDOM FERNS AND GRAPH-CUTS

Arnaud Browet;Christophe De Vleeschouwer;Laurent Jacques;Navrita Mathiah;Bechara Saykali;Isabelle Migeotte;

10.1101/039958 — Cell Biology — Posted on 2016-02-17

164 16S rRNA amplicon sequencing for epidemiological surveys of bacteria in wildlife: the importance of cleaning post-sequencing data before estimating positivity, prevalence and co-infection

Maxime Galan;Maria Razzauti;Emilie Bard;Maria Bernard;Carine Brouat;Nathalie Charbonnel;Alexandre Dehne-Garcia;Anne Loiseau;Caroline Tatard;Lucie Tamisier;Muriel Vayssier-Taussat;Helene Vignes;Jean Francois Cosson;

10.1101/039826 — Microbiology — Posted on 2016-02-27

165 16S rRNA amplicon sequencing for epidemiological surveys of bacteria in wildlife: the importance of cleaning post-sequencing data before estimating positivity, prevalence and co-infection

10.1101/039826 — Microbiology — Posted on 2016-02-26

166 16S rRNA amplicon sequencing for epidemiological surveys of bacteria in wildlife: the importance of cleaning post-sequencing data before estimating positivity, prevalence and co-infection

10.1101/039826 — Microbiology — Posted on 2016-02-17

167 MetaPalette: A K-mer painting approach for metagenomic taxonomic profiling and quantification of novel strain variation

David Koslicki;Daniel Falush;

10.1101/039909 — Bioinformatics — Posted on 2016-02-17

168 Assessing the relationship between height growth and molecular genetic variation in Douglas-fir (Pseudotsuga menziesii) provenances

Charalambos Neophytou;Anna-Maria Weisser;Daniel Landwehr;Muhidin Šeho;Ulrich Kohnle;Ingo Ensminger;Henning Wildhagen;

10.1101/039818 — Plant Biology — Posted on 2016-02-17

169 Osteosarcoma with apparent Ewing sarcoma gene rearrangement

Melissa Mathias;Alexander Chou;Paul Meyers;Neerav Shukla;Meera Hameed;Narasimhan Agaram;Lulu Wang;Michael Berger;Michael Walsh;Alex Kentsis;

10.1101/039834 — Molecular Biology — Posted on 2016-02-18

170 Osteosarcoma with apparent Ewing sarcoma gene rearrangement

Melissa Mathias;Alexander Chou;Paul Meyers;Neerav Shukla;Meera Hameed;Narasimhan Agaram;Lulu Wang;Michael Berger;Michael Walsh;Alex Kentsis;

10.1101/039834 — Molecular Biology — Posted on 2016-02-17

171 Transhydrogenase and growth substrate influence lipid hydrogen isotope ratios in Desulfovibrio alaskensis G20

William D. Leavitt;Theodore M Flynn;Melanie K Suess;Alexander S Bradley;

10.1101/039792 — Microbiology — Posted on 2016-02-17

172 Validation of a habitat suitability index for oyster restoration

Seth Theuerkauf;Romuald Lipcius;

10.1101/039875 — Ecology — Posted on 2016-02-17

173 Tetraeffective causes, mortacauses, and vitacauses of mortality and survivorship

Michael Epelbaum;

10.1101/039438 — Ecology — Posted on 2016-02-25

174 Tetraeffective causes, mortacauses, and vitacauses of mortality and survivorship

Michael Epelbaum;

10.1101/039438 — Ecology — Posted on 2016-02-24

175 Tetraeffective causes, mortacauses, and vitacauses of mortality and survivorship

Michael Epelbaum;

10.1101/039438 — Ecology — Posted on 2016-02-19

176 Tetraeffective causes, mortacauses, and vitacauses of mortality and survivorship

Michael Epelbaum;

10.1101/039438 — Ecology — Posted on 2016-02-17

177 DNA Methylation profiles of diverse Brachypodium distachyon aligns with underlying genetic diversity

Steven R Eichten;Tim Stuart;Akanksha Srivastava;Ryan Lister;Justin O Borevitz;

