bioRxiv directory

Chen, L.-C.; Hsieh, Y.-L.; Kuo, T.-Y.; Chou, Y.-C.; Hsu, P.-H.; Hwang-Verslues, W. W.

10.1101/789222 — molecular biology — Posted on 2019-10-31

3 Previously undetected super-spreading of Mycobacterium tuberculosis revealed by deep sequencing

Lee, R. S.; Proulx, J.-F.; McIntosh, F.; Behr, M. A.; Hanage, B.

10.1101/801308 — genomics — Posted on 2019-10-31

4 The reliability and heritability of cortical folds and their genetic correlations across hemispheres.

Pizzagalli, F.; Auzias, G.; Yang, Q.; Mathias, S. R.; Faskowitz, J.; Boyd, J.; Amini, A.; Riviere, D.; McMahon, K. L.; de Zubicaray, G. I.; Martin, N. G.; Mangin, J.-F.; Glahn, D. C.; Blangero, J.; Wright, M. J.; Thompson, P. M.; Kochunov, P.; Jahanshad, N.

10.1101/795591 — genetics — Posted on 2019-10-31

5 Synergism of gut microbiota to double-stranded RNAs in RNA interference of a leaf beetle

Xu, L.; Xu, S.; Sun, L.; Zhang, Y.; Jing, L.; Bock, R.; Zhang, J.

10.1101/824581 — ecology — Posted on 2019-10-31

6 Systematic variation in marine dissolved organic matter stoichiometry and remineralization ratios as a function of lability

Zakem, E.; Levine, N.

10.1101/710178 — ecology — Posted on 2019-10-31

7 Kia kaua te reo e rite ki te moa, ka ngaro: Do not let the language suffer the same fate as the moa

Barrett-Walker, T.; Plank, M. J.; Ka'ai-Mahuta, R.; Hikuroa, D.; James, A.

10.1101/817148 — ecology — Posted on 2019-10-31

8 CLIC4 is a cytokinetic cleavage furrow protein that regulates cortical cytoskeleton stability during cell division

Peterman, E.; Valius, M.; Prekeris, R.

10.1101/723940 — cell biology — Posted on 2019-10-31

9 Assessment of the bovine uterus with endometritis using Doppler ultrasound

Gregory, L. .; Ribeiro, B. L.; Junior, E. S.; Reyes, M. A.; Marques, E. C.; Nassar, A. C.

10.1101/826065 — zoology — Posted on 2019-10-31

10 Brain structural connectivity predicts brain functional complexity: DTI derived centrality accounts for variance in fractal properties of fMRI signal

Neudorf, J.; Ekstrand, C.; Kress, S.; Borowsky, R.

10.1101/826321 — neuroscience — Posted on 2019-10-31

11 Landscape structure shapes tree seedlings diversity at multiple spatial scales in a fragmented tropical rainforest

Nicasio-Arzeta, S.; Zermeno-Hernandez, I. E.; Maza-Villalobos, S.; Benitez-Malvido, J.

10.1101/826339 — ecology — Posted on 2019-10-31

12 The kinematics of cyclic human movement

Vieten, M. M.; Weich, C.

10.1101/826313 — biophysics — Posted on 2019-10-31

13 TAXyl: An in-silico method for predicting the thermal activity for xylanases from GH10 and GH11 families

Ariaeenejad, S.; Shahraki, M. F.; Farhadyar, K.; Kavousi, K.; Azarabad, M. H.; Boroomand, A.; Salekdeh, G. H.

10.1101/826040 — bioinformatics — Posted on 2019-10-31

14 Using artificial intelligence on dermatology conditions in Uganda: A case for diversity in training data sets for machine learning.

Kamulegeya, L. H.; Okello, M.; Bwanika, J. M.; Musinguzi, D.; Lubega, W.; Rusoke, D.; Nassiwa, F.; Börve, A.

10.1101/826057 — bioinformatics — Posted on 2019-10-31

15 Repetition Attenuates the Influence of Recency on Recognition Memory: Behavioral and Electrophysiological Evidence

Scofield, J. E.; Price, M. H.; Flores, A.; Merkle, E. C.; Johnson, J. D.

10.1101/826693 — neuroscience — Posted on 2019-10-31

16 Widespread presence of direction-reversing neurons in the mouse visual system

Billeh, Y. N.; Iyer, R.; Wahle, I. A.; Caldejon, S.; Durand, S.; Groblewski, P. A.; Larkin, J. D.; Lecoq, J.; Williford, A.; Mihalas, S.; Arkhipov, A.; de Vries, S. E. J.

10.1101/826701 — neuroscience — Posted on 2019-10-31

17 Formation of human long intergenic non-coding RNA genes and pseudogenes: ancestral sequences are key players

Delihas, N.

10.1101/826784 — genomics — Posted on 2019-10-31

18 Development of diagnostic SNP markers for quality assurance and control in sweetpotato breeding programs

Gemenet, D. C.; Kitavi, M. N.; David, M.; Ndege, D.; Ssali, R. T.; Swanckaert, J.; Makunde, G.; Yencho, C.; Gruneberg, W.; Carey, E.; Mwanga, R. O.; Andrade, M. I.; Heck, S.; Campos, H.

10.1101/826792 — genetics — Posted on 2019-10-31

19 Oceans apart: Heterogeneous patterns of parallel evolution in sticklebacks

Fang, B.; Kemppainen, P.; Momigliano, P.; Merilä, J.

10.1101/826412 — evolutionary biology — Posted on 2019-10-31

20 Lokiarchaeon exhibits homoacetogenesis

Orsi, W. D.; Vuillemin, A.; Rodriguez, P.; Coskun, O. K.; Gomez, G.; Lavik, G.; Mohrholz, V.; Ferdelman, T. G.

10.1101/826495 — microbiology — Posted on 2019-10-31

21 The Pipeline for Digital Analysis of IHC Images from NSCLC Xenograft Tissues

Kandru, R.; Desai, B.

10.1101/826545 — cancer biology — Posted on 2019-10-31

22 On the Boundary Conditions of Avoidance Memory Reconsolidation: An Attractor Network Perspective

Santiago, R. M.; Tort, A. B.

10.1101/826909 — neuroscience — Posted on 2019-10-31

23 Timeless couples G quadruplex detection with processing by DDX11 during DNA replication

Lerner, L. K.; Holzer, S.; Kilkenny, M. L.; Murat, P.; Svikovic, S.; Schiavone, D.; Bittleston, A.; Maman, J. D.; Branzei, D.; Stott, K.; Pellegrini, L.; Sale, J.

10.1101/826578 — molecular biology — Posted on 2019-10-31

24 Histone methyltransferase DOT1L controls state-specific identity during B cell differentiation

Aslam, M. A.; Alemdehy, M. F.; Kwesi-Maliepaard, E. M.; Caganova, M.; Pardieck, I. N.; van den Brand, T.; Muhaimi, F. I.; van Welsem, T.; de Rink, I.; Song, J.-Y.; de Wit, E.; Arens, R.; Rajewsky, K.; Jacobs, H.; van Leeuwen, F.

10.1101/826370 — immunology — Posted on 2019-10-31

25 Foxi1 inactivation rescues loss of principal cell fate selection in Hes1-deficient kidneys but does not ensure maintenance of principal cell gene expression.

Mukherjee, M.; DeRiso, J.; Janga, M.; Fogarty, E.; Surendran, K.

10.1101/826610 — developmental biology — Posted on 2019-10-31

26 Blocking IRE1a-endoribonuclease activity in hepatic stellate cells decreases tumor cell proliferation and metastasis in hepatocellular carcinoma

Pavlovic, N.; Thanapirom, K.; Mazza, G.; Rombouts, K.; Gerwins, P.; Heindryckx, F.

10.1101/826453 — cancer biology — Posted on 2019-10-31

27 PKM2 ablation enhanced retinal function and survival in a preclinical model of retinitis pigmentosa

Zhang, E.; Ryu, J.; Levi, S. R.; Oh, J. K.; Hsu, C. W.; Lima de Carvalho, J. R.; Cui, X.; Yang, T.; Tsang, S. H.

10.1101/826651 — genetics — Posted on 2019-10-31

28 Glucose metabolism distinguishes TE from ICM fate during mammalian embryogenesis

Chi, F.; Sharpley, M. S.; Nagaraj, R.; Roy, S. S.; Banerjee, U.

10.1101/826875 — developmental biology — Posted on 2019-10-31

29 Aversion of the invasive Asian longhorned tick to the white-footed mouse, the dominant reservoir of tick-borne pathogens in the United States

Ronai, I.; Tufts, D. M.; Diuk-Wasser, M. A.

10.1101/826289 — zoology — Posted on 2019-10-31

30 Plumage manipulation alters the integration of social behavior, physiology, internal microbiome, and fitness.

Taff, C. C.; Zimmer, C.; Scheck, D.; Ryan, T. A.; Houtz, J. L.; Smee, M. R.; Hendry, T. A.; Vitousek, M. N.

10.1101/826719 — zoology — Posted on 2019-10-31

31 A Compendium of Kinetic Cell Death Modulatory Profiles Identifies Ferroptosis Regulators

Conlon, M.; Poltorack, C.; Forcina, G. C.; Wells, A.; Mallais, M.; Kahanu, A.; Magtanong, L.; Pratt, D.; Dixon, S. J.

10.1101/826925 — systems biology — Posted on 2019-10-31

32 Amperometric measurements of cocaine cue and novel context-evoked glutamate and nitric oxide release in the nucleus accumbens core

Siemsen, B.; McFaddin, J.; Haigh, K.; Brock, A.; Leath, M. N.; Hooker, K.; McGonegal, L.; Scofield, M.

10.1101/826677 — neuroscience — Posted on 2019-10-31

33 An abundant quiescent stem cell population in Drosophila Malpighian tubules protects principal cells from kidney stones

Wang, C.; Spradling, A. C.

10.1101/826826 — developmental biology — Posted on 2019-10-31

34 Global Transcriptome Characterization and Assembly of Thermophilic Ascomycete Chaetomium thermophilum

Singh, A.; Schermann, G.; Reisloehner, S.; Kellner, N.; Hurt, E.; Brunner, M.

10.1101/826354 — bioinformatics — Posted on 2019-10-31

35 Bladder pressure encoding by near-independent fibre subpopulations - implications for decoding

Lubba, C. H.; Ouyang, Z.; Jones, N. S.; Bruns, T. M.; Schultz, S. R.

10.1101/826297 — bioengineering — Posted on 2019-10-31

36 Iterative Subtractive Binning of Freshwater Chronoseries Metagenomes Identifies over Four Hundred Novel Species and their Ecologic Preferences

Rodriguez-R, L. M.; Tsementzi, D.; Luo, C.; Konstantinidis, K. T.

10.1101/826941 — genomics — Posted on 2019-10-31

37 Secondary metabolic symbiosis in shipworms (Teredinidae)

Altamia, M. A.; Lin, Z.; Trindade-Silva, A. E.; Uy, I. D.; Shipway, J. R.; Veras Wilke, D.; Concepcion, G. P.; Distel, D. L.; Schmidt, E. W.; Haygood, M. G.

10.1101/826933 — microbiology — Posted on 2019-10-31

38 Multi-omic signatures identify pan-cancer classes of tumors beyond tissue of origin.

Gonzalez-Reymundez, A.; Vazquez, A. I.

10.1101/806323 — genomics — Posted on 2019-10-31

39 Effects of N-Acetyl-Leucine and its enantiomers in Niemann-Pick disease type C cells

te Vruchte, D.; Galione, A.; Strupp, M.; Mann, M.

10.1101/826222 — cell biology — Posted on 2019-10-31

40 Combining single-cell RNA-sequencing with a molecular atlas unveils new markers for C. elegans neuron classes.

Lorenzo, R.; Onizuka, M.; Defrance, M.; Laurent, P.

10.1101/826560 — genetics — Posted on 2019-10-31

41 Evolutionary Origins of Recurrent Pancreatic Cancer

Sakamoto, H.; Attiyeh, M.; Gerold, J.; Makohon-Moore, A. P.; Hayashi, A.; Hong, J.; Kappagantula, R.; Zhang, L.; Melchor, J.; Reiter, J.; Heyde, A.; Bielski, C.; Penson, A.; Chakravarty, D.; O'Reilly, E.; Wood, L.; Hruban, R. H.; Nowak, M. A.; Socci, N.; Taylor, B. S.; Iacobuzio-Donahue, C. A.

10.1101/811133 — cancer biology — Posted on 2019-10-31

42 Protein Arginine Deiminase 4 Antagonizes Methylglyoxal-induced Histone Glycation

Zheng, Q.; Osunsade, A.; David, Y.

10.1101/826818 — biochemistry — Posted on 2019-10-31

43 Machine learning of stochastic gene network phenotypes

Park, K.; Prustel, T.; Lu, Y.; Tsang, J. S.

10.1101/825943 — systems biology — Posted on 2019-10-31

44 GluD1 knockout mice with a pure C57BL/6N background show impaired fear memory, social interaction, and enhanced depressive-like behavior

Nakamoto, C.; Kawamura, M.; Nakatsukasa, E.; Natsume, R.; Takao, K.; Watanabe, M.; Abe, M.; Takeuchi, T.; Sakimura, K.

10.1101/826768 — neuroscience — Posted on 2019-10-31

45 Collective MAPK Signaling Dynamics Coordinates Epithelial Homeostasis

Aikin, T. J.; Peterson, A. F.; Pokrass, M. J.; Clark, H. R.; Regot, S.

10.1101/826917 — cell biology — Posted on 2019-10-31

46 Non-Parametric Rank Statistics for Spectral Power and Coherence

Nasseroleslami, B.; Dukic, S.; Bista, S.; Buxo, T.; Coffey, A.; McMackin, R.; Muthuraman, M.; Hardiman, O.; Lalor, E. C.; Lowery, M. M.

10.1101/818906 — bioinformatics — Posted on 2019-10-31

47 The human mitochondrial 12S rRNA m4C methyltransferase METTL15 is required for proper mitochondrial function

Shi, Y.; Chen, H.; Shi, Z.; Guo, J.; Chang, K.-j.; Chen, Q.; Haigis, M.; Yao, C.

10.1101/809756 — molecular biology — Posted on 2019-10-31

48 AB_SA: Tracing the source of bacterial strains based on accessory genes. Application to Salmonella Typhimurium environmental strains

GUILLIER, L.; Gourmelon, M.; Lozach, S.; Cadel-Six, S.; Vignaud, M.-L.; Munck, N. S.; Hald, T.; Palma, F.

10.1101/814459 — microbiology — Posted on 2019-10-31

49 Natively Oxidized Amino Acid Residues in the Spinach PS I-LHC I Supercomplex

Kale, R.; Sallans, L.; Frankel, L. K.; Bricker, T. M.

10.1101/826362 — biochemistry — Posted on 2019-10-31

50 The BELT and phenoSEED platforms: shape andcolour phenotyping of seed samples

Halcro, K.; McNabb, K.; Lockinger, A.; Socquet-Juglard, D.; Bett, K.; Noble, S.

10.1101/825695 — plant biology — Posted on 2019-10-31

51 A cryo-tomography-based volumetric model of the actin core of mouse vestibular hair cell stereocilia lacking plastin 1

Song, J.; Patterson, R.; Krey, J. F.; Hao, S.; Wang, L.; Ng, B.; Sazzed, S.; Kovacs, J.; Wriggers, W.; He, J.; Barr-Gillespie, P. G.; Auer, M. G.

10.1101/825737 — neuroscience — Posted on 2019-10-31

52 Regeneration of dorsal spinal cord neurons after injury via in situ NeuroD1-mediated astrocyte-to-neuron conversion

Puls, B.; Ding, Y.; Pan, M.; Zhang, L.; Forsyth, C.; Metzger, M.; Rana, T.; Ding, X.; Keefe, M.; Cai, A.; Redilla, A.; Lai, M.; Li, H.; Chen, G.

10.1101/818823 — neuroscience — Posted on 2019-10-31

53 Cortisol-induced signatures of stress in the fish microbiome

Uren Webster, T. M.; Rodriguez-Barreto, D.; Consuegra, S.; Garcia de Leaniz, C.

10.1101/826503 — microbiology — Posted on 2019-10-31

54 The histone methyltransferase DOT1L prevents antigen-independent differentiation and safeguards epigenetic identity of CD8+ T cells

Kwesi-Maliepaard, E. M.; Aslam, M. A.; Alemdehy, M. F.; van den Brand, T.; McLean, C.; Vlaming, H.; van Welsem, T.; Korthout, T.; Lancini, C.; Hendriks, S.; Ahrends, T.; van Dinther, D.; den Haan, J. M.; Borst, J.; de Wit, E.; van Leeuwen, F.; Jacobs, H.

10.1101/826255 — immunology — Posted on 2019-10-31

55 Air pollution mediates diabetes by disrupting gut innate mucosal immunity

Bosch, A. J. T.; Rohm, T. V.; AlAsfoor, S.; Baumann, Z.; Stawiski, M.; Dervos, T.; Mitrovic, S.; Roux, J.; Meier, D. T.; Cavelti-Weder, C.

10.1101/827014 — immunology — Posted on 2019-10-31

56 Retinoic acid organizes the vagus motor topographic map via spatiotemporal regulation of Hgf/Met signaling

Isabella, A. J.; Barsh, G. R.; Stonick, J. A.; Moens, C. B.

10.1101/826735 — developmental biology — Posted on 2019-10-31

57 Purification, identification, and characterization of two benzophenanthridine alkaloids from Corydalis longicalcarata rhizomes with anti-mitotic and polyploidy-inducing activities

Zhang, J.; Li, J.; Yan, Z.; Li, H.; Shi, Q.; Huang, L.; Allen, T.; Yang, D.

10.1101/821124 — cancer biology — Posted on 2019-10-31

58 Connecting omics signatures of diseases, drugs, and mechanisms of actions with iLINCS

Pilarczyk, M.; Najafabadi, M. F.; Kouril, M.; Vasiliauskas, J.; Niu, W.; Shamsaei, B.; Mahi, N. A.; Zhang, L.; Clark, N. A.; Ren, Y.; White, S.; Karim, R. S.; Biesiada, J.; Bennett, M. F.; Xu, H.; Davidson, S.; Reichard, J. F.; Stathias, V.; Koleti, A.; Vidovic, D.; Clarke, D. J. B.; Schurer, S. C.; Ma'ayan, A.; Meller, J.; Medvedovic, M.

10.1101/826271 — bioinformatics — Posted on 2019-10-31

59 Hat1-Dependent Lysine Acetylation Targets Diverse Cellular Functions

Agudelo Garcia, P. A.; Parthun, M.

10.1101/825539 — biochemistry — Posted on 2019-10-31

60 Human glial progenitor cells effectively remyelinate the demyelinated adult brain

Windrem, M.; Schanz, S.; Zou, L.; Chandler-Militello, D.; Kuypers, N. J.; Mariani, J. N.; Goldman, S. A.

10.1101/822494 — neuroscience — Posted on 2019-10-31

61 Obesity Potentiates TH2 Immunopathology via Dysregulation of PPAR

Bapat, S.; Liang, Y.; Liu, S.; Zhang, L.-j.; Vogel, I.; Marr, D. J.; Zhou, C.; Choi, E. J.; Chang, C.; He, N.; LeBlanc, M.; Lee, I.-k.; Suh, J. M.; Crotty Alexander, L. E.; Liddle, C.; Atkins, A. R.; Yu, R. T.; Downes, M.; Ansel, K. M.; Marson, A.; Gallo, R. L.; Evans, R. M.; Zheng, Y.

10.1101/825836 — immunology — Posted on 2019-10-31

62 Ghost QTL and hotspots in experimental crosses - novel solution by mixed model with nonzero mean

Szulc, P. M.; Wallin, J.; Bogdan, M.; Doerge, R. W.; Siegmund, D. O.

10.1101/825562 — genetics — Posted on 2019-10-31

63 A geostatistical approach to modelling human Holocene migrations in Europe using ancient DNA

Racimo, F.; Woodbridge, J.; Fyfe, R.; Sikora, M.; Sjogren, K.-G.; Kristiansen, K.; Vander Linden, M.

10.1101/826149 — evolutionary biology — Posted on 2019-10-31

64 From plant populations to communities: using hierarchical trait environment relationships to reveal within ecosystem filtering

Deschamps, L.; Proulx, R.; Gross, N.; Rheault, G.; Maire, V.

10.1101/825471 — ecology — Posted on 2019-10-31

65 CRISPRCasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems

Padilha, V. A.; Alkhnbashi, O. S.; Shah, S. A.; de Carvalho, A. C. P. L. F.; Backofen, R.

10.1101/817619 — bioinformatics — Posted on 2019-10-31

66 Productive lifespan and resilience rank can be predicted from on-farm first parity sensor data but not using a common equation across farms

Adriaens, I.; Friggens, N. C.; Ouweltjes, W.; Scott, H.; Aernouts, B.; Statham, J.

10.1101/826099 — bioengineering — Posted on 2019-10-31

67 TXO: Transcription-Only genetic circuits as a novel cell-free approach for Synthetic Biology

Millacura, F. A.; Li, M.; Valenzuela-Ortega, M. A.; French, C.

10.1101/826230 — synthetic biology — Posted on 2019-10-31

68 The Impact of Edema and Fiber Crossing on Diffusion MRI Metrics: DBSI vs. Diffusion ODF

Ye, Z.; Gary, S. E.; Sun, P.; Mustafi, S. M.; Glenn, G. R.; Yeh, F.-C.; Merisaari, H.; Huang, G.-S.; Kao, H.-W.; Lin, C.-Y.; Wu, Y.-C.; Jensen, J. H.; Song, S.-K.

10.1101/821082 — neuroscience — Posted on 2019-10-31

69 A circuit mechanism for irrationalities in decision-making and NMDA receptor hypofunction: behaviour, computational modelling, and pharmacology

Cavanagh, S. E.; Lam, N. H.; Murray, J. D.; Hunt, L. T.; Kennerley, S. W.

10.1101/826214 — neuroscience — Posted on 2019-10-31

70 Retinoic acid accelerates the specification of enteric neural progenitors from in vitro-derived neural crest

Frith, T. J. R.; Gogolou, A.; Hackland, J. O. S.; Barbaric, I.; Thapar, N.; Burns, A. J.; Andrews, P. W.; Tsakiridis, A.; McCann, C. J.

10.1101/819748 — developmental biology — Posted on 2019-10-31

71 Characterization of HIF-dependent alternative isoforms in pancreatic cancer

Markolin, P.; Davidson, N.; Hirt, C. K.; Chabbert, C.; Zamboni, N.; Schwank, G.; Raetsch, G.

10.1101/826156 — cell biology — Posted on 2019-10-31

72 Notes on the threatened lowland forests of Mt Cameroon and their endemics including Drypetes njonji sp. nov., with a key to species of Drypetes sect. Stipulares (Putranjivaceae).

Cheek, M.; Ndam, N.; Budden, A.

10.1101/825273 — plant biology — Posted on 2019-10-31

73 Enhanced prediction of gene and missense rare-variant pathogenicity by joint analysis of gene burden and amino-acid residue position

Waring, A.; Harper, A.; Salatino, S.; Kramer, C.; Neubauer, S.; HCMR Investigators, ; Thomson, K.; Watkins, H.; Farrall, M.

10.1101/826164 — genetics — Posted on 2019-10-31

74 Ancient Yersinia pestis genomes provide no evidence for the origins or spread of the Justinianic Plague

Keller, M.; Spyrou, M. A.; McCormick, M.; Bos, K. I.; Herbig, A.; Krause, J.

10.1101/819698 — evolutionary biology — Posted on 2019-10-31

75 Label-free horizontal EMSA for analysis of protein-RNA interactions

Greenbaum, N. L.; Perea, W.

10.1101/825679 — biophysics — Posted on 2019-10-31

76 Modeling Abiotic Niches of Crops and Wild Ancestors Using Deep Learning: A Generalized Approach

Hulleman, W. G.; Vos, R. A.

10.1101/826347 — bioinformatics — Posted on 2019-10-31

77 Structures of three MORN repeat proteins and a re-evaluation of the proposed lipid-binding properties of MORN repeats

Sajko, S.; Grishkovskaya, I.; Kostan, J.; Graewert, M.; Setiawan, K.; Truebestein, L.; Niedermuller, K.; Gehin, C.; Sponga, A.; Puchinger, M.; Gavin, A.-C.; Svergun, D. I.; Leonard, T.; Smith, T. K.; Morriswood, B. C.; Djinovic-Carugo, K.

10.1101/826180 — biochemistry — Posted on 2019-10-31

78 Cumulative estrogen exposure, APOE genotype, and women’s brain aging - a population-based neuroimaging study

de Lange, A.-M. G.; Barth, C.; Kaufmann, T.; Maximov, I.; van der Meer, D.; Agartz, I.; Westlye, L. T.

10.1101/826123 — neuroscience — Posted on 2019-10-31

79 A Synthetic Biology Approach to Sequential Stripe Patterning and Somitogenesis

Wu, F.; He, C.; Fang, X.; Baez, J.; Ohnmacht, T.; Zhang, Q.; Chen, X.; Allison, K. R.; Kuang, Y.; Wang, X.

10.1101/825406 — synthetic biology — Posted on 2019-10-31

80 Hippocampal-like network dynamics underlie avian sharp wave-ripples

Yeganegi, H.; Luksch, H.; Ondracek, J. M.

10.1101/825075 — neuroscience — Posted on 2019-10-31

81 ECMarker: Interpretable machine learning model identifies gene expression biomarkers predicting clinical outcomes and reveals molecular mechanisms of human disease in early stages

Jin, T.; Talos, F. M.; Wang, D.

10.1101/825414 — bioinformatics — Posted on 2019-10-31

82 Detecting and Isolating Mass Balance Errors in Reaction Based Models in Systems Biology

Shin, W.; Hellerstein, J. L.

10.1101/816876 — systems biology — Posted on 2019-10-31

83 Amplitude effects allow short jetlags and large seasonal phase shifts in minimal clock models

Ananthasubramaniam, B.; Schmal, C.; Herzel, H.

10.1101/825331 — systems biology — Posted on 2019-10-31

84 A Comprehensive Integrated Anatomical And Molecular Atlas Of Rodent Intrinsic Cardiac Nervous System

Achanta, S.; Gorky, J. M.; Leung, C.; Moss, A.; Robbins, S.; Eisenman, L.; Chen, J.; Tappan, S.; Heal, M.; Farahani, N.; Huffman, T.; Cheng, Z.; Vadigepalli, R.; Schwaber, J. S.

10.1101/661033 — neuroscience — Posted on 2019-10-31

85 Dopamine gates prediction error forwarding in the cortices of the inferior colliculus

Valdes-Baizabal, C.; Carbajal, G. V.; Perez-Gonzalez, D.; Malmierca, M. S.

10.1101/824656 — neuroscience — Posted on 2019-10-31

86 A Study of Representational Similarity: The Emergence of Object Concepts in Rapid Serial Visual Presentation Streams

Zhou, I. X. D.; Grootswagers, T.; Segula, B.; Robinson, A.; Shatek, S.; Whyte, C.; Carlson, T.

10.1101/824565 — neuroscience — Posted on 2019-10-31

87 Messenger RNAs with large numbers of upstream ORFs are translated via leaky scanning and reinitiation in the asexual stages of Plasmodium falciparum

Kaur, C.; Kumar, M.; Patankar, S.

10.1101/823443 — molecular biology — Posted on 2019-10-31

88 Pooled CRISPRi screening of the cyanobacterium Synechocystis sp. PCC 6803 for enhanced growth, tolerance, and chemical production

Yao, L.; Shabestary, K.; Björk, S. M.; Asplund-Samuelsson, J.; Joensson, H. N.; Jahn, M.; Hudson, E. P.

10.1101/823534 — microbiology — Posted on 2019-10-31

89 Evidence that APP gene copy number changes reflect recombinant vector contamination

Kim, J.; Zhao, B.; Huang, A. Y.; Miller, M. B.; Lodato, M. A.; Walsh, C. A.; Lee, E. A.

10.1101/706788 — genomics — Posted on 2019-10-31

90 Inference and effects of barcode multiplets in droplet-based single-cell assays

Lareau, C.; Ma, S.; Duarte, F.; Buenrostro, J. D.

10.1101/824003 — genomics — Posted on 2019-10-31

91 scATAC-pro: a comprehensive workbench for single-cell chromatin accessibility sequencing data

Yu, W.; Uzun, Y.; Zhu, Q.; Chen, C.; Tan, K.

10.1101/824326 — bioinformatics — Posted on 2019-10-31

92 Investigating the influence of environment on the evolution of Hsp90 using comprehensive fitness maps

Flynn, J. M.; Rossouw, A.; Cote-Hammarlof, P. A.; Fragata, I.; Mavor, D.; Hollins, C.; Bank, C.; Bolon, D. N. A.

10.1101/823468 — evolutionary biology — Posted on 2019-10-31

93 Chromatin-based techniques map DNA interaction landscapes in psoriasis susceptibility loci and highlight KLF4 as a target gene in 9q31

Ray-Jones, H.; Duffus, K.; McGovern, A.; Martin, P.; Shi, C.; Hankinson, J.; Gough, O.; Yarwood, A.; Morris, A.; Adamson, A.; Taylor, C.; Ding, J.; Gaddi, P.; Fu, Y.; Gaffney, P.; Orozco, G.; Warren, R.; Eyre, S.

10.1101/822304 — genomics — Posted on 2019-10-31

94 On islands, evolutionary but not functional originality is rare

Veron, S.; Pellens, R.; Kondratyeva, A.; Grandcolas, P.; Govaerts, R.; Robuchon, M.; Haevermans, T.; Mouchet, M.

10.1101/822064 — ecology — Posted on 2019-10-31

95 HD Spot: Interpretable Deep Learning Classification of Single Cell Transcript Data

Prince, E. W.; Hankinson, T. C.

10.1101/822759 — bioinformatics — Posted on 2019-10-31

96 A single-sample circadian biomarker that performs across populations and platforms

Wu, G.; Ruben, M. D.; Francey, L. J.; Smith, D. F.; Sherrill, J. D.; Oblong, J. E.; Mills, K. J.; Hogenesch, J. B.

10.1101/820811 — systems biology — Posted on 2019-10-31

97 Increased ultra-rare variant load in an isolated Scottish population impacts exonic and regulatory regions

Halachev, M.; Meynert, A.; Taylor, M. S.; Vitart, V.; Kerr, S. M.; Klaric, L.; SGP Consortium, ; Aitman, T. J.; Haley, C. S.; Prendergast, J. G.; Pugh, C.; Hume, D. A.; Harris, S. E.; Liewald, D. C.; Deary, I. J.; Semple, C. A.; Wilson, J. F.

10.1101/809244 — genomics — Posted on 2019-10-31

98 A hierarchical framework for segmenting movement paths

Getz, W. M.

10.1101/819763 — ecology — Posted on 2019-10-31

99 eMED-DNA: An in silico operating system for clinical medical data storage within the human genome

Jakaria, M.; Sarker, K.; Uddin, M. R.; Islam, M. M.; Das, T.; Shakur, R.; Bayzid, M. S.

10.1101/814830 — bioinformatics — Posted on 2019-10-31

100 Ubiquitylated H2A.Z nucleosomes are associated with nuclear architectural proteins and global transcriptional silencing

Ng, M. K.; Braunschweig, U.; Blencowe, B.; Cheung, P.

10.1101/759852 — biochemistry — Posted on 2019-10-31

101 Chemogenetic inhibition in the dorsal striatum reveals regional specificity of direct and indirect pathway control of action sequencing.

Garr, E.; Delamater, A. R.

10.1101/796698 — neuroscience — Posted on 2019-10-31

102 Landscape of Dysregulated Placental RNA Editing Associated with Preeclampsia

Yang, X.; Yang, J.; Liang, X.; Chen, Q.; Jiang, S.; Liu, H.; Gao, Y.; Ren, Z.; Yu, Y.; Zhong, M.; Yang, X.

10.1101/797365 — genomics — Posted on 2019-10-31

103 ISX-9 manipulates endocrine progenitor fate revealing conserved intestinal lineages in mouse and human.

Tsakmaki, A.; Fonseca Pedro, P.; Pavlidis, P.; Hayee, B. H.; Bewick, G. A.

10.1101/787788 — cell biology — Posted on 2019-10-31

104 KinasepKipred: A Predictive Model for Estimating Ligand-Kinase Inhibitor Constant (pKi).

KC, G.; Hassan, M. M.; Sirimulla, S.

10.1101/798561 — bioinformatics — Posted on 2019-10-31

105 Genetic Algorithms for model refinement and rule discovery in a high-dimensional agent-based model of inflammation

Cockrell, C.; An, G.

10.1101/790394 — systems biology — Posted on 2019-10-31

106 Network models predict that pyramidal neuron hyperexcitability and synapse loss in the dlPFC lead to age-related spatial working memory impairment in rhesus monkeys

Ibanez, S.; Luebke, J. I.; Chang, W.; Draguljic, D.; Weaver, C. M.

10.1101/745901 — neuroscience — Posted on 2019-10-31

107 Size-dependent increase in RNA Polymerase II initiation rates mediates gene expression scaling with cell size

Sun, X.-M.; Bowman, A.; Priestman, M.; Bertaux, F.; Martinez-Segura, A.; Tang, W.; Dormann, D.; Shahrezaei, V.; Marguerat, S. B.

10.1101/754788 — molecular biology — Posted on 2019-10-31

108 Structures of the ATP-fueled ClpXP proteolytic machine bound to protein substrate

Fei, X.; Bell, T. A.; Jenni, S.; Stinson, B. M.; Baker, T. A.; Harrison, S. C.; Sauer, R. T.

10.1101/704999 — biophysics — Posted on 2019-10-31

109 Evolutionary dynamics of microbial communities in bioelectrochemical systems.

Szydlowski, L.; Sorokin, A.; Vasieva, O.; Boerner, S.; Fedorovich, V.; Goryanin, I.

10.1101/725580 — systems biology — Posted on 2019-10-31

110 Alignment and mapping methodology influence transcript abundance estimation

Srivastava, A.; Malik, L.; Sarkar, H.; Zakeri, M.; Almodaresi, F.; Soneson, C.; Love, M. I.; Kingsford, C.; Patro, R.

10.1101/657874 — bioinformatics — Posted on 2019-10-31

111 The balance of interaction types determines the assembly and stability of ecological communities

Qian, J. J.; Akcay, E.

10.1101/643478 — ecology — Posted on 2019-10-31

112 Deep reinforcement learning for the control of microbial co-cultures in bioreactors

Treloar, N. J.; Fedorec, A. J. H.; Ingalls, B. P.; Barnes, C. P.

10.1101/457366 — synthetic biology — Posted on 2019-10-31

113 Allometric scaling impacts plasticity in biomass allocation, morphology and anatomical traits due to above and belowground resource limitation in cultivated sunflower (Helianthus annuus L.)

Wang, Y.; Donovan, L.; Temme, A.

10.1101/504316 — plant biology — Posted on 2019-10-31

114 In vitro Evaluation of Antifungal Drug Combinations against Multidrug-resistant Candida auris isolates from New York Outbreak

O'Brien, B.; Chaturvedi, S.; Chaturvedi, V.

10.1101/593848 — microbiology — Posted on 2019-10-31

115 Rewiring of Th-memory-associated gene co-expression networks underlie immunotherapy-induced changes in symptom expression in mite-sensitised atopics

Jones, A. C.; Anderson, D.; Troy, N. M.; Mallon, D.; Hartmann, R.; Serralha, M.; Holt, B. J.; Bosco, A.; Holt, P. G.

10.1101/473561 — immunology — Posted on 2019-10-31

116 Pericentromeric heterochromatin is hierarchically organized and spatially contacts H3K9me2/3 islands located in euchromatic genome

Lee, Y. C. G.; Ogiyama, Y.; Martins, N. M. C.; Beliveau, B. J.; Acevedo, D.; Wu, C.- t.; Cavalli, G.; Karpen, G. H.

10.1101/525873 — genomics — Posted on 2019-10-31

117 A unique No-Go Decay cleavage in mRNA exit-tunnel of ribosome produces 5’-OH ends phosphorylated by Trl1

Navickas, A.; Chamois, S.; Saint-Fort, R.; Henri, J.; Torchet, C.; Benard, L.

10.1101/465633 — molecular biology — Posted on 2019-10-31

118 Cooperation of partially-transformed clones: an invisible force behind the early stages of carcinogenesis

Esposito, A.

10.1101/431478 — cancer biology — Posted on 2019-10-31

119 Machine learning techniques for classifying the mutagenic origins of point mutations

Zhu, Y.; Soon, C. O.; Huttley, G. A.

10.1101/342618 — bioinformatics — Posted on 2019-10-31

120 Mitochondrial Na+ controls oxidative phosphorylation and hypoxic redox signalling

Hernansanz-Agustin, P.; Choya-Foces, C.; Carregal-Romero, S.; Ramos, E.; Oliva, T.; Villa-Pina, T.; Moreno, L.; Izquierdo-Alvarez, A.; Cabrera-Garcia, J. D.; Cortes, A.; Lechuga-Vieco, A. V.; Jadiya, P.; Navarro, E.; Parada, E.; Palomino-Antolin, A.; Tello, D.; Acin-Perez, R.; Rodriguez-Aguilera, J. C.; Navas, P.; Cogolludo, A.; Lopez-Montero, I.; Martinez-del-Pozo, A.; Egea, J.; Lopez, M. G.; Elrod, J. W.; Ruiz-Cabello, J.; Bogdanova, A.; Enriquez, J. A.; Martinez-Ruiz, A.

10.1101/385690 — biochemistry — Posted on 2019-10-31

121 miRNA profiling of primate cervicovaginal lavage and extracellular vesicles reveals miR-186-5p as a potential retroviral restriction factor in macrophages

Zhao, Z.; Muth, D. C.; Mulka, K.; Powell, B. H.; Hancock, G. V.; Liao, Z.; Metcalf Pate, K. A.; Witwer, K. W.

10.1101/263947 — molecular biology — Posted on 2019-10-31

122 Presynaptic α2δ subunits are key organizers of glutamatergic synapses

Schoepf, C. L.; Geisler, S.; Stanika, R. I.; Campiglio, M.; Kaufmann, W. A.; Nimmervoll, B.; Schlick, B.; Shigemoto, R.; Obermair, G. J.

10.1101/826016 — neuroscience — Posted on 2019-10-31

123 TnFLX: a third-generation mariner-based transposon system for Bacillus subtilis

Dempwolff, F.; Sanchez, S.; Kearns, D. B.

10.1101/825950 — microbiology — Posted on 2019-10-31

124 Functional architecture of motion direction in the mouse superior colliculus

Li, Y.; Turan, Z.; Meister, M.

10.1101/825711 — neuroscience — Posted on 2019-10-31

125 ChpC controls twitching motility-mediated expansion of Pseudomonas aeruginosa biofilms in response to serum albumin, mucin and oligopeptides

Nolan, L. M.; McCaughey, L. C.; Merjane, J.; Turnbull, L.; Whitchurch, C. B.

10.1101/825596 — microbiology — Posted on 2019-10-31

126 Mitochondrial ascorbate synthesis acts as a pro-oxidant pathway and down-regulate energy supply in plants

Oliveira, J. G.; Morales, L. M. M.; Silva, G. M. C.; Santana, D. B.; Pireda, S. F.; Cogo, A. J. D.; Heringer, A. S.; Oliveira, T. R.; Reis, R. S.; Prado, L. A. S.; Oliveira, A. V.; Silveira, V.; Cunha, M.; Barros, C. F.; Facanha, A. R.; Baldet, P.; Bartoli, C. G.; Silva, M. G.

10.1101/825208 — plant biology — Posted on 2019-10-31

127 Identification of conserved proteomic networks in neurodegenerative dementia

Swarup, V.; Chang, T. S.; Duong, D. M.; Dammer, E. B.; Lah, J. J.; Johnson, E. C. B.; Seyfried, N. T.; Levey, A. I.; Geschwind, D. H.

10.1101/825802 — neuroscience — Posted on 2019-10-31

128 Right-lateralized fronto-parietal network and phasic alertness in healthy aging

Haupt, M.; Ruiz-Rizzo, A. L.; Sorg, C.; Finke, K.

10.1101/826008 — neuroscience — Posted on 2019-10-31

129 Bidirectional modulation of human emotional conflict resolution using intracranial stimulation

Paulk, A. C.; Yousefi, A.; Ellard, K. K.; Farnes, K.; Peled, N.; Crocker, B.; Zelmann, R.; Vallejo-Lopez, D.; Belok, G.; Zorowitz, S.; Basu, I.; Afzal, A.; Gilmour, A.; Weisholtz, D. S.; Cosgrove, G. R.; Chang, B. S.; Arle, J. E.; Williams, Z. M.; Eden, U. T.; Deckersbach, T.; Dougherty, D. D.; Eskandar, E. N.; Widge, A. S.; Cash, S. S.

10.1101/825893 — neuroscience — Posted on 2019-10-31

130 Dissociable brain mechanisms for long-term memory of disgust- and fear- related associations

Riegel, M.; Wierzba, M.; Wypych, M.; Ritchey, M.; Jednorog, K.; Grabowska, A.; Vuilleumier, P.; Marchewka, A.

10.1101/825844 — neuroscience — Posted on 2019-10-31

131 Brain morphology predicts long-term placebo response in multiple sclerosis patients

Cherkasova, M.; Fu, J. F.; Jarrett, M.; Johnson, P.; Abel, S.; Tam, R.; Rauscher, A.; Sossi, V.; Kolind, S.; Li, D.; Sadovnick, A. D.; Machan, L.; Girard, J. M.; Emond, F.; Vosoughi, R.; Traboulsee, A.; Stoessl, A. J.

10.1101/825638 — neuroscience — Posted on 2019-10-31

132 Computational and experimental investigation of biofilm disruption dynamics induced by high velocity gas jet impingement

Prades, L.; Fabbri, S.; Dorado, A. D.; Gamisans, X.; Stoodley, P.; Picioreanu, C.

10.1101/824532 — microbiology — Posted on 2019-10-31

133 The inactivation of enzymes belonging to the central carbon metabolism, a novel mechanism of developing antibiotic resistance

Gil-Gil, T.; Corona, F.; Martinez, J. L.; Bernardini, A.

10.1101/823013 — microbiology — Posted on 2019-10-31

134 Antagonism of PP2A is an independent and conserved function of HIV-1 Vif and causes cell cycle arrest

Marelli, S.; Williamson, J. C.; Protasio, A. V.; Naamati, A.; Greenwood, E. J.; Deane, J. E.; Lehner, P. J.; Matheson, N. J.

10.1101/825752 — microbiology — Posted on 2019-10-31

135 Rationally designed oral vaccines can set an evolutionary trap for Salmonella Typhimurium

Diard, M.; Bakkeren, E.; Hoces, D.; Lentsch, V.; Arnoldini, M.; Boehi, F.; Schumann-Moor, K.; Adamcik, J.; Piccoli, L.; Lanzavecchia, A.; Stadtmueller, B.; Donohue, N.; Vanderwoude, M.; Viollier, P.; Falquet, L.; Hockenberry, A.; Wuethrich, D.; Bonfiglio, F.; Egli, A.; Zandomeneghi, G.; Mezzenga, R.; Holst, O.; Meier, B.; Hardt, W.-D.; Slack, E.

10.1101/824821 — immunology — Posted on 2019-10-31

136 MinION sequencing of seafood in Singapore reveals creatively labelled flatfishes, confused roe, pig DNA in squid balls, and phantom crustaceans

Ho, J. K. I.; Puniamoorthy, J.; Srivathsan, A.; Meier, R.

10.1101/826032 — genomics — Posted on 2019-10-31

137 PUF family proteins FBF-1 and FBF-2 regulate germline stem and progenitor cell proliferation and differentiation in C. elegans

Wang, X.; Ellenbecker, M.; Hickey, B.; Day, N. J.; Voronina, E.

10.1101/825984 — developmental biology — Posted on 2019-10-31

138 Sense organ control in moths to moles is a gamble on information

Chen, C.; Murphey, T. D.; MacIver, M. A.

10.1101/826305 — bioinformatics — Posted on 2019-10-31

139 A performant bridge between fixed-size and variable-size seeding

Kutzner, A.; Kim, P.-S.; Schmidt, M. R.

10.1101/825927 — bioinformatics — Posted on 2019-10-31

140 Diversification of a cryptic radiation, a closer look at Madagascar’s recently recognized bird family

Younger, J.; Block, N. L.; Raherilalao, M.-J.; Maddox, J. D.; Wacker, K. S.; Kyriazis, C.; Goodman, S. M.; Reddy, S.

10.1101/825687 — evolutionary biology — Posted on 2019-10-31

141 RNA polymerase I passage through nucleosomes depends on its lobe binding subunits

Tschochner, H.; Merkl, P. E.; Pilsl, M.; Fremter, T.; Schwank, K.; Engel, C.; Längst, G.; Milkereit, P.; Griesenbeck, J.

10.1101/823658 — biochemistry — Posted on 2019-10-31

142 Developmental plasticity of hearing sensitivity in red-eared slider Trachemys scripta elegans

Wang, J.; Li, H.; Wang, T.; Chen, B.; Cui, J.; Shi, H.

10.1101/825968 — animal behavior and cognition — Posted on 2019-10-31

143 Cockroaches show individuality in learning and memory during classical and operant conditioning

Arican, C.; Bulk, J.; Deisig, N.; Nawrot, M. P.

10.1101/825265 — animal behavior and cognition — Posted on 2019-10-31

144 A selectable system to evaluate synthetic gene optimization features

Smider, B. A.; Gil, J.; Smider, V.

10.1101/825976 — synthetic biology — Posted on 2019-10-31

145 SLAMF6 deficiency augments tumor killing and skews towards an effector phenotype revealing it as a new T cell checkpoint

Hajaj, E.; Eisenberg, G.; Klein, S.; Frankenburg, S.; Merims, S.; Ben David, I.; Eisenhaure, T.; Henrickson, S. E.; Villani, A. C.; Hacohen, N.; Abudi, N.; Abramovich, R.; Cohen, J. E.; Peretz, T.; Veillette, A.; Lotem, M.

10.1101/824946 — physiology — Posted on 2019-10-31

146 Visualization of silver nanoparticle intracellular trafficking revealed nuclear translocation of silver ions leading to nuclear receptor impairment

Tardillo Suarez, V.; Karepina, E.; Chevallet, M.; Gallet, B.; Cottet-Rousselle, C.; Charbonnier, P.; Moriscot, C.; Michaud-Soret, I.; Bal, W.; Fuchs, A.; Tucoulou, R.; Jouneau, P.-H.; Veronesi, G.; Deniaud, A.

10.1101/825919 — pharmacology and toxicology — Posted on 2019-10-31

147 Rod-cone signal interference in the retina shapes perception in primates

Songco-Aguas, A.; Grimes, W. N.; Rieke, F.

10.1101/825851 — neuroscience — Posted on 2019-10-31

148 Distinct roles for motor cortical and thalamic inputs to striatum during motor learning and execution

Wolff, S. B. E.; Ko, R.; Ölveczky, B. P.

10.1101/825810 — neuroscience — Posted on 2019-10-31

149 Using Unmanned Aerial Vehicles (UAV) for free-roaming dog population size estimation

Warembourg, C.; Berger-Gonzalez, M.; Alvarez, D.; Maximiano Sousa, F. M.; Lopez Hernandez, A.; Roquel, P.; Eyerman, J.; Benner, M.; Dürr, S.

10.1101/823419 — ecology — Posted on 2019-10-31

150 Minutes-timescale 3D isotropic imaging of entire organs at subcellular resolution by content-aware compressed-sensing light-sheet microscopy

Fang, C.; Chu, T.; Yu, T.; Huang, Y.; Li, Y.; Wan, P.; Wang, D.; Wang, X.; Mei, W.; Zhu, D.; Fei, P.

10.1101/825901 — bioengineering — Posted on 2019-10-31

151 Topology of the U12-U6atac snRNA complex of the minor spliceosome and binding by NTC-related protein RBM22

Ciavarella, J.; Perea, W.; Greenbaum, N. L.

10.1101/825604 — biochemistry — Posted on 2019-10-31

152 Role of the central junction in folding topology of the protein-free human U2-U6 snRNA complex analyzed by time-resolved FRET

Chu, H.; Greenbaum, N.

10.1101/825547 — biochemistry — Posted on 2019-10-31

153 Amplitude effects allow short jetlags and large seasonal phase shifts in minimal clock models

Ananthasubramaniam, B.; Schmal, C.; Herzel, H.

10.1101/825331 — systems biology — Posted on 2019-10-31

154 Integrative Multi-Omics Analysis of Barley Genotypes Shows Differential Salt-Induced Osmotic Barriers and Response Phases Among Rootzones

Wing Ho Ho, W.; Hill, C. B.; Doblin, M. S.; Shelden, M.; van de Meene, A.; Rupasinghe, T.; Bacic, A.; Roessner, U.

10.1101/825059 — plant biology — Posted on 2019-10-31

155 Biophysical mechanisms to relate large-scale brain network dynamics to individual-specific variability of perception

Kumar, V. G.; Dutta, S.; Talwar, S.; Roy, D.; Banerjee, A.

10.1101/819896 — neuroscience — Posted on 2019-10-31

156 Hippocampal-like network dynamics underlie avian sharp wave-ripples

Ondracek, J. M.; Yeganegi, H.; Luksch, H.

10.1101/825075 — neuroscience — Posted on 2019-10-31

157 Preparation for upcoming attentional states in the hippocampus and medial prefrontal cortex

Günseli, E.; Aly, M.

10.1101/825349 — neuroscience — Posted on 2019-10-31

158 Harmonization of diffusion MRI datasets with adaptive dictionary learning

St-Jean, S.; Viergever, M. A.; Leemans, A.

10.1101/824706 — neuroscience — Posted on 2019-10-31

159 Interconversion between Anticipatory and Active GID E3 Ubiquitin Ligase Conformations via Metabolically Driven Substrate Receptor Assembly

Qiao, S.; Langlois, C. R.; Chrustowicz, J.; Sherpa, D.; Karayel, O.; Hansen, F. M.; Beier, V.; Gronau, S. v.; Bollschweiler, D.; Schafer, T.; Alpi, A. F.; Mann, M.; Prabu, J. R.; Schulman, B. A.

10.1101/824060 — molecular biology — Posted on 2019-10-31

160 Full-length immunoglobulin high-throughput sequencing reveals specific novel mutational patterns in POEMS syndrome

Bender, S.; Javaugue, V.; Saintamand, A.; Ayala, M. V.; Alizadeh, M.; Filloux, M.; Pascal, V.; Gachard, N.; Lavergne, D.; Auroy, F.; Cogne, M.; Bridoux, F.; Sirac, C.; Jaccard, A.

10.1101/824722 — immunology — Posted on 2019-10-31

161 Discrete populations of isotype-switched memory B lymphocytes are maintained in murine spleen and bone marrow

Riedel, R.; Addo, R. K.; Ferreira-Gomes, M.; Heinz, G. A.; Heinrich, F.; Kummer, J.; Greiff, V.; Schulz, D.; Klaeden, C.; Cornelis, R.; Menzel, U.; Kröger, S.; Stervbo, U.; Köhler, R.; Haftmann, C.; Kühnel, S.; Lehmann, K.; Maschmeyer, P.; McGrath, M.; Naundorf, S.; Sercan Alp, O.; Hahne, S.; Siracusa, F.; Stefanowski, J.; Weber, M.; Westendorf, K.; Zimmermann, J.; Hauser, A. E.; Reddy, S. T.; Durek, P.; Chang, H.-D.; Mashreghi, M.-F.; Radbruch, A.

10.1101/825224 — immunology — Posted on 2019-10-31

162 Predominance of positive epistasis among drug resistance-associated mutations in HIV-1 protease

Zhang, T.-h.; Dai, L.; Barton, J. P.; Du, Y.; Tan, Y.; Pang, W.; Chakraborty, A. K.; Lloyd-Smith, J. O.; Sun, R.

10.1101/822981 — evolutionary biology — Posted on 2019-10-31

163 Online Size Exclusion Chromatography-Fast Photochemical Oxidation of Proteins Allows for Targeted Structural Analysis of Conformationally Heterogeneous Mixtures

Tadi, S.; Sharp, J. S.

10.1101/825521 — biochemistry — Posted on 2019-10-31

164 Wolbachia manipulates host pre-imaginal learning in a parasitoid wasp

kishani farahani, h.; abrun, p.; douply, a.

10.1101/825455 — animal behavior and cognition — Posted on 2019-10-31

165 Identification of distinct pathological signatures induced by patient-derived α-synuclein structures in non-human primates

Bourdenx, M.; Nioche, A.; Dovero, S.; Arotcarena, M.-L.; Camus, S.; Porras, G.; Thiolat, M.-L.; Rougier, N. P.; Prigent, A.; Aubert, P.; Bohic, S.; Sandt, C.; Laferriere, F.; Doudnikoff, E.; Kruse, N.; Mollenhauer, B.; Novello, S.; Morari, M.; Leste-Lasserre, T.; Trigo Damas, I.; Goillandeau, M.; Perier, C.; Estrada, C.; Garcia Carrillo, N.; Recasens, A.; Vaikath, N. N.; El-Agnaf, O. M. A.; Herrero Ezquerro, M. T.; Derkinderen, P.; Vila Bover, M.; Obeso, J. A.; Dehay, B.; Bezard, E.

10.1101/825216 — neuroscience — Posted on 2019-10-31

166 Prediction of druggable proteins using machine learning and functional enrichment analysis: a focus on cancer-related proteins and RNA-binding proteins

Lopez-Cortes, A.; Cabrera-Andrade, A.; Cruz-Segundo, C. M.; Dorado, J.; Pazos, A.; Gonzales-Diaz, H.; Paz-y-Mino, C.; Perez-Castillo, Y.; Tejera, E.; Munteanu, C. R.

10.1101/825513 — bioinformatics — Posted on 2019-10-31

167 Short-wavelength violet light (420nm) stimulates melanopsin-dependent acute alertness responses in zebrafish

Contreras, J. E.; Lisse, T. S.; Bouzidi, C.; Cavanaugh, A. M.; Matynia, A.; Rieger, S.

10.1101/825257 — animal behavior and cognition — Posted on 2019-10-31

168 FrogCap: A modular sequence capture probe set for phylogenomics and population genetics for all frogs, assessed across multiple phylogenetic scales

Hutter, C. R.; Cobb, K. A.; Portik, D.; Travers, S. L.; Wood, P. L.; Brown, R. M.

10.1101/825307 — genomics — Posted on 2019-10-31

169 Ecological divergence and hybridization of Neotropical Leishmania parasites

Van den Broeck, F.; Savill, N. J.; Imamura, H.; Sanders, M.; Maes, I.; Cooper, S.; Mateus, D.; Jara, M.; Adaui, V.; Arevalo, J.; Llanos-Cuentas, A.; Garcia, L.; Cupolillo, E.; Miles, M.; Berriman, M.; Schnaufer, A.; Cotton, J.; Dujardin, J.-C.

10.1101/824912 — genomics — Posted on 2019-10-31

170 The Role of Gene Encoding Variation of DRD4 in the Relationship between Inattention and Seasonal Daylight

Vollebregt, M.; Franke, B.; Buitelaar, J. K.; Arnold, L. E.; Faraone, S.; Grevet, E. H.; Reif, A.; Zayats, T.; Bralten, J.; Bau, C. H.; Haavik, J.; Kuntsi, J.; Cupertino, R.; Loo, S.; Lundervold, A. J.; Ribases, M.; Sanchez-Mora, C.; Ramos-Quiroga, J. A.; Asherson, P.; Swanson, J. M.; Arns, M.

10.1101/825083 — genetics — Posted on 2019-10-31

171 finFindR: Computer-assisted Recognition and Identification of Bottlenose Dolphin Photos in R

Thompson, J. W.; Zero, V. H.; Schwacke, L. H.; Speakman, T. R.; Quigley, B. M.; Morey, J. S. M.; McDonald, T. L.

10.1101/825661 — bioinformatics — Posted on 2019-10-31

172 ECMarker: Interpretable machine learning model identifies gene expression biomarkers predicting clinical outcomes and reveals molecular mechanisms of human disease in early stages

Jin, T.; Talos, F. M.; Wang, D.

10.1101/825414 — bioinformatics — Posted on 2019-10-31

173 CloneSig: Joint inference of intra-tumor heterogeneity and signature deconvolution in tumor bulk sequencing data

Abecassis, J.; Reyal, F.; Vert, J.-P.

10.1101/825778 — bioinformatics — Posted on 2019-10-31

174 A peptide inhibitor of Tau-SH3 interactions ameliorates amyloid-β toxicity

Rush, T.; Roth, J. R.; Thompson, S. J.; Aldaher, A. R.; Cochran, J. N.; Roberson, E. D.

10.1101/825760 — neuroscience — Posted on 2019-10-31

175 Transcriptome profiles in brains of mice heterozygous for a DYT1 dystonia-associated mutation in the endogenous Tor1a gene

Mitchell, S. B.; Chimenti, M. S.; Kawano, H.; Yuen, T. M. T.; Sjurson, A. E.; Iwabuchi, S.; Knudtson, K. L.; Bair, T. B.; Kolbe, D.; Harata, N. C.

10.1101/825505 — neuroscience — Posted on 2019-10-31

176 Robustness of bidirectional microtubule network self-organization

Plochocka, A. Z.; Davie, A. M.; Bulgakova, N. A.; Chumakova, L.

10.1101/825786 — cell biology — Posted on 2019-10-31

177 Pan-cancer analysis of clonality and the timing of systemic spread in paired primary tumors and metastases

Hu, Z.; Li, Z.; Ma, Z.; Curtis, C.

10.1101/825240 — cancer biology — Posted on 2019-10-31

178 Detecting Local Genetic Correlations with Scan Statistics

GUO, H.; Li, J. J.; Lu, Q.; Hou, L.

10.1101/808519 — genetics — Posted on 2019-10-31

179 Caenorhabditis elegans ADAR editing and the ERI-6/7/MOV10 RNAi pathway silence endogenous viral elements and LTR retrotransposons

Fischer, S.; Ruvkun, G.

10.1101/825315 — genetics — Posted on 2019-10-31

180 A High-throughput Screening Method to Identify Proteins Involved in Unfolded Protein Response Signaling in Plants

Alcântara, A.; Seitner, D.; Navarrete, F.; Djamei, A.

10.1101/825190 — plant biology — Posted on 2019-10-31

181 CRISPR/Cas9 mediated intersectional knockout of GSK3β in D2 receptor expressing mPFC neurons reveals contributions to emotional regulation

Beaulieu, M.; Khlghatyan, J.

10.1101/825166 — neuroscience — Posted on 2019-10-31

182 RNA Pol II Length and Disorder Enable Cooperative Scaling of Transcriptional Bursting

Quintero-Cadena, P.; Lenstra, T. L.; Sternberg, P. W.

10.1101/825299 — molecular biology — Posted on 2019-10-31

183 Whole genome re-sequencing reveals recent signatures of selection in three strains of farmed Nile tilapia (Oreochromis niloticus)

Cadiz, M. I.; Lopez, M. E.; Diaz-Dominguez, D.; Caceres, G.; Yoshida, G.; Gomez-Uchida, D.; Yanez, J.

10.1101/825364 — genomics — Posted on 2019-10-31

184 Metagenomic analysis of a blood stain from the French revolutionary Jean-Paul Marat (1743-1793)

de Dios, A.; van Dorp, L.; Charlier, P.; Morfopoulou, S.; Lizano, E.; Bon, C.; Le Bitouze, C.; Alvarez-Estape, M.; Marques-Bonet, T.; Balloux, F.; Lalueza-Fox, C.

10.1101/825034 — genetics — Posted on 2019-10-31

185 Cofilin loss in Drosophila muscles contributes to myopathy through defective sarcomerogenesis

Balakrishnan, M.; Yu, S. F.; Chin, S. M.; Soffar, D. B.; Windner, S. E.; Goode, B.; Baylies, M.

10.1101/825448 — developmental biology — Posted on 2019-10-31

186 GLP-1 Notch - LAG-1 CSL control of the germline stem cell fate is mediated by transcriptional targets lst-1 and sygl-1

Schedl, T.; Chen, J.; Mohammad, A.; Pazdernik, N.; Huang, H.; Bowman, B.; Tycksen, E.

10.1101/825232 — developmental biology — Posted on 2019-10-31

187 Preparation of single-cell suspension from mouse breast cancer focusing on preservation of original cell state information and cell type composition

Abaffy, P.; Lettlova, S.; Truksa, J.; Kubista, M.; Sindelka, R.

10.1101/824714 — cancer biology — Posted on 2019-10-31

188 Somatic Truth Data from Cell Lineage

Shand, M.; Soto, J.; Lichtenstein, L.; Benjamin, D.; Farjoun, Y.; Brody, Y.; Maruvka, Y. E.; Blainey, P. C.; Banks, E.

10.1101/825042 — bioinformatics — Posted on 2019-10-31

189 BlackSheep: A Bioconductor and Bioconda package for differential extreme value analysis

Blumenberg, L.; Kawaler, E.; Cornwell, M.; Smith, S.; Ruggles, K.; Fenyo, D.

10.1101/825067 — bioinformatics — Posted on 2019-10-31

190 Polyjet 3D printing of tissue-mimicking materials: how well can 3D printed synthetic myocardium replicate mechanical properties of organic myocardium?

Severseike, L.; Lee, V.; Bakken, C.; Brandon, T.; Bhatia, V.

10.1101/825794 — bioengineering — Posted on 2019-10-31

191 Silicon Nanowires for Intracellular Optical Interrogation with Sub-Cellular Resolution

Rotenberg, M. Y.; Elbaz, B.; Nair, V.; Schaumann, E. N.; Yamamoto, N.; Matino, L.; Santoro, F.; Tian, B.

10.1101/825489 — bioengineering — Posted on 2019-10-31

192 A Synthetic Biology Approach to Sequential Stripe Patterning and Somitogenesis

Wu, F.; He, C.; Fang, X.; Baez, J.; Ohnmacht, T.; Zhang, Q.; Chen, X.; Allison, K. R.; Kuang, Y.; Wang, X.

10.1101/825406 — synthetic biology — Posted on 2019-10-31

193 Phosphorylation on PstP controls cell wall metabolism and antibiotic tolerance in Mycobacterium smegmatis

Shamma, F.; Papavinasasundaram, K.; Bandekar, A.; Sassetti, C. M.; Boutte, C. C.

10.1101/825588 — microbiology — Posted on 2019-10-31

194 Mapping the Immune Landscape of Clear Cell Renal Cell Carcinoma by Single-Cell RNA-seq

Vishwakarma, A.; Borcherding, N.; Chimenti, M. S.; Vishwakarma, P.; Nepple, K.; Salem, A.; Jenkins, R. W.; Zhang, W.; Zakharia, Y.

10.1101/824482 — immunology — Posted on 2019-10-31

195 Genome sequence and analysis of the eggplant (Solanum melongena L.)

Li, D.; Qian, J.; Li, W.; Jiang, Y.; Gan, G.; Li, W.; Chen, R.; Yu, N.; Li, Y.; Wu, Y.; Kang, D.; Lian, J.; Niu, Y.; Wang, Y.

10.1101/824540 — genomics — Posted on 2019-10-31

196 Genome-wide diversity of northern South America cultivated Coconut (Cocus nucifera L.) uncovers diversification times and targets of domestication of coconut globally

Munoz Perez, J. M.; Canas, G. P.; lopez, l.; Arias, T.

10.1101/825398 — genomics — Posted on 2019-10-31

197 Biases in arginine codon usage correlate with genetic disease risk

Schulze, K. V.; Hanchard, N. A.; Wangler, M. F.

10.1101/825703 — genetics — Posted on 2019-10-31

198 Ubiquitin and SUMO conjugation as biomarkers of Acute Myeloid Leukemias response to chemotherapies

Gatel, P.; Brockly, F.; Reynes, C.; Pastore, M.; Hicheri, Y.; Cartron, G.; Piechaczyk, M.; Bossis, G.

10.1101/825182 — cancer biology — Posted on 2019-10-31

199 NFATC4 Promotes Quiescence and Chemotherapy Resistance in Ovarian Cancer

Cole, A. J.; Iyengar, M.; OHayer, P.; Chan, D.; Greg Delgoffe, G.; Aird, K. M.; Yoon, E.; Bai, S.; Buckanovich, R. J.

10.1101/825497 — cancer biology — Posted on 2019-10-31

200 Modular protein-oligonucleotide signal exchange

Agrawal, D. K.

10.1101/825422 — biochemistry — Posted on 2019-10-31

201 Intrinsic Buffer Hydroxyl Radical Dosimetry Using Tris(Hydroxymethyl)Aminomethane

Roush, A. E.; Riaz, M.; Misra, S. K.; Weinberger, S. R.; Sharp, J. S.

10.1101/825463 — biochemistry — Posted on 2019-10-31

202 Population mobility and dengue fever transmission in a major city in Southeastern Brazil, 2007-2015

Johansen, I. C.; Castro, M. C.; Alves, L. C.; Carmo, R. L.

10.1101/825109 — ecology — Posted on 2019-10-30

203 Accumulation of storage proteins in plant seeds is mediated by amyloid formation

Antonets, K. S.; Belousov, M. V.; Sulatskaya, A. I.; Belousova, M. E.; Kosolapova, A. O.; Sulatsky, M. I.; Andreeva, E. A.; Zykin, P. A.; Malovichko, Y. V.; Shtark, O. Y.; Lykholay, A. N.; Volkov, K. V.; Kuznetsova, I. M.; Turoverov, K. K.; Kochetkova, E. Y.; Demidov, O. N.; Tikhonovich, I. A.; Nizhnikov, A. A.

10.1101/825091 — biochemistry — Posted on 2019-10-30

204 Intracellular localization and gene expression analysis provide new insights on LEA proteins diversity in anhydrobiotic midge

Nesmelov, A.; Kondratyeva, S. A.; Cherkasov, A. V.; Miyata, Y.; Tokumoto, S.; Kikawada, T.; Gusev, O. A.; Shagimardanova, E. I.

10.1101/825133 — molecular biology — Posted on 2019-10-30

205 The short-term high fat diet-induced increase in %5-methylcytosine expression in peripheral blood T lymphocytes, is attenuated by low-dose aspirin

Mutize, T.; Dludla, P. V.; Mkandla, Z.; Nkambule, B. B.

10.1101/825125 — immunology — Posted on 2019-10-30

206 Genetic diversity and population structure of indigenous chicken in Rwanda using microsatellite markers

HABIMANA, R.; Okeno, T. O.; Ngeno, K.; Mboumba, S.; Assami, P.; Gbotto, A.; Keambou, C. T.; Nishimwe, K.; Mahoro, J.; Yao, N.

10.1101/825141 — genetics — Posted on 2019-10-30

207 A de novo approach to inferring within-host fitness effects during untreated HIV-1 infection

Illingworth, C.; Raghwani, J.; Serwadda, D.; Sewankambo, N. K.; Robb, M.; Eller, M.; Redd, A.; Quinn, T.; Lythgoe, K.

10.1101/825117 — evolutionary biology — Posted on 2019-10-30

208 Innate Antifungal Immune Receptor, Dectin-1, Undergoes Ligand-Induced Oligomerization with Highly Structured β-Glucans and at Fungal Cell Contact Sites

Anaya, E. U.; Etemadi Amin, A.; Danielson, M.; Michel, K.; Neumann, A. K.

10.1101/824995 — immunology — Posted on 2019-10-30

209 Study on the efficacy of dsRNAs with increasing length in RNAi-based silencing of the Fusarium CYP51 genes

Hoefle, L.; Shrestha, A.; Werner, B.; Jelonek, L.; Koch, A.

10.1101/824953 — plant biology — Posted on 2019-10-30

210 Phosphorylation of the CAMTA3 transcription factor triggers its destabilization and nuclear export.

Jiang, X.; Hoehenwarter, W.; Scheel, D.; Lee, J.

10.1101/825323 — plant biology — Posted on 2019-10-30

211 Primary visual cortex excitability is not atypical in acquired synaesthesia

Lungu, L.; Stewart, R.; Luke, D. P.; Terhune, D. B.

10.1101/814475 — physiology — Posted on 2019-10-30

212 Associations between outdoor temperature and bright sunlight with metabolites in two population-based European cohorts

Eveleens Maarse, B. C.; Loh, N. Y.; Karpe, F.; Rosendaal, F. R.; van Heemst, D.; Mook-Kanamori, D. O.; Willems van Dijk, K.; Rensen, P. C.; Kooijman, S.; Christodoulides, C.; Noordam, R.

10.1101/818740 — physiology — Posted on 2019-10-30

213 MONOSYNAPTIC INPUTS TO EXCITATORY AND INHIBITORY NEURONS OF THE INTERMEDIATE AND DEEP LAYERS OF THE SUPERIOR COLLICULUS

Doykos, T. K.; Gilmer, J. I.; Person, A. L.; Felsen, G.

10.1101/824250 — neuroscience — Posted on 2019-10-30

214 Shared Neural Representations of Cognitive Conflict and Negative Affect in the Dorsal Anterior Cingulate Cortex

Vermeylen, L.; Wisniewski, D.; Gonzalez-Garcia, C.; Hoofs, V.; Notebaert, W.; Braem, S.

10.1101/824839 — neuroscience — Posted on 2019-10-30

215 Extensive functional repertoire underpins complex behaviours: insights from Parkinson’s disease

Sorrentino, P.; Rucco, R.; Baselice, F.; De Micco, R.; Tessitore, A.; Hillebrand, A.; Mandolesi, L.; Breakspear, M.; Gollo, L. L.; Sorrentino, G.

10.1101/823849 — neuroscience — Posted on 2019-10-30

216 Using the Tea Bag Index to unravel how interactions between an antibiotic (Trimethoprim) and endocrine disruptor (17a-estradiol) affect aquatic microbial activity.

Hunter, W. R.; Williamson, A.; Sarneel, J. M.

10.1101/809426 — microbiology — Posted on 2019-10-30

217 Leveraging multiple layers of data to predict Drosophila complex traits

Morgante, F.; Huang, W.; Sorensen, P.; Maltecca, C.; Mackay, T.

10.1101/824896 — genetics — Posted on 2019-10-30

218 Chemotherapy induced immunogenic cell death alters response to exogenous activation of STING pathway and PD-L1 immune checkpoint blockade in a syngeneic murine model of ovarian cancer.

Nersesian, S.; Shakfa, N.; Peterson, N.; Vidotto, T.; AfriyieAsante, A.; Lightbody, E.; Koti, M.

10.1101/824094 — cancer biology — Posted on 2019-10-30

219 Mutant Zp1 results in Zona Pellucida Lacking and Female Infertility in Rats and Humans

Lv, C.; Huang, H.-L.; Wang, Y.; Peng, T.-l.; Tan, H.-J.; Zeng, M.-H.; Quan, R.-P.; Deng, H.-W.; Xiao, H.

10.1101/825018 — genetics — Posted on 2019-10-30

220 Hypoxia inducible factor-2α increases sensitivity of colon cancer cells towards oxidative cell death

Singhal, R.; Olive, K. P.; Lyssiotis, C. A.; Shah, Y. M.

10.1101/823997 — cancer biology — Posted on 2019-10-30

221 Ecological character displacement destabilizes food webs

Barbour, M. A.

10.1101/824615 — ecology — Posted on 2019-10-30

222 Increasing vitrification temperature improves the cryo-electron microscopy reconstruction

Shi, H.; Wu, C.; Zhu, D.; Zhang, X.

10.1101/824698 — biophysics — Posted on 2019-10-30

223 Discovery and Engineering of a Therapeutic Interfering Particle (TIP): a combination self-renewing antiviral

Tanner, E. J.; Jung, S.-Y.; Glazier, J. J.; Thompson, C. E.; Zhou, Y.; Martin, B.; Son, H.-I.; Riley, J. L.; Weinberger, L. S.

10.1101/820456 — synthetic biology — Posted on 2019-10-30

224 Comparative analysis of seed size, germination, and vegetative allocation in annual and herbaceous perennial crops and their wild relatives in Lupinus and Phaseolus (Fabaceae)

Herron, S. A.; Rubin, M. J.; Ciotir, C.; Crews, T. E.; Van Tassel, D. L.; Miller, A. J.

10.1101/824375 — plant biology — Posted on 2019-10-30

225 A Study of Representational Similarity: The Emergence of Object Concepts in Rapid Serial Visual Presentation Streams

Zhou, I. X. D.; Grootswagers, T.; Segula, B.; Robinson, A.; Shatek, S.; Whyte, C.; Carlson, T.

10.1101/824565 — neuroscience — Posted on 2019-10-30

226 Analysing the safe and just operating space of agriculture in the world: past, present and future

Roy, A.; Pramanick, K.

10.1101/824797 — ecology — Posted on 2019-10-30

227 The realised velocity of climate change reveals remarkable idiosyncrasy of species’ distributional shifts

Pearse, W. D.; Davies, T. J.

10.1101/823930 — ecology — Posted on 2019-10-30

228 Histone H3K27me3 demethylases regulate human Th17 cell development and effector functions by impacting on metabolism

Cribbs, A. P.; Terlecki-Zaniewicz, S.; Philpott, M.; Baardman, J.; Ahern, D.; Lindow, M.; Obad, S.; Oerum, H.; Sampey, B.; Mander, P.; Penn, H.; Wordsworth, P.; Bowness, P.; Prinjha, R. K.; de Winther, M.; Feldmann, M.; Oppermann, U.

10.1101/820845 — immunology — Posted on 2019-10-30

229 Found in Transcription: Gene fusions arise through defects in RNA processing in the absence of chromosomal rearrangements.

Jiang, Y.; Apostolides, M. J.; Husic, M.; Siddaway, R.; Yu, M.; Mark, S.; Ramani, A. K.; Hawkins, C.; Brudno, M.

10.1101/825570 — genomics — Posted on 2019-10-30

230 Global transcriptome profiling uncovers footprints of root and shoot development in crop models barley and tomato

Naz, A. A.; Schneider, M.; Vedder, L.; Mathew, B.; Schoof, H.; Leon, J.

10.1101/825430 — genomics — Posted on 2019-10-30

231 Comparative transcriptome analysis of mule uncovered several heterosis-related genes for improving muscular endurance and cognition

Gao, S.

10.1101/823047 — genetics — Posted on 2019-10-30

232 Structure of the space of taboo-free sequences

Manuel, C.; von Haeseler, A.

10.1101/824847 — evolutionary biology — Posted on 2019-10-30

233 A multidimensional framework for measuring biotic novelty: How novel is a community?

Schittko, C.; Bernard-Verdier, M.; Heger, T.; Buchholz, S.; Kowarik, I.; von der Lippe, M.; Seitz, B.; Joshi, J.; Jeschke, J. M.

10.1101/824045 — ecology — Posted on 2019-10-30

234 Native Electrospray-based Metabolomics Enables the Detection of Metal-binding Compounds

Aron, A. T.; Petras, D.; Schmid, R.; Gauglitz, J. M.; Buttel, I.; Antelo, L.; Zhi, H.; Saak, C. C.; Malarney, K. P.; Thines, E.; Dutton, R. J.; Raffatellu, M.; Dorrestein, P. C.

10.1101/824888 — biochemistry — Posted on 2019-10-30

235 Reward Prediction Error Signaling during Reinforcement Learning in Social Anxiety Disorder is altered by Social Observation

Becker, M. P. I.; Voegler, R.; Peterburs, J.; Bellebaum, C.; Hofmann, D.; Straube, T.

10.1101/821512 — neuroscience — Posted on 2019-10-30

236 Attentional reorientation along the meridians of the visual field: are there different neural mechanisms at play?

Steinkamp, S. R.; Vossel, S.; Fink, G. R.; Weidner, R.

10.1101/816165 — neuroscience — Posted on 2019-10-30

237 Studying the precuneus reveals structure-function-affect correlation in long-term meditators

Berkovich-Ohana, A.; Furman-Haran, E.; Malach, R.; Arieli, A.; Harel, M.; Gilaie-Dotan, S.

10.1101/822056 — neuroscience — Posted on 2019-10-30

238 Dissociation between Frontal and Temporal-Parietal Contributions to Connected Speech in Acute Stroke

Ding, J.; Martin, R.; Hamilton, C.; Schnur, T. T.

10.1101/824300 — neuroscience — Posted on 2019-10-30

239 Cation-chloride cotransporters and the polarity of GABA signaling in mouse hippocampal parvalbumin interneurons

Otsu, Y.; Donneger, F.; Schwartz, E. J.; Poncer, J. C.

10.1101/823567 — neuroscience — Posted on 2019-10-30

240 DG-CA3 circuitry mediates hippocampal representations of latent information

Keinath, A. T.; Nieto-posadas, A.; Robinson, J. C.; Brandon, M. P.

10.1101/824102 — neuroscience — Posted on 2019-10-30

241 Loss of region-specific glial homeostatic signature in prion diseases

Makarava, N.; Chang, J. C.-Y.; Molesworth, K.; Baskakov, I. V.