10.1101/039602 — Genomics — Posted on 2016-02-17

178 A tradeoff between the ecological and evolutionary stabilities of public goods genes in microbial populations

Joseph Rauch;Jané Kondev;Alvaro Sanchez;

10.1101/039784 — Evolutionary Biology — Posted on 2016-02-15

179 Contents of Consciousness Investigated as Integrated Information in Direct Human Brain Recordings

Andrew M. Haun;Masafumi Oizumi;Christopher K Kovach;Hiroto Kawasaki;Hiroyuki Oya;Matthew A Howard;Ralph Adolphs;Naotsugu Tsuchiya;

10.1101/039032 — Neuroscience — Posted on 2016-02-15

180 Genome-wide histone modification patterns in Kluyveromyces Lactis reveal evolutionary adaptation of a heterochromatin-associated mark

Angela Bean;Assaf Weiner;Amanda Hughes;Eyal Itskovits;Nir Friedman;Oliver Rando;

10.1101/039776 — Genomics — Posted on 2016-02-15

181 Two-Dimensional NMR Lineshape Analysis

Christopher Andrew Waudby;Andres Ramos;Lisa D Cabrita;John Christodoulou;

10.1101/039735 — Biochemistry — Posted on 2016-02-15

182 Context-specificity in causal signaling networks revealed by phosphoprotein profiling

Steven M. Hill;Nicole K. Nesser;Katie Johnson-Camacho;Mara Jeffress;Aimee Johnson;Chris Boniface;Simon E.F. Spencer;Yiling Lu;Laura M. Heiser;Yancey Lawrence;Nupur T. Pande;James E. Korkola;Joe W. Gray;Gordon B. Mills;Sach Mukherjee;Paul T. Spellman;

10.1101/039636 — Systems Biology — Posted on 2016-02-15

183 The hidden complexity of Mendelian traits across yeast natural populations

Jing Hou;Anastasie Sigwalt;David Pflieger;Jackson Peter;Jacky de Montigny;Maitreya Dunham;Joseph Schacherer;

10.1101/039693 — Genomics — Posted on 2016-02-15

184 Craniofacial shape transition across the house mouse hybrid zone: implications for the genetic architecture and evolution of between-species differences

Luisa F Pallares;Leslie M Turner;Diethard Tautz;

10.1101/039743 — Evolutionary Biology — Posted on 2016-02-15

185 The infinitesimal model

Nick H Barton;Alison M Etheridge;Amandine Véber;

10.1101/039768 — Evolutionary Biology — Posted on 2016-02-15

186 annotatr: Associating genomic regions with genomic annotations

Raymond G Cavalcante;Maureen A Sartor;

10.1101/039685 — Bioinformatics — Posted on 2016-02-15

187 Infection avoidance behaviour: female fruit flies adjust foraging effort in response to internal and external cues of viral infection

Pedro F Vale;Michael D Jardine;

10.1101/039750 — Animal Behavior and Cognition — Posted on 2016-02-15

188 Triclosan Exposure is Associated with Rapid Restructuring of the Microbiome in Adult Zebrafish

Christopher A Gaulke;Carrie L Barton;Sarah Proffitt;Robert L Tanguay;Thomas J Sharpton;

10.1101/039669 — Microbiology — Posted on 2016-02-14

189 Response to Commentary on "Limitations of GCTA as a solution to the missing heritability problem"

Siddharth Krishna Kumar;Marcus W Feldman;David H Rehkopf;Shripad Tuljapurkar;

10.1101/039594 — Genomics — Posted on 2016-02-17

190 Response to Commentary on "Limitations of GCTA as a solution to the missing heritability problem"

Siddharth Krishna Kumar;Marcus W Feldman;David H Rehkopf;Shripad Tuljapurkar;

10.1101/039594 — Genomics — Posted on 2016-02-13

191 The Next Generation Precision Medical Record - A Framework for Integrating Genomes and Wearable Sensors with Medical Records