10.1101/823732 — neuroscience — Posted on 2019-10-30

242 Spondweni virus causes fetal harm in a mouse model of vertical transmission and is transmitted by Aedes aegypti mosquitoes

Jaeger, A. S.; Weiler, A. M.; Moriarty, R. V.; Rybarczyk, S. L.; O'Connor, S. L.; O'Connor, D.; Seeling, D.; Fritsch, M.; Friedrich, T. C.; Aliota, M.

10.1101/824466 — microbiology — Posted on 2019-10-30

243 Evolution in novel environments: do restored prairie populations experience strong selection?

Magnoli, S. M.; Lau, J. A.

10.1101/824409 — evolutionary biology — Posted on 2019-10-30

244 The population and evolutionary dynamics of bacteriophage: Why be temperate revisited

Chaudhry, W.; Vega, N.; Govindan, A. R.; Garcia, R.; Lee, E.; McCall, I. C.; Levin, B. R.

10.1101/824235 — evolutionary biology — Posted on 2019-10-30

245 Chromatin structure changes in Daphnia populations upon exposure to environmental cues - or - The discovery of Wolterecks \"Matrix\"

de Carvalho Augusto, R.; Minoda, A.; Rey, O.; Cosseau, C.; Chaparro, C.; Vidal-Dupiol, J.; Allienne, J.-F.; Duval, D.; Pinaud, S.; Tonges, S.; Andriantsoa, R.; Luquet, E.; Aubret, F.; Sow, M. D.; David, P.; Thomson, V. A.; Federico, D.; Joly, D.; Lima, M.; Danchin, E.; Grunau, C.

10.1101/824789 — evolutionary biology — Posted on 2019-10-30

246 ANNUAL CYCLE DAMPENING AND THE DECREASE PREDICTABILITY OF WATER LEVEL FLUCTUATIONS IN A DAM-REGULATED NEOTROPICAL FLOODPLAIN

Zanon, J. E.

10.1101/824177 — ecology — Posted on 2019-10-30

247 A Recurrent Neural Network Based Method for Genotype Imputation on Phased Genotype Data

Kojima, K.; Tadaka, S.; Katsuoka, F.; Tamiya, G.; Yamamoto, M.; Kinoshita, K.

10.1101/821504 — bioinformatics — Posted on 2019-10-30

248 SECNVs: A Simulator of Copy Number Variants and Whole-Exome Sequences from Reference Genomes

Xing, Y.; Dabney, A. R.; Li, X.; Wang, G.; Gill, C. A.; Casola, C.

10.1101/824128 — bioinformatics — Posted on 2019-10-30

249 Charrs of the genus Salvelinus (Salmonidae): hybridization, phylogeny and evolution

Osinov, A. G.; Volkov, A. A.; Mugue, N. S.

10.1101/817775 — zoology — Posted on 2019-10-30

250 A single-sample circadian biomarker that performs across populations and platforms

Wu, G.; Ruben, M. D.; Francey, L. J.; Smith, D. F.; Sherrill, J. D.; Oblong, J. E.; Mills, K. J.; Hogenesch, J. B.

10.1101/820811 — systems biology — Posted on 2019-10-30

251 In planta bacterial multi-omics analysis illuminates regulatory principles underlying plant-pathogen interactions

Nobori, T.; Wang, Y.; Wu, J.; Stolze, S. C.; Tsuda, Y.; Finkemeier, I.; Nakagami, H.; Tsuda, K.

10.1101/822932 — plant biology — Posted on 2019-10-30

252 A functional spiking-neuron model of activity-silent working memory in humans based on calcium-mediated short-term synaptic plasticity

Pals, M.; Stewart, T. C.; Akyurek, E. G.; Borst, J. P.

10.1101/823559 — neuroscience — Posted on 2019-10-30

253 The intrinsic neonatal hippocampal network: rsfMRI findings

Howell, A. L.; Osher, D. E.; Li, J.; Saygin, Z. M.

10.1101/823500 — neuroscience — Posted on 2019-10-30

254 Cortical functional connectivity indexes arousal state during sleep and anesthesia

Banks, M. I.; Krause, B. M.; Endemann, C. M.; Campbell, D. I.; Kovach, C. K.; Dyken, M. E.; Kawasaki, H.; Nourski, K. V.

10.1101/823963 — neuroscience — Posted on 2019-10-30

255 Brain functional connectivity correlates of response in the 7.5% CO2 inhalational model of generalized anxiety disorder: a pilot study

Huneke, N. T.; Broulidakis, M. J.; Darekar, A.; Baldwin, D. S.; Garner, M.

10.1101/823617 — neuroscience — Posted on 2019-10-30

256 Distinct roles for DAT and COMT in regulating dopamine transients and reward-guided decision making

Korn, C.; Akam, T.; Jensen, K. H. R.; Vagnoni, C.; Huber, A.; Tunbridge, E. M.; Walton, M. E.

10.1101/823401 — neuroscience — Posted on 2019-10-30

257 The co-chaperone Fkbp5 shapes the acute stress response in the paraventricular nucleus of the hypothalamus

Häusl, A. S.; Hartmann, J.; Pöhlmann, M. L.; Brix, L. M.; Lopez, J.-P.; Brivio, E.; Engelhardt, C.; Roeh, S.; Rudolph, L.; Stoffel, R.; Hafner, K.; Gross, H. M.; Reul, J. M. H. M.; Deussing, J. M.; Ressler, K. J.; Gassen, N. C.; Chen, A.; Schmidt, M. V.

10.1101/824664 — neuroscience — Posted on 2019-10-30

258 Comparative Evaluation of Micronaut-AM and CLSI broth micro-dilution method for antifungal susceptibility testing of Aspergillus species against four commonly used antifungals

Nuh, A.; Ramadan, N.; Schelenz, S.; Armstrong-James, D.

10.1101/811901 — microbiology — Posted on 2019-10-30

259 Subcutaneous vaccination with a live attenuated Yersinia pseudotuberculosis plague vaccine

Derbise, A.; Guillas, C.; Gerke, C.; Carniel, E.; Pizarro Cerda, J.; Demeure, C. E.

10.1101/822221 — immunology — Posted on 2019-10-30

260 Incorporating genetic selection into individual-based models (IBMs) of malaria and other infectious diseases.

Hastings, I.; Sharma, R.

10.1101/819367 — evolutionary biology — Posted on 2019-10-30

261 On islands, evolutionary but not functional originality is rare

Veron, S.; Pellens, R.; Kondratyeva, A.; Grandcolas, P.; Govaerts, R.; Robuchon, M.; Mouchet, M.

10.1101/822064 — ecology — Posted on 2019-10-30

262 3D neural network-based particle tracking reveals spatial heterogeneity of the cytosol

McLaughlin, G. A.; Langdon, E. M.; Crutchley, J. M.; Holt, L. J.; Forest, M. G.; Newby, J. M.; Gladfelter, A. S.

10.1101/823286 — cell biology — Posted on 2019-10-30

263 RepCOOL: Computational Drug Repositioning Via Integrating Heterogeneous Biological Networks

Fahimian, G.; Zahiri, J.; Arab, S. S.; Hassan-Sajedi, R.

10.1101/817882 — bioinformatics — Posted on 2019-10-30

264 Bayesian Neural Networks for Cellular Image Classification and Uncertainty Analysis

Deodato, G.; Ball, C.; Zhang, X.

10.1101/824862 — bioinformatics — Posted on 2019-10-30

265 scATAC-pro: a comprehensive workbench for single-cell chromatin accessibility sequencing data

Yu, W.; Uzun, Y.; Zhu, Q.; Chen, C.; Tan, K.

10.1101/824326 — bioinformatics — Posted on 2019-10-30

266 Oxidative stress underlies heritable impacts of paternal cigarette smoke exposure

Murphy, P. J.; Guo, J.; Jenkins, T. G.; James, E. R.; Hoidal, J. R.; Huecksteadt, T.; Hotaling, J. M.; Carrell, D. T.; Cairns, B. R.; Aston, K. I.

10.1101/750638 — genetics — Posted on 2019-10-30

267 Homo-Oligomers in Signal Transduction: Dynamics, Homeostasis, Ultrasensitivity, Bistability

Koch, D.

10.1101/758789 — systems biology — Posted on 2019-10-30

268 A synthetic morphogenic membrane system that responds with self-organized shape changes to local light cues

Gavriljuk, K.; Scocozza, B.; Ghasemalizadeh, F.; Nandan, A. P.; Campos Medina, M.; Seidel, H.; Schmick, M.; Koseska, A.; Bastiaens, P.

10.1101/481887 — synthetic biology — Posted on 2019-10-30

269 Degradation of non-coding RNAs promotes recycling of termination factors at sites of transcription

Villa, T.; Barucco, M.; Martin-Niclos, M.-J.; Libri, D.

10.1101/822429 — molecular biology — Posted on 2019-10-30

270 Structural basis of UCUU RNA motif recognition by splicing factor RBM20

Upadhyay, S. K.; Mackereth, C. D.

10.1101/823351 — molecular biology — Posted on 2019-10-30

271 Messenger RNAs with large number of upstream ORFs are translated via leaky scanning and reinitiation in the asexual stages of Plasmodium falciparum

Kaur, C.; Kumar, M.; Patankar, S.

10.1101/823443 — molecular biology — Posted on 2019-10-30

272 TSA-Seq 2.0 reveals both conserved and variable chromosomal distances to nuclear speckles

Zhang, L.; Zhang, Y.; Chen, Y.; Gholamalamdari, O.; Ma, J.; Belmont, A. S.

10.1101/824433 — genomics — Posted on 2019-10-30

273 Steering Molecular Dynamics Simulations of Membrane-Associated Proteins with Neutron Reflection Results

Treece, B. W.; Heinrich, F.; Ramanathan, A.; Loesche, M.

10.1101/823740 — biophysics — Posted on 2019-10-30

274 Expert Curation of the Human and Mouse Olfactory Receptor Gene Repertoires Identifies Conserved Coding Regions Split Across Two Exons

Barnes, I. H.; Ibarra-Soria, X.; Fitzgerald, S.; Gonzalez, J. M.; Davidson, C.; Hardy, M. P.; Manthravadi, D.; Van Gerven, L.; Jorissen, M.; Zeng, Z.; Khan, M.; Mombaerts, P.; Harrow, J.; Logan, D. W.; Frankish, A.

10.1101/774612 — genomics — Posted on 2019-10-30

275 Transcriptomic signature of rapidly evolving immune genes in a highland fish

Tong, C.; Li, M.; Zhao, K.

10.1101/822866 — genomics — Posted on 2019-10-30

276 Population-specific causal disease effect sizes in functionally important regions impacted by selection

Shi, H.; Gazal, S.; Kanai, M.; Koch, E. M.; Schoech, A. P.; Kim, S. S.; Luo, Y.; Amariuta, T.; Okada, Y.; Raychaudhuri, S.; Sunyaev, S. R.; Price, A. L.

10.1101/803452 — genetics — Posted on 2019-10-30

277 A single nucleotide polymorphism of PLIN2 is associated with nonalcoholic steatohepatitis and causes phenotypic changes in hepatocyte lipid droplets

Faulkner, C. S.; White, C. M.; Jophlin, L. L.

10.1101/823450 — cell biology — Posted on 2019-10-30

278 Mathematical modeling the protective coloration of animals with usage of parameters of diversity and evenness

Bespalov, Y.; Nosov, K.; Levchenko, O.; Grigoriev, O.; Hnoievyi, I.

10.1101/822999 — systems biology — Posted on 2019-10-30

279 A specific exocytic pathway is essential for polarization of PIN proteins in the establishment and maintenance of auxin gradients.

Gu, X.; Fonseka, K.; Casson, S.; Smertenko, A.; Guo, G.; Topping, J. F.; Hussey, P. J.; Lindsey, K.

10.1101/821272 — plant biology — Posted on 2019-10-30

280 Efference copy is necessary for the attenuation of self-generated touch

Kilteni, K.; Engeler, P.; Ehrsson, H. H.

10.1101/823575 — neuroscience — Posted on 2019-10-30

281 Discovery of a prevalent picornavirus by visualizing zebrafish immune responses

Balla, K. M.; Rice, M. C.; Gagnon, J. A.; Elde, N. C.

10.1101/823989 — immunology — Posted on 2019-10-30

282 Territory acquisition mediates the influence of predators and climate on juvenile red squirrel survival

Hendrix, J. G.; Fisher, D. N.; Martinig, A. R.; Boutin, S.; Dantzer, B.; Lane, J. E.; McAdam, A. G.

10.1101/594036 — ecology — Posted on 2019-10-30

283 Tumor neoantigen heterogeneity thresholds provide a time window for combination immunotherapy

Gorgorio, G. A.; Sole, R.

10.1101/823856 — cancer biology — Posted on 2019-10-30

284 Cumulus: a cloud-based data analysis framework for large-scale single-cell and single-nucleus RNA-seq

Li, B.; Gould, J.; Yang, Y.; Sarkizova, S.; Tabaka, M.; Ashenberg, O.; Rosen, Y.; Slyper, M.; Kowalczyk, M. S.; Villani, A.-C.; Tickle, T.; Hacohen, N.; Rozenblatt-Rosen, O.; Regev, A.

10.1101/823682 — bioinformatics — Posted on 2019-10-30

285 RNA-spray-mediated silencing of Fusarium graminearum AGO and DCL genes improve barley disease resistance

Werner, B.; Gaffar, F. Y.; Schuemann, J.; Biedenkopf, D.; Koch, A.

10.1101/821868 — plant biology — Posted on 2019-10-30

286 Interaction of YAP with the Myb-MuvB (MMB) complex defines a transcriptional program to promote the proliferation of cardiomyocytes

Gründl, M.; Walz, S.; Hauf, L.; Schwab, M.; Werner, K. M.; Spahr, S.; Ade, C. P.; Gaubatz, S.

10.1101/824755 — molecular biology — Posted on 2019-10-30

287 Characterization of the genetic architecture underlying eye size variation within Drosophila melanogaster and Drosophila simulans

Gaspar, P.; Arif, S.; Sumner-Rooney, L.; Kittelmann, M.; Bodey, A. J.; Stern, D. L.; Nunes, M. D. S.; McGregor, A. P.

10.1101/555698 — evolutionary biology — Posted on 2019-10-30

288 The table-top visual search ability test for children and young people: normative response time data from typically developing children.

Waddington, J.; Pickering, J. S.; Hodgson, T.

10.1101/824672 — developmental biology — Posted on 2019-10-30

289 Integrating Transposable Elements in the 3D Genome

Bousios, A.; Nuetzmann, H.-W.; Buck, D.; Michieletto, D.

10.1101/823179 — biophysics — Posted on 2019-10-30

290 Linnaeus: Interpretable Deep Learning Classification of Single Cell Transcript Data

Prince, E. W.; Hankinson, T. C.

10.1101/822759 — bioinformatics — Posted on 2019-10-30

291 Heterogeneity in heat shock response dynamics caused by translation fidelity decline and proteostasis collapse

Vertti-Quintero, N.; Berger, S.; Casadevall i Solvas, X.; Statzer, C.; Annis, J.; Ruppen, P.; Stavrakis, S.; Ewald, C. Y.; Gunawan, R.; deMello, A.

10.1101/822072 — bioengineering — Posted on 2019-10-30

292 Scalable Spike Source Localization in Extracellular Recordings using Amortized Variational Inference

Hurwitz, C. L.; Xu, K.; Srivastava, A.; Buccino, A. P.; Hennig, M. H.

10.1101/656389 — neuroscience — Posted on 2019-10-30

293 Prevalence of beta-lactam drug-resistance genes in commensal Escherichia coli contaminating ready-to-eat lettuce

Liao, N.; Rubin, J.; Hu, Y.; Ramirez, H. A.; Araujo Borges, C.; Zhou, B.; Zhang, Y.; Zhang, R.; Jiang, J.; Riley, L. W.

10.1101/824516 — microbiology — Posted on 2019-10-30

294 B cells rapidly target antigen and surface-derived MHCII into peripheral degradative compartments.

Hernandez-Perez, S.; Vainio, M.; Kuokkanen, E.; Sustar, V.; Petrov, P.; Forsten, S.; Paavola, V.; Rajala, J.; Awoniyi, L.; Sarapulov, A.; Vihinen, H.; Jokitalo, E.; Bruckbauer, A.; Mattila, P.

10.1101/775882 — immunology — Posted on 2019-10-30

295 NHR-8 regulated P-glycoproteins uncouple xenobiotic stress resistance from longevity in chemosensory C. elegans mutants

Guerrero, G. A.; Schilling, K.; Mayr, F. A. M. C.; Lu, R.; Benayoun, B. A.; Denzel, M. S.

10.1101/823302 — genetics — Posted on 2019-10-30

296 Continent-wide effects of urbanization on bird and mammal genetic diversity

Schmidt, C.; Domaratzki, M.; Bowman, J.; Kinnunen, R. P.; Garroway, C. J.

10.1101/733170 — evolutionary biology — Posted on 2019-10-30

297 Insights from two decades of the Student Conference on Conservation Science

Geldmann, J.; Alves-Pinto, H.; Amano, T.; Bartlett, H.; Christie, A. P.; Collas, L.; Cooke, S. C.; Correa, R.; Cripps, I.; Doherty, A.; Finch, T.; Garnett, E. E.; Hua, F.; Jones, J. P. G.; Kasoar, T.; MacFarlane, D.; Martin, P. A.; Mukherjee, N.; Mumby, H. S.; Payne, C.; Petrovan, S. O.; Rocha, R.; Russell, K.; Simmons, B. I.; Wauchope, H.; Worthington, T. A.; Trevelyan, R.; Green, R.; Balmford, A.

10.1101/819623 — ecology — Posted on 2019-10-30

298 Heterogeneity of satellite cells implicates DELTA1/ NOTCH2 signaling in self-renewal

Yartseva, V.; Goldstein, L. D.; Rodman, J.; Kates, L.; Chen, M. Z.; Chen, Y.-J. J.; Foreman, O.; Siebel, C. W.; Modrusan, Z.; Peterson, A. S.; Jovicic, A.

10.1101/824359 — cell biology — Posted on 2019-10-30

299 Synchronous chromosome segregation in mouse oocytes is ensured by biphasic securin destruction and cyclin B1-Cdk1

Thomas, C.; Levasseur, M. D.; Harris, R. J.; Davies, O. R.; Madgwick, S.

10.1101/824763 — cell biology — Posted on 2019-10-30

300 Targeting Viperin to the Mitochondrion Inhibits the Thiolase Activity of the Trifunctional Enzyme Complex

Dumbrepatil, A. B.; Zegalia, K. A.; Sajja, K.; Kennedy, R. T.; Marsh, E. N. G.

10.1101/824425 — biochemistry — Posted on 2019-10-30

301 Fxr1 regulates sleep and synaptic homeostasis

Khlghatyan, J.; Evstratova, A.; Bozoyan, L.; Chamberland, S.; Marakhovskaia, A.; Soares Silva, T.; Toth, K.; Mongrain, V.; Beaulieu, J.-M.

10.1101/709345 — neuroscience — Posted on 2019-10-30

302 Dynamic preferences account for inter-animal variability during the continual learning of a cognitive task

Kastner, D. B.; Miller, E. A.; Yang, Z.; Roumis, D. K.; Liu, D. F.; Frank, L. M.; Dayan, P.

10.1101/808006 — neuroscience — Posted on 2019-10-30

303 mRNA structural dynamics shape Argonaute-target interactions

Ruijtenberg, S.; Sonneveld, S.; Cui, T. J.; Logister, I.; de Steenwinkel, D.; Xiao, Y.; MacRae, I. J.; Joo, C.; Tanenbaum, M. E.

10.1101/822452 — molecular biology — Posted on 2019-10-30

304 Cytokine and Growth Factor Response in a Rat Model of Radiation Induced Injury to the Submental Muscles

King, S. N.; Al-Quran, Z.; Hurley, J.; Wang, B.; Dunlap, N.

10.1101/823922 — molecular biology — Posted on 2019-10-30

305 Inference and effects of barcode multiplets in droplet-based single-cell assays

Lareau, C.; Duarte, F.; Ma, S.; Buenrostro, J. D.

10.1101/824003 — genomics — Posted on 2019-10-30

306 Mechanistic insight into crossing over during mouse meiosis

Peterson, S. E.; Keeney, S.; Jasin, M.

10.1101/824284 — genetics — Posted on 2019-10-30

307 Co-inhibition of BCL-XL and MCL-1 with BCL-2 selective inhibitors A1331852 and S63845 enhances cytotoxicity of cervical cancer cell lines

Abdul Rahman, S. F.; Muniandy, K.; Soo, Y. K.; Tiew, E. Y. H.; Tan, K. X.; Bates, T. E.; Mohana Kumaran, N.

10.1101/824649 — cancer biology — Posted on 2019-10-30

308 Molecular principles of Piezo1 activation by increased membrane tension

De Vecchis, D.; Beech, D. J.; Kalli, A. C.

10.1101/823518 — biophysics — Posted on 2019-10-30

309 Genetic identification of the functional surface for RNA binding by Escherichia coli ProQ

Pandey, S.; Gravel, C. M.; Stockert, O. M.; Wang, C. D.; Hegner, C. L.; LeBlanc, H.; Berry, K. E.

10.1101/822791 — biochemistry — Posted on 2019-10-30

310 G-protein coupled estradiol receptor 1 in dorsolateral striatum modulates cocaine preference in male rats

Quigley, J. A.; Becker, J. B.

10.1101/824078 — neuroscience — Posted on 2019-10-30

311 Proteolysis and neurogenesis modulated by LNR domain proteins explosion support male differentiation in the crustacean Oithona nana

Sugier, K.; Laso-Jadart, R.; Kerbache, S.; Kafer, J.; Arif, M.; Bertrand, L.; Labadie, K.; Martins, N.; Orvain, C.; Petit, E.; Poulain, J.; Wincker, P.; Jamet, J.-L.; Alberti, A.; Madoui, M.-A.

10.1101/818179 — molecular biology — Posted on 2019-10-30

312 Comparative microbiomes of three species of laboratory-reared Periplaneta cockroaches

Lee, S.; Kim, J. Y.; Yi, M.-h.; Lee, I.-Y.; Yong, T.-S.

10.1101/824524 — microbiology — Posted on 2019-10-30

313 HIV-1 accessory protein Vpr interacts with REAF and mitigates its associated antiviral 1 activity.

Gibbons, J. M.; Marno, K. M.; Pike, R.; Lee, W.-y. J.; Jones, C. E.; Ogunkolade, B. W.; Pardieu, C.; Bryan, A.; Fu, R. M.; Warnes, G.; Rowley, P. A.; Sloan, R. D.; McKnight, A.

10.1101/408161 — microbiology — Posted on 2019-10-30

314 HIV-1 Vpr Degrades TET2 to Suppress IRF7 and Interferon Expression in Plasmacytoid Dendritic Cells

Su, L.; Wang, Q.; Tsao, L.-c.; Lv, L.; Xiong, Y.; Cheng, L.; Yu, H.; Zhang, L.

10.1101/823328 — immunology — Posted on 2019-10-30

315 Reanalysis And Integration Of Public Microarray Datasets Reveals Novel Host Genes Modulated In Leprosy

Leal-Calvo, T.; Moraes, M. O.

10.1101/824805 — genomics — Posted on 2019-10-30

316 Polygenic and clinical risk scores and their impact on age at onset of cardiometabolic diseases and common cancers

Mars, N. J.; Koskela, J. T.; Ripatti, P.; Kiiskinen, T. T. J.; Havulinna, A. S.; Lindbohm, J. V.; Ahola-Olli, A.; Kurki, M.; Karjalainen, J.; Palta, P.; FinnGen, ; Neale, B. M.; Daly, M.; Salomaa, V.; Palotie, A.; Widen, E.; Ripatti, S.

10.1101/727057 — genomics — Posted on 2019-10-30

317 Investigating the influence of environment on the evolution of Hsp90 using comprehensive fitness maps

Flynn, J. M.; Bolon, D. N. A.; Rossouw, A.; Cote-Hammarlof, P. A.; Fragata, I.; Mavor, D.; Hollins, C.; Bank, C.

10.1101/823468 — evolutionary biology — Posted on 2019-10-30

318 Honey bee pollen foraging ecology across an urbanization gradient

Richardson, R. T.; Eaton, T. D.; Lin, C.-H.; Cherry, G.; Johnson, R. M.; Sponsler, D. B.

10.1101/824474 — ecology — Posted on 2019-10-30

319 A role for keratins in supporting mitochondrial organization and function in skin keratinocytes

Steen, K.; Chen, D.; Wang, F.; Majumdar, R.; Chen, S.; Kumar, S.; Lombard, D. B.; Weigert, R.; Parent, C. A.; Coulombe, P. A.

10.1101/822403 — cell biology — Posted on 2019-10-30

320 Keratin 14-dependent disulfides regulate epidermal homeostasis and barrier function via 14-3-3sigma and YAP1

Guo, Y.; Leacock, K. A.; Redmond, C.; Jaskula-Ranga, V.; Coulombe, P. A.

10.1101/824219 — cell biology — Posted on 2019-10-30

321 Tumour suppressor WT1 regulates the let-7-Igf1r axis in kidney mesenchyme

Bharathavikru, R.; Slight, J.; Aitken, S.; Petrovich, G.; Charlton, J.; Stancheva, V.; Essafi, A.; Pritchard Jones, K.; Hastie, N.

10.1101/822973 — cancer biology — Posted on 2019-10-30

322 Ageing Transcriptome Meta-Analysis Reveals Similarities Between Key Mammalian Tissues

Palmer, D.; Fabris, F.; Doherty, A.; Freitas, A. A.; de Magalhaes, J. P.

10.1101/815381 — bioinformatics — Posted on 2019-10-30

323 Restriction enzymes use a 24 dimensional coding space to recognize 6 base long DNA sequences

Schneider, T. D.; Jejjala, V.

10.1101/538025 — bioinformatics — Posted on 2019-10-30

324 Reduced speaking-induced suppression of auditory evoked-potentials in early Parkinson’s disease suggests deficits in monitoring self-produced speech

Railo, H.; Nokelainen, N.; Savolainen, S.; Kaasinen, V.

10.1101/823674 — neuroscience — Posted on 2019-10-30

325 Dopamine gates prediction error forwarding in the cortices of the inferior colliculus

Valdes-Baizabal, C.; Guillermo, C. V.; Perez-Gonzalez, D.; Malmierca, M. S.

10.1101/824656 — neuroscience — Posted on 2019-10-30

326 A novel antiviral lncRNA EDAL shields a T309 O-GlcNAcylation site to promote EZH2 degradation

Zhao, L.; Sui, B.; Chen, D.; Liu, W.; Wu, Q.; Tian, B.; Hou, J.; Li, Y.; Liu, S.; Xie, J.; Jiang, H.; Luo, Z.; Lv, L.; Huang, F.; Li, R.; Cui, M.; Zhou, M.; Chen, H.; Fu, Z. F.; Zhang, Y.

10.1101/824813 — microbiology — Posted on 2019-10-30

327 Pooled CRISPRi screening of the cyanobacterium Synechocystis sp. PCC 6803 for enhanced growth, tolerance, and chemical production

Yao, L.; Shabestary, K.; Björk, S. M.; Asplund-Samuelsson, J.; Joensson, H. N.; Jahn, M.; Hudson, E. P.

10.1101/823534 — microbiology — Posted on 2019-10-30

328 Trem-2 promotes emergence of restorative macrophages and endothelial cells during recovery from hepatic tissue damage.

Coelho, I.; Duarte, N.; Barros, A.; Macedo, M. P.; Penha-Goncalves, C.

10.1101/823773 — immunology — Posted on 2019-10-30

329 Epidermal green autofluorescence intensity is significantly associated with the serum levels of multiple cytokines of LPS-exposed mice

Li, Y.; Zhang, M.; Yang, Z.; Ying, W.

10.1101/823062 — immunology — Posted on 2019-10-30

330 Genome-wide identification of genes regulating DNA methylation using genetic anchors for causal inference

Hop, P. J.; Luijk, R.; Daxinger, L.; van Iterson, M.; Dekkers, K. F.; Jansen, R.; BIOS Consortium, ; van Meurs, J. B. J.; 't Hoen, P. A. C.; Ikram, M. A.; van Greevenbroek, M. M. J.; Boomsma, D. I.; Slagboom, P. E.; Veldink, J. H.; van Zwet, E. W.; Heijmans, B. T.

10.1101/823807 — genomics — Posted on 2019-10-30

331 Evaluation of sequencing strategies for whole-genome imputation with hybrid peeling

Ros-Freixedes, R.; Whalen, A.; Gorjanc, G.; Mileham, A. J.; Hickey, J. M.

10.1101/824631 — genomics — Posted on 2019-10-30

332 ZCWPW1 is recruited to recombination hotspots by PRDM9, and is essential for meiotic double strand break repair

Wells, D.; Bitoun, E.; Moralli, D.; Zhang, G.; Hinch, A. G.; Donnelly, P.; Green, C.; Myers, S. R.

10.1101/821678 — genetics — Posted on 2019-10-30

333 Plant budding speciation predominant by ecological and geographical differentiation: an ‘evolutionary snapshot’ in Iberodes (Boraginaceae)

Otero, A.; Vargas, P.; Valcarcel, V.; Fernandez-Mazuecos, M.; Jimenez-Mejias, P.; Hipp, A. L.

10.1101/823641 — evolutionary biology — Posted on 2019-10-30

334 Synergism of gut microbiota to double-stranded RNAs in RNA interference of a leaf beetle

Xu, L.; Xu, S.; Sun, L.; Zhang, Y.; Jing, L.; Bock, R.; Zhang, J.

10.1101/824581 — ecology — Posted on 2019-10-30

335 Phenotypic diversity of Methylobacterium associated with rice landraces in Northeast India

Sanjenbam, P.; Buddidathi, R.; Venkatesan, R.; Shivaprasad, P. V.; Agashe, D.

10.1101/823195 — ecology — Posted on 2019-10-30

336 HDAC6 promotes self-renewal and migration/invasion of rhabdomyosarcoma

Chen, E.; Pham, T. Q.; Robinson, K.; Xu, L.; Skapek, S. X.

10.1101/823864 — cancer biology — Posted on 2019-10-30

337 Characterizing chromatin folding coordinate and landscape with deep learning

Xie, W. J.; Qi, Y.; Zhang, B.

10.1101/824417 — biophysics — Posted on 2019-10-30

338 Mechanics of snake biting: Experiments and modelling

Kundanati, L.; Guarino, R.; Menegon, M.; Pugno, N. M.

10.1101/815407 — bioengineering — Posted on 2019-10-30

339 Non-selective response inhibition during an equal probability Go/NoGo task: Bayesian analysis of fMRI data

Masharipov, R.; Kireev, M.; Korotkov, A.; Medvedev, S.

10.1101/823625 — neuroscience — Posted on 2019-10-30

340 Transcription-driven cohesin repositioning rewires chromatin loops in cellular senescence

Olan, I.; Parry, A. J.; Schoenfelder, S.; Narita, M.; Ito, Y.; Chan, A. S.; Slater, G. S. C.; Bihary, D.; Bando, M.; Shirahige, K.; Kimura, H.; Samarajiwa, S. A.; Fraser, P.; Narita, M.

10.1101/823831 — molecular biology — Posted on 2019-10-30

341 Structural insight into the formation of lipoprotein-β-barrel complexes by the β-barrel assembly machinery

Letoquart, J.; Rodriguez-Alonso, R.; Nguyen, V. S.; Louis, G.; Calabrese, A. N.; Radford, S. E.; Cho, S.-H.; Remaut, H.; Collet, J.-F.

10.1101/823146 — microbiology — Posted on 2019-10-30

342 Combining whole genome shotgun sequencing and rDNA amplicon analyses to improve detection of microbe-microbe interaction networks in plant leaves

Regalado, J.; Lundberg, D. S.; Deusch, O.; Kersten, S.; Karasov, T. L.; Poersch, K.; Shirsekar, G.; Weigel, D.

10.1101/823492 — genomics — Posted on 2019-10-30

343 Pan-transcriptome-based Candidate Therapeutic Discovery for Idiopathic Pulmonary Fibrosis

Wang, Y.; Yella, J. K.; Ghandikota, S.; Cherukuri, T. C.; Madala, S. K.; Jegga, A. G.

10.1101/824367 — genomics — Posted on 2019-10-30

344 PopInf: An approach for reproducibly visualizing and assigning population affiliation in genomic samples of uncertain origin

Taravella Oill, A. M.; Deshpande, A.; Natri, H. M.; Wilson, M. A.

10.1101/823344 — genomics — Posted on 2019-10-30

345 More than DNA methylation: does pleiotropy drive the complex pattern of evolution of Dnmt1?

Amukamara, A. U.; Washington, J. T.; Sanchez, Z.; Mckinney, E. C.; Moore, A. J.; Schmitz, R. J.; Moore, P. J.

10.1101/824052 — evolutionary biology — Posted on 2019-10-30

346 Trophic complexity alters the diversity-multifunctionality relationship in experimental grassland mesocosms

Anujan, K.; Heilpern, S. A.; Prager, C. M.; Weeks, B. C.; Naeem, S.

10.1101/525881 — ecology — Posted on 2019-10-30

347 Feedback control of morphogen gradient scale

Zhu, Y.; Qiu, Y.; Chen, W.; Nie, Q.; Lander, A. D.

10.1101/824292 — developmental biology — Posted on 2019-10-30

348 H2A.Z is dispensable for both basal and activated transcription in post-mitotic mouse muscles

Belotti, E.; Lacoste, N.; Simonet, T.; Papin, C.; Padmanabhan, K.; Ramos, L.; Dalkara, D.; Scionti, I.; Hamiche, A.; Dimitrov, S.; Schaeffer, L.

10.1101/823526 — cell biology — Posted on 2019-10-30

349 Oxidised phosphatidylcholines induce multiple functional defects in airway epithelial cells

Pascoe, C. D.; Roy, N.; Turner-Brannen, E.; Schultz, A.; Stelmack, G.; Halayko, A. J.; West, A. R.

10.1101/823666 — cell biology — Posted on 2019-10-30

350 The Interaction of Viperin with Hepatitis C Virus Non-Structural Protein 5A Inhibits the Catalytic Activity of Viperin

Ghosh, S.; Patel, A. M.; Grunkemeyer, T. J.; Dumbrepatil, A. B.; Zagalia, K.; Kennedy, R. T.; Marsh, E. N. G.

10.1101/824458 — biochemistry — Posted on 2019-10-30

351 Resveratrol attenuates high-fat diet-induced obesity and the aging-related sarcopenia mitochondrial dysfunction in skeletal muscle.

Wu, J.-P.; Alizargar, J.; Bai, C.-H.

10.1101/823088 — animal behavior and cognition — Posted on 2019-10-30

352 Transcriptome-guided parsimonious flux analysis improves predictions with metabolic networks in complex environments

Jenior, M. L.; Moutinho, T.; Papin, J. A.

10.1101/637124 — systems biology — Posted on 2019-10-30

353 Characterizing the dynamic and functional DNA methylation landscape in the developing human cortex

Perzel Mandell, K. A.; Price, A. J.; Wilton, R.; Collado Torres, L.; Tao, R.; Eagles, N. J.; Szalay, A. S.; Hyde, T. M.; Weinberger, D.; Kleinman, J. E.; Jaffe, A. E.

10.1101/823781 — neuroscience — Posted on 2019-10-30

354 Presynaptic development is controlled by the core active zone proteins CAST/ELKS

Radulovic, T.; Dong, W.; Goral, R. O.; Thomas, C. I.; Veeraraghavan, P.; Montesinos, M. S.; Guerrero-Given, D.; Goff, K.; Luebbert, M.; Kamasawa, N.; Ohtuska, T.; Young, S. M.

10.1101/823542 — neuroscience — Posted on 2019-10-30

355 MEF2C hypofunction in neuronal and neuroimmune populations cooperate to produce MEF2C haploinsufficiency syndrome-like behaviors in mice

Harrington, A. J.; Bridges, C. M.; Blankenship, K.; Assali, A.; Berto, S.; Siemsen, B. M.; Moore, H. W.; Cho, J. Y.; Tsvetkov, E.; Thielking, A.; Konopka, G.; Everman, D. B.; Scofield, M.; Skinner, S. A.; Cowan, C. W.

10.1101/824151 — neuroscience — Posted on 2019-10-30

356 Signal-space projection suppresses the tACS artifact in EEG recordings

Vosskuhl, J.; Mutanen, T. P.; Neuling, T.; Ilmoniemi, R. J.; Herrmann, C. S.

10.1101/823153 — neuroscience — Posted on 2019-10-30

357 CreLite: An Optogenetically Controlled Cre/loxP System Using Red Light

Yen, S.-T.; Trimmer, K. A.; Aboul, N.; Mullen, R. D.; Culver, J. C.; Dickinson, M. E.; Behringer, R. R.; Eisenhoffer, G. T.

10.1101/823971 — molecular biology — Posted on 2019-10-30

358 Refined mechanism of Mycoplasma mobile gliding based on structure, ATPase activity, and sialic acid binding of machinery

Nishikawa, M. S.; Daisuke, N.; Toyonaga, T.; Kawamoto, A.; Kato, T.; Namba, K.; Miyata, M.

10.1101/823039 — microbiology — Posted on 2019-10-30

359 The circadian clock and darkness control natural competence in cyanobacteria

Taton, A.; Erikson, C.; Yang, Y.; Rubin, B. E.; Rifkin, S. A.; Golden, J. W.; Golden, S. S.

10.1101/822627 — microbiology — Posted on 2019-10-30

360 TRIM34 acts with TRIM5 to restrict HIV and SIV capsids

Ohainle, M.; Kim, K.; Keceli, S.; Felton, A.; Campbell, E. M.; Luban, J.; Emerman, M.

10.1101/820886 — microbiology — Posted on 2019-10-30

361 Chromatin-based techniques map DNA interaction landscapes in psoriasis susceptibility loci and highlight KLF4 as a target gene in 9q31

Eyre, S.; Ray-Jones, H.; Duffus, K.; McGovern, A.; Martin, P.; Shi, C.; Hankinson, J.; Gough, O.; Yarwood, A.; Morris, A.; Adamson, A.; Taylor, C.; Ding, J.; Gaddi, P.; Fu, Y.; Gaffney, P.; Orozco, G.; Warren, R.

10.1101/822304 — genomics — Posted on 2019-10-30

362 Genetic analysis of Aedes aegypti captured in two international airports serving the Greater Tokyo area during 2012-2015

Itokawa, K.; Hu, J.; Sukehiro, N.; Tsuda, Y.; Komagata, O.; Kasai, S.; Tomita, T.; Minakawa, N.; Sawabe, K.

10.1101/823138 — genetics — Posted on 2019-10-30

363 Genomic features of BRDT binding sites in gene units suggest transcriptional partners and specific epigenetic landscapes to regulate transcriptional activity during spermatogenesis

Wang, L.; Chepelev, I.; Her, Y. R.; Manterola, M.; Berkovits, B.; Cui, K.; Zhao, K.; Wolgemuth, D. J.

10.1101/822874 — developmental biology — Posted on 2019-10-30

364 ER transmembrane protein TMTC3 contributes to O-mannosylation of E-cadherin, Cellular Adherence and Embryonic Gastrulation

Graham, J. B.; Sunryd, J. C.; Mathavan, K.; Weir, E.; Larsen, I. S. B.; Halim, A.; Clausen, H.; Cousin, H.; Alfandari, D.; Hebert, D. N.

10.1101/822270 — cell biology — Posted on 2019-10-30

365 Soluble cyanobacterial carotenoprotein as a robust antioxidant nanocarrier and delivery module

Maksimov, E. G.; Zamaraev, A. V.; Parshina, E. Y.; Slonimskiy, Y. B.; Slastnikova, T. A.; Abdrakhmanov, A. A.; Babaev, P. A.; Efimova, S. S.; Ostroumova, O. S.; Stepanov, A. V.; Ryabova, A. V.; Friedrich, T. G.; Sluchanko, N. N.

10.1101/823880 — biophysics — Posted on 2019-10-30

366 CRISPR-Cas12a-assisted PCR tagging of mammalian genes

Fueller, J.; Herbst, K.; Meurer, M.; Gubicza, K.; Kurtulmus, B.; Knopf, J. D.; Kirrmaier, D.; Buchmuller, B.; Pereira, G.; Lemberg, M. K.; Knop, M.

10.1101/473876 — cell biology — Posted on 2019-10-30

367 Innate Antifungal Immune Receptor, Dectin-1, Undergoes Ligand-Induced Oligomerization with Highly Structured β-Glucans and at Fungal Cell Contact Sites

Anaya, E. U.; Etemadi Amin, A.; Danielson, M.; Michel, K.; Neumann, A. K.

10.1101/824995 — immunology — Posted on 2019-10-30

368 Whole-genome duplication and host genotype affect rhizosphere microbial communities in Arabidopsis thaliana

Bennett Ponsford, J. C.; Hubbard, C. J.; Harrison, J. G.; Maignien, L.; Buerkle, C. A.; Weinig, C.

10.1101/822726 — plant biology — Posted on 2019-10-30

369 Differential expression of five prosomatostatin genes in the central nervous system of the catshark Scyliorhinus canicula

Sobrido-Camean, D.; Tostivint, H.; Mazan, S.; Rodicio, M. C.; Rodriguez-Moldes, I.; Candal, E.; Anadon, R.; Barreiro-Iglesias, A.

10.1101/823187 — neuroscience — Posted on 2019-10-30

370 Fitness differences, not niche differences, limit species richness

Spaak, J. W.; Carpentier, C.; De Laender, F.

10.1101/823070 — ecology — Posted on 2019-10-30

371 Genome-wide Analysis In Response to N and C Identifies New Regulators for root AtNRT2 Transporters

Ruffel, S.; Chaput, V.; Przybyla-Toscano, J.; Fayos, I.; Ibarra, C.; Moyano, T. C.; Fizames, C.; Tillard, P.; O'Brien, J. A.; Gutierrez, R. A.; Gojon, A.; Lejay, L.

10.1101/822197 — plant biology — Posted on 2019-10-30

372 Revisiting Australian Ectocarpus subulatus (Phaeophyceae) from the Hopkins River: distribution, abiotic environment, and associated microbiota

Dittami, S. M.; Peters, A. F.; West, J.; Cariou, T.; KleinJan, H.; Burgunter-Delamare, B.; Prechoux, A.; Egan, S.; Boyen, C.

10.1101/821579 — plant biology — Posted on 2019-10-30

373 A widespread family of heat-resistant obscure (Hero) proteins protect against protein instability and aggregation

Tsuboyama, K.; Osaki, T.; Matsuura-Suzuki, E.; Kozuka-Hata, H.; Okada, Y.; Oyama, M.; Ikeuchi, Y.; Iwasaki, S.; Tomari, Y.

10.1101/816124 — molecular biology — Posted on 2019-10-30

374 New roles for two-component system response regulators of Salmonella enterica serovar Typhi during host cell interactions

Murret-Labarthe, C.; Kerhoas, M.; Dufresne, K.; Daigle, F.

10.1101/820332 — microbiology — Posted on 2019-10-30

375 Intercellular transmission of a bacterial cytotoxic prion-like protein in mammalian cells

Revilla-Garcia, A.; Fernandez, C.; Moreno-del Alamo, M.; de los Rios, V.; Vorberg, I.; Giraldo, R.

10.1101/821215 — microbiology — Posted on 2019-10-30

376 Polarly localized EccE1is required for ESX-1 function and stabilization of ESX-1 membrane proteins in Mycobacterium tuberculosis

Soler-Arnedo, P.; Sala, C.; Zhang, M.; Cole, S. T.; Piton, J.

10.1101/820324 — microbiology — Posted on 2019-10-30

377 Stochastic sampling provides a unifying account of working memory limits

Schneegans, S.; Taylor, R.; Bays, P.

10.1101/771071 — neuroscience — Posted on 2019-10-30

378 High efficiency blood-brain barrier transport using a VNAR targeting the Transferrin Receptor 1 (TfR1)

Stocki, P.; Szary, J. M.; Jacobsen, C. L.; Demydchuk, M.; Northall, L.; Moos, T.; Walsh, F. S.; Rutkowski, J. L.

10.1101/816900 — neuroscience — Posted on 2019-10-30

379 Evidence for widespread selection in shaping the genomic landscape during speciation of Populus

Wang, J.; Street, N.; Park, E.-J.; Ingvarsson, P. K.; Liu, J.

10.1101/819219 — evolutionary biology — Posted on 2019-10-30

380 M2IA: a Web Server for Microbiome and Metabolome Integrative Analysis

Ni, Y.; Yu, G.; Chen, H.; Deng, Y.; Wells, P. M.; Steves, C. J.; Ju, F.; Fu, J.

10.1101/678813 — bioinformatics — Posted on 2019-10-30

381 Computational redesign of a PETase for plastic biodegradation by the GRAPE strategy

Cui, Y.; Chen, Y.; Liu, X.; Dong, S.; Tian, Y.; Qiao, Y.; Han, J.; Li, C.; Han, X.; Liu, W.; Chen, Q.; Du, W.; Tang, S.; Xiang, H.; Liu, H.; Wu, B.

10.1101/787069 — synthetic biology — Posted on 2019-10-30

382 The functional organization of excitation and inhibition in the dendritic arbors of retinal direction-selective ganglion cells

Jain, V.; Murphy-Baum, B. L.; deRosenroll, G.; Sethuramanujam, S.; Delsey, M.; Delaney, K.; Awatramani, G.

10.1101/718783 — neuroscience — Posted on 2019-10-30

383 Peptidoglycan layer and disruption processes in Bacillus subtilis cells visualized using quick-freeze, deep-etch electron microscopy

Tulum, I.; Tahara, Y. O.; Miyata, M.

10.1101/600171 — microbiology — Posted on 2019-10-30

384 A systems-biology approach to molecular machines: Exploration of alternative transporter mechanisms

George, A.; Bisignano, P.; Rosenberg, J.; Grabe, M.; Zuckerman, D. M.

10.1101/685933 — biophysics — Posted on 2019-10-30

385 CarbMetSim: A Discrete-Event Simulator for Carbohydrate Metabolism in Humans

Goyal, M.; Aydas, B.; Ghazaleh, H.; Rajasekharan, S.

10.1101/491019 — bioinformatics — Posted on 2019-10-30

386 Monkeys and Humans Implement Causal Inference to Simultaneously Localize Auditory and Visual Stimuli

Mohl, J. T.; Pearson, J. M.; Groh, J. M.

10.1101/823385 — neuroscience — Posted on 2019-10-29

387 Dasatinib Plus Quercetin on Uterine Age-Related Dysfunction and Fibrosis in Mice

Cavalcante, M. B.; Saccon, T. D.; Nunes, A. D. C.; Kirkland, J. L.; Tchkonia, T.; Schneider, A.; Masternak, M. M.

10.1101/823229 — molecular biology — Posted on 2019-10-29

388 Dynamic-ultrastructural cell volume (3D) correlative microscopy facilitated by intracellular fluorescent nanodiamonds as multi-modal probes

Prabhakar, N.; Belevich, I.; Peurla, M.; Heiligenstein, X.; Chang, H.-C.; Sahlgren, C.; Jokitalo, E.; Rosenholm, J.

10.1101/823278 — cell biology — Posted on 2019-10-29

389 Replacing murine insulin 1 with human insulin protects NOD mice from diabetes

Elso, C.; Scott, N.; Mariana, L.; Masterman, E.; Sutherland, A.; Thomas, H.; Mannering, S. I.

10.1101/823393 — immunology — Posted on 2019-10-29

390 Bone morphogenetic protein 9 induces osteogenic differentiation of germ cell 1 spermatogonial cells

Zhang, J.; Xu, B.; Chen, X.; Zhao, L.; Zhang, P.; Wang, F.; Li, X.; Wang, M.; Xu, W.; Wenwen, W.; Fu, S.

10.1101/823435 — cell biology — Posted on 2019-10-29

391 Does training method matter?: Evidence for the negative impact of aversive-based methods on companion dog welfare

Vieira de Castro, A. C.; Fuchs, D.; Pastur, S.; de Sousa, L.; Olsson, A.

10.1101/823427 — animal behavior and cognition — Posted on 2019-10-29

392 Dimensionality, information and learning in prefrontal cortex

Bartolo-Orozco, R.; Saunders, R.; Mitz, A.; Averbeck, B. B.

10.1101/823377 — neuroscience — Posted on 2019-10-29

393 Relationship between True Digestibility of dietary Phosphorus and Gastrointestinal Bacteria of Goats

Wang, L.; Shah, A. M.; Liu, Y.; Jin, L.; Wang, Z.; Xue, B.; Peng, Q.

10.1101/823237 — microbiology — Posted on 2019-10-29

394 Microsatellite instability as a tool to diagnose genome instability in CHO cell culture

Chitwood, D. G.; Wang, Q.; Elliott, K.; Bullock, A.; Jordana, D.; Li, Z.; Wu, C.; Harcum, S. W.; Saski, C. A.

10.1101/823252 — genomics — Posted on 2019-10-29

395 The impact of respiratory gating on improving volume measurement of murine lung tumors in micro-CT imaging

Blocker, S. J.; Holbrook, M. D.; Mowery, Y. M.; Sullivan, D. C.; Badea, C.

10.1101/823245 — cancer biology — Posted on 2019-10-29

396 Towards implementation of AI in New Zealand national screening program: Cloud-based, Robust, and Bespoke

Xie, L.; Yang, S.; Squirrell, D.; Vaghefi, E.

10.1101/823260 — bioengineering — Posted on 2019-10-29

397 Shared neural resources of rhythm and syntax: An ALE Meta-Analysis

Heard, M.; Lee, Y. S.

10.1101/822676 — neuroscience — Posted on 2019-10-29

398 Flexible coordinator and switcher hubs for adaptive task control

Cocuzza, C. V.; Ito, T.; Schultz, D. H.; Bassett, D. S.; Cole, M. W.

10.1101/822213 — neuroscience — Posted on 2019-10-29

399 Mitochondrial pyruvate carrier is required for optimal brown fat thermogenesis

Panic, V.; Pearson, S.; Banks, J.; Tippetts, T. S.; Lee, S.; Simcox, J.; Geoghegan, G.; Bensard, C.; van Ry, T.; Holland, W. L.; Summers, S.; Cox, J.; Ducker, G.; Rutter, J.; Villanueva, C.

10.1101/823799 — biochemistry — Posted on 2019-10-29

400 Quantitative Measurements of Enlarged Perivascular Spaces in the Brain are Associated with Retinal Microvascular Parameters in Older Community-Dwelling Subjects

Ballerini, L.; McGrory, S.; Valdes-Hernandez, M.; Lovreglio, R.; Pellegrini, E.; MacGillivray, T.; Munoz Maniega, S.; Henderson, R.; Taylor, A.; Bastin, M.; Trucco, E.; Deary, I.; Wardlaw, J.

10.1101/822155 — neuroscience — Posted on 2019-10-29

401 Host-microbiome protein-protein interactions capture mechanisms in human disease

Beltran, J. F.; Brito, I.

10.1101/821926 — microbiology — Posted on 2019-10-29

402 Interlaboratory Data Variability Contributes to the Differential Principal Components of Human Primed and Naïve-like Pluripotent States in Multivariate Meta-Analysis

Johnson, K. R.; Mallon, B. S.; Fann, Y. C.; Chen, K. G.

10.1101/822163 — bioinformatics — Posted on 2019-10-29

403 High-phytate/low-calcium diet is a risk factor for crystal nephropathies, renal phosphate wasting, and bone loss

Kim, O.-H.; Booth, C. J.; Choi, H. S.; Lee, J.; Kang, J.; Hur, J.; Choi, H. J.; Kim, H.; Auh, J.-H.; Cha, J.-Y.; Lee, Y. J.; Lee, C. S.; Choi, C.; Yang, J.-y.; Im, S.-S.; Lee, D. H.; Cho, S. W.; Kim, Y.-B.; Park, K. S.; Park, Y. J.; Oh, B.-C.

10.1101/816512 — physiology — Posted on 2019-10-29

404 Cerebellar lesions disrupt spatial and temporal visual attention.

Craig, B. T.; Morrill, A.; Anderson, B.; Danckert, J.; Striemer, C. L.

10.1101/822635 — neuroscience — Posted on 2019-10-29

405 Broadband Signal Rather than Frequency-Specific Rhythms Underlies Prediction Error in the Primate Auditory Cortex

Canales-Johnson, A.; Teixeira Borges, A. F.; Komatsu, M.; Fujii, N.; Fahrenfort, J. J.; Miller, K. J.; Noreika, V.

10.1101/821942 — neuroscience — Posted on 2019-10-29

406 Methionyl-tRNA synthetase inhibitor has potent in vivo activity in a novel Giardia lamblia luciferase murine infection model

Michaels, S. A.; Shih, H.-W.; Zhang, B.; Navaluna, E. D.; Zhang, Z.; Ranade, R. M.; Gillespie, J. R.; Merritt, E. A.; Fan, E.; Buckner, F. S.; Paredez, A. R.; Ojo, K. K.

10.1101/822924 — microbiology — Posted on 2019-10-29

407 Characterization of C. difficile strains isolated from companion animals and the associated changes in the host fecal microbiota

Thanissery, R.; McLaren, M. R.; Rivera, A.; Reed, A. D.; Betrapally, N. S.; Burdette, T.; Winston, J. A.; Jacob, M.; Callahan, B. J.; Theriot, C. M.

10.1101/822577 — microbiology — Posted on 2019-10-29

408 A complex virome that includes two distinct emaraviruses is associated to virus-like symptoms in Camellia japonica

Peracchio, C.; Forgia, M.; Chiapello, M.; Vallino, M.; Turina, M.; Ciuffo, M.

10.1101/822254 — microbiology — Posted on 2019-10-29

409 Validation of a high-performance liquid chromatography-tandem mass spectrometry immunopeptidomics assay for the identification of HLA class I ligands suitable for pharmaceutical therapies

Ghosh, M.; Gauger, M.; Marcu, A.; Nelde, A.; Denk, M.; Schuster, H.; Rammensee, H.-G.; Stevanovic, S.

10.1101/821249 — immunology — Posted on 2019-10-29

410 Mapping sequences can bias population receptive field estimates

Infanti, E.; Schwarzkopf, D. S.

10.1101/821918 — neuroscience — Posted on 2019-10-29

411 Decoding and modulating multiregional communication in the mood processing network

Qiao, S.; Sedillo, J. I.; Brown, K. A.; Ferrentino, B.; Pesaran, B.

10.1101/731547 — neuroscience — Posted on 2019-10-29

412 Identification of a missense ARSA mutation in metachromatic leukodystrophy and its potential pathogenic mechanism

Guo, L.; Jin, B.; Zhang, Y.; Wang, J.

10.1101/822890 — genetics — Posted on 2019-10-29

413 Attentive red squirrel mothers have faster-growing pups and higher lifetime reproductive success

Westrick, S. E.; Taylor, R. W.; Boutin, S.; Lane, J. E.; McAdam, A. G.; Dantzer, B.

10.1101/594093 — evolutionary biology — Posted on 2019-10-29

414 Defective Nucleotide Catabolism Defines a Subset of Cancers Sensitive to Purine Nucleoside Phosphorylase Inhibition

Abt, E. R.; Lok, V.; Poddar, S.; Le, T. M.; Kim, W.; Capri, J. R.; Abril-Rodriguez, G.; Ribas, A.; Czernin, J.; Donahue, T. R.; Radu, C. G.

10.1101/810093 — cancer biology — Posted on 2019-10-29

415 Mechanism and site of action of big dynorphin on ASIC1a

Borg, C. B.; Braun, N.; Heusser, S. A.; Bay, Y.; Weis, D.; Galleano, I.; Lund, C.; Tian, W.; Haugaard-Kedstroem, L. M.; Bennett, E. P.; Lynagh, T.; Stromgaard, K.; Andersen, J.; Pless, S.

10.1101/816264 — biophysics — Posted on 2019-10-29

416 A comparative analysis among ADAR mutant mice reveals site-specific regulation of RNA editing

Costa Cruz, P. H.; Kato, Y.; Nakahama, T.; Shibuya, T.; Kawahara, Y.

10.1101/822916 — molecular biology — Posted on 2019-10-29

417 Multiple Low Dose therapy: an effective strategy to treat EGFR inhibitor-resistant NSCLC tumours

Fernandes Neto, J. M.; Nadal, E.; Ooft, S. N.; Bosdriesz, E.; Farre, L.; McLean, C.; Klarenbeek, S.; Jurgens, A.; Hagen, H.; Wang, L.; Felip, E.; Martinez-Marti, A.; Voest, E.; Wessels, L.; van Tellingen, O.; Villanueva, A.; Bernards, R.

10.1101/821975 — cancer biology — Posted on 2019-10-29

418 Scop3P: a comprehensive resource of human phosphosites within their full context

Ramasamy, P.; Turan, D.; Tichshenko, N.; Hulstaert, N.; Vandermarliere, E.; Vranken, W.; Martens, L.

10.1101/684985 — bioinformatics — Posted on 2019-10-29

419 RNA-spray-mediated silencing of Fusarium graminearum AGO and DCL genes improve barley disease resistance

Werner, B.; Gaffar, F. Y.; Biedenkopf, D.; Koch, A.

10.1101/821868 — plant biology — Posted on 2019-10-29

420 Protein Quality Control is a Risk Factor and Therapeutic Target in Toxin-Induced Biliary Atresia

Zhao, X.; Lorent, K.; Escobar-Zarate, D.; Rajagopalan, R.; Loomes, K.; Gillespie, K.; Mesaros, C.; Estrada, M.; Blair, I.; Winkler, J.; Spinner, N.; Devoto, M.; Pack, M.

10.1101/821967 — pathology — Posted on 2019-10-29

421 Optimizing the Accuracy of Cortical Volumetric Analysis in Traumatic Brain Injury

Diamond, B. R.; Mac Donald, C. L.; Snider, S. B.; Fischl, B.; Dams-O'Connor, K.; Edlow, B. L.

10.1101/822148 — neuroscience — Posted on 2019-10-29

422 Light stimulation into dorsal raphe nucleus contributes to antidepressant effect for a stressed rat model

LI, X.

10.1101/821421 — neuroscience — Posted on 2019-10-29

423 Dopamine neurons change their tuning according to courtship context in singing birds

Gadagkar, V.; Puzerey, P. A.; Goldberg, J. H.

10.1101/822817 — neuroscience — Posted on 2019-10-29

424 Sparse epistatic patterns in the evolution of terpene synthases

Ballal, A.; Laurendon, C.; Salmon, M.; Vardakou, M.; Cheema, J.; O'Maille, P. E.; Morozov, A. V.

10.1101/822544 — evolutionary biology — Posted on 2019-10-29

425 Anthropogenic impact on lake bacterial communities across Eastern Canada

Kraemer, S.; da Costa, N. B.; Shapiro, B. J.; Huot, Y.; Walsh, D. A.

10.1101/821991 — ecology — Posted on 2019-10-29

426 Linnaeus: Interpretable Deep Learning Classification of Single Cell Transcript Data

Prince, E. W.; Hankinson, T. C.

10.1101/822759 — bioinformatics — Posted on 2019-10-29

427 The Longitudinal Assessment of Neuropsychiatric Symptoms in Mild Cognitive Impairment and Alzheimer’s disease and their Association with White Matter Hyperintensities in the National Alzheimer’s Coordinating Center’s Uniform Data Set

Anor, C. J.; Dadar, M.; Collins, D. L.; Tartaglia, C.

10.1101/822809 — neuroscience — Posted on 2019-10-29

428 Intrinsic dynamics enhance temporal stability of stimulus representation along a visual cortical hierarchy

Piasini, E.; Soltuzu, L.; Caramellino, R.; Balasubramanian, V.; Zoccolan, D.

10.1101/822130 — neuroscience — Posted on 2019-10-29

429 Proximal and Distal Gut Mucosa Adapt Differently to Westernized Diet, Promoting an Insulin-Resistant Dysmetabolic State

West, J. A.; Tsakmaki, A.; Huang, J. H. S.; Ghosh, S. S.; Parkes, D. G.; Wismann, P.; Rigbolt, K. T. G.; Pedersen, P. J.; Pavlidis, P.; Maggs, D.; Lopez-Talavera, J. C.; Bewick, G. A.; Rajagopalan, H.

10.1101/822122 — molecular biology — Posted on 2019-10-29

430 Long-read bitter gourd (Momordica charantia) genome and the genomic architecture of domestication

Matsumura, H.; Hsiao, M.-C.; Toyoda, A.; Taniai, N.; Tarora, K.; Urasaki, N.; Anand, S. S.; Dhillon, N. P.; Schafleitner, R.; Lee, C.-R.

10.1101/822411 — genomics — Posted on 2019-10-29

431 Population genomic evidence that human and animal infections in Africa come from the same populations of Dracunculus medinensis

Durrant, C.; Thiele, E. A.; Holroyd, N.; Doyle, S. R.; Salle, G.; Tracey, A.; Sankaranaranayan, G.; Lotkowska, M. E.; Bennett, H. M.; Huckvale, T.; Abdellah, Z.; Tchindebet, O.; Wossen, M.; Logora, M. S. Y.; Coulibaly, C. O.; Weiss, A.; Schulte-Hostedde, A. I.; Foster, J.; Cleveland, C. A.; Yabsley, M. J.; Ruiz-Tiben, E.; Berriman, M.; Eberhard, M. L.; Cotton, J. A.

10.1101/808923 — genomics — Posted on 2019-10-29

432 Distinguishing Felsenstein zone from Farris zone using neural networks

Drucks, T.; Leuchtenberger, A. F.; Burgstaller-Muehlbacher, S.; Crotty, S. M.; Schmidt, H. A.; von Haeseler, A.

10.1101/822288 — evolutionary biology — Posted on 2019-10-29

433 Cross-Infectivity of Vorticella across Genera of Mosquitoes for Development of Biological Mosquito Control Strategies

Durden, S.; Duguma, D.; Hunter, W.; Cruz, A.; Debboun, M.

10.1101/822536 — ecology — Posted on 2019-10-29

434 The wasting-associated oncometabolite succinate disrupts myogenesis and impairs skeletal muscle regeneration

Arneson, P. C.; Hogan, K. A.; Shin, A. M.; Samani, A.; Jatoi, A.; Doles, J. D.

10.1101/822338 — cancer biology — Posted on 2019-10-29

435 Assembling a corpus of phosphoproteomic annotations using ProtMapper to normalize site information from databases and text mining

Bachman, J. A.; Gyori, B. M.; Sorger, P. K.

10.1101/822668 — bioinformatics — Posted on 2019-10-29

436 Simultaneous measurement of biochemical phenotypes and gene expression in single cells

Richer, A. L.; Riemondy, K.; Hardie, L.; Hesselberth, J. R.

10.1101/820233 — biochemistry — Posted on 2019-10-29

437 Aβ receptors specifically recognize molecular features displayed by fibril ends and neurotoxic oligomers

Amin, L.; Harris, D. A.

10.1101/822361 — neuroscience — Posted on 2019-10-29

438 Firing rate-dependent phase responses of Purkinje cells support transient oscillations

Zang, Y.; De Schutter, E.

10.1101/822478 — neuroscience — Posted on 2019-10-29

439 Recurrent interactions in local cortical circuits

Peron, S. P.; Voelcker, B.; Pancholi, R.; Wittenbach, J.; Olafsdottir, H. F.; Freeman, J.; Svoboda, K.

10.1101/822700 — neuroscience — Posted on 2019-10-29

440 Tissue- and population-level microbiome analysis of the wasp spider Argiope bruennichi identifies a novel dominant bacterial symbiont

Sheffer, M. M.; Uhl, G.; Prost, S.; Urich, T.; Lueders, T.; Bengtsson, M. M.

10.1101/822437 — microbiology — Posted on 2019-10-29

441 Establishment of an eHAP1 Human Haploid Cell Line Hybrid Reference Genome Assembled from Short and Long Reads

Law, W. D.; Warren, R. L.; McCallion, A. S.

10.1101/822593 — genomics — Posted on 2019-10-29

442 Index and biological spectrum of accessible DNA elements in the human genome

Meuleman, W.; Muratov, A.; Rynes, E.; Vierstra, J.; Teodosiadis, A.; Reynolds, A.; Haugen, E.; Sandstrom, R.; Kaul, R.; Stamatoyannopoulos, J. A.

10.1101/822510 — genomics — Posted on 2019-10-29

443 Insect galls thrive on salt stressed big sagebrush host

Wu, C. T.

10.1101/821140 — ecology — Posted on 2019-10-29

444 A dormant sub-population expressing interleukin-1 receptor characterises anti-estrogen resistant ALDH+ breast cancer stem cells

Sarmiento-Castro, A.; Caamano-Gutierrez, E.; Sims, A.; James, M. I.; Santiago-Gomez, A.; Eyre, R.; Clark, C.; Brown, M. E.; Brooks, M. D.; Hayes, D. F.; Wicha, M. S.; Howell, S. J.; Clarke, R.; Simoes, B. M.

10.1101/821876 — cancer biology — Posted on 2019-10-29

445 Evaluating DCA-based method performances for RNA contact prediction by a well-curated dataset

Pucci, F.; Zerihun, M. B.; Peter, E. K.; Schug, A.

10.1101/822023 — bioinformatics — Posted on 2019-10-29

446 A novel MRI-based finite element modeling method for calculation of myocardial ischemia effect in patients with functional mitral regurgitation.

Zhang, Y.; Wang, V. Y.; Morgan, A. E.; Kim, J.; Ge, L.; Guccione, J. M.; Weinsaft, J. W.; Ratcliffe, M. B.

10.1101/822502 — bioengineering — Posted on 2019-10-29

447 Women in Science and Technology: An Indian scenario

Swarup, A.; Dey, T.

10.1101/817668 — scientific communication and education — Posted on 2019-10-29

448 Structure of the host cell recognition and penetration machinery of a Staphylococcus aureus bacteriophage

Kizziah, J. L.; Manning, K. A.; Dearborn, A. D.; Dokland, T.

10.1101/721746 — microbiology — Posted on 2019-10-29

449 Insights from two decades of the Student Conference on Conservation Science

Geldmann, J.; Alves-Pinto, H.; Amano, T.; Barlett, H.; Christie, A. P.; Collas, L.; Cooke, S. C.; Correa, R.; Cripps, I.; Doherty, A.; Finch, T.; Garnett, E.; Hua, F.; Jones, J. P. G.; Kasoar, T.; MacFarlane, D.; Martin, P. A.; Mukherjee, N.; Mumby, H. S.; Payne, C.; Petrovan, S. O.; Rocha, R.; Russell, K.; Simmons, B. I.; Wauchope, H.; Worthington, T. A.; Trevelyan, R.; Green, R.; Balmford, A.

10.1101/819623 — ecology — Posted on 2019-10-29

450 SCryPTA: A web-based platform for analyzing Small-Angle Scattering curves of lyotropic liquid crystals

Castro, R. D. d.; Casadei, B. R.; Santana, B. V.; Lotierzo, M.; Oliveira, N. F.; Malheiros, B.; Mariani, P.; Kaminski, R. C. K.; Barbosa, L. R. S.

10.1101/791848 — biophysics — Posted on 2019-10-29

451 Scop3P: a comprehensive resource of human phosphosites within their full context

Ramasamy, P.; Turan, D.; Tichshenko, N.; Hulstaert, N.; Vandermarliere, E.; Vranken, W.; Martens, L.

10.1101/684985 — bioinformatics — Posted on 2019-10-29

452 Decoys and dilution: the impact of incompetent hosts on prevalence of Chagas disease

Zahid, M. H.; Kribs, C.

10.1101/597708 — epidemiology — Posted on 2019-10-29

453 Statistical modeling of bacterial promoter sequences for regulatory motif discovery with the help of transcriptome data: application to Listeria monocytogenes

Nicolas, P.; Sultan, I.; Fromion, V.; Schbath, S.

10.1101/723346 — bioinformatics — Posted on 2019-10-29

454 The expression of cannabinoid-related genes in multiple disease cell lines

Arlen, P. A.; Wu, X.

10.1101/759332 — cancer biology — Posted on 2019-10-29

455 Cell Type-specific Genome Scans of DNA Methylation Diversity Indicate an Important Role for Transposable Elements

Kartal, O.; Schmid, M. W.; Grossniklaus, U.

10.1101/801233 — genomics — Posted on 2019-10-29

456 Comprehensive molecular characterization of pediatric treatment-induced high-grade glioma: A distinct entity despite disparate etiologies with defining molecular characteristics and potential therapeutic targets

DeSisto, J.; Lucas, J. T.; Xu, K.; Donson, A.; Lin, T.; Sanford, B.; Tran, Q. T.; Hedges, D.; Hsu, C.-Y.; Armstrong, G. T.; Arnold, M.; Bhatia, S.; Flannery, P.; Lemma, R.; Hardie, L.; Schüller, U.; Hoffman, L. M.; Dorris, K.; Mulcahy Levy, J.; Hankinson, T. C.; Handler, M.; Liu, A.; Foreman, N.; Vibhakar, R.; Jones, K. L.; Allen, S.; Zhang, J.; Baker, S. J.; Merchant, T.; Orr, B. A.; Green, A. L.

10.1101/809772 — cancer biology — Posted on 2019-10-29

457 Motor planning of vertical arm movements in healthy older adults: does effort optimization persist with aging?

Poirier, G.; Papaxanthis, C.; Mourey, F.; Gaveau, J.

10.1101/821314 — neuroscience — Posted on 2019-10-29

458 A neural network for online spike classification that improves decoding accuracy

Issar, D.; Williamson, R.; Khanna, S.; Smith, M. A.

10.1101/722934 — neuroscience — Posted on 2019-10-29

459 EEG-based classification of natural sounds reveals specialized responses to speech and music

Zuk, N. J.; Teoh, E. S.; Lalor, E. C.

10.1101/755553 — neuroscience — Posted on 2019-10-29

460 Prospective and retrospective contributions to intention awareness in voluntary action

Schultze-Kraft, M.; Pares-Pujolras, E.; Matic, K.; Haggard, P.; Haynes, J.-D.

10.1101/821488 — neuroscience — Posted on 2019-10-29

461 Cerebellar plasticity and associative memories are controlled by perineuronal nets

Carulli, D.; Broersen, R.; de Winter, F.; Muir, E. M.; Meskovic, M.; de Waal, M.; de Vries, S.; Boele, H.-J.; Canto, C. B.; De Zeeuw, C. I.; Verhaagen, J.

10.1101/736694 — neuroscience — Posted on 2019-10-29

462 PANDAA-monium: Intentional violations of conventional qPCR design enables rapid, HIV-1 subtype-independent drug resistance SNP detection

MacLeod, I. J.; Rowley, C. F.; Essex, M.

10.1101/795054 — molecular biology — Posted on 2019-10-29

463 Linker Histone H1 subtypes specifically regulate neutrophil differentiation

Sollberger, G.; Streeck, R.; Caffrey, B. E.; Skoultchi, A. I.; Zychlinsky, A.

10.1101/763482 — immunology — Posted on 2019-10-29

464 Native seed addition as an effective tool for post-invasion restoration

Bucharova, A.; Krahulec, F.

10.1101/774331 — ecology — Posted on 2019-10-29

465 Nano-twines to perpendicular lateral protrusions: Role of force exerting perpendicular lateral protrusions in fibroblastic cell contraction

Padhi, A.; Singh, K.; Franco-Barraza, J.; Marston, D.; Hahn, K. M.; Cukierman, E.; Kapania, R.; Nain, A. S.

10.1101/711507 — cell biology — Posted on 2019-10-29

466 Estimation of high-order aberrations and anisotropic magnification from cryo-EM datasets in RELION-3.1

Zivanov, J.; Nakane, T.; Scheres, S.

10.1101/798066 — biophysics — Posted on 2019-10-29

467 Open hardware low-cost system for behavioral experiments simultaneously with electrophysiological recordings.

Aguiar, L. A. A.; Vasconcelos, N. A. P.; Tunes, G. C.; Fontenele, A. J.; Reyes, M. B.; Nogueira, R. d. A.; Carelli, P. V.

10.1101/821843 — animal behavior and cognition — Posted on 2019-10-29

468 Marine foams represent compressed sea-surface microlayer with distinctive bacterial communities

Rahlff, J.; Herlemann, D.; Giebel, H.-A.; Mustaffa, N. I. H.; Wurl, O.; Stolle, C.

10.1101/820696 — microbiology — Posted on 2019-10-29

469 Heritable temporal gene expression patterns correlate with metabolomic seed content in developing hexaploid oat seed

Hu, H.; Gutierrez-Gonzalez, J.; Liu, X.; Yeats, T.; Garvin, D.; Hoekenga, O.; Sorrells, M.; Gore, M.; Jannink, J.-L.

10.1101/709774 — genetics — Posted on 2019-10-29

470 Genotyping structural variants in pangenome graphs using the vg toolkit

Hickey, G.; Heller, D.; Monlong, J.; Sibbesen, J. A.; Siren, J.; Eizenga, J.; Dawson, E.; Garrison, E.; Novak, A.; Paten, B.

10.1101/654566 — bioinformatics — Posted on 2019-10-29

471 Novel mediation analysis of human plasma proteome and metabolome reveals mediators of improved glycemia after gastric bypass surgery

Dreyfuss, J.; Yang, Y.; Pan, H.; Dong, X.; Simonson, D. C.; Vernon, A.; Aryal, P.; Konkar, A.; Sebastian, Y.; Higgs, B. W.; Grimsby, J.; Rondinone, C. M.; Kasif, S.; Kahn, B. B.; Foster, K.; Goldfine, A.; Patti, M. E.

10.1101/817494 — systems biology — Posted on 2019-10-29

472 Representation of Visual Landmarks in Retrosplenial Cortex

Fischer, L.; Mojica Soto-Albors, R.; Buck, F.; Harnett, M.

10.1101/811430 — neuroscience — Posted on 2019-10-29

473 The CNS lymphatic system modulates the adaptive neuro-immune response in the perilesional cortex after brain trauma

Wojciechowski, S.; Vihma, M.; Galbardi, B.; Keuters, M. H.; Antila, S.; Koistinaho, J. E.; Noe, F. M.

10.1101/821645 — neuroscience — Posted on 2019-10-29

474 Inhibitory interneurons distribute widely across the mouse thalamus and form ontogenetic spatial clusters

Jager, P.; Calpin, P.; Durmishi, X.; Salgarella, I.; Shimogori, T.; Delogu, A.

10.1101/651745 — neuroscience — Posted on 2019-10-29

475 A phosphate starvation response gene (psr1-like) is present and expressed in Micromonas pusilla and other marine algae

Fiore, C.; Alexander, H.; Kido Soule, M.; Kujawinski, E.

10.1101/484824 — microbiology — Posted on 2019-10-29

476 Phylogeographic structure of the pygmy shrew: revisiting the roles of southern and northern refugia in Europe.

Vega, R.; McDevitt, A. D.; Stojak, J.; Mishta, A.; Wojcik, J. M.; Krystufek, B.; Searle, J. B.

10.1101/819912 — evolutionary biology — Posted on 2019-10-29

477 Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss

Legried, B.; Molloy, E. K.; Warnow, T.; Roch, S.

10.1101/821439 — evolutionary biology — Posted on 2019-10-29

478 Barthelonids represent a deep-branching Metamonad clade with mitochondrion-related organelles generating no ATP.

Yazaki, E.; Kume, K.; Shiratori, T.; Eglit, Y.; Tanifuji, G.; Harada, R.; Simpson, A. G. B.; Ishita, K.-i.; Hashimoto, T.; Inagaki, Y.

10.1101/805762 — evolutionary biology — Posted on 2019-10-29

479 Receptor tyrosine kinases regulate signal transduction through a liquid-liquid phase separated state

Lin, C.-C.; Suen, K. M.; Jeffrey, P.-A.; Wieteska, L.; Stainthorp, A.; Seiler, C.; Koss, H.; Molina-Paris, C.; Miska, E. A.; Ahmed, Z.; Ladbury, J. E.

10.1101/783720 — cell biology — Posted on 2019-10-29

480 N-terminal protein acetylation by NatB modulates the levels of Nmnats, the NAD+ biosynthetic enzymes in Saccharomyces cerevisiae

Croft, T.; Venkatakrishnan, P.; James Theoga Raj, C.; Groth, B.; Cater, T.; Lin, S.-J.

10.1101/814327 — biochemistry — Posted on 2019-10-29

481 Perceptual decisions about object shape bias visuomotor coordination during rapid reaching and interception

Barany, D. A.; Granados, A. G.; Schrayer, M.; Cutts, S. A.; Singh, T.

10.1101/821074 — neuroscience — Posted on 2019-10-29

482 Physical activity and risk of Alzheimer’s disease: a two-sample Mendelian randomization study

Baumeister, S.-E.; Karch, A.; Bahls, M.; Teumer, A.; Leitzmann, M.; Baurecht, H.

10.1101/819821 — genetics — Posted on 2019-10-29

483 SUSTAINED DOPAMINERGIC PLATEAUS AND NORADRENERGIC DEPRESSIONS BIAS TRANSITIONS INTO EXPLOITATIVE BEHAVIORAL STATES

Koralek, A. C.; Costa, R. M.

10.1101/822650 — neuroscience — Posted on 2019-10-29

484 N-terminal domain Increases Activation of Elephant Shark Glucocorticoid and Mineralocorticoid Receptors

Katsu, Y.; Shariful, I. M.; Lin, X.; Takagi, W.; Urushitani, H.; Kohno, S.; Hyodo, S.; Baker, M. E.

10.1101/822718 — evolutionary biology — Posted on 2019-10-29

485 Roles of adenosine and cytosine methylation changes and genetic mutations in adaptation to different temperatures

Bruneaux, M.; Kronholm, I.; Ashrafi, R.; Ketola, T.

10.1101/822080 — evolutionary biology — Posted on 2019-10-29

486 Quantifying glioblastoma drug response dynamics incorporating resistance and blood brain barrier penetrance from experimental data

Massey, S. C.; Urcuyo, J. C.; Marin, B. M.; Sarkaria, J. N.; Swanson, K. R.

10.1101/822585 — cancer biology — Posted on 2019-10-29

487 The Effective Coarse-grained Hessian Dictates Allostery in IGPS

Lake, P. T.; Davidson, R. B.; Klem, H.; Hocky, G. M.; McCullagh, M.

10.1101/822882 — biophysics — Posted on 2019-10-29

488 Amyloid structure determination in RELION-3.1

Scheres, S.

10.1101/823310 — biophysics — Posted on 2019-10-29

489 Antibody-Recruiting Protein-Catalyzed Capture Agents to Combat Antibiotic-Resistant Bacteria

Idso, M. N.; Akhade, A. S.; Arrieta-Ortiz, M. L.; Lai, B. T.; Srinivas, V.; Hopkins, J. P.; Oliveira Gomes, A.; Subramanian, N.; Baliga, N.; Heath, J. R.

10.1101/822346 — bioengineering — Posted on 2019-10-29

490 Atomic structures determined from digitally defined nanocrystalline regions

Gallagher-Jones, M. J.; Bustillo, K. C.; Ophus, C.; Richards, L. S.; Ciston, J.; Lee, S.; Minor, A. M.; Rodriguez, J. A.

10.1101/820274 — biophysics — Posted on 2019-10-29

491 Accelerated clearing and molecular labeling of large tissue samples using magnetohydrodynamic force

Dwyer, J. F.; Ramirez, M. D.; Katz, P.; Karlstrom, R. O.; Bergan, J. F.

10.1101/819292 — neuroscience — Posted on 2019-10-29

492 Self-assembly of multi-component mitochondrial nucleoids via phase separation

Feric, M.; Demarest, T. G.; Tian, J.; Croteau, D. L.; Bohr, V. A.; Misteli, T.

10.1101/822858 — cell biology — Posted on 2019-10-29

493 Effect of temperature and agitation rate variation on the growth of NS0 cell line in monoclonal antibody production

Shetty, S.

10.1101/822601 — cell biology — Posted on 2019-10-29

494 TGF-β signaling is critical for maintenance of the tendon cell fate

Tan, G.-K.; Pryce, B. A.; Stabio, A.; Brigande, J. V.; Wang, C.; Xia, Z.; Tufa, S. F.; Keene, D. R.; Schweitzer, R.

10.1101/823021 — cell biology — Posted on 2019-10-29

495 A complex structure of arrestin-2 bound to a G protein-coupled receptor

Yin, W.; Li, Z.; Jin, M.; Yin, Y.; de Waal, P. W.; Pal, K.; Yin, Y.; Gao, X.; He, Y.; Gao, J.; Wang, X.; Zhang, Y.; Zhou, H.; Melcher, K.; Jiang, Y.; Cong, Y.; Zhou, E.; Yu, X.; Xu, H. E.

10.1101/822957 — biophysics — Posted on 2019-10-29

496 Actomyosin, vimentin and LINC complex pull on osteosarcoma nuclei to deform on micropillar topography

Wakhloo, N. T.; Anders, S.; Badique, F.; Eichhorn, M.; Brigaud, I.; Petithory, T.; Vassaux, M.; Milan, J.-L.; Freund, J.-N.; Ruhe, J.; Davidson, P. M.; Pieuchot, L.; Anselme, K.

10.1101/822445 — cell biology — Posted on 2019-10-29

497 NADPH and glutathione redox link TCA cycle activity to endoplasmic reticulum stress

Gansemer, E. R.; McCommis, K. S.; Martino, M.; King-McAlpin, A. Q.; Potthoff, M. J.; Finck, B. N.; Taylor, E. B.; Rutkowski, D. T.

10.1101/822775 — cell biology — Posted on 2019-10-29

498 STRIPAK directs PP2A activity toward MAP4K4 to promote oncogenic transformation

Hahn, W. C.; Kim, J. W.; Berrios, C.; Kim, M.; Schade, A. E.; Adelmant, G.; Yeerna, H.; Damato, E.; Iniguez, A. B.; Swanson, S. K.; Florens, L.; Washburn, M. P.; Stegmaier, K.; Gray, N. S.; Tamayo, P.; Gjoerup, O.; Marto, J. A.; DeCaprio, J.

10.1101/823096 — cancer biology — Posted on 2019-10-29

499 Accurate and Complete Genomes from Metagenomes

Chen, L.-X.; Anantharaman, K.; Shaiber, A.; Eren, A. M.; Banfield, J. F.

10.1101/808410 — microbiology — Posted on 2019-10-29

500 Functionally-informed fine-mapping and polygenic localization of complex trait heritability

Weissbrod, O.; Hormozdiari, F.; Benner, C.; Cui, R.; Ulirsch, J.; Gazal, S.; Schoech, A. P.; van de Geijn, B.; Reshef, Y.; Marquez-Luna, C.; O'Connor, L. J.; Pirinen, M.; Finucane, H. K.; Price, A. L.

10.1101/807792 — genetics — Posted on 2019-10-29

501 Evidence for widespread selection in shaping the genomic landscape during speciation of Populus

Wang, J.; Street, N.; Park, E.-J.; Ingvarsson, P. K.; Liu, J.

10.1101/819219 — evolutionary biology — Posted on 2019-10-29

502 Cross-kingdom regulation of tRNAs/tRFs derived from Chinese yew

Cao, K.-Y.; Yan, T.-M.; Zhang, J.-Z.; Chan, T.-F.; Li, J.; Li, C.; Leung, E. L.-H.; Jiang, Z.-H.

10.1101/821165 — cell biology — Posted on 2019-10-29

503 Conformational Plasticity of the ClpAP AAA+ Protease Couples Protein Unfolding and Proteolysis

Lopez, K. E.; Rizo, A. N.; Tse, E.; Lin, J.; Scull, N. W.; Thwin, A. C.; Lucius, A. L.; Shorter, J.; Southworth, D. R.

10.1101/820209 — biophysics — Posted on 2019-10-29

504 Mimicry embedding for advanced neural network training of 3D biomedical micrographs

Yakimovich, A.; Huttunen, M.; Samolej, J.; Clough, B.; Yoshida, N.; Mostowy, S.; Frickel, E.; Mercer, J.

10.1101/820076 — bioinformatics — Posted on 2019-10-29

505 Inferring low-dimensional latent descriptions of animal vocalizations

Goffinet, J.; Mooney, R.; Pearson, J.

10.1101/811661 — animal behavior and cognition — Posted on 2019-10-29

506 A small family business: synergistic and additive effects of the queen and the brood on worker reproduction in a primitively eusocial bee

Orlova, M.; Starkey, J. A.; Amsalem, E.

10.1101/756692 — animal behavior and cognition — Posted on 2019-10-29

507 GPI-anchored SKU5/SKS are maternally required for integument development in Arabidopsis

Zhou, K.

10.1101/813733 — plant biology — Posted on 2019-10-29

508 Towards Staining Independent Segmentation of Glomerulus from Histopathological Images of Kidney

Liu, R.; Wang, L.; He, J.; Chen, W.

10.1101/821181 — pathology — Posted on 2019-10-29

509 Retrieved-context theory of memory in emotional disorders

Cohen, R. T.; Kahana, M. J.

10.1101/817486 — neuroscience — Posted on 2019-10-29

510 A Chromatin Accessibility Atlas of the Developing Human Telencephalon

Markenscoff-Papadimitriou, E.; Whalen, S.; Przytycki, P.; Thomas, R.; Binyameen, F.; Nowakowski, T. J.; Sanders, S. J.; State, M. W.; Pollard, K. S.; Rubenstein, J. L.

10.1101/811620 — neuroscience — Posted on 2019-10-29

511 The histone methyltransferase DOT1L is essential for humoral immune responses

Kealy, L.; Di Pietro, A.; Scheer, S.; Dalit, L.; Groom, J.; Zaph, C.; Good-Jacobson, K. L.

10.1101/821462 — immunology — Posted on 2019-10-29

512 Stress-mediated convergence of splicing landscapes in male and female Rock Doves

Lang, A. S.; Austin, S. H.; Harris, R. M.; Calisi, R. M.; MacManes, M. D.

10.1101/798413 — genomics — Posted on 2019-10-29

513 Long Read based Human Genomic Structural Variation Detection with cuteSV

Jiang, T.; Liu, B.; Jiang, Y.; Li, J.; Gao, Y.; Cui, Z.; Liu, Y.; Wang, Y.

10.1101/780700 — bioinformatics — Posted on 2019-10-29

514 Evaluation of six phase encoding based susceptibility distortion correction methods for diffusion MRI

Gu, X.; Eklund, A.

10.1101/766139 — neuroscience — Posted on 2019-10-29

515 Mechanotransduction activity facilitates hair cell toxicity caused by the heavy metal cadmium

Schmid, C.; Alampi, I.; Briggs, J.; Tarcza, K.; Stawicki, T. M.

10.1101/812438 — neuroscience — Posted on 2019-10-29

516 Spatiotemporal patterns of neocortical activity around hippocampal sharp-wave ripples

Karimi Abadchi, J.; Nazari-Ahangarkolaee, M.; Gattas, S.; Bermudez-Contreras, E.; Luczak, A.; McNaughton, B. L.; Mohajerani, M. H.

10.1101/787218 — neuroscience — Posted on 2019-10-29

517 A transcriptional toolbox for exploring peripheral neuro-immune interactions.

Liang, Z.; Hore, Z.; Harley, P.; Stanley, F. U.; Michrowska, A.; Dahiya, M.; LaRussa, F.; Jager, S. E.; Villa-Hernandez, S.; Denk, F.

10.1101/813980 — neuroscience — Posted on 2019-10-29

518 Culex saltanensis and Culex interfor (Diptera: Culicidae) are susceptible and competent to transmit St. Louis encephalitis virus (Flavivirus: Flaviviridae) in central Argentina.

Beranek, M.; Quaglia, A.; Peralta, G.; Flores, F.; Stein, M.; Diaz, A.; Almiron, W.; Contigiani, M.

10.1101/722579 — microbiology — Posted on 2019-10-29

519 Dual RNA-seq provides insight into the biology of the neglected intracellular human pathogen Orientia tsutsugamushi

Mika-Gospodorz, B.; Giengkam, S.; Westermann, A.; Wongsantichon, J.; Kion-Crosby, W. B.; Chuenklin, S.; Wang, L. C.; Sunyakumthorn, P.; Sobota, R.; Subbian, S.; Vogel, J.; Barquist, L.; Salje, J.

10.1101/743641 — microbiology — Posted on 2019-10-29

520 Control of septum thickness by a large protein ring

Wenzel, M.; Celik Gulsoy, I.; Gao, Y.; Willemse, J.; van Rosmalen, M. G. M.; wuite, G.; Roos, W.; Hamoen, L. W.

10.1101/771139 — microbiology — Posted on 2019-10-29

521 Defining Monocyte Differentiation into Colonic and Ileal Macrophages

Gross-Vered, M.; Shemer, A.; Bernshtein, B.; Curato, C.; Trzebanski, S.; Stelzer, G.; Salame, T.-M.; David, E.; Boura-Halfon, S.; Chappell-Maor, L.; Levkovits, D.; Jung, S.

10.1101/695262 — immunology — Posted on 2019-10-29

522 Evolution and genetic architecture of disassortative mating at a locus under heterozygote advantage

Maisonneuve, L.; Joron, M.; Chouteau, M.; Llaurens, V.

10.1101/616409 — evolutionary biology — Posted on 2019-10-29

523 Evolution of CDK1 paralog specializations in a lineage with fast developing planktonic embryos

Ma, X.; Ovrebo, J. I.; Thompson, E. M.

10.1101/817783 — evolutionary biology — Posted on 2019-10-29

524 Insights into the origin of metazoan multicellularity from predatory unicellular relatives of animals

Tikhonenkov, D. V.; Hehenberger, E.; Esaulov, A. S.; Belyakova, O. I.; Mazei, Y. A.; Mylnikov, A. P.; Keeling, P. J.

10.1101/817874 — evolutionary biology — Posted on 2019-10-29

525 Partitioning plant spectral diversity into alpha and beta components

Laliberte, E.; Schweiger, A. K.; Legendre, P.

10.1101/742080 — ecology — Posted on 2019-10-29

526 Large-scale differential gene expression analysis identifies genes associated with Bipolar Disorder in post-mortem brain

Omar, M. N.; Youssef, M.; Abdellatif, M.

10.1101/770529 — bioinformatics — Posted on 2019-10-29

527 Sex-specific transgenerational plasticity in threespined sticklebacks

Hellmann, J. K.; Bukhari, S. A.; Deno, J.; Bell, A. M.

10.1101/763862 — evolutionary biology — Posted on 2019-10-29

528 M2IA: a Web Server for Microbiome and Metabolome Integrative Analysis

Ni, Y.; Yu, G.; Chen, H.; Deng, Y.; Wells, P. M.; Steves, C. J.; Ju, F.; Fu, J.

10.1101/678813 — bioinformatics — Posted on 2019-10-29

529 Label-independent flow cytometry and unsupervised neural network method for de novo clustering of cell populations

Peuss, R.; Box, A. C.; Accorsi, A.; Wood, C.; Sanchez Alvarado, A.; Rohner, N.

10.1101/603035 — zoology — Posted on 2019-10-29

530 Mechanical properties of the stigmatic cell wall mediate pollen tube path in Arabidopsis

Riglet, L.; Rozier, F.; Kodera, C.; Fobis-Loisy, I.; Gaude, T.

10.1101/384321 — plant biology — Posted on 2019-10-29

531 A conserved principle of glial organization in the paleocortex and neocortex

Pinto-Duarte, A.; Bogue, K.; Sejnowski, T. J.; Srinivasan, S.

10.1101/449421 — neuroscience — Posted on 2019-10-29

532 The genetic robustness of RNA and protein from evolutionary, structural and functional perspectives

Coray, D. S.; Sibaeva, N.; McGimpsey, S.; Gardner, P. P.

10.1101/480087 — molecular biology — Posted on 2019-10-29

533 Characterizing and inferring quantitative cell cycle phase in single-cellRNA-seq data analysis

Hsiao, C. J.; Tung, P.; Blischak, J. D.; Burnett, J.; Barr, K. A.; Dey, K. K.; Stephens, M.; Gilad, Y.

10.1101/526848 — genomics — Posted on 2019-10-29

534 LinkedSV for detection of mosaic structural variants from linked-read exome and genome sequencing data

Fang, L.; Kao, C.; Gonzalez, M. V.; Mafra, F. A.; Pellegrino da Silva, R.; Li, M.; Wenzel, S.; Wimmer, K.; Hakonarson, H.; Wang, K.

10.1101/409789 — bioinformatics — Posted on 2019-10-29

535 Interindividual variability and lateralization of μ-opioid receptors in the human brain

Kantonen, T.; Karjalainen, T.; Isojaervi, J.; Nuutila, P.; Tuisku, J.; Rinne, J.; Hietala, J.; Kaasinen, V.; Kalliokoski, K.; Scheinin, H.; Hirvonen, J.; Vehtari, A.; Nummenmaa, L.

10.1101/821223 — neuroscience — Posted on 2019-10-29

536 Numerical simulation of the viral entry into a cell driven by the receptor diffusion

Wiegold, T.; Klinge, S.; Gilbert, R. P.; Holzapfel, G. A.

10.1101/822015 — cell biology — Posted on 2019-10-29

537 PTP-MEG2 regulates quantal size and fusion pore opening through two distinct structural bases and substrates

Xu, Y.-f.; Sun, J.; Yu, X.; Chen, X.; Cui, M.; Yang, Z.; Liu, C.-h.; Yang, X.-z.; Wang, Y.-j.; Liu, Q.; Zhang, S.; Wang, C.; Shen, Y.-m.; Zhang, Z.-y.; Zhao, W.-d.; Wang, C.-h.; Ji, Z.-l.; Xiao, P.; Li, K.-s.

10.1101/822031 — cell biology — Posted on 2019-10-29

538 Recruiting RyRs to open in a Ca2+ release unit: Single-RyR gating properties make RyR group dynamics

Gillespie, D.

10.1101/821900 — biophysics — Posted on 2019-10-29

539 Association of Model Neurotransmitters with Lipid Bilayer Membranes

Loesche, M.; Heinrich, F.; Josey, B.; Silin, V.

10.1101/822189 — biophysics — Posted on 2019-10-29

540 Quantitative modeling of the function of kinetically driven transcriptional riboswitches

Parra-Rojas, C.; Furtig, B.; Schwalbe, H.; Hernandez-Vargas, E. A.

10.1101/821884 — systems biology — Posted on 2019-10-29

541 Metabolic cross-feeding allows a gut microbial community to overcome detrimental diets and alter host behaviour

Henriques, S. F.; Serra, L.; Francisco, A. P.; Carvalho-Santos, Z.; Baltazar, C.; Elias, A. P.; Anjos, M.; Zhang, T.; Maddocks, O. D. K.; Ribeiro, C.

10.1101/821892 — neuroscience — Posted on 2019-10-29

542 The histone methyltransferase DOT1L is essential for humoral immune responses

Kealy, L.; Di Pietro, A.; Scheer, S.; Dalit, L.; Groom, J.; Zaph, C.; Good-Jacobson, K. L.

10.1101/821462 — immunology — Posted on 2019-10-29

543 Pre-adaptation to climate change through topography-driven evolution of traits and their plasticity

De Kort, H.; Panis, B.; Janssens, S.; Helsen, K.; Honnay, O.

10.1101/821561 — ecology — Posted on 2019-10-29

544 4-state model for simulating kinetic and steady-state voltage-dependent gating of gap junctions

Snipas, M.; Kraujalis, T.; Maciunas, K.; Kraujaliene, L.; Gudaitis, L.; Verselis, V. K.

10.1101/822007 — biophysics — Posted on 2019-10-29

545 Collateral fitness effects of mutations

Mehlhoff, J. D.; Stearns, F. W.; Rohm, D.; Wang, B.; Tsou, E.-Y.; Dutta, N.; Hsiao, M.-H.; Gonzalez, C. E.; Rubin, A. F.; Ostermeier, M.

10.1101/820068 — evolutionary biology — Posted on 2019-10-29

546 Structural basis of transcription inhibition by the DNA mimic protein Ocr of bacteriophage T7

Zhang, X.; Ye, F.; Kotta-Loizou, I.; Jovanovic, M.; Liu, X.; Dryden, D. T. F.; Buck, M.

10.1101/822460 — biophysics — Posted on 2019-10-29

547 Towards Staining Independent Segmentation of Glomerulus from Histopathological Images of Kidney

Liu, R.; Wang, L.; He, J.; Chen, W.

10.1101/821181 — pathology — Posted on 2019-10-29

548 TET1-mediated Oligodendrocyte Homeostasis Regulates Myelination and Synaptic Functions

Zhang, M.; Wang, J.; Zhang, K.; Lu, G.; Xu, L.; Ren, K.; Wang, W.; Liu, Y.; Xing, J.; Gao, X.; Jin, W.; Berry, K.; Xie, H.; Wu, S.; Lu, Q. R.; Zhao, X.

10.1101/821496 — neuroscience — Posted on 2019-10-29

549 Another chemolithotrophic metabolism missing in nature--sulfur comproportionation

Amend, J. P.; Aronson, H. S.; Macalady, J.; LaRowe, D. E.

10.1101/820597 — microbiology — Posted on 2019-10-29

550 The lysine methyltransferase DOT1L controls CD4+ T cell differentiation and plasticity

Scheer, S.; Bramhall, M.; Runting, J.; Russ, B.; Zaini, A.; Ellemor, J.; Rodrigues, G.; Ng, J.; Zaph, C.

10.1101/821348 — immunology — Posted on 2019-10-29

551 Testing the basic tenet of the molecular clock and neutral theory by using ancient proteomes

Liu, T.; Huang, S.

10.1101/821736 — evolutionary biology — Posted on 2019-10-29

552 The stepwise endonuclease activity of a thermophilic Argonaute protein

Xun, G.; Liu, Q.; Chong, Y.; Li, Z.; Guo, X.; Li, Y.; Fei, H.; Li, K.; Feng, Y.

10.1101/821280 — bioengineering — Posted on 2019-10-29

553 Structure-function analyses of a keratin heterotypic complex identify specific keratin regions involved in intermediate filament assembly

Lee, C.-H.; Kim, M.-S.; Li, S.; Leahy, D. J.; Coulombe, P. A.

10.1101/821090 — biochemistry — Posted on 2019-10-29

554 Retinal ganglion cells harboring the OPTN(E50K) glaucoma mutation exhibit neurodegenerative phenotypes when derived from hPSC-derived three dimensional retinal organoids

VanderWall, K. B.; Huang, K.-C.; Pan, Y.; Lavekar, S. S.; Fligor, C. M.; Allsop, A.; Lentsch, K. A.; Dang, P.; Zhang, C.; Tseng, H.; Cummins, T. R.; Meyer, J.

10.1101/820159 — neuroscience — Posted on 2019-10-29

555 Divergent excitation two photon microscopy for 3D random access mesoscale imaging at single cell resolution

Janiak, F. K.; Bartel, P.; Bale, M.; T, Y.; Komulainen, E. H.; Zhou, M.; Staras, K.; Prieto-Godino, L. L.; Euler, T.; Maravall, M.; Baden, T.

10.1101/821405 — neuroscience — Posted on 2019-10-29

556 Biosynthesis of the redox cofactor mycofactocin comprises oligoglycosylation by MftF in Mycolicibacterium smegmatis

Pena-Ortiz, L.; Graca, A. P.; Guo, H.; Braga, D.; Köllner, T.; Regestein, L.; Beemelmanns, C.; Lackner, G.

10.1101/821413 — microbiology — Posted on 2019-10-29

557 Tissue-specific expression of young small-scale duplications in human central nervous system regions

Brohard-Julien, S.; Frouin, V.; Meyer, V.; Chalabi, S.; Deleuze, J.-F.; Le Floch, E.; Battail, C.

10.1101/821256 — genomics — Posted on 2019-10-29

558 Genomic and functional gene studies suggest a key role of beta-carotene oxygenase 1 like (bco1l) gene in salmon flesh color.

Helgeland, H.; Sodeland, M.; Zoric, N.; Torgersen, J. S.; Grammes, F.; von Lintig, J.; Moen, T.; Kjoglum, S.; Lien, S.; Vage, D. I.

10.1101/821652 — genomics — Posted on 2019-10-29

559 Dual Histone Methyl Reader ZCWPW1 Facilitates Repair of Meiotic Double Strand Breaks

Mahgoub, M.; Paiano, J.; Bruno, M.; Wu, W.; Pathuri, S.; Zhang, X.; Ralls, S.; Cheng, X.; Nussenzweig, A.; Macfarlan, T.

10.1101/821603 — genetics — Posted on 2019-10-29

560 Potential soil transmission of a novel Candidatus Liberibacter strain detected in citrus seedlings grown in soil from a huanglongbing infested citrus grove

Nunes da Rocha, U.; Shin, K.; Timilsina, S.; Jones, J. B.; Singer, B. H.; van Bruggen, A. H. C.

10.1101/821553 — ecology — Posted on 2019-10-29

561 Cohesin and condensin extrude loops in a cell-cycle dependent manner

Golfier, S.; Quail, T.; Kimura, H.; Brugues, J.

10.1101/821306 — cell biology — Posted on 2019-10-29

562 Torsin ATPases are required to complete nuclear pore complex biogenesis in interphase

Rampello, A. J.; Laudermilch, E.; Vishnoi, N.; Prohet, S. M.; Shao, L.; Zhao, C.; Lusk, C. P.; Schlieker, C.

10.1101/821835 — cell biology — Posted on 2019-10-29

563 Tracking down the molecular architecture of the synaptonemal complex by expansion microscopy

Zwettler, F. U.; Spindler, M.-C.; Reinhard, S.; Klein, T.; Kurz, A.; Benavente, R.; Sauer, M.

10.1101/821298 — biophysics — Posted on 2019-10-29

564 Generalizing RNA velocity to transient cell states through dynamical modeling

Bergen, V.; Lange, M.; Peidli, S.; Wolf, F. A.; Theis, F. J.

10.1101/820936 — bioinformatics — Posted on 2019-10-29

565 A tree-planting decision support tool for urban heat island mitigation

Werbin, Z. R.; Heidari, L.; Buckley, S. R.; Brochu, P.; Butler, L.; Connolly, C.; Houttuijn Bloemendaal, L.; McCabe, T. D.; Miller, T.; Hutyra, L. R.

10.1101/821785 — scientific communication and education — Posted on 2019-10-28

566 Anlotinib overcomes multiple drug resistant of the colorectal cancer cells via inactivating PI3K/AKTpathway

lan, w.; zhao, j.; Shang, H.; Peng, J.; Chen, W.; Lin, J.

10.1101/821801 — pharmacology and toxicology — Posted on 2019-10-28

567 Differential expression of deltaFosB in reward processing regions between binge eating prone and resistant female rats

Quansah Amissah, R.; Chometton, S.; Calvez, J.; Guevremont, G.; Timofeeva, E.; Timofeev, I.

10.1101/821355 — neuroscience — Posted on 2019-10-28

568 Effects of physiological parameter evolution on the dynamics of tonic-clonic seizures

Deeba, F.; Sanz-Leon, P.; Robinson, P.

10.1101/821330 — neuroscience — Posted on 2019-10-28

569 EEG state-trajectory instability and speed reveal global principles of intrinsic spatiotemporal neural dynamics

Suzuki, S.; Menceloglu, M.; Grabowecky, M.

10.1101/821694 — neuroscience — Posted on 2019-10-28

570 Frequency of tuberculosis in Farm Workers Exposed to dairy and beef livestock in Colombia

Munoz, C.; Rueda, J.; Botero, L. E.; Mejia, G. I.; Cardona, X.; Jaramillo, M. G.; Robledo, J.

10.1101/821751 — microbiology — Posted on 2019-10-28

571 Quantification of human-mosquito contact rate using surveys and its application in determining dengue viral transmission risk

Thongsripong, P.; Qu, Z.; Yukich, J. O.; Hyman, J. M.; Wesson, D. M.

10.1101/821819 — ecology — Posted on 2019-10-28

572 Sediment accumulation, elevation change, and the vulnerability of tidal marshes in the Delaware Estuary and Barnegat Bay to accelerated sea level rise

Haaf, L.; Watson, E. B.; Raper, K.; Padeletti, A.; Maxwell-Doyle, M.; Elsey-Quirk, T.; Kreeger, D.; Velinsky, D.

10.1101/821827 — ecology — Posted on 2019-10-28

573 SEN virus genotype H distribution in β-thalassemic patients and in healthy donors in Iraq: Molecular and physiological study

Al-Ouqaili, M. T. S.; Majeed, Y. H.; Al-Ani, S. K.

10.1101/821744 — microbiology — Posted on 2019-10-28

574 Neuronal transcriptome analyses reveal novel neuropeptide modulators of excitation and inhibition imbalance in C. elegans

McCulloch, K.; Zhou, K.; Jin, Y.

10.1101/821769 — genetics — Posted on 2019-10-28

575 Two strategies underlying the trade-off of hepatitis C virus proliferation: stay-at-home or leaving-home?

Iwanami, S.; Kitagawa, K.; Asai, Y.; Ohashi, H.; Nishioka, K.; Inaba, H.; Nakaoka, S.; Wakita, T.; Diekmann, O.; Iwami, S.; Watashi, K.

10.1101/821710 — evolutionary biology — Posted on 2019-10-28

576 Land productivity dynamics in and around protected areas globally from 1999 to 2013

de la Fuente, B.; Weynants, M.; Bertzky, B.; Giacomo, D.; Mandrici, A.; Garcia Bendito, E.; Dubois, G.

10.1101/821793 — ecology — Posted on 2019-10-28

577 Screening of Tau Protein Kinase Inhibitors in a Tauopathy-relevant cell-based model of Tau Hyperphosphorylation and Oligomerization

Yadikar, H.; Torres, I.; Aiello, G.; Kurup, M.; Yang, Z.; Lin, F.; Kobeissy, F.; Yost, R.; Wang, K. K.

10.1101/821389 — neuroscience — Posted on 2019-10-28

578 Predicting lymphatic filariasis elimination in data-limited settings: a reconstructive computational framework for combining data generation and model discovery

Smith, M. E.; Griswold, E.; Singh, B. K.; Miri, E.; Eigege, A.; Adelamo, S.; Umaru, J.; Nwodu, K.; Sambo, Y.; Kadimbo, J.; Danyobi, J.; Richards, F. O.; Michael, E.

10.1101/821322 — ecology — Posted on 2019-10-28

579 Social and non-social functions of infant vocalizations

Long, H.; Bowman, D.; Yoo, H.; Burkhardt-Reed, M.; Bene, E.; Oller, D. K.

10.1101/821371 — developmental biology — Posted on 2019-10-28

580 Nanog safeguards early embryogenesis against global activation of maternal β-catenin activity by interfering with TCF factors

He, M.; Zhang, R.; Zhang, F.; Jiao, S.; Ye, D.; Wang, H.; Sun, Y.

10.1101/821702 — developmental biology — Posted on 2019-10-28

581 The spliceosome inhibitors isoginkgetin and pladienolide B induce ATF3-dependent cell death in mouse embryonic fibroblasts

Vanzyl, E. J.; Blackmore, A. B.; Sayed, H.; Rick, K. R. C.; Fernando, P.; McKay, B. C.

10.1101/821363 — cell biology — Posted on 2019-10-28

582 ASNA-1 oxidation induced by cisplatin exposure enhances its cytotoxicity by selectively perturbing tail anchored protein targeting

Raj, D.; Billing, O.; Podraza, A.; Hemmingsson, O.; Kao, G.; Naredi, P.

10.1101/821728 — cell biology — Posted on 2019-10-28

583 6-O-galloylsalidroside, an active ingredient from Acer tegmentosum, ameliorates alcoholic steatosis and liver injury in a mouse model of chronic ethanol consumption

Kim, Y. H.; Woo, D.-C.; Ra, M.; Jung, S.; Ham, S. J.; Kim, K. H.; LEE, Y.

10.1101/821397 — biochemistry — Posted on 2019-10-28

584 TET1-mediated DNA hydroxy-methylation regulates adult remyelination

Moyon, S.; Frawley, R.; Marshall-Phelps, K. L.; Kegel, L.; Bostrand, S. M.; Sadowski, B.; Huang, D.; Jiang, Y.-H.; Lyons, D.; Mobius, W.; Casaccia, P.

10.1101/819995 — neuroscience — Posted on 2019-10-28

585 Binding to the Ribosome by Eukaryotic Initiation Factor 4B Drives Yeast Translational Control in Response to Urea

Liu, X.; Moshiri, H.; Walker, S. E.

10.1101/819672 — molecular biology — Posted on 2019-10-28

586 The Ontogenetic Development of Hemispheric Lateralization During Face Processing: A Functional Magnetic Resonance Imaging Pilot Study in 7- to 9-Year-old Children

Hildesheim, F. E.; Debus, I.; Kessler, R.; Thome, I.; Zimmermann, K. M.; Steintraeter, O.; Sommer, J.; Kamp-Becker, I.; Stark, R.; Jansen, A.

10.1101/818310 — neuroscience — Posted on 2019-10-28

587 High-resolution in vivo identification of miRNA targets by Halo-Enhanced Ago2 Pulldown

Li, X.; Pritykin, Y.; Concepcion, C. P.; Lu, Y.; La Rocca, G.; Zhang, M.; Cook, P. J.; Au, Y. W.; Popow, O.; Paulo, J. A.; Otis, H. G.; Mastroleo, C.; Ogrodowski, P.; Schreiner, R.; Haigis, K. M.; Betel, D.; Leslie, C. S.; Ventura, A.

10.1101/820548 — molecular biology — Posted on 2019-10-28

588 Over 50000 metagenomically assembled draft genomes for the human oral microbiome reveal new taxa

Zhu, J.; Tian, L.; Chen, P.; Han, M.; Song, L.; Tong, X.; Lin, Z.; Liu, X.; Liu, C.; Wang, X.; Lin, Y.; Cai, K.; Hou, Y.; Xu, X.; Yang, H.; Wang, J.; Kristiansen, K.; Xiao, L.; Zhang, T.; Jia, H.; Jie, Z.

10.1101/820365 — microbiology — Posted on 2019-10-28

589 Dynamic changes in natural killer cell subset frequencies in the absence of cytomegalovirus infection

Gyurova, I.; Schlums, H.; Sucharew, H.; Ambroggio, L.; Ochayon, D. E.; Win, H.; Bryceson, Y. T.; Bernstein, D.; Waggoner, S. N.

10.1101/745190 — immunology — Posted on 2019-10-28

590 Integration of ethnobotany and population genetics uncovers the agrobiodiversity of date palms of Siwa Oasis (Egypt) and their importance to the evolutionary history of the species

Gros-Balthazard, M.; Battesti, V.; Ivorra, S.; Paradis, L.; Aberlenc, F.; Zango, O.; Zehdi, S.; Moussouni, S.; Naqvi, S. A.; Newton, C.; Terral, J.-F.

10.1101/820407 — evolutionary biology — Posted on 2019-10-28

591 Road and landscape-context impacts on bird pollination in a Mediterranean-type shrubland of the southeastern Cape Floristic Region

Grobler, B. A.; Campbell, E. E.

10.1101/815324 — ecology — Posted on 2019-10-28

592 CCSeq: Clusters of Colocalized Sequences

Golas, S.

10.1101/818385 — bioinformatics — Posted on 2019-10-28

593 Meta-analytic activation maps can help identify affective processes captured by contrast-based task fMRI: the case of threat-related facial expressions

Kim, M. J.; Knodt, A. R.; Hariri, A. R.

10.1101/820969 — neuroscience — Posted on 2019-10-28

594 Proteolysis and neurogenesis modulated by LNR domain proteins explosion support male differentiation and sacrificial behaviour in the iteroparous crustacean Oithona nana.

Sugier, K.; Laso-Jadart, R.; Kerbache, S.; Kafer, J.; Arif, M.; Bertrand, L.; Labadie, K.; Martins, N.; Orvain, C.; Petit, E.; Poulain, J.; Wincker, P.; Jamet, J.-L.; Alberti, A.; Madoui, M.-A.

10.1101/818179 — molecular biology — Posted on 2019-10-28

595 Host gill attachment enables blood-feeding by the salmon louse (Lepeophtheirus salmonis) chalimus larvae, and alters parasite development and transcriptome

Heggland, E. I.; Dondrup, M.; Nilsen, F.; Eichner, C.

10.1101/815316 — bioinformatics — Posted on 2019-10-28

596 Low atmospheric CO2 induces nocturnal carbon accumulation in the lycophyte genus Isoetes

Suissa, J. S.; Green, W. A.

10.1101/820514 — plant biology — Posted on 2019-10-28

597 {-}{-}Genome wide association study reveals novel candidate genes associated with productivity and disease resistance to Moniliophthora spp. in cacao (Theobroma cacao L.)

Osorio, J. A.; Berdugo, J. A.; Coronado-Silva, R. A.; Baez, E.; Jaimes, Y.; Yockteng, R.

10.1101/820944 — genetics — Posted on 2019-10-28

598 HPV-positive head and neck cancer derived exosomal miR-9 induces M1 macrophage polarization and increases tumor radiosensitivity

Tong, F.; Zhang, S.; Xie, H.; Yan, B.; Wei, L.

10.1101/820282 — cancer biology — Posted on 2019-10-28

599 MAUDE: Inferring expression changes in sorting-based CRISPR screens

de Boer, C. G.; Ray, J. P.; Hacohen, N.; Regev, A.

10.1101/819649 — bioinformatics — Posted on 2019-10-28

600 Unmasking the tissue microecology of ductal carcinoma in situ with deep learning

Narayanan, P. L.; Raza, S. E. A.; Hall, A.; Marks, J. R.; King, L.; West, R. B.; Hernandez, L.; Dowsett, M.; Gusterson, B.; Maley, C.; Hwang, S. E.; Yuan, Y.

10.1101/812735 — pathology — Posted on 2019-10-28

601 The genome of the butternut canker pathogen, Ophiognomonia clavigignenti-juglandacearum shows an elevated number of genes associated with secondary metabolism and protection from host resistance responses in comparison with other members of the Diaporthales

Wu, G.; Shuelke, T.; Broders, K.

10.1101/820977 — genomics — Posted on 2019-10-28

602 Evidence for widespread selection in shaping the genomic landscape during speciation of Populus

Wang, J.; Street, N.; Park, E.-J.; Ingvarsson, P. K.; Liu, J.

10.1101/819219 — evolutionary biology — Posted on 2019-10-28

603 Cross-kingdom regulation of tRNAs/tRFs derived from Chinese yew

Cao, K.-Y.; Yan, T.-M.; Zhang, J.-Z.; Chan, T.-F.; Li, J.; Li, C.; Leung, L.-H.; Jiang, Z.-H.

10.1101/821165 — cell biology — Posted on 2019-10-28

604 Genomic duplications shaped current retrotransposon position distribution in human

Riba, A.; Fumagalli, M. R.; Caselle, M.; Osella, M.

10.1101/819284 — biophysics — Posted on 2019-10-28

605 functionInk: An efficient method to detect functional groups in multidimensional networks reveals the hidden structure of ecological communities

Pascual-Garcia, A.; Bell, T.

10.1101/656504 — bioinformatics — Posted on 2019-10-28

606 De novo indol-3-ylmethyl glucosinolate biosynthesis, and not long-distance transport, contributes to defence of Arabidopsis against powdery mildew

Hunziker, P.; Ghareeb, H.; Wagenknecht, L.; Crocoll, C.; Halkier, B. A.; Lipka, V.; Schulz, A.

10.1101/820720 — plant biology — Posted on 2019-10-28

607 Staufen 1 amplifies pro-apoptotic activation of the unfolded protein response.

Gandelman, M.; Dansithong, W.; Figueroa, K. P.; Paul, S.; Scoles, D. R.; Pulst, S. M.

10.1101/820225 — neuroscience — Posted on 2019-10-28

608 External and Internal Signal-to-noise Ratios Alter Timing and Location of Cortical Activities During Speech-in-noise Perception

Kim, S.; Schwalje, A. T.; Liu, A. S.; Gander, P. E.; McMurray, B.; Griffiths, T. D.; Choi, I.

10.1101/817460 — neuroscience — Posted on 2019-10-28

609 High efficiency blood-brain barrier transport using a VNAR targeting the Transferrin Receptor 1 (TfR1)

Stocki, P.; Wicher, K. B.; Jacobsen, C. L.; Szary, J. M.; Demydchuk, M.; Northall, L.; Moos, T.; Walsh, F. S.; Rutkowski, J. L.

10.1101/816900 — neuroscience — Posted on 2019-10-28

610 Novel regulation from novel interactions: Identification of an RNA sponge that controls the levels, processing and efficacy of the RoxS riboregulator of central metabolism in Bacillus subtilis

Durand, S.; Callan-Siddat, A.; McKeown, J.; Li, S.; Kostova, G.; Fernaud, J. R. H.; Alam, M. T.; Millard, A.; Constaninidou, C.; Condon, C.; Denham, E. L.

10.1101/814905 — microbiology — Posted on 2019-10-28

611 Subthreshold psychosis symptoms associated with molecular genetic risk in a population-based cohort: Findings from Generation Scotland

Docherty, A.; Shabalin, A.; Adkins, D.; Mann, F.; Krueger, R.; Campbell, A.; Hayward, C.; Porteous, D.; McIntosh, A. M.; Kendler, K. S.

10.1101/821041 — genetics — Posted on 2019-10-28

612 Prostaglandins regulate invasive, collective border cell migration

Fox, E. F.; Lamb, M. C.; Melletine, S. Q.; Tootle, T. L.

10.1101/821686 — cell biology — Posted on 2019-10-28

613 The Genomic Stability at the Coding Regions of the Multidrug Transporter Gene ABCB1: Insights into the Development of Alternative Drug Resistance Mechanisms in Human Leukemia Cells

Chen, K. G.; Duran, G. E.; Mogul, M. J.; Wang, Y. C.; Ross, K. L.; Jaffrezou, J.-P.; Huff, L. M.; Fojo, T.; Lacayo, N. J.; Sikic, B. I.

10.1101/820639 — cancer biology — Posted on 2019-10-28

614 A comprehensive conceptual and computational dynamics framework for Autonomous Regeneration Systems

Minh-Thai, T. N.; Samarasinghe, S.; Levin, M.

10.1101/820613 — synthetic biology — Posted on 2019-10-28

615 Perivascular Adipose Tissue: Quantitative analysis by morphometry and stereology in rodents

Carneiro, F. D.; Mello, S. C. S.; Marques, E. B.; Barros, R. B. M.; Scaramello, C. B. V.; Fernandes-Santos, C.

10.1101/820415 — pathology — Posted on 2019-10-28

616 Adaptive Spike-Artifact Removal from Local Field Potentials Uncovers Prominent Beta and Gamma Band Neuronal Synchronization

Banaie Boroujeni, K.; Tiesinga, P.; Womelsdorf, T.

10.1101/820571 — neuroscience — Posted on 2019-10-28

617 Coordination between stabilizing circuits and updating circuits in spatial orientation working memory

Han, R.; Huang, H.-P.; Lee, W.-J.; Chuang, C.-L.; Yen, H.-H.; Kao, W.-T.; Chang, H.-Y.; Lo, C.-C.

10.1101/819185 — neuroscience — Posted on 2019-10-28

618 Changes in freshwater macroinvertebrate richness due to river impoundment in the United States

Trottier, G.; Turgeon, K.; Verones, F.; Boisclair, D.; Bulle, C.; Margni, M.

10.1101/814335 — ecology — Posted on 2019-10-28

619 Multi-region exome sequencing of ovarian teratomas reveals 2N near-diploid genomes, paucity of somatic mutations, and extensive allelic imbalances shared across mature, immature, and disseminated components

Heskett, M. B.; Sanborn, J. Z.; Boniface, C.; Goode, B.; Chapman, J.; Garg, K.; Rabban, J. T.; Zaloudek, C.; Benz, S. C.; Spellman, P. T.; Solomon, D. A.; Cho, R. J.

10.1101/818534 — cancer biology — Posted on 2019-10-28

620 Alternative splicing of circadian clock genes correlates with temperature in field-grown sugarcane

Dantas, L. L. B.; Calixto, C. P. G.; Dourado, M. M.; Carneiro, M. S.; Brown, J. W. S.; Hotta, C. T.

10.1101/718890 — plant biology — Posted on 2019-10-28

621 Tissue-wide integration of mechanical cues promotes efficient auxin patterning

Ramos, J. R. D.; Maizel, A.; Alim, K.

10.1101/820837 — plant biology — Posted on 2019-10-28

622 Bacterial metabolism rescues the inhibition of intestinal drug absorption by food and drug additives

Zou, L.; Spanogiannopoulos, P.; Chien, H.-C.; Pieper, L. M.; Cai, W.; Khuri, N.; Pottel, J.; Vora, B.; Ni, Z.; Tsakalozou, E.; Zhang, W.; Shoichet, B. K.; Giacomini, K. M.; Turnbaugh, P. J.

10.1101/821132 — pharmacology and toxicology — Posted on 2019-10-28

623 Predicting MMSE Score from Finger-Tapping Measurement

Ma, J.

10.1101/817338 — neuroscience — Posted on 2019-10-28

624 Paternally expressed imprinted Snord116 and Peg3 regulate hypothalamic orexin neurons

Pace, M.; Falappa, M.; Freschi, A.; Balzani, E.; Berteotti, C.; Lo Martire, V.; Kaveh, F.; Hovig, E.; Zoccoli, G.; Cerri, M.; Amici, R.; Urbanucci, A.; Tucci, V.

10.1101/820738 — neuroscience — Posted on 2019-10-28

625 N-linked surface glycan biosynthesis, composition, inhibition, and function in cnidarian-dinoflagellate symbiosis

Tivey, T. T.; Parkinson, J. E.; Mandelare, P. E.; Adpressa, D. A.; Peng, W.; Dong, X.; Mechref, Y.; Weis, V. M.; Loesgen, S.

10.1101/820894 — molecular biology — Posted on 2019-10-28

626 Transcriptome responses associated with carbon and energy flows under high salinity stress suggest the overflow of acetyl-CoA from glycolysis and NADPH co-factor induces high lipid accumulation and halotolerance in Chlorella sp. HS2

Yun, J.-H.; Pierrelee, M.; Cho, D.-H.; Kim, U.; Heo, J.; Choi, D.-Y.; Lee, Y. J.; Lee, B.; Kim, H.; Habermann, B. H.; Chang, Y. K.; Kim, H.-S.

10.1101/817551 — microbiology — Posted on 2019-10-28

627 A metallo-beta-lactamase with both beta-lactamase and ribonuclease activity is linked with traduction in giant viruses

Colson, P.; Pinault, L.; Azza, S.; Armstrong, N.; Chabriere, E.; La Scola, B.; Pontarotti, P.; Raoult, D.

10.1101/819797 — microbiology — Posted on 2019-10-28

628 Transcript isoform sequencing reveals widespread promoter-proximal transcriptional termination

Ard, R.; Thomas, Q.; Li, B.; Wang, J.; Pelechano, V.; Marquardt, S.

10.1101/805853 — genomics — Posted on 2019-10-28

629 On the heterozygosity of an admixed population

Boca, S. M.; Huang, L.; Rosenberg, N. A.

10.1101/820241 — genetics — Posted on 2019-10-28

630 Pollen-feeding Heliconius butterflies host distinctive adult-stage microbiomes

Hammer, T. J.; Dickerson, J. C.; McMillan, W. O.; Fierer, N.

10.1101/820829 — ecology — Posted on 2019-10-28

631 Ecotone formation through ecological niche construction: the role of biodiversity and species interactions

Liautaud, K.; Barbier, M.; Loreau, M.

10.1101/740282 — ecology — Posted on 2019-10-28

632 Radial Glial from mammalian developing neocortex can perform symmetric proliferative divisions in vitro

Ledesma-Terron, M.; Peralta-Canadas, N.; Miguez, D. G.

10.1101/707463 — developmental biology — Posted on 2019-10-28

633 Live-Cell Imaging and Quantification of PolyQ Aggregates by Stimulated Raman Scattering of Selective Deuterium Labeling

Miao, K.; Wei, L.

10.1101/820217 — biophysics — Posted on 2019-10-28

634 Robustness and lethality in multilayer biological molecular networks

Liu, X.; Maiorino, E.; Halu, A.; Loscalzo, J.; Gao, J.; Sharma, A.

10.1101/818963 — systems biology — Posted on 2019-10-28

635 Improved, scalable, two-stage, autoinduction of recombinant protein expression in E. coli utilizing phosphate depletion.

Menacho-Melgar, R.; Ye, Z.; Moreb, E. A.; Yang, T.; Efromson, J. P.; Decker, J. S.; Lynch, M. D.

10.1101/820787 — synthetic biology — Posted on 2019-10-28

636 12-oxophytodienoic acid reductase 3 (OPR3) functions as NADPH-dependent α,β-ketoalkene reductase in detoxification and monodehydroascorbate reductase in redox homeostasis

Maynard, D.; Kumar, V.; Spross, J.; Dietz, K.-J.

10.1101/820381 — plant biology — Posted on 2019-10-28

637 Methyl-CpG2-binding protein 2 mediates overlapping mechanisms across brain disorders.

Bach, S.; Ryan, N. M.; Guasoni, P.; Corvin, A. P.; Tropea, D.

10.1101/819573 — neuroscience — Posted on 2019-10-28

638 Fighting or Embracing Multiplicity in Neuroimaging? Neighborhood Leverage versus Global Calibration

Chen, G.; Taylor, P. A.; Cox, R. W.; Pessoa, L.

10.1101/706747 — neuroscience — Posted on 2019-10-28

639 Aging and the encoding of changes in events: The role of neural activity pattern reinstatement

Stawarczyk, D.; Wahlheim, C.; Etzel, J. A.; Snyder, A. Z.; Zacks, J. M.

10.1101/809806 — neuroscience — Posted on 2019-10-28

640 Brain networks processing temporal information in dynamic facial expressions

Skiba, R. M.; Vuilleumier, P.

10.1101/819276 — neuroscience — Posted on 2019-10-28

641 Timing matters: primacy effects of experience on mood revealed using a novel Mood-Machine-Interface

Keren, H.; Zheng, C.; Jangraw, D.; Chang, K.; Vitale, A.; Nielson, D. M.; Rutledge, R.; Pereira, F.; Stringaris, A.

10.1101/815944 — neuroscience — Posted on 2019-10-28

642 C-terminal binding proteins 1 and 2 in traumatic brain injury-induced inflammation and their inhibition as an approach for anti-inflammatory treatment

Li, H.; Zhang, C.; Yang, C.; Blevins, M.; Norris, D. A.; Zhao, R.; Huang, M.

10.1101/820258 — neuroscience — Posted on 2019-10-28

643 Ancestral regulatory mechanisms specify conserved midbrain circuitry in arthropods and vertebrates

Bridi, J. C.; Ludlow, Z. N.; Kottler, B.; Hartmann, B.; Vanden Broeck, L.; Dearlove, J.; Goeker, M.; Strausfeld, N. J.; Callaerts, P.; Hirth, F.

10.1101/820555 — neuroscience — Posted on 2019-10-28

644 Identification of neural oscillations and epileptiform changes in human brain organoids

Samarasinghe, R. A.; Miranda, O. A.; Mitchell, S.; Ferando, I.; Watanabe, M.; Buth, J. E.; Kurdian, A.; Golshani, P.; Plath, K.; Lowry, W. E.; Parent, J. M.; Mody, I.; Novitch, B. G.

10.1101/820183 — neuroscience — Posted on 2019-10-28

645 Molecular Tuning of Styryl Dyes Leads to Versatile and Efficient Plasma Membrane Probes for Cell and Tissue Imaging

Collot, M.; Boutant, E.; Fam, K. T.; Danglot, L.; Klymchenko, A. S.

10.1101/819383 — molecular biology — Posted on 2019-10-28

646 Histone chaperones and modifiers cooperate to maintain heterochromatin integrity following DNA damage.

Fortuny, A.; Chansard, A.; Caron, P.; Chevallier, O.; Leroy, O.; Renaud, O.; Polo, S. E.

10.1101/818914 — molecular biology — Posted on 2019-10-28

647 Carbon metabolism, transcriptome and RNA editome in developmental paths differentiation of Coprinopsis cinerea

Xie, Y.; Chang, J.; Kwan, H. S.

10.1101/819201 — microbiology — Posted on 2019-10-28

648 An improved molecular tool for screening bacterial colonies using GFP expression enhanced by a Dictyostelium sequence

Kondo, T.; Yumura, S.

10.1101/821157 — microbiology — Posted on 2019-10-28

649 New flat embedding method for transmission electron microscopy reveals an unknown mechanism of tetracycline

Wenzel, M.; Dekker, M. P.; Wang, B.; Burggraaf, M. J.; Bitter, W.; van Weering, J. R.; Hamoen, L. W.

10.1101/820191 — microbiology — Posted on 2019-10-28

650 Computational Assessment of the Regulation-Modulating Potential for Noncoding Variants

Shi, F.-Y.; Wang, Y.; Huang, D.; Liang, Y.; Liang, N.; Chen, X.-W.; Gao, G.

10.1101/819409 — genomics — Posted on 2019-10-28

651 Inference with selection, varying population size and evolving population structure: Application of ABC to a forward-backward coalescent process with interactions

Lepers, C.; Billiard, S.; Porte, M.; Meleard, S.; Tran, V. C.

10.1101/819318 — genetics — Posted on 2019-10-28

652 ARMC9 and TOGARAM1 define a Joubert syndrome-associated protein module that regulates axonemal post-translational modifications and cilium stability

Latour, B.; Van De Weghe, J. C.; Rusterholz, T.; Letteboer, S.; Gomez, A.; Shaheen, R.; Gesemann, M.; Grout, M.; van Reeuwijk, J.; van Beersum, S.; Miller, C.; Dempsey, J.; Morsy, H.; Bamshad, M.; Nickerson, D.; Neuhauss, S.; Boldt, K.; Ueffing, M.; Alkuraya, F.; Bachmann-Gagescu, R.; Roepman, R.; Doherty, D.

10.1101/817213 — genetics — Posted on 2019-10-28

653 Reshaping the Hexagone: the genetic landscape of modern France

Biagini, S. A.; Ramos-Luis, E.; Comas, D.; Calafell, F.

10.1101/718098 — genetics — Posted on 2019-10-28

654 Quality-quantity tradeoffs drive functional trait evolution in a model microalgal climate change winner

Collins, S.; Lindberg, R. T.

10.1101/819326 — evolutionary biology — Posted on 2019-10-28

655 Stability of Two-quartet G-quadruplexes and Their Dimers in Atomistic Simulations

Islam, B.; Stadlbauer, P.; Vorlickova, M.; Mergny, J.-L.; Otyepka, M.; Sponer, J.

10.1101/820852 — biophysics — Posted on 2019-10-28

656 In silico investigation of Y220C mutant p53 for lead design

Chowdhury, M. R.; Tiwari, A.; Dubey, G. P.

10.1101/820761 — bioinformatics — Posted on 2019-10-28

657 annonex2embl: automatic preparation of annotated DNA sequences for bulk submissions to ENA

Gruenstaeudl, M.

10.1101/820480 — bioinformatics — Posted on 2019-10-28

658 Incorporating gene expression in genome-wide prediction of chromatin accessibility via deep learning

Liu, Q.; Wong, W. H.; Jiang, R.

10.1101/610642 — bioinformatics — Posted on 2019-10-28

659 Capacitive coupling increases the accuracy of cell-specific tumour ablation by electric fields

Wimberger, T.; Koehler, V. K.; Ehmoser, E. K.; Wassermann, K. J.

10.1101/819375 — bioengineering — Posted on 2019-10-28

660 The impact of delayed switch to second-line antiretroviral therapy on mortality, depending on failure time definition and CD4 count at failure

Bell-Gorrod, H.; Fox, M. P.; Boulle, A.; Prozesky, H.; Wood, R.; Tanser, F.; Davies, M.-A.; Schomaker, M.

10.1101/661629 — epidemiology — Posted on 2019-10-28

661 The First Reconstruction of Intercellular Interaction Network in Mus musculus Immune System

Zahiri, J.; Azadian, S.; Arab, S. S.; Hassan-Sajedi, R.

10.1101/820316 — bioinformatics — Posted on 2019-10-28

662 Accounting for demography in the assessment of wild animal welfare

Hecht, L. B.

10.1101/819565 — ecology — Posted on 2019-10-28

663 Dynamics of the energy seascape can explain intra-specific variations in sea-crossing behaviour of soaring birds

Nourani, E.; Vansteelant, W. M. G.; Byholm, P.; Safi, K.

10.1101/733063 — ecology — Posted on 2019-10-28

664 Label-independent flow cytometry and unsupervised neural network method for de novo clusteringof cell populations

Peuss, R.; Box, A. C.; Accorsi, A.; Wood, C.; Sanchez Alvarado, A.; Rohner, N.

10.1101/603035 — zoology — Posted on 2019-10-28

665 Disruption of Redox Balance Enhances the Effects of BRAF-inhibition in Melanoma Cells

Paudel, B.; Lewis, J. E.; Hardeman, K. N.; Hayford, C. E.; Robbins, C. J.; Codreanu, S. G.; Sherrod, S. D.; McLean, J. A.; Kemp, M. L.; Quaranta, V.

10.1101/818989 — systems biology — Posted on 2019-10-28

666 Local auxin biosynthesis promotes stem cell differentiation and organogenesis in Arabidopsis shoot apex

Yadav, S.; Kumar, H.; Yadav, R.

10.1101/819342 — plant biology — Posted on 2019-10-28

667 Latent Space Phenotyping: Automatic Image-Based Phenotyping for Treatment Studies

Ubbens, J. R.; Cieslak, M.; Prusinkiewicz, P.; Parkin, I.; Ebersbach, J.; Stavness, I.

10.1101/557678 — plant biology — Posted on 2019-10-28

668 Application of the hierarchical bootstrap to multi-level data in neuroscience

Saravanan, V.; Berman, G. J.; Sober, S. J.

10.1101/819334 — neuroscience — Posted on 2019-10-28

669 Robust odor coding across states in piriform cortex requires recurrent circuitry: evidence for pattern completion in an associative network

Bolding, K. A.; Nagappan, S.; Han, B.-X.; Wang, F.; Franks, K. M.

10.1101/694331 — neuroscience — Posted on 2019-10-28

670 A novel workflow to improve multi-locus genotyping of wildlife species: an experimental set-up with a known model system

Gillingham, M.; Montero, B. K.; Wilhelm, K.; Grudzus, K.; Sommer, S.; Santos, P.

10.1101/638288 — molecular biology — Posted on 2019-10-28

671 Infectious bronchitis virus regulates cellular stress granule signaling

Brownsword, M. J.; Doyle, N.; Brocard, M.; Locker, N.; Maier, H. J.

10.1101/819482 — microbiology — Posted on 2019-10-28

672 20-hydroxyecdysone (20E) primes innate immune responses that limit bacteria and malaria parasite survival in Anopheles gambiae

Reynolds, R. A.; Kwon, H.; Smith, R. C.

10.1101/818526 — immunology — Posted on 2019-10-28

673 TIGIT-Fc Promote Immune Tolerance at the Feto-maternal Interface

Fu, W.; Ma, Z.; Lei, C.; Ding, M.; Hu, S.

10.1101/819243 — immunology — Posted on 2019-10-28

674 The effects of sex on extinction dynamics and evolutionary rescue of Chlamydomonas reinhardtii depend on the rate of environmental change

Petkovic, N.; Colegrave, N.

10.1101/817056 — evolutionary biology — Posted on 2019-10-28

675 Mating changes the genital microbiome in both sexes of the common bedbug Cimex lectularius across populations

Bellinvia, S.; Johnston, P. R.; Mbedi, S.; Otti, O.

10.1101/819300 — evolutionary biology — Posted on 2019-10-28

676 Parallel and scalable workflow for the analysis of Oxford Nanopore direct RNA sequencing datasets

Cozzuto, L.; Liu, H.; Pryszcz, L. P.; Hermoso Pulido, T.; Ponomarenko, J.; Novoa, E. M.

10.1101/818336 — bioinformatics — Posted on 2019-10-28

677 GenAPI: a tool for gene absence-presence identification in fragmented bacterial genome sequences

Gabrielaite, M.; Marvig, R. L.

10.1101/658476 — bioinformatics — Posted on 2019-10-28

678 High-content assay for CFTR monitoring: simultaneous quantification of channel function and biogenesis.

Prins, S.; Langron, E.; Hastings, C.; Hill, E. J.; Stefan, A. C.; Griffin, L. D.; Vergani, P.

10.1101/631614 — pharmacology and toxicology — Posted on 2019-10-28

679 Evolution and genetic architecture of disassortative mating at a locus under heterozygote advantage

Maisonneuve, L.; Chouteau, M.; Joron, M.; Llaurens, V.

10.1101/616409 — evolutionary biology — Posted on 2019-10-28

680 Oriented basement membrane fibrils provide a memory for F-actin planar polarization via the Dystrophin-Dystroglycan complex during tissue elongation

Cerqueira Campos, F.; Dennis, C.; Alegot, H.; Fritsch, C.; Isabella, A.; Pouchin, P.; Bardot, O.; Horne-Badovinac, S.; Mirouse, V.

10.1101/591628 — cell biology — Posted on 2019-10-28

681 EMT-induced cell mechanical changes enhance mitotic rounding strength

Hosseini, K.; Taubenberger, A.; Werner, C.; Fischer-Friedrich, E.

10.1101/598052 — biophysics — Posted on 2019-10-28

682 A synthetic peptide library for benchmarking crosslinking mass spectrometry search engines

Beveridge, R.; Stadlmann, J.; Penninger, J. M.; Mechtler, K.

10.1101/821447 — bioinformatics — Posted on 2019-10-28

683 Common homozygosity for predicted loss-of-function variants reveals both redundant and advantageous effects of dispensable human genes

Rausell, A.; Luo, Y.; Lopez, M.; Seeleuthner, Y.; Rapaport, F.; Favier, A.; Stenson, P. D.; Cooper, D. N.; Patin, E.; Casanova, J.-L.; Quintana-Murci, L.; Abel, L.

10.1101/819615 — genetics — Posted on 2019-10-28

684 DNA Methylation Signature on Phosphatidylethanol, not Self-Reported Alcohol Consumption, Predicts Hazardous Alcohol Consumption in Two Distinct Populations

Liang, X.; Justice, A. C.; So-Armah, K.; Krystal, J. H.; Sinha, R.; Xu, K.

10.1101/820910 — bioinformatics — Posted on 2019-10-28

685 Knowledge and interactions of the local community with the herpetofauna in the forest reserve of Quinini (Tibacuy, Cundinamarca)

Rios-Orjuela, J. C.; Falcon-Espitia, N.; Arias-Escobar, A.; Espejo-Uribe, M. J.; Chamorro-Vargas, C. T.

10.1101/814293 — scientific communication and education — Posted on 2019-10-28

686 Adaptive zinc tolerance is supported by extensive gene multiplication and differences in cis-regulation of a CDF transporter in an ectomycorrhizal fungus

Ruytinx, J.; Coninx, L.; Op De Beeck, M.; Arnauts, N.; Rineau, F.; Colpaert, J. V.

10.1101/817676 — genetics — Posted on 2019-10-28

687 Distinct roles of BRCA2 in replication fork protection in response to hydroxyurea and DNA interstrand crosslinks

Rickman, K. A.; Noonan, R.; Lach, F. P.; Sridhar, S.; Wang, A. T.; Abhyankar, A.; Kelly, M.; Auerbach, A. D.; Smogorzewska, A.

10.1101/811968 — molecular biology — Posted on 2019-10-28

688 Chemogenomic screening Identifies the Hsp70 Co-chaperone HDJ2 as a Hub for Anticancer Drug Resistance

Nitika, ; Blackman, J.; Knighton, L.; Takakuwa, J.; Calderwood, S. K.; Truman, A.

10.1101/818427 — cancer biology — Posted on 2019-10-28

689 Influencing factors of telephone-cardiopulmonary resuscitation in China: a qualitative exploration based on managerial perspectives

Zhu, X.; Gui, L.; Xie, X.; Lin, Y.

10.1101/775874 — systems biology — Posted on 2019-10-28

690 IBA endogenous auxin regulates Arabidopsis root system development in a glutathione-dependent way and is important for adaptation to phosphate deprivation.

Trujillo-Hernandez, J. A.; Bariat, L.; Strader, L. C.; Reichheld, J.-P.; Belin, C.

10.1101/818344 — plant biology — Posted on 2019-10-28

691 Novel roles of Kinesin-13 and Kinesin-8 during cell growth and division in the moss Physcomitrella patens

Leong, S. Y.; Edzuka, T.; Goshima, G.; Yamada, M.

10.1101/819722 — cell biology — Posted on 2019-10-28

692 2′-5′-Oligoadenylate synthetase-like protein inhibits intracellular M. tuberculosis replication and promotes proinflammatory cytokine secretion

Leisching, G.; Ali, A.; Cole, V.; Baker, B.

10.1101/821173 — cell biology — Posted on 2019-10-28

693 Conformational Plasticity of the ClpAP AAA+ Protease Couples Protein Unfolding and Proteolysis

Lopez, K. E.; Rizo, A. N.; Tse, E.; Lin, J.; Skull, N. W.; Thwin, A. C.; Lucius, A. L.; Shorter, J.; Southworth, D. R.

10.1101/820209 — biophysics — Posted on 2019-10-28

694 ModiBodies: A computational method for modifying nanobodies to improve their antigen binding affinity and specificity

Hacisuleyman, A.; Erman, B.

10.1101/820373 — bioengineering — Posted on 2019-10-28

695 Electrophysiological characterization of AtAMT1;4, an extraordinarily high affinity ammonium transporter from Arabidopsis thaliana

Bindel, N.; Neuhaeuser, B.

10.1101/820712 — plant biology — Posted on 2019-10-28

696 Leishmania infection triggers hepcidin-mediated proteasomal degradation of Nramp1 resulting in increased phagolysosomal iron availability

Banerjee, S.; Datta, R.

10.1101/820340 — cell biology — Posted on 2019-10-28

697 A microplate screen for metal-binding activity based on a nickel-binding protein from Clostridium carboxidivorans

Diep, P.; Mahadevan, R.; Yakunin, A.

10.1101/820670 — biochemistry — Posted on 2019-10-28

698 Impact of substrate-template stability, temperature, phosphate location, and nick-site base pairs on non-enzymatic DNA ligation: Defining parameters for optimization of ligation rates and yields with carbodiimide activation

Hud, N. V.; Obianyor, C.; Grover, M. A.; Clifton, B.; Newnam, G.

10.1101/821017 — biochemistry — Posted on 2019-10-28

699 Mass spectrometry reveals the chemistry of formaldehyde cross-linking in structured proteins

Tayri-Wilk, T.; Slavin, M.; Zamel, J.; Blass, A.; Cohen, S.; Motzik, A.; Sun, X.; Shalev, D. E.; Ram, O.; Kalisman, N.

10.1101/820779 — biochemistry — Posted on 2019-10-28

700 The Golgi Glycoprotein MGAT4D Protects Testicular Germ Cells From Mild Heat Stress

Akintayo, A.; Liang, M.; Bartholdy, B.; Batista, F.; Aguilan, J.; Prendergast, J.; Sundaram, S.; Stanley, P.

10.1101/818195 — developmental biology — Posted on 2019-10-28

701 Coordination of NDC80 and Ska complexes at the kinetochore-microtubule interface in human cells

Wimbish, R. T.; DeLuca, K. F.; Mick, J. E.; Himes, J.; Sanchez, I. J.; Jeyaprakash, A. A.; DeLuca, J. G.

10.1101/820530 — cell biology — Posted on 2019-10-28

702 Senescence of alveolar stem cells drives progressive pulmonary fibrosis

Yao, C.; Guan, X.; Carraro, G.; Parimon, T.; Liu, X.; Huang, G.; Soukiasian, H.; David, G.; Weight, S. S.; Belperio, J. A.; Chen, P.; Jiang, D.; Noble, P. W.; Stripp, B. R.

10.1101/820175 — cell biology — Posted on 2019-10-28

703 Mimicry embedding for advanced neuralnetwork training of 3D biomedical micrographs

Yakimovich, A.; Huttunen, M.; Samolej, J.; Clough, B.; Yoshida, N.; Mostowy, S.; Frickel, E.; Mercer, J.

10.1101/820076 — bioinformatics — Posted on 2019-10-28

704 Interleukin-2 druggability is modulated by global conformational transitions controlled by a helical capping switch

De Paula, V. S.; Jude, K. M.; Nerli, S.; Glassman, C. R.; Garcia, K. C.; Sgourakis, N. G.

10.1101/821207 — biochemistry — Posted on 2019-10-28

705 Discovery of the prickle patterning on the stem of rose and the mathematical model of the pattern.

Amikura, K.; Ito, H.

10.1101/811281 — developmental biology — Posted on 2019-10-28

706 Regenerative capacity in Drosophila imaginal discs is controlled by damage-responsive, maturity-silenced enhancers

Harris, R. E.; Stinchfield, M. J.; Nystrom, S. L.; McKay, D. J.; Hariharan, I. K.

10.1101/820605 — developmental biology — Posted on 2019-10-28

707 Ribosome profiling at isoform level reveals an evolutionary conserved impact of differential splicing on the proteome

Reixachs-Sole, M.; Ruiz-Orera, J.; Alba, M. M.; Eyras, E.

10.1101/582031 — genomics — Posted on 2019-10-28

708 An unusual amino acid substitution within hummingbird cytochrome c oxidase alters a key proton-conducting channel

Dunn, C. D.; Akpinar, B. A.; Sharma, V.

10.1101/610915 — evolutionary biology — Posted on 2019-10-28

709 Spatial variation in exploited metapopulations obscures risk of collapse

Okamoto, D. K.; Hessing-Lewis, M.; Samhouri, J. F.; Shelton, A. O.; Stier, A.; Levin, P.; Salomon, A. K.

10.1101/315481 — ecology — Posted on 2019-10-28

710 A developmental gene regulatory network for invasive differentiation of the C. elegans anchor cell

Kinney, T. N.; Smith, J. J.; Palmisano, N. J.; Tank, S.; Zhang, W.; Matus, D. Q.

10.1101/691337 — developmental biology — Posted on 2019-10-28

711 Spatio-temporal dynamics of face perception

Muukkonen, I.; Olander, K.; Numminen, J.; Salmela, V.

10.1101/550038 — neuroscience — Posted on 2019-10-28

712 A neurally plausible model for online recognition and postdiction

Wenliang, L. K.; Sahani, M.

10.1101/672089 — neuroscience — Posted on 2019-10-28

713 Kinetics of HTLV-1 reactivation from latency quantified by single-molecule RNA FISH and stochastic modelling

Miura, M.; Dey, S.; Ramanayake, S.; Singh, A.; Rueda, D.; Bangham, C.

10.1101/631697 — microbiology — Posted on 2019-10-28

714 northstar: leveraging cell atlases to identify healthy and neoplastic cells in transcriptomes from human tumors

Zanini, F.; Berghuis, B. A.; Jones, R. C.; Nicolis di Robilant, B.; Nong, R. Y.; Norton, J.; Clarke, M. F.; Quake, S. R.

10.1101/820928 — bioinformatics — Posted on 2019-10-27

715 Analysis of putative cis-regulatory elements regulating blood pressure variation

Nandakumar, P.; Lee, D.; Hoffmann, T. J.; Ehret, G.; Arking, D.; Ranatunga, D.; Li, M.; Grove, M. L.; Boerwinkle, E.; Schaefer, C.; Kwok, P.-Y.; Iribarren, C.; Risch, N.; Chakravarti, A.

10.1101/820522 — genomics — Posted on 2019-10-27

716 ROGUE: an entropy-based universal metric for assessing the purity of single cell population

Liu, B.; Li, C.; Li, Z.; Ren, X.; Zhang, Z.

10.1101/819581 — bioinformatics — Posted on 2019-10-27

717 On the relation of phase separation and Hi-C maps to epigenetics

Singh, P. B.; Newman, A. G.

10.1101/814566 — genetics — Posted on 2019-10-27

718 Profiling the endothelial translatome in vivo using ‘AngioTag’ zebrafish

Miller, M.; Gildea, D. E.; Monzo, K.; Price, L.; Pham, V. N.; Aloi, N.; Stratman, A. N.; Davis, A.; Baxevanis, A. D.; Weinstein, B. M.

10.1101/815696 — developmental biology — Posted on 2019-10-27

719 A simple mass-action model predicts genome-wide protein timecourses from mRNA trajectories during a dynamic response in two strains of S. cerevisiae

Kuo, S.; Egertson, J. D.; Merrihew, G. E.; MacCoss, M. J.; Pollard, D. A.; Rifkin, S. A.

10.1101/805846 — genomics — Posted on 2019-10-27

720 Generation of non-integrated iPSCs from achondroplasia patient skin and urine and gene correction in them using CRISPR-Cas9

Qin, Y.

10.1101/801415 — genetics — Posted on 2019-10-27

721 Cryptic patterns of speciation in cryptic primates: microendemic mouse lemurs and the multispecies coalescent

Schussler, D.; Salmona, J.; Blanco, M. B.; Poelstra, J.; Tiley, G. P.; Andriambeloson, J. B.; Bouchez, O.; Campbell, C. R.; Etter, P. D.; Iribar, A.; Hohenlohe, P. A.; Hunnicutt, K. E.; Johnson, E. A.; Larsen, P. A.; Mantilla-Contreras, J.; Manzi, S.; Miller, A.; Randrianambinina, B.; Rasolofoson, D. W.; Stahlke, A. R.; Weisrock, D.; Williams, R. C.; Chikhi, L.; Louis, E. E.; Yoder, A. D.; Radespiel, U.

10.1101/742361 — evolutionary biology — Posted on 2019-10-27

722 Ancient DNA reconstructs the genetic legacies of pre-contact Puerto Rico communities

Nieves-Colon, M. A.; Pestle, W. J.; Reynolds, A. W.; Llamas, B.; de la Fuente, C.; Fowler, K.; Skerry, K.; Crespo-Torres, E.; Bustamante, C. D.; Stone, A. C.

10.1101/765685 — genomics — Posted on 2019-10-27

723 Video-based motion-resilient reconstruction of 3D position for fNIRS/EEG head mounted probes

Jaffe-Dax, S.; Bermano, A. H.; Erel, Y.; Emberson, L. L.

10.1101/621615 — neuroscience — Posted on 2019-10-27

724 The rodent hippocampus as a bilateral structure: A review of hemispheric lateralization

Jordan, J. T.

10.1101/150193 — neuroscience — Posted on 2019-10-26

725 Should virus capsids assemble perfectly? Theory and observation of defects

Spiriti, J.; Conway, J.; Zuckerman, D. M.

10.1101/684563 — biophysics — Posted on 2019-10-26

726 Scalable Spike Source Localization in Extracellular Recordings using Amortized Variational Inference

Hurwitz, C. L.; Xu, K.; Srivastava, A.; Buccino, A. P.; Hennig, M. H.

10.1101/656389 — neuroscience — Posted on 2019-10-26

727 Chromatin information content landscapes inform transcription factor and DNA interactions

D'Oliveira Albanus, R.; Kyono, Y.; Hensley, J.; Varshney, A.; Orchard, P.; Kitzman, J. O.; Parker, S. C. J.

10.1101/777532 — genomics — Posted on 2019-10-26

728 Genetic diversity and haplotypic structure of a Saudi population sample using Investigator Argus X-12 amplification kit

Messaoudi, S. A.; Ramesh, S.; Alsaleh, A.; Albajjah, M.; Al Snan, N.; Chaudhary, A. R.

10.1101/760819 — genetics — Posted on 2019-10-26

729 Circadian modulation of neurons and astrocytes controls synaptic plasticity in hippocampal area CA1

McCauley, J.; Petroccione, M.; D'Brant, L.; Todd, G.; Affinnih, N.; Wisnoski, J.; Zahid, S.; Shree, S.; Sousa, A.; Migliore, R.; Brazhe, A.; Leapman, R.; Khmaladze, A.; Semyanov, A.; Migliore, M.; Scimemi, A.

10.1101/666073 — neuroscience — Posted on 2019-10-26

730 Evidence for extensive anaerobic dechlorination and transformation of the pesticide chlordecone (C10Cl10O) by indigenous microbes in microcosms from Guadeloupe soil

Lomheim, L.; Laquitaine, L.; Rambinaising, S.; Flick, R.; Starostine, A.; Jean-Marius, C.; Gaspard, S.; Edwards, E. A.

10.1101/650200 — microbiology — Posted on 2019-10-26

731 Bi-directional Mendelian randomization of epithelial ovarian cancer and schizophrenia and uni-directional Mendelian randomization of schizophrenia on circulating glycerophosphocholine metabolites

Adams, C. D.; Neuhausen, S. L.

10.1101/655894 — genetics — Posted on 2019-10-26

732 High transcriptional error rates vary as a function of gene expression level

Meer, K. M.; Nelson, P. G.; Xiong, K.; Masel, J.

10.1101/554329 — evolutionary biology — Posted on 2019-10-26

733 When do individuals maximize their inclusive fitness?

Lehmann, L.; Rousset, F.

10.1101/624775 — evolutionary biology — Posted on 2019-10-26

734 The reconstruction and functional mapping of a recurrent microcircuit in Drosophila mushroom body

Xia, W. G.; Yu, Z. B.; Xiong, W. S.; Kai, Y.; Jian, Z. J.; Yang, X.; Ming, L. Y.; Jun, S. L.

10.1101/819227 — neuroscience — Posted on 2019-10-26

735 Combinatorial chromatin dynamics foster accurate cardiopharyngeal fate choices

Racioppi, C.; Wiechecki, K. A.; Christiaen, L.

10.1101/546945 — developmental biology — Posted on 2019-10-26

736 Transient deSUMOylation of IRF2BP proteins controls early transcription in EGFR signaling

Barysch, S. V.; Stankovic-Valentin, N.; Karaca, S.; Doppel, J.; Nait Achour, T.; Sticht, C.; Urlaub, H.; Melchior, F.

10.1101/819730 — molecular biology — Posted on 2019-10-26

737 Insights into the origin of metazoan multicellularity from predatory unicellular relatives of animals

Tikhonenkov, D. V.; Hehenberger, E.; Esaulov, A. S.; Belyakova, O. I.; Mazei, Y. A.; Mylnikov, A. P.; Keeling, P. J.

10.1101/817874 — evolutionary biology — Posted on 2019-10-26

738 Ecological drivers of jellyfish blooms – the complex life history of a ‘well-known’ medusa (Aurelia aurita)

Goldstein, J.; Steiner, U. K.

10.1101/102814 — ecology — Posted on 2019-10-26

739 Detecting and Isolating Mass Balance Errors in Reaction Based Models in Systems Biology

Shin, W.; Hellerstein, J. L.

10.1101/816876 — systems biology — Posted on 2019-10-26

740 Replay as wavefronts and theta sequences as bump oscillations in a grid cell attractor network

Kang, L.; DeWeese, M. R.

10.1101/565440 — neuroscience — Posted on 2019-10-26

741 A Novel PHOX/CD38/MCOLN1/TFEB Axis Important For Macrophage Activation During Bacterial Phagocytosis

Najibi, M.; Moreau, J. A.; Honwad, H. H.; Irazoqui, J.

10.1101/669325 — immunology — Posted on 2019-10-26

742 An agent-based framework for improving wildlife disease surveillance: A case study of chronic wasting disease in Missouri white-tailed deer

Belsare, A. V.; Gompper, M. E.; Keller, B.; Sumners, J.; Hansen, L.; Millspaugh, J.

10.1101/478610 — ecology — Posted on 2019-10-26

743 A dynamic cell recruitment process drives growth of the Drosophila wing by overscaling the Vestigial expression pattern

Munoz Nava, L. M.; Alvarez, H. A.; Flores-Flores, M.; Chara, O.; Nahmad, M.

10.1101/688796 — developmental biology — Posted on 2019-10-26

744 Regional dynamics of fractal dimension of the left ventricular endocardium from cine computed tomography images

Manohar, A.; Rossini, L.; Colvert, G.; Vigneault, D. M.; Contijoch, F.; Chen, M. Y.; del Alamo, J. C.; McVeigh, E. R.

10.1101/791731 — bioengineering — Posted on 2019-10-26

745 Adaptive meiotic drive in selfing populations with heterozygote advantage

Brud, E.

10.1101/666180 — evolutionary biology — Posted on 2019-10-26

746 spectrum_utils: A Python package for mass spectrometry data processing and visualization

Bittremieux, W.

10.1101/725036 — bioinformatics — Posted on 2019-10-26

747 Proper chromosome alignment depends on BRCA2 phosphorylation by PLK1

Ehlen, A.; Martin, C.; Miron, S.; Julien, M.; Theillet, F. X.; Ropars, V.; Sessa, G.; Beaurepere, R.; Boucherit, V.; Duchambon, P.; El Marjou, A.; Zinn Justin, S.; Carreira, A.

10.1101/265934 — cell biology — Posted on 2019-10-26

748 Characterisation of a second gain of function EDAR variant, encoding EDAR380R, in East Asia

Riddell, J.; Basu Mallick, C.; Jacobs, G. S.; Schoenebeck, J. J.; Headon, D. J.

10.1101/813063 — genetics — Posted on 2019-10-25

749 Cre-assisted Fine-mapping of Neural Circuits using Orthogonal Split Inteins

Luan, H.; Kuzin, A.; Odenwald, W.; White, B.

10.1101/818872 — neuroscience — Posted on 2019-10-25

750 Genetic access to functionally distinct ganglion cell types in the Somatostatin-IRES-Cre mouse retina

Fransen, J. W.; Borghuis, B.

10.1101/819441 — neuroscience — Posted on 2019-10-25

751 Plasmodiophora brassicae in its environment-effects of temperature and light on resting spore survival in soil

Zahr, K.; Sarkes, A.; Yang, Y.; Zhou, Q.; Feindel, D.; Harding, M.; Feng, J.

10.1101/819524 — microbiology — Posted on 2019-10-25

752 Bayesian modelling of high-throughput sequencing assays with malacoda

Ghazi, A. R.; Kong, X.; Chen, E.; Edelstein, L. C.; Shaw, C. A.

10.1101/819466 — bioinformatics — Posted on 2019-10-25

753 Pathological modeling of TBEV infection reveals differential innate immune responses in human neurons and astrocytes that correlate with their susceptibility to infection.

Fares, M.; Cochet-Bernoin, M.; Gonzalez, G.; Montero-Menei, C.; Blanchet, O.; Benchoua, A.; Boissart, C.; Lecollinet, S.; Richardson, J.; Haddad, N.; Coulpier, M.

10.1101/819540 — microbiology — Posted on 2019-10-25

754 Genetic profiling of Mycobacterium tuberculosis \"modern\" Beijing strains from Southwest Colombia

Nieto Ramirez, L. M.; Ferro, B. E.; Diaz, G.; Anthony, R. M.; van Soolingen, D.; de Beer, J.

10.1101/819425 — microbiology — Posted on 2019-10-25

755 Coordination among neighbors improves the efficacy of Zika control despite economic costs

Lemanski, N. J.; Schwab, S. R.; Fonseca, D. M.; Fefferman, N. H.

10.1101/819490 — ecology — Posted on 2019-10-25

756 Mapping the Host-Pathogen Space to Link Longitudinal and Cross-sectional Biomarker Data: Leptospira Infection in California Sea Lions (Zalophus californianus) as a Case Study

Prager, K. C.; Buhnerkempe, M. G.; Greig, D. J.; Orr, A. J.; Jensen, E. D.; Gomez, F.; Galloway, R. L.; Wu, Q.; Gulland, F. M.; Lloyd-Smith, J. O.

10.1101/819532 — ecology — Posted on 2019-10-25

757 Behaviour and cold hardiness of the purple stem borer in winter, colonizing more northerly latitudes

Huang, J.; Li, G.; Lei, H.; Fan, C.; Tian, C.; Chen, Q.; Huang, B.; Li, H.; Lu, Z.; Feng, H.

10.1101/819417 — animal behavior and cognition — Posted on 2019-10-25

758 Differences in splicing defects between the grey and white matter in myotonic dystrophy type 1

Nishi, M.; Kimura, T.; Furuta, M.; Suenaga, K.; Matsumura, T.; Fujimura, H.; Jinnai, K.; Yoshikawa, H.

10.1101/819433 — molecular biology — Posted on 2019-10-25

759 GSMN-ML- a genome scale metabolic network reconstruction of the obligate human pathogen Mycobacterium leprae

Borah, K.; Kearney, J.; Banerjee, R.; Vats, P.; Wu, H.; Dahale, S.; Manjari, S.; Joshi, R.; Bonde, B.; Ojo, O.; Lahiri, R.; Williams, D.; McFadden, J.

10.1101/819508 — microbiology — Posted on 2019-10-25

760 Common alleles of CMT2 and NRPE1 are major determinants of de novo DNA methylation variation in Arabidopsis thaliana

Sasaki, E.; Kawakatsu, T.; Ecker, J.; Nordborg, M.

10.1101/819516 — genomics — Posted on 2019-10-25

761 Phylogeography of two Andean frogs: Test of vicariance versus elevational gradient models of diversification

Koscinski, D.; Handford, P.; Tubaro, P. L.; Li, P.; Lougheed, S. C.

10.1101/819557 — evolutionary biology — Posted on 2019-10-25

762 Assortment of Stauntonia hexaphylla and Cornus officinalis protect against testosterone-induced benign prostatic hyperplasia through anti-inflammatory and anti-proliferative activity

Jung, J. Y.; Karunasagara, S. S. L.; Hong, G. L.; Jung, D. Y.; Koh, E. J.; Cho, K. W.; Park, S. S.; Kim, K. H.

10.1101/819474 — cancer biology — Posted on 2019-10-25

763 Alcohol Effects on Globus Pallidus Connectivity: Role of Impulsivity and Binge Drinking

Fede, S.; Abrahao, K. P.; Cortes, C. R.; Grodin, E. N.; Schwandt, M. L.; George, D. T.; Diazgranados, N.; Ramchandani, V. A.; Lovinger, D. M.; Momenan, R.

10.1101/819458 — neuroscience — Posted on 2019-10-25

764 RFEX: Simple Random Forest Model and Sample Explainer for non-Machine Learning experts

Petkovic, D.; Alavi, A.; Cai, D.; Yang, J.; Barlaskar, S.

10.1101/819078 — bioinformatics — Posted on 2019-10-25

765 Reorganization of the Primate Dorsal Horn in Response to a Deafferentation Lesion Affecting Hand Function

Fisher, K. M.; Garner, J.; Darian-Smith, C. J.

10.1101/818716 — neuroscience — Posted on 2019-10-25

766 Clonal evaluation of prostate cancer molecular heterogeneity in biopsy samples by dual immunohistochemistry and dual RNA in situ hybridization

Palanisamy, N.; Arachchige, P. D.; Carskadon, S.; Li, J.; Loveless, I.; Alhamar, M.; Peabody, J. O.; Stricker, H.; Chitale, D. A.; Rogers, C. G.; Menon, M.; Bismar, T. A.; Gupta, N. S.; Williamson, S. R.

10.1101/818880 — cancer biology — Posted on 2019-10-25

767 Oxygenation properties of hemoglobin and the evolutionary origins of isoform multiplicity in an amphibious air-breathing fish, the blue-spotted mudskipper (Boleophthalmus pectinirostris)

Storz, J.; Natarajan, C.; Grouleff, M.; Vandewege, M.; Hoffmann, F.; You, X.; Venkatesh, B.; Fago, A.

10.1101/818807 — physiology — Posted on 2019-10-25

768 Cumulative effects of social stress on reward-guided actions and prefrontal cortical activity

Barthas, F.; Hu, M. Y.; Siniscalchi, M. J.; Ali, F.; Mineur, Y. S.; Picciotto, M. R.; Kwan, A. C.

10.1101/817361 — neuroscience — Posted on 2019-10-25

769 Disruption of Nrxn1α within excitatory forebrain circuits drives value-based dysfunction

Alabi, O. O.; Robinson, M.; Fortunato, M. P.; Kable, J. W.; Fuccillo, M. V.

10.1101/818419 — neuroscience — Posted on 2019-10-25

770 Developmental Changes in EEG Phase Amplitude Coupling and Phase Preference over the First Three Years After Birth

Mariscal, M. G.; Levin, A. R.; Gabard-Durnam, L. J.; Tager-Flusberg, H.; Nelson, C. A.

10.1101/818583 — neuroscience — Posted on 2019-10-25

771 Inhibition of protein synthesis in M1 of monkeys disrupts performance of sequential movements guided by memory

Ohbayashi, M.

10.1101/818674 — neuroscience — Posted on 2019-10-25

772 Patterns, predictors, and consequences of dominance in hybrids

Thompson, K. A.; Urquhart-Cronish, M.; Whitney, K. D.; Rieseberg, L. H.; Schluter, D.

10.1101/818658 — evolutionary biology — Posted on 2019-10-25

773 On the asymptotic equivalence between the Radon and the Hough transforms of digital images

aramini, r.; delbary, f.; beltrametti, m. c.; estatico, c.; piana, m.; massone, a. m.

10.1101/818799 — bioengineering — Posted on 2019-10-25

774 Neuropeptide relay between SIFa signaling controls the experience-dependent mating duration of male Drosophila

Wong, K. C.; Schweizer, J.; Nguyen, K.-N. H.; Atieh, S.; Kim, W. J.

10.1101/819045 — animal behavior and cognition — Posted on 2019-10-25

775 Genome assembly of the common pheasant Phasianus colchicus, a model for speciation and ecological genomics

Liu, Y.; Liu, S.; Zhang, N.; Chen, D.; Que, P.; Liu, N.; Höglund, J.; Zhang, Z.; Wang, B.

10.1101/818666 — genomics — Posted on 2019-10-25

776 Genome-wide association study of cryptosporidiosis in infants implicates PRKCA

Wojcik, G. L.; Korpe, P. S.; Marie, C.; Mychaleckyj, J.; Kirkpatrick, B. D.; Rich, S. S.; Concannon, P.; Faruque, A. S. G.; Haque, R.; Petri, W.; Duggal, P.

10.1101/819052 — genetics — Posted on 2019-10-25

777 Machine Learning Approaches Identify Genes Containing Spatial Information from Single-Cell Transcriptomics Data.

Loher, P.; Karathanasis, N.

10.1101/818393 — bioinformatics — Posted on 2019-10-25

778 ROS production by localized SCHENGEN receptor module drives lignification at subcellular precision

Fujita, S.; Bellis, D. D.; Edel, K. H.; Köster, P.; Andersen, T. G.; Schmid-Siegert, E.; Tendon, V. D.; Pfister, A.; Marhavy, P.; Ursache, R.; Doblas, V. G.; Daraspe, J.; Creff, A.; Ingram, G.; Kudla, J.; Geldner, N.

10.1101/818997 — plant biology — Posted on 2019-10-25

779 Synthetic biogenesis of chromoplasts from leaf chloroplasts

LLORENTE, B.; TORRES-MONTILLA, S.; MORELLI, L.; FLOREZ-SARASA, I.; EZQUERRO, M.; D'ANDREA, L.; MAJER, E.; TRONCOSO, A.; FERNIE, A.; DAROS, J. A.; RODRIGUEZ-CONCEPCION, M.

10.1101/819177 — plant biology — Posted on 2019-10-25

780 The Toxin Cercosporin is a Virulence Factor for Infection of Coffee by Cercospora coffeicola

Souza, A.; Herrero, S.; Daub, M.

10.1101/818328 — plant biology — Posted on 2019-10-25

781 A theophylline-responsive riboswitch regulates expression of nuclear-encoded genes in Arabidopsis

Shanidze, N.; Lenkeit, F.; Hartig, J. S.; Funck, D.

10.1101/818633 — plant biology — Posted on 2019-10-25

782 Characteristics of sequential activity in networks with temporally asymmetric Hebbian learning

Gillett, M.; Pereira, U.; Brunel, N.

10.1101/818773 — neuroscience — Posted on 2019-10-25

783 The Dynamics of Resting-State Alpha Oscillations Predict Individual Differences in Creativity

Prent, N.; Smit, D. J.

10.1101/818229 — neuroscience — Posted on 2019-10-25

784 Somatosensory corticospinal tract axons sprout within the cervical cord following a dorsal root/dorsal column spinal injury in the rat.

McCann, M.; Fisher, K. M.; Ahloy-Dallaire, J.; Darian-Smith, C. J.

10.1101/818682 — neuroscience — Posted on 2019-10-25

785 Detection and discrimination of influenza B Victoria lineage deletion variant viruses by real-time RT-PCR

Shu, B.; Kirby, M. K.; Warnes, C.; Sessions, W. M.; Davis, W. G.; Liu, J.; Wilson, M. M.; Wentworth, D. E.; Barnes, J. R.

10.1101/818617 — molecular biology — Posted on 2019-10-25

786 Establishing Rod-Shape from Spherical, Peptidoglycan-Deficient Bacterial Spores

Zhang, H.; Mulholland, G. A.; Seef, S.; Zhu, S.; Liu, J.; Mignot, T.; Nan, B.

10.1101/818641 — microbiology — Posted on 2019-10-25

787 Contribution of fungal microbiome to intestinal physiology, early-life immune development and mucosal inflammation in mice

van Tilburg Bernardes, E.; Kucharova Pettersen, V.; Gutierrez, M. W.; Laforest-Lapointe, I.; Jendzjowsky, N. G.; Cavin, J.-B.; Vicentini, F. A.; Keenan, C. M.; Ramay, H. R.; Samara, J.; MacNaughton, W. K.; Wilson, R. J.; Kelly, M. M.; McCoy, K. D.; Sharkey, K. A.; Arrieta, M.-C.

10.1101/819979 — microbiology — Posted on 2019-10-25

788 Bacterial secondary metabolite biosynthetic potential in soil varies with phylum, depth, and vegetation type

Sharrar, A.; Crits-Christoph, A.; Meheust, R.; Diamond, S.; Starr, E.; Banfield, J.

10.1101/818815 — microbiology — Posted on 2019-10-25

789 Comprehensive analysis of antiviral adaptive immunity formation and reactivation down to single-cell level

Minervina, A. A.; Pogorelyy, M. V.; Komech, E. A.; Karnauhov, V. K.; Bacher, P.; Rosati, E.; Franke, A.; Chudakov, D. M.; Mamedov, I. Z.; Lebedev, Y. B.; Mora, T.; Walczak, A. M.

10.1101/820134 — immunology — Posted on 2019-10-25

790 Insights into the origin of metazoan multicellularity from predatory unicellular relatives of animals

Tikhonenkov, D. V.; Hehenberger, E.; Esaulov, A. S.; Belyakova, O. I.; Mazei, Y. A.; Mylnikov, A. P.; Keeling, P. J.

10.1101/817874 — evolutionary biology — Posted on 2019-10-25

791 A specialized deceptive pollination system based on elaborate mushroom mimicry

Kakishima, S.; Tuno, N.; Hosaka, K.; Okamoto, T.; Ito, T.; Okuyama, Y.

10.1101/819136 — ecology — Posted on 2019-10-25

792 Single-cell dissection of a rare human prostate basal cell carcinoma

Su, X.; Long, Q.; Bo, J.; Shi, Y.; Zhao, L.-N.; Lin, Y.; Luo, Q.; Ghazanfar, S.; Zhang, C.; Liu, Q.; Wang, L.; He, K.-Y.; He, J.; Cui, X.-F.; Yang, J. Y. H.; Han, Z.-G.; Sha, J.; Yang, G.

10.1101/818260 — cancer biology — Posted on 2019-10-25

793 Experimental phasing of MicroED data using radiation damage

Martynowycz, M. W.; Hattne, J.; Gonen, T.

10.1101/819086 — biophysics — Posted on 2019-10-25

794 Essential Metabolic Routes as a Way to ESKAPE from Antibiotic Resistance

Barra, A. L. C.; Dantas, L. d. O. C.; Morao, L. G.; Gutierrez, R. F.; Polikarpov, I.; Wrenger, C.; Nascimento, A. S.

10.1101/817015 — biochemistry — Posted on 2019-10-25

795 Accurate MS-based Rab10 phosphorylation stoichiometry determination as readout for LRRK2 activity in Parkinson’s disease

Karayel, O.; Tonelli, F.; Virreira Winter, S.; Geyer, P. E.; Fan, Y.; Sammler, E. M.; Alessi, D. R.; Steger, M.; Mann, M.

10.1101/819607 — biochemistry — Posted on 2019-10-25

796 Caenorhabditis elegans AF4/FMR2 family homolog affl-2 is required for heat shock induced gene expression

Walton, S. J.; Wang, H.; Quintero-Cadena, P.; Bateman, A.; Sternberg, P. W.

10.1101/817833 — genetics — Posted on 2019-10-25

797 Glutamate-ammonia ligase promotes lung cancer cell growth through an enzyme independent upregulation of CaMK2G under a glutamine-sufficient condition

Zhao, J.; Zeng, X.; Hou, S.

10.1101/818575 — cancer biology — Posted on 2019-10-25

798 High-Throughput Translational Profiling with riboPLATE-seq

Metz, J. B.; Hornstein, N. J.; Das Sharma, S.; Worley, J.; Sims, P. A.

10.1101/819094 — systems biology — Posted on 2019-10-25

799 A simple method for spray-on gene editing in planta.

Doyle, C.; Higginbottom, K.; Swift, T. A.; Winfield, M.; Bellas, C.; Benito-Alifonso, D.; Fletcher, T.; Galan, C. M.; Edwards, K.; Whitney, H. M.

10.1101/805036 — plant biology — Posted on 2019-10-25

800 Exploration of the role of CHRNA5-A3-B4 genotype in smoking behaviours

Lassi, G.; Mahedy, L.; Oliveira, A. S. F.; Dyer, M. L.; Drax, K.; Dawkins, L.; Rennard, S.; Matcham, J.; Timpson, N. J.; Eisen, T.; Munafo, M. R.

10.1101/818252 — neuroscience — Posted on 2019-10-25

801 Circulating glutamine and Alzheimer’s disease: a Mendelian randomization study

Adams, C. D.

10.1101/819029 — neuroscience — Posted on 2019-10-25

802 Fibrotic scar after experimental autoimmune encephalomyelitis inhibits oligodendrocyte differentiation

Yahn, S. L.; Li, J.; Goo, I.; Gao, H.; Brambilla, R.; Lee, J. K.

10.1101/819128 — neuroscience — Posted on 2019-10-25

803 Stimulus blanking reveals transsaccadic feature transfer

Grzeczkowski, L.; Deubel, H.; Szinte, M.

10.1101/819110 — neuroscience — Posted on 2019-10-25

804 A portable and cost-effective microfluidic system for massively parallel single-cell transcriptome profiling

Liu, C.; Wu, T.; Fan, F.; Liu, Y.; Wu, L.; Junkin, M.; Wang, Z.; Yu, Y.; Wang, W.; Wei, W.; Yuan, Y.; Wang, M.; Cheng, M.; Wei, X.; Xu, J.; Shi, Q.; Liu, S.; Chen, A.; Wang, O.; Ni, M.; Zhang, W.; Shang, Z.; Lai, Y.; Guo, P.; Ward, C.; Volpe, G.; Wang, L.; Zheng, H.; Liu, Y.; Peters, B. A.; Beecher, J.; Zhang, Y.; Esteban, M. A.; Hou, Y.; Xu, X.; Chen, I.-J.; Liu, L.

10.1101/818450 — genomics — Posted on 2019-10-25

805 Contribution of synthetic lethality to cancer risk, onset age, and tumor suppressor specificity across human tissues

Cheng, K.; Nair, N. U.; Lee, J. S.; Ruppin, E.

10.1101/818922 — cancer biology — Posted on 2019-10-25

806 Glutathione Peroxidase 8 (GPX8)-IL6 axis is essential in maintaining breast cancer mesenchymal stem-like state and aggressive phenotype

Khatib, A.; Balakrishnan, S.; Ben-Yosef, M.; Oren, G.; Abu Rmaileh, A.; Schlesinger, M.; Axelrod, J. H.; Lichtenstein, M.; Shaul, Y. D.

10.1101/818245 — cancer biology — Posted on 2019-10-25

807 Cooperation between MYC and β-catenin in liver tumorigenesis requires Yap/Taz

Bisso, A.; Filipuzzi, M.; Gamarra Figueroa, G. P.; Brumana, G.; Biagioni, F.; Doni, M.; Ceccotti, G.; Tanaskovic, N.; Morelli, M. J.; Pendino, V.; Chiacchiera, F.; Pasini, D.; Olivero, D.; Campaner, S.; Sabo, A.; Amati, B.

10.1101/819631 — cancer biology — Posted on 2019-10-25

808 Deformability based sorting of stored red blood cells reveals donor-dependent aging curves

Islamzada, E.; Matthews, K.; Guo, Q.; Santoso, A. T.; Duffy, S. P.; Scott, M. D.; Ma, H.

10.1101/818765 — bioengineering — Posted on 2019-10-25

809 Sex-dependent macromolecule and nanoparticle delivery in experimental brain injury

Bharadwaj, V. N.; Copeland, C.; Mathew, E.; Newbern, J.; Anderson, T. R.; Lifshitz, J.; Kodibagkar, V. D.; Stabenfeldt, S. E.

10.1101/817296 — bioengineering — Posted on 2019-10-25

810 Divergent DNA methylation signatures of juvenile seedlings grafts and adult apple trees

Perrin, A.; Daccord, N.; Roquis, D.; Celton, J.-M.; Vergne, E.; Bucher, E.

10.1101/818690 — plant biology — Posted on 2019-10-25

811 Meta-analytic clustering dissociates brain activity and behavior profiles across reward processing paradigms

Flannery, J. S.; Riedel, M. C.; Bottenhorn, K. L.; Poudel, R.; Salo, T.; Hill-Bowen, L. D.; Laird, A. R.; Sutherland, M. T.

10.1101/818948 — neuroscience — Posted on 2019-10-25

812 jYCaMP: An optimized calcium indicator for two-photon imaging at fiber laser wavelengths

Mohr, M. A.; Bushey, D.; Aggarwal, A.; Marvin, J.; Jimenez Marquez, E.; Liang, Y.; Patel, R.; Macklin, J.; Lee, C.-Y.; Kim, D.; Wong, A. M.; Looger, L. L.; Schreiter, E. R.; Podgorski, K.

10.1101/816660 — neuroscience — Posted on 2019-10-25

813 Metabolic specializations within a bacterial community to create living rocks

Waterworth, S. C.; Isemonger, E. W.; Rees, E. R.; Dorrington, R. A.; Kwan, J. C.

10.1101/818625 — microbiology — Posted on 2019-10-25

814 Liver X Receptor regulates Th17 and RORγt+ Treg cells by distinct mechanisms

Parigi, S. M.; Das, S.; Frede, A.; Cardoso, R. F.; Tripathi, K. P.; Donas, C.; Hu, Y. O. O.; Engstrand, L.; Gustafsson, J.-A.; Villablanca, E. J.

10.1101/818369 — immunology — Posted on 2019-10-25

815 A meta-analysis reveals temperature, dose, life stage, and taxonomy influence host susceptibility to a fungal parasite

Sauer, E. L.; Cohen, J. M.; Lajeunesse, M. J.; McMahon, T. A.; Civitello, D. J.; Knutie, S. A.; Nguyen, K.; Roznik, E. A.; Sears, B. F.; Bessler, S.; Delius, B. K.; Halstead, N.; Venesky, M. D.; Young, S.; Rohr, J. R.

10.1101/818377 — ecology — Posted on 2019-10-25

816 Glucocorticoids mediate egg rejection in a brood parasite host

Abolins-Abols, M.; Hauber, M. E.

10.1101/818864 — animal behavior and cognition — Posted on 2019-10-25

817 Detecting and Isolating Mass Balance Errors in Reaction Based Models in Systems Biology

Shin, W.; Hellerstein, J. L.

10.1101/816876 — systems biology — Posted on 2019-10-25

818 PLETHORA and WOX5 interaction and subnuclear localisation regulates Arabidopsis root stem cell maintenance

Burkart, R. C.; Strotmann, V. I.; Kirschner, G. K.; Akinci, A.; Czempik, L.; Maizel, A.; Weidtkamp-Peters, S.; Stahl, Y.

10.1101/818187 — plant biology — Posted on 2019-10-25

819 Co-expression clustering across flower development identifies modules and candidate genes for diverse floral forms in Achimenes (Gesneriaceae)

Roberts, W. R.; Roalson, E. H.

10.1101/817221 — plant biology — Posted on 2019-10-25

820 Respiratory supercomplexes provide metabolic efficiency in zebrafish

Garcia-Poyatos, C.; Cogliati, S.; Calvo, E.; Hernansanz-Agustin, P.; Lagarrigue, S.; Magini, R.; Botos, M.; Langa, X.; Amati, F.; Vazquez, J.; Mercader, N.; Enriquez, J. A.

10.1101/818286 — physiology — Posted on 2019-10-25

821 Identification of Novel miRNAs in Mouse Embryonic Stem Cells, Embryonic Fibroblasts, and Reprogrammed Pluripotent Cells

Zhao, B.; Fan, C.

10.1101/817395 — molecular biology — Posted on 2019-10-25

822 Resolving the dark matter of ABCA4 for 1,054 Stargardt disease probands through integrated genomics and transcriptomics

Khan, M.; Cornelis, S. S.; Pozo-Valero, M. d.; Whelan, L.; Runhart, E. H.; Mishra, K.; Bults, F.; AlSwaiti, Y.; AlTabishi, A.; Baere, E. D.; Banfi, S.; Banin, E.; Bauwens, M.; Ben-Yosef, T.; Boon, C. J. F.; Born, L. I. v. d.; Defoort, S.; Devos, A.; Dockery, A.; Dudakova, L.; Fakin, A.; Farrar, G. J.; Ferraz Sallum, J. M.; Fujinami, K.; Gilissen, C.; Glavac, D.; Gorin, M. B.; Greenberg, J.; Hayashi, T.; Hettinga, Y.; Hoischen, A.; Hoyng, C. B.; Hufendiek, K.; Jagle, H.; Kamakari, S.; Karali, M.; Kellner, U.; Klaver, C. C. W.; Kousal, B.; Lamey, T.; MacDonald, I. M.; Matynia, A.; McLaren, T.; M

10.1101/817767 — genetics — Posted on 2019-10-25

823 Generation of non-integrated iPSCs from achondroplasia patient skin and urine and gene correction in them using CRISPR-Cas9

Qin, Y.

10.1101/801415 — genetics — Posted on 2019-10-25

824 Loss of diversity and accumulation of genetic load in doubled-haploid lines from European maize landrace

Zeitler, L.; Ross-Ibarra, J.; Stetter, M. G.

10.1101/817791 — evolutionary biology — Posted on 2019-10-25

825 Sexually antagonistic coevolution between the sex chromosomes of Drosophila melanogaster

Lund-Hansen, K. K.; Olito, C.; Morrow, E. H.; Abbott, J. K.

10.1101/818146 — evolutionary biology — Posted on 2019-10-25

826 Generation of mechanosensory neurons in adult Drosophila

Fernandez-Hernandez, I.; Marsh, E. B.; Bonaguidi, M. A.

10.1101/812057 — developmental biology — Posted on 2019-10-25

827 Extensive In Silico Analysis of ATL1 Gene: Discovered Five Mutations that may Cause Hereditary Spastic Paraplegia Type 3A

Mustafa, M. I.; Murshed, N. S.; Abdelmoneim, A. H.; Abdelmageed, M. I.; Elfadol, N. M.; Makhawi, A. M.

10.1101/818302 — bioinformatics — Posted on 2019-10-25

828 Map making: Constructing, combining, and navigating abstract cognitive maps

Park, S. A.; Miller, D. S.; Nili, H.; Ranganath, C.; Boorman, E. D.

10.1101/810051 — neuroscience — Posted on 2019-10-25

829 Neural representation of bat predation risk and evasive flight in moths: a modelling approach

Goerlitz, H. R.; ter Hofstede, H. M.; Holderied, M. W.

10.1101/818609 — neuroscience — Posted on 2019-10-25

830 Identification and biochemical characterization of a novel eukaryotic-like Ser/Thr kinase in E. coli

Rajagopalan, K.; Dworkin, J.

10.1101/819920 — microbiology — Posted on 2019-10-25

831 Kinesin KIF18A is a novel PUM regulated target promoting mitotic progression and survival of human male germ cell line - TCam-2

Smialek, M. J.; Kuczynska, B.; Ilaslan, E.; Janecki, D. M.; Sajek, M. P.; Kusz-Zamelczyk, K.; Jaruzelska, J.

10.1101/819839 — developmental biology — Posted on 2019-10-25

832 Behavioral and physiological evidence that increasing group size ameliorates the impacts of social disturbance

Anderson, H. M.; Little, A. G.; Fisher, D. N.; McEwen, B. L.; Culbert, B. M.; Balshine, S.; Pruitt, J. N.

10.1101/818401 — animal behavior and cognition — Posted on 2019-10-25

833 SECAT: Quantifying differential protein-protein interaction states by network-centric analysis

Rosenberger, G.; Heusel, M.; Bludau, I.; Collins, B. C.; Martelli, C.; Williams, E.; Xue, P.; Liu, Y.; Aebersold, R.; Califano, A.

10.1101/819755 — systems biology — Posted on 2019-10-25

834 The Electrophysiological Signature of Mind Wandering

Arnau, S.; Loeffler, C.; Rummel, J.; Hagemann, D.; Wascher, E.; Schubert, A.-L.

10.1101/819805 — neuroscience — Posted on 2019-10-25

835 MitoPlex: A Targeted Multiple Reaction Monitoring Assay for Quantification of a Curated Set of Mitochondrial Proteins

Stotland, A.; Spivia, W.; Orosco, A.; Andres, A. M.; Gottlieb, R. A.; Van Eyk, J.; Parker, S. J.

10.1101/820167 — molecular biology — Posted on 2019-10-25

836 Colibactin DNA damage signature indicates causative role in colorectal cancer

Dziubanska Kusibab, P. J.; Berger, H.; Battistini, F.; Bowman, B. A.; Iftekhar, A.; Katainen, R.; Crosetto, N.; Orozco, M.; Aaltonen, L. A.; Meyer, T. F.

10.1101/819854 — microbiology — Posted on 2019-10-25

837 Metabarcoding a Metacommunity: detecting change in a wetland wilderness

Bush, A.; Monk, W. A.; Compson, Z. G.; Peters, D. L.; Porter, T. M.; Shokralla, S.; Wright, M. T. G.; Hajibabaei, M.; Baird, D. J.

10.1101/819714 — ecology — Posted on 2019-10-25

838 Synthesis and Characterization of Aqueous Haemoglobin-based Microcapsules Coated by Genipin-Cross-Linked Albumin

Schakowski, K. M.; Linders, J.; Ferenz, K. B.; Kirsch, M.

10.1101/818278 — biochemistry — Posted on 2019-10-25

839 Asymmetric molecular architecture of the human γ-tubulin ring complex

Wieczorek, M.; Urnavicius, L.; Ti, S.-C.; Molloy, K. R.; Chait, B. T.; Kapoor, T. M.

10.1101/820142 — biochemistry — Posted on 2019-10-25

840 Haptic assistance that restricts use of redundant solutions is detrimental to motor learning

Lokesh, R.; Ranganathan, R.

10.1101/819771 — neuroscience — Posted on 2019-10-25

841 Repetita iuvant: repetition facilitates online planning of sequential movements

Ariani, G.; Kwon, Y. H.; Diedrichsen, J.

10.1101/819938 — neuroscience — Posted on 2019-10-25

842 Toward a genetic system in the marine cyanobacterium Prochlorococcus

Laurenceau, R.; Bliem, C.; Osburne, M. S.; Becker, J. W.; Biller, S. J.; Cubillos-Ruiz, A.; Chisholm, S. W.

10.1101/820027 — microbiology — Posted on 2019-10-25

843 Simulating the evolutionary trajectories of metabolic pathways for insect symbionts in the Sodalis genus

Hall, R. J.; Thorpe, S.; Thomas, G. H.; Wood, A. J.

10.1101/819946 — evolutionary biology — Posted on 2019-10-25

844 The Impact of Cross-Species Gene Flow on Species Tree Estimation

Jiao, X.; Flouris, T.; Rannala, B.; Yang, Z.

10.1101/820019 — evolutionary biology — Posted on 2019-10-25

845 Ant cuticular hydrocarbons are heritable and associated with variation in colony productivity

Walsh, J. T.; Pontieri, L.; d'Ettorre, P.; Linksvayer, T. A.

10.1101/819870 — evolutionary biology — Posted on 2019-10-25

846 A hierarchical framework for segmenting movement paths

Getz, W. M.

10.1101/819763 — ecology — Posted on 2019-10-25

847 Cortical contraction drives the 3D patterning of epithelial cell surfaces

van Loon, A. P.; Erofeev, I. S.; Maryshev, I. V.; Goryachev, A. B.; Sagasti, A.

10.1101/819987 — cell biology — Posted on 2019-10-25

848 Glucose homeostasis is impaired in mice deficient for the neuropeptide 26RFa (QRFP)

El Mehdi, M.; Takhlidjt, S.; Khiar, F.; Prevost, G.; do Rego, J.-L.; do Rego, J.-C.; Benani, A.; Nedelec, E.; Godefroy, D.; Arabo, A.; Lefranc, B.; Leprince, J.; Anouar, Y.; Chartrel, N.; PICOT, M.

10.1101/816728 — physiology — Posted on 2019-10-25

849 Probabilistic atlas of the lateral parabrachial nucleus, medial parabrachial nucleus, vestibular nuclei complex and medullary viscero-sensory-motor nuclei complex in living humans from 7 Tesla MRI

Singh, K.; Indovina, I.; Augustinack, J. C.; Nestor, K.; Garcia-Gomar, M. G.; Staab, J. P.; Bianciardi, M.

10.1101/814228 — neuroscience — Posted on 2019-10-25

850 MicroCT optimisation for imaging fascicular anatomy in peripheral nerves

Thompson, N.; Ravagli, E.; Mastitskaya, S.; Iacoviello, F.; Aristovich, K.; Perkins, J.; Shearing, P. R.; Holder, D.

10.1101/818237 — neuroscience — Posted on 2019-10-25

851 Diversity and complexity of the large surface protein family in the compacted genomes of various Pneumocystis species

Ma, L.; Chen, Z.; Huang, D. W.; Cisse, O. H.; Rothenburger, J. L.; Latinne, A.; Bishop, L.; Blair, R.; Brenchley, J. M.; Chabe, M.; Deng, X.; Hirsch, V.; Keesler, R.; Kutty, G.; Liu, Y.; Margolis, D.; Morand, S.; Pahar, B.; Peng, L.; Van Rompay, K. K. A.; Song, X.; Song, J.; Sukura, A.; Thapar, S.; Wang, H.; Weissenbacher-Lang, C.; Xu, J.; Lee, C.-H.; Jardine, C.; Lempicki, R. A.; Cushion, M. T.; Cuomo, C.; Kovacs, J. A.

10.1101/814236 — molecular biology — Posted on 2019-10-25

852 Drug resistant gut bacteria mimic a host mechanism for anticancer drug clearance

Spanogiannopoulos, P.; Bradley, P. H.; Melamed, J.; Malig, Y. N. A.; Lam, K. N.; Gerona, R. R.; Pollard, K. S.; Turnbaugh, P.

10.1101/820084 — microbiology — Posted on 2019-10-25

853 The role of historical and contemporary environmental factors in the distribution of genetic diversity in the teosinte in Mexico

Gasca-Pineda, J.; Gutierrez-Guerrero, Y.; Aguirre-Planter, E.; Tiffin, P.; Eguiarte, L. E.

10.1101/820126 — evolutionary biology — Posted on 2019-10-25

854 Targeting the PI5P4K lipid kinase family in cancer using novel covalent inhibitors

Sivakumaren, S. C.; Shim, H.; Zhang, T.; Ferguson, F. M.; Lundquist, M. R.; Browne, C. M.; Seo, H.-S.; Paddock, M. N.; Manz, T. D.; Jiang, B.; Hao, M.-F.; Krishnan, P.; Wang, D. G.; Yang, T. J.; Kwiatkowski, N. P.; Ficarro, S. B.; Cunningham, J. M.; Marto, J. A.; Dhe-Paganon, S.; Cantley, L. C.; Gray, N. S.

10.1101/819961 — cancer biology — Posted on 2019-10-25

855 Single-cell RNA counting at allele- and isoform-resolution using Smart-seq3

Hagemann-Jensen, M.; Ziegenhain, C.; Chen, P.; Ramskold, D.; Hendriks, G.-J.; Larsson, A. J. M.; Faridani, O. R.; Sandberg, R.

10.1101/817924 — genomics — Posted on 2019-10-25

856 AP-1B facilitates endocytosis during cell migration

Kell, M. J.; Ang, S. F.; Pigati, L.; Halpern, A.; Folsch, H.

10.1101/818856 — cell biology — Posted on 2019-10-25

857 A discrete approach to the external branches of a Kingman coalescent tree. Theoretical results and practical applications

Disanto, F.; Wiehe, T.

10.1101/818088 — evolutionary biology — Posted on 2019-10-25

858 Comprehensive molecular characterization of pediatric treatment-induced high-grade glioma: A distinct entity despite disparate etiologies with defining molecular characteristics and potential therapeutic targets

10.1101/809772 — cancer biology — Posted on 2019-10-25

859 Examining temporal structures in reaction time

Perquin, M. N.; Bompas, A.

10.1101/817916 — neuroscience — Posted on 2019-10-25

860 Hyperactive/impulsive and inattention symptoms are associated with reduced ERP activity during different reward processing stages: Evidence from the electrophysiological Monetary Incentive Delay Task in adult ADHD

Bennett, M.; Kiiski, H.; Cao, Z.; Farina, F. R.; Knight, R.; Sweeney, A.; Roddy, D.; Kelly, C.; Whelan, R. R.

10.1101/817973 — neuroscience — Posted on 2019-10-25

861 Interaction of contexts in context-dependent orientation estimation

Dekel, R.; Sagi, D.

10.1101/816355 — neuroscience — Posted on 2019-10-25

862 A comprehensive human minimal gut metagenome extends the host’s metabolic potential

Parras-Molto, M.; Aguirre de Carcer, D.

10.1101/818138 — microbiology — Posted on 2019-10-25

863 Genome-wide identification of accessible chromatin regions in bumblebee (Bombus terrestris) by ATAC-seq

Zhao, X.; Xu, W.; Schaack, S.; Sun, C.

10.1101/818211 — genomics — Posted on 2019-10-25

864 Prolonged oral coenzyme Q10-β-cyclodextrin supplementation increases plasma CoQ10 concentration and skeletal muscle complex I+III activity in young, untrained healthy Thoroughbreds

Rooney, M. F.; Curley, C. E.; Sweeney, J.; Griffin, M. E.; Porter, R. K.; Hill, E. W.; Katz, L. M.

10.1101/818120 — biochemistry — Posted on 2019-10-25

865 Genetic diversity and taxonomic issues in Gastridium P.Beauv (Poaceae) inferred from plastid and nuclear DNA sequence analysis

Scoppola, A.; Cardoni, S.; Pellegrino, M.; Lopez-Tirado, J.; Simeone, M. C.

10.1101/817965 — genetics — Posted on 2019-10-25

866 Comment on ‘Response to comment on ‘Valid molecular dynamics simulations of human hemoglobin require a surprisingly large box size’’

Gapsys, V.; de Groot, B. L.

10.1101/812966 — biophysics — Posted on 2019-10-25

867 Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis

Fu, Y.; Jung, A. W.; Torne, R. V.; Gonzalez, S.; Vohringer, H.; Jimenez-Linan, M.; Moore, L.; Gerstung, M.

10.1101/813543 — bioinformatics — Posted on 2019-10-25

868 Missing-In-Metastasis / Metastasis Suppressor 1 modulates B cell receptor signaling, B cell metabolic potential and T cell-independent immune responses.

Sarapulov, A. V.; Petrov, P.; Hernandez-Perez, S.; Sustar, V.; Kuokkanen, E.; Vainio, M.; Cords, L.; Fritzsche, M.; Carrasco, Y.; Mattila, P.

10.1101/782276 — immunology — Posted on 2019-10-25

869 Scalable and cost-effective ribonuclease-based rRNA depletion for transcriptomics

Huang, Y.; Sheth, R.; Kaufman, A.; Wang, H.

10.1101/645895 — genomics — Posted on 2019-10-25

870 Multiomics Analysis of the mdx/mTR Mouse Model of Duchenne Muscular Dystrophy

Van Pelt, D. W.; Kharaz, Y. A.; Sarver, D. C.; Eckhardt, L. R.; Dzierzawski, J. T.; Disser, N. P.; Piacentini, A. N.; Comerford, E.; McDonagh, B.; Mendias, C. L.

10.1101/589424 — physiology — Posted on 2019-10-25

871 Regional heterogeneity of early GABAergic interneuron excitation in vivo

Murata, Y.; Colonnese, M.

10.1101/701862 — neuroscience — Posted on 2019-10-25

872 Finding genetic variants in plants without complete genomes

Voichek, Y.; Weigel, D.

10.1101/818096 — plant biology — Posted on 2019-10-25

873 The identification of temporal communities through trajectory clustering correlates with single-trial behavioural fluctuations in neuroimaging data

Thompson, W. H.; Wright, J.; Shine, J. M.; Poldrack, R. A.

10.1101/617027 — neuroscience — Posted on 2019-10-25

874 Suppression of store-operated calcium entry causes dilated cardiomyopathy of the Drosophila heart

Smyth, J. T.; Wolf, M. J.; Petersen, C. E.

10.1101/659136 — physiology — Posted on 2019-10-25

875 Intragenic Recombination Influences Rotavirus Diversity and Evolution

Hoxie, I.; Dennehy, J. J.

10.1101/794826 — evolutionary biology — Posted on 2019-10-25

876 Integrative QTL analysis of gene expression and chromatin accessibility identifies multi-tissue patterns of genetic regulation

KEELE, G. R.; Quach, B. C.; Israel, J. W.; Chappell, G. A.; Lewis, L.; Safi, A.; Simon, J. M.; Cotney, P.; Crawford, G. E.; Valdar, W.; Rusyn, I.; Furey, T. S.

10.1101/588723 — genomics — Posted on 2019-10-25

877 Evolution of multiple CDK1 paralogs towards specializations in late cell cycle events in a lineage with fast developing planktonic embryos.

Ma, X.; Ovrebo, J. I.; Thompson, E. M.

10.1101/817783 — evolutionary biology — Posted on 2019-10-25

878 Nonlinear relationship between multimodal adrenergic responses and local dendritic activity in primary sensory cortices

Deitcher, Y.; Leibner, Y.; Kutzkel, S.; Zylbermann, N.; London, M.

10.1101/814657 — neuroscience — Posted on 2019-10-25

879 Stress-mediated convergence of splicing landscapes in male and female Rock Doves

Lang, A. S.; MacManes, M. D.; Calisi, R. M.; Harris, R. M.; Austin, S. H.

10.1101/798413 — genomics — Posted on 2019-10-25

880 Network-based metrics of community resilience and dynamics in lake ecosystems

Armstrong McKay, D. I.; Dyke, J. G.; Dearing, J. A.; Doncaster, C. P.; Wang, R.

10.1101/810762 — ecology — Posted on 2019-10-25

881 Varietal differences in physiological and biochemical responses to salinity stress in six finger millet plants

Mukami, A.; Ngetich, A.; Syombua, E.; Oduor, R. O.; Mbinda, W. M.

10.1101/789883 — plant biology — Posted on 2019-10-25

882 The temporal structure of the inner retina at a single glance

Zhao, Z.; Klindt, D.; Maia Chagas, A.; Szatko, K. P.; Rogerson, L. E.; Protti, D. A.; Behrens, C.; Dalkara, D.; Schubert, T.; Bethge, M.; Franke, K.; Berens, P.; Ecker, A. S.; Euler, T.

10.1101/743047 — neuroscience — Posted on 2019-10-25

883 Sensory information from a slipping object elicits a rapid and automatic shoulder response

Hernandez-Castillo, C. R.; Maeda, R. S.; Pruszynski, J. A.; Diedrichsen, J.

10.1101/724054 — neuroscience — Posted on 2019-10-25

884 Natural image reconstruction from brain waves: a novel visual BCI system with native feedback

Rashkov, G. V.; Bobe, A. S.; Fastovets, D. V.; Komarova, M. V.

10.1101/787101 — neuroscience — Posted on 2019-10-25

885 Promiscuous receptor activation mediates glucagonostatic effects of GLP-1(9-36) and GLP-1(7-36)

Guida, C.; Miranda, C.; Wernstedt Asterholm, I.; Basco, D.; Benrick, A.; Chanclon, B.; Chibalina, M.; Harris, M.; Kellard, J.; McCulloch, L.; Real, J.; Rorsman, N.; Yeung, H. Y.; Reimann, F.; Shigeto, M.; Clark, A.; Thorens, B.; Rorsman, P.; Ladds, G.; Ramracheya, R.

10.1101/785667 — molecular biology — Posted on 2019-10-25

886 Polypyrimidine Tract Binding Proteins are essential for B cell development

Monzon-Casanova, E.; Matheson, L. S.; Tabbada, K.; Zarnack, K.; Smith, C. W. J.; Turner, M.

10.1101/769141 — immunology — Posted on 2019-10-25

887 Accuracy of de novo assembly of DNA sequences from double-digest libraries varies substantially among software

LaCava, M.; Aikens, E.; Megna, L.; Randolph, G.; Hubbard, C.; Buerkle, A.

10.1101/706531 — genomics — Posted on 2019-10-25

888 Massively Parallel Microwire Arrays Integrated with CMOS chips for Neural Recording

Obaid, A. M.; Hanna, M.-E. S.; Wu, Y.-W.; Kollo, M.; Racz, R. R.; Angle, M. R.; Muller, J.; Brackbill, N.; Wray, W.; Franke, F.; Chichilnisky, E. J.; Hierlemann, A.; Ding, J. B.; Schaefer, A. T.; Melosh, N. A.

10.1101/573295 — neuroscience — Posted on 2019-10-25

889 Looking forward does not mean forgetting about the past: ERP evidence for the interplay of predictive coding and interference during language processing

Schoknecht, P.; Roehm, D.; Schlesewsky, M.; Bornkessel-Schlesewsky, I.

10.1101/567560 — neuroscience — Posted on 2019-10-25

890 Chemotactic behavior of Escherichia coli at high cell density

Colin, R.; Drescher, K.; Sourjik, V.

10.1101/402289 — biophysics — Posted on 2019-10-25

891 The Block Object Storage Service (bossDB): A Cloud-Native Approach for Petascale Neuroscience Discovery

Hider, R.; Kleissas, D.; Pryor, D.; Gion, T.; Rodriguez, L.; Matelsky, J.; Gray-Roncal, W.; Wester, B.

10.1101/217745 — bioinformatics — Posted on 2019-10-25

892 Activated αIIbβ3 on platelets mediates flow-dependent NETosis via SLC44A2

Constantinescu-Bercu, A.; Grassi, L.; Frontini, M.; Salles-Crawley, I. I.; Woollard, K. J.; Crawley, J. T.

10.1101/373670 — cell biology — Posted on 2019-10-25

893 p53 induces senescence in the unstable progeny of aneuploid cells

Rancati, G.; Giam, M.; Wong, C. K.; Low, J. S.; Sinelli, M.; Dreesen, O.

10.1101/818112 — cancer biology — Posted on 2019-10-25

894 Loss of critical developmental and human disease-causing genes in 58 mammals

Turakhia, Y.; Chen, H.; Marcovitz, A.; Bejerano, G.

10.1101/819169 — genomics — Posted on 2019-10-25

895 Finding genetic variants in plants without complete genomes

Voichek, Y.; Weigel, D.

10.1101/818096 — plant biology — Posted on 2019-10-25

896 Cell-Surface Proteomic Profiling in the Fly Brain Uncovers New Wiring Regulators

Li, J.; Han, S.; Li, H.; Udeshi, N. D.; Svinkina, T.; Mani, D. R.; Xu, C.; Guajardo, R.; Xie, Q.; Li, T.; Luginbuhl, D. J.; Wu, B.; McLaughlin, C. N.; Xie, A.; Kaewsapsak, P.; Quake, S. R.; Carr, S. A.; Ting, A. Y.; Luo, L.

10.1101/819037 — neuroscience — Posted on 2019-10-25

897 A divergent CheW confers plasticity to nucleoid-associated chemosensory arrays

Guiseppi, A.; Vicente, J.-J.; Herrou, J.; Barneoud, A.; Moine, A.; Espinosa, L.; Basse, M.-J.; Molle, V.; Mignot, T.; Roche, P.; Mauriello, E.

10.1101/239202 — microbiology — Posted on 2019-10-25

898 The perinuclear ER scales nuclear size independently of cell size in early embryos

Mukherjee, R. N.; Salle, J.; Dmitrieff, S.; Nelson, K.; Oakey, J.; Minc, N.; Levy, D. L.

10.1101/818724 — cell biology — Posted on 2019-10-25

899 Circumvention of common labeling artifacts using secondary nanobodies

Sograte-Idrissi, S.; Schlichthaerle, T.; Duque-Alfonso, C. J.; Alevra, M.; Strauss, S.; Moser, T.; Jungmann, R.; Rizzoli, S. O.; Opazo, F.

10.1101/818351 — cell biology — Posted on 2019-10-25

900 Intermittent Starvation Extends the Functional Lifetime of Primary Human Hepatocyte Cultures

Davidson, M.; Khetani, S.

10.1101/818203 — cell biology — Posted on 2019-10-25

901 Streptococcus equi subsp. zooepidemicus associated with sudden death of swine in North America

Costa, M. O.; Lage, B. L.

10.1101/812636 — microbiology — Posted on 2019-10-25

902 Synergistic effect: a common theme in mixed-species litter decomposition

Liu, J.; Liu, X.; Song, Q.; Luan, F.; Wang, H.; Hu, Y.; Yang, Q.

10.1101/807537 — ecology — Posted on 2019-10-25

903 Movement of moths through riparian reserves within oil palm plantations

Gray, R. E. J.; Slade, E. M.; Chung, A. Y. C.; Lewis, O. T.

10.1101/204990 — ecology — Posted on 2019-10-25

904 Distinct DNA metabolism and anti-proliferative effects of goat urine metabolites: An explanation for xeno-tumor heterogeneity

Kumar, A.; Swami, S.; Sharma, N. K.

10.1101/815548 — cancer biology — Posted on 2019-10-25

905 Influencing factors of telephone-cardiopulmonary resuscitation in China: a qualitative exploration based on managerial perspectives

Zhu, X.; Gui, L.; Xie, X.; Lin, Y.

10.1101/775874 — systems biology — Posted on 2019-10-25

906 The potential for gas-free measurements of absolute oxygen metabolism during both baseline and activation states in the human brain

Liu, E. Y.; Guo, J.; Simon, A. B.; Haist, F.; Dubowitz, D. J.; Buxton, R. B.

10.1101/705186 — neuroscience — Posted on 2019-10-25

907 Accounting for diverse evolutionary forces reveals the mosaic nature of selection on genomic regions associated with human preterm birth

LaBella, A. L.; Abraham, A.; Pichkar, Y.; Fong, S. L.; Zhang, G.; Muglia, L. J.; Abbot, P.; Rokas, A.; Capra, J. A.

10.1101/816827 — evolutionary biology — Posted on 2019-10-25

908 Automated methods enable direct computation on phenotypic descriptions for novel candidate gene prediction

Braun, I. R.; Lawrence-Dill, C. J.

10.1101/689976 — bioinformatics — Posted on 2019-10-25

909 Efficacy of JAK1/2 and BCL2 inhibition on human T cell acute lymphoblastic leukemia in vitro and in vivo

Walker, K. L.; Kabakov, S. A.; Zhu, F.; Bouchlaka, M. N.; Olson, S. L.; Cho, M. M.; Quamine, A. E.; Feils, A. S.; Gavcovich, T. B.; Rui, L.; Capitini, C. M.

10.1101/734913 — cancer biology — Posted on 2019-10-25

910 Cancer avatars derived from genetically engineered pluripotent stem cells allow for longitudinal assessment of tumor development

Koga, T.; Benitez, J. A.; Chaim, I. A.; Markmiller, S.; Parisian, A. D.; Hevner, R. F.; Turner, K. M.; Hessenauer, F. M.; D'Antonio, M.; Nguyen, N.-p. D.; Saberi, S.; Ma, J.; Miki, S.; Boyer, A. D.; Ravits, J.; Frazer, K. A.; Bafna, V.; Chen, C. C.; Mischel, P. S.; Yeo, G. W.; Furnari, F. B.

10.1101/576009 — cancer biology — Posted on 2019-10-25

911 Fast and precise single-cell data analysis using hierarchical autoencoder

Tran, D.; Nguyen, H.; Tran, B.; La Vecchia, C.; Luu, H. N.; Nguyen, T.

10.1101/799817 — bioinformatics — Posted on 2019-10-25

912 Chromosome disentanglement driven via optimal compaction of loop-extruded brush structures

Brahmachari, S.; Marko, J. F.

10.1101/616102 — biophysics — Posted on 2019-10-25

913 Antagonistic activity of Bacillus amyloliquefaciens subsp. amyloliquefaciens against multidrug resistant Serratia rubidaea

Bhuiyan, M. N. I.; Afrin, S.

10.1101/818054 — microbiology — Posted on 2019-10-24

914 Sensitivity and uncertainty analysis of two human atrial cardiac cell models using Gaussian process emulators

Coveney, S.; Clayton, R. H.

10.1101/818047 — cell biology — Posted on 2019-10-24

915 Effect of feedback regulation on stem cell fractions in tissues and tumors: understanding chemoresistance in bladder cancer

Weiss, L.; van den Driesche, P.; Lowengrub, J.; Wodarz, D.; Komarova, N. L.

10.1101/818005 — systems biology — Posted on 2019-10-24

916 Modeling the shape of synaptic spines by their actin dynamics

Bonilla-Quintana, M.; Wörgötter, F.; Tetzlaff, C.; Fauth, M.

10.1101/817932 — neuroscience — Posted on 2019-10-24

917 CNLLRR: A Novel Low-Rank Representation Method for Single-cell RNA-seq Data Analysis

Yu, N.; Liu, J.-X.; Gao, Y.-L.; Zheng, C.-H.; Shang, J.; Cai, H.

10.1101/818062 — bioinformatics — Posted on 2019-10-24

918 INTERACTION OF QUERCETIN AND EPIGALLOCATECHIN GALLATE (EGCG) AGGREGATES WITH PANCREATIC LIPASE UNDER SIMPLIFIED INTESTINAL CONDITIONS

Bustos, A.-S.; Hakansson, A.; Linares-Pasten, J. A.; Penarrieta, J. M.; Nilsson, L.

10.1101/818021 — biochemistry — Posted on 2019-10-24

919 Molecular epidemiology of Japanese Encephalitis Virus in pig population of Odisha, Assam and Manipur states of India

Datey, A.; Singh, L. M.; Rajkhowa, U.; Prusty, B. K.; Saswat, T.; Mamidi, P.; Barkalita, L. M.; Dutta, R.; Sharma, K. C.; Sahoo, D.; Borah, P.; Devi, S. I.; Chattopadhyay, S.

10.1101/818070 — microbiology — Posted on 2019-10-24

920 m6A minimally impacts the structure, dynamics, and Rev ARM binding properties of HIV-1 RRE stem IIB

Chu, C.-c.; Liu, B.; Plangger, R.; Kreutz, C.; Al-Hashimi, H.

10.1101/817940 — biochemistry — Posted on 2019-10-24

921 Distinct patterns of surround modulation in V1 and hMT+

Pamir, Z.; Er, G.; Boyaci, H.

10.1101/817171 — neuroscience — Posted on 2019-10-24

922 Eco-evolutionary dynamics of Plasmodium genotypes under mass drug administration

Bargues-Ribera, M.; Reeves, R. G.; Gokhale, C. S.

10.1101/818039 — evolutionary biology — Posted on 2019-10-24

923 Retrieved-context theory of memory in emotional disorders

Cohen, R. T.; Kahana, M. J.

10.1101/817486 — neuroscience — Posted on 2019-10-24

924 Quantification of DNA methylation using methylation-sensitive restriction enzymes and multiplex digital PCR

Nell, R. J.; van Steenderen, D.; Menger, N. V.; Weitering, T. J.; Versluis, M.; van der Velden, P. A.

10.1101/816744 — genomics — Posted on 2019-10-24

925 What if I had a third arm? An EEG study of a supernumerary BCI system

Riascos Salas, J. A.; Villa, S.; Maciel, A.; Nedel, L.; Barone, D.

10.1101/817205 — neuroscience — Posted on 2019-10-24

926 Dopamine buffering capacity imaging: A pharmacodynamic fMRI method for staging Parkinson disease

Black, K. J.; Acevedo, H. K.; Koller, J. M.

10.1101/817106 — neuroscience — Posted on 2019-10-24

927 Dynamic shifts of visual and saccadic signals in prefrontal cortical regions 8Ar and FEF

Khanna, S. B.; Scott, J. A.; Smith, M. A.

10.1101/817478 — neuroscience — Posted on 2019-10-24

928 Closing and opening of the RNA polymerase trigger loop

Mazumder, A.; Lin, M.; Kapanidis, A.; Ebright, R. H.

10.1101/817080 — molecular biology — Posted on 2019-10-24

929 Identification and characterization of zebrafish Tlr4 co-receptor Md-2

Loes, A. N.; Hinman, M. N.; Farnsworth, D. R.; Miller, A. C.; Guillemin, K.; Harms, M. J.

10.1101/817528 — immunology — Posted on 2019-10-24

930 Mutant evolution in spatially structured and fragmented populations

Wodarz, D.; Komarova, N.

10.1101/817387 — evolutionary biology — Posted on 2019-10-24

931 Image-based Cell Phenotyping Using Deep Learning

Berryman, S. G.; Matthews, K.; Lee, J. H.; Duffy, S. P.; Ma, H.

10.1101/817544 — bioinformatics — Posted on 2019-10-24

932 A missense variant impairing TRMT1 function in tRNA modification is linked to intellectual disability

Zhang, K.; Lentini, J. M.; Prevost, C. T.; Hashem, M. O.; Alkuraya, F.; Fu, D.

10.1101/817247 — molecular biology — Posted on 2019-10-24

933 DeepSeqPanII: an interpretable recurrent neural network model with attention mechanism for peptide-HLA class II binding prediction

Liu, Z.; Jin, J.; Cui, Y.; Xiong, Z.; Nasiri, A.; Zhao, Y.; Hu, J.

10.1101/817502 — bioinformatics — Posted on 2019-10-24

934 Sensory substitution reveals a manipulation bias

Zai, A. T.; Cave-Lopez, S.; Rolland, M.; Giret, N.; Hahnloser, R. H. R.

10.1101/816835 — neuroscience — Posted on 2019-10-24

935 High quality genome sequence reveals the 12 pseudo-chromosomes of Ganoderma boninense

Utomo, C.; Tanjung, Z. A.; Aditama, R.; Buana, R. F. N.; Pratomo, A. D. M.; Tryono, R.; Liwang, T.

10.1101/817510 — genomics — Posted on 2019-10-24

936 Combining metabarcoding and morphological approaches to identify phytoplankton taxa associated with harmful algal blooms

Esenkulova, S.; Tabata, A.; Sutherland, B. J. G.; Haigh, N.; Pearce, C. M.; Miller, K. M.

10.1101/816926 — genetics — Posted on 2019-10-24

937 Decoupling Genetics from Attainments: The Role of Social Environments

Fletcher, J.

10.1101/817163 — genetics — Posted on 2019-10-24

938 A primary sexual trait involved in courtship in insects: Male genital lobe morphology affects the chance to copulate in Drosophila pachea

Lefevre, B. M.; Catte, D.; Courtier-Orgogozo, V.; Lang, M.

10.1101/816538 — evolutionary biology — Posted on 2019-10-24

939 Climatic niche predicts the landscape structure of locally adaptive standing genetic variation

Chhatre, V. E.; Fetter, K. C.; Gougherty, A. V.; Fitzpatrick, M. C.; Soolanayakanahally, R. Y.; Zalensy, R. S.; Keller, S. R.

10.1101/817411 — evolutionary biology — Posted on 2019-10-24

940 An insulin-stimulated proteolytic mechanism links energy expenditure with glucose uptake

Habtemichael, E. N.; Li, D. T.; Camporez, J. P.; Westergaard, X. O.; Sales, C. I.; Liu, X.; Lopez-Giraldez, F.; DeVries, S. G.; Li, H.; Ruiz, D. M.; Wang, K. Y.; Sayal, B. S.; Hirabara, S.; Vatner, D. F.; Philbrick, W.; Shulman, G. I.; Bogan, J. S.

10.1101/817049 — physiology — Posted on 2019-10-24

941 Kia kaua te reo e rite ki te moa, ka ngaro: Do not let the language suffer the same fate as the moa

Barrett-Walker, T.; Plank, M. J.; Ka'ai-Mahuta, R.; Hikuroa, D.; James, A.

10.1101/817148 — ecology — Posted on 2019-10-24

942 Frequency of MicroRNA Response Elements Identifies Pathologically Relevant Signaling Pathways in Cancers

Nair, A.; Tang, X.; Thompson, K.; Kalari, K. R.; Subramanian, S.

10.1101/817098 — bioinformatics — Posted on 2019-10-24

943 Tunable Fibrin-Alginate Interpenetrating Network Hydrogels to Guide Cell Behavior

Vorwald, C. E.; Gonzalez-Fernandez, T.; Joshee, S.; Sikorski, P.; Leach, K.

10.1101/817114 — bioengineering — Posted on 2019-10-24

944 The BIR2/BIR3-interacting Phospholipase D gamma 1 negatively regulates immunity in Arabidopsis

Gust, A. A.; Schlöffel, M.; Wan, W.-L.; Salzer, A.; van Wijk, R.; Semanjski, M.; Symeonidi, E.; Slaby, P.; Kilian, J.; Macek, B.; Munnik, T.

10.1101/815282 — plant biology — Posted on 2019-10-24

945 Learning to learn persistently modifies a neocortical-hippocampal excitatory-inhibitory subcircuit

Chung, A.; Garcia-Jou, C.; Dvorak, D.; Hussain, N.; Fenton, A.

10.1101/817627 — neuroscience — Posted on 2019-10-24

946 Evolution of multiple CDK1 paralogs towards specializations in late cell cycle events in a lineage with fast developing planktonic embryos.

Ma, X.; Thompson, E. M.; Ovrebo, J. I.

10.1101/817783 — evolutionary biology — Posted on 2019-10-24

947 Accounting for diverse evolutionary forces reveals the mosaic nature of selection on genomic regions associated with human preterm birth

LaBella, A. L.; Abraham, A.; Pichkar, Y.; Fong, S. L.; Zhang, G.; Muglia, L. J.; Abbot, P.; Capra, J. A.; Rokas, A.

10.1101/816827 — evolutionary biology — Posted on 2019-10-24

948 Quantile normalization of single-cell RNA-seq read counts without unique molecular identifiers

Townes, F. W.; Irizarry, R. A.

10.1101/817031 — genomics — Posted on 2019-10-24

949 Genomic Outcomes of Haploid Induction Crosses in Potato (Solanum tuberosum L.)

Amundson, K.; Ordonez, B.; Santayana, M.; Tan, E. H.; Henry, I. M.; Mihovilovich, E.; Bonierbale, M. W.; Comai, L.

10.1101/816942 — genomics — Posted on 2019-10-24

950 The role of working memory for bridging the gap between perception and goal-directed actions - Evidence by mu and beta oscillations in sensorimotor cortex

Schneider, D.; Roesner, M.; Klatt, L.-I.; Wascher, E.

10.1101/817742 — neuroscience — Posted on 2019-10-24

951 Allergen-induced tRNA halves repress focal adhesion of airway smooth muscle cells

Shigematsu, M.; Pawar, K.; Kawamura, T.; Shah, S. D.; Deshpande, D. A.; Kirino, Y.

10.1101/815803 — molecular biology — Posted on 2019-10-24

952 Multi-proxy analyses of a mid-15th century Middle Iron Age Bantu-speaker palaeo-faecal specimen elucidates the configuration of the ancestral sub-Saharan African intestinal microbiome

Rifkin, R. F.; Vikram, S.; Ramond, J.-B. J.; Rey-Iglesia, A.; Brand, T. B.; Porraz, G.; Val, A.; Hall, G.; Woodborne, S.; Le Bailly, M.; Potgieter, M.; Underdown, S. J.; Koopman, J. E.; Cowan, D. A.; Van de Peer, Y.; Willerslev, E.; Hansen, A. J.

10.1101/817692 — microbiology — Posted on 2019-10-24

953 Mucoidy, a general mechanism for maintaining lytic phage in populations of bacteria

Levin, B. R. R.; Chaudhry, W. N.; Lee, E.; Worthy, A.; Weiss, Z.; Grabowicz, M.; Vega, N.

10.1101/775056 — microbiology — Posted on 2019-10-24

954 Demographic tradeoffs predict tropical forest dynamics

Rüger, N.; Condit, R.; Dent, D. H.; DeWalt, S. J.; Hubbell, S. P.; Lichstein, J. W.; Lopez, O. R.; Wirth, C.; Farrior, C. E.

10.1101/808865 — ecology — Posted on 2019-10-24

955 Regulation of FXR1 by alternative splicing is required for muscle development and controls liquid-like condensates in muscle cells

Smith, J. A.; Curry, E. G.; Blue, R. E.; Roden, C.; Dundon, S. E. R.; Rodriguez-Vargas, A.; Jordan, D. C.; Chen, X.; Lyons, S. M.; Crutchley, J.; Anderson, P.; Horb, M. E.; Gladfelter, A. S.; Giudice, J.

10.1101/818476 — cell biology — Posted on 2019-10-24

956 Flexible Modulation of Neural Variance Facilitates Neuroprosthetic Skill Learning

You, A. K.; Liu, B.; Singhal, A.; Gowda, S.; Moorman, H.; Orsborn, A.; Ganguly, K.; Carmena, J. M.

10.1101/817346 — neuroscience — Posted on 2019-10-24

957 Meningeal lymphatic dysfunction exacerbates traumatic brain injury pathogenesis

Bolte, A. C.; Hurt, M. E.; Smirnov, I.; Kovacs, M. A.; McKee, C. A.; Natale, N.; Ennerfelt, H. E.; Frost, E. L.; Lammert, C. E.; Kipnis, J.; Lukens, J. R.

10.1101/817023 — neuroscience — Posted on 2019-10-24

958 A periplasmic L,D-carboxypeptidase is important for cell morphology, membrane integrity, and virulence in Francisella tularensis

Zellner, B.; MENGIN-LECREULX, D.; Gunning, W.; Booth, R.; Huntley, J. F.

10.1101/817593 — microbiology — Posted on 2019-10-24

959 Manganese uptake, mediated by SloABC and MntH, is essential for the fitness of Streptococcus mutans

Lemos, J. A.; Kajfasz, J. K.; Ganguly, T.; Spatafora, G. A.; Abranches, J.; Katrak, C.; Vargas, J. A.; Wright, L. T.; Peters, Z. T.

10.1101/817585 — microbiology — Posted on 2019-10-24

960 Epigenetic age provides insight into tissue origin in endometriosis

Leap, K.; Yotova, I.; Horvath, S.; Martinez-Agosto, J. A.

10.1101/815936 — genetics — Posted on 2019-10-24

961 Trait evolution under multiple selection pressures: Prey responses to predictable and unpredictable variation

Sharma, M.; Isvaran, K.

10.1101/816314 — ecology — Posted on 2019-10-24

962 TaxIt: An iterative and automated computational pipeline for untargeted strain-level identification using MS/MS spectra from pathogenic samples

Kuhring, M.; Doellinger, J.; Nitsche, A.; Muth, T.; Renard, B. Y.

10.1101/812313 — bioinformatics — Posted on 2019-10-24

963 Task-evoked activity quenches neural correlations and variability across cortical areas

Ito, T.; Brincat, S. L.; Siegel, M.; Mill, R. D.; He, B. J.; Miller, E. K.; Rotstein, H. G.; Cole, M. W.

10.1101/560730 — neuroscience — Posted on 2019-10-24

964 TRPV2 activation reorganizes actin cytoskeleton, induces neurite initiation and branching by altering cAMP levels

YADAV, M.; Goswami, C.

10.1101/817684 — neuroscience — Posted on 2019-10-24

965 The novel shapeshifting bacterial phylum Saltatorellota

Wiegand, S.; Jogler, M.; Kohn, T.; Awal, R. P.; Oberbeckmann, S.; Kesy, K.; Jeske, O.; Schumann, P.; Peeters, S. H.; Kallscheuer, N.; Strauss, M.; Heuer, A.; Jetten, M. S. M.; Labrenz, M.; Rohde, M.; Boedeker, C.; Engelhardt, H.; Schuler, D.; Jogler, C.

10.1101/817700 — microbiology — Posted on 2019-10-24

966 Reversed Signaling Flow of a Bacterial Pseudokinase

Kowallis, K. A.; Silfani, E. M.; Kasumu, A. P.; Rong, G.; So, V.; Childers, W. S.

10.1101/812529 — microbiology — Posted on 2019-10-24

967 Immunoglobulin profile and B-cell frequencies are altered with changes in the cellular micro-environment independent of the stimulation conditions

Moore, D. K.; Leisching, G. R.; Snyders, C. I.; Gutschmidt, A.; van Rensburg, I. C.; Loxton, A. G.; SU-IRG Consortium,

10.1101/818153 — immunology — Posted on 2019-10-24

968 A consensus phylogenomic approach highlights the ancient rapid radiation of Ericales

Larson, D. A.; Walker, J. F.; Vargas, O. M.; Smith, S. A.

10.1101/816967 — evolutionary biology — Posted on 2019-10-24

969 Loss of flavin adenine dinucleotide (FAD) impairs sperm function and male reproductive advantage in C. elegans.

Yen, C.-A.; Ruter, D. L.; Turner, C.; Pang, S.; Curran, S. P.

10.1101/456863 — cell biology — Posted on 2019-10-24

970 Constitutive Expression of the Progesterone Receptor Isoforms Promotes Hormone-Dependent Development of Ovarian Neoplasms

Wetendorf, M.; Li, R.; Wu, S.-P.; Liu, J.; Creighton, C. J.; Wang, T.; Janardhan, K. S.; Wilson, C. J.; Lanz, R. B.; Murphy, B. D.; Lydon, J. P.; DeMayo, F. J.

10.1101/816934 — cancer biology — Posted on 2019-10-24

971 Targeting AKT elicits tumor suppressive functions of FOXO transcription factors and GSK3 kinase in Multiple Myeloma

Bloedjes, T. A.; de Wilde, G.; Maas, C.; Eldering, E. E.; Bende, R. J.; van Noesel, C. J.; Pals, S. T.; Spaargaren, M.; Guikema, J. E.

10.1101/816694 — cancer biology — Posted on 2019-10-24

972 Active sensing in groups: (what) do bats hear in the sonar cocktail party nightmare?

Beleyur, T.; Goerlitz, H. R.

10.1101/817734 — animal behavior and cognition — Posted on 2019-10-24

973 The effect of individual learning on collective foraging in honey bees in complex environments

Lemanski, N. J.; Cook, C. N.; Ozturk, C.; Smith, B. H.; Pinter-Wollman, N.

10.1101/817270 — animal behavior and cognition — Posted on 2019-10-24

974 Interactions of encoding and decoding problems to understand motor control

wen, s.; Yin, A.; Zheng, L.; itti, L.

10.1101/811356 — neuroscience — Posted on 2019-10-24

975 Monitoring Plasmodium falciparum and Plasmodium vivax using microsatellite markers indicates limited changes in population structure after substantial transmission decline in Papua New Guinea

Kattenberg, J. H.; Razook, Z.; Keo, R.; Jennison, C.; Lautu, D.; Fola, A. A.; Ome-Kaius, M.; Barnadas, C.; Siba, P. M.; Felger, I.; Kazura, J.; Mueller, I.; Robinson, L. J.; Barry, A. E.

10.1101/817320 — microbiology — Posted on 2019-10-24

976 Meta-analysis of the General Coral Stress Response: Acropora corals show opposing responses depending on stress intensity

Dixon, G.; Abbott, E.; Matz, M. V.

10.1101/817304 — genomics — Posted on 2019-10-24

977 Phylogenomic data reveal how a climatic inversion and glacial refugia shape patterns of diversity in an African rain forest tree species

Helmstetter, A. J.; Amoussou, B. E. N.; Bethune, K.; Kandem, N. G.; Glele Kakai, R. L.; Sonke, B.; Couvreur, T. L. P.

10.1101/807727 — evolutionary biology — Posted on 2019-10-24

978 Populations of genetic circuits are unable to find the fittest solution in a multilevel genotype-phenotype map

Catalán, P.; Manrubia, S.; Cuesta, J. A.

10.1101/817908 — evolutionary biology — Posted on 2019-10-24

979 Improve Protein Solubility and Activity based on Machine Learning Models

Han, X.; Ning, W.; Ma, X.; Wang, X.; Zhou, K.

10.1101/817890 — bioinformatics — Posted on 2019-10-24

980 Reconstructing lost BOLD signal in individual participants using deep machine learning

Yan, Y.; Dahmani, L.; Shen, L.; Peng, X.; Wang, D.; Ren, J.; He, C.; Jiang, C.; Gong, C.; Tian, Y.; Zhang, J.; Guo, Y.; Lin, Y.; Wang, M.; Li, L.; Hong, B.; Liu, H.

10.1101/808089 — neuroscience — Posted on 2019-10-24

981 Integrating somatosensory information over time

Hernandez-Perez, R.; Rojas-Hortelano, E.; de Lafuente, V.

10.1101/817262 — neuroscience — Posted on 2019-10-24

982 Polyadenylation of Histone H3.1 mRNA Promotes Cell Transformation by Displacing H3.3 from Gene Regulatory Elements

Chen, D.; Chen, Q. Y.; Wang, Z.; Zhu, Y.; Kluz, T.; Tan, W.; Li, J.; Wu, F.; Fang, L.; Zhang, X.; He, R.; Shen, S.; Sun, H.; Zang, C.; Jin, C.; Costa, M.

10.1101/806828 — molecular biology — Posted on 2019-10-24

983 HERV-K and HERV-W transcriptional activity in Myalgic Encephalomyelitis/ Chronic Fatigue Syndrome

Rodrigues, L. S.; Nali, L. H. d. S.; Leal, C. O. D.; Sabino, E. C.; Lacerda, E. M.; Kingdon, C. C.; Nacul, L.; Romano, C. M.

10.1101/693465 — molecular biology — Posted on 2019-10-24

984 Use of a counterselectable transposon to create markerless knockouts from a 18,432-clone ordered M. bovis BCG mutant resource

Borgers, K.; Vandewalle, K.; Van Hecke, A.; Michielsen, G.; Plets, E.; van Schie, L.; Vanmarcke, S.; Schindfessel, L.; Festjens, N.; Callewaert, N.

10.1101/817007 — microbiology — Posted on 2019-10-24

985 Structural and biochemical analyses of Caulobacter crescentus ParB reveal the role of its N-terminal domain in chromosome segregation

Jalal, A. S. B.; Pastrana, C. L.; Tran, N. T.; Stevenson, C. E.; Lawson, D. M.; Moreno-Herrero, F.; Le, T. B. K.

10.1101/816959 — microbiology — Posted on 2019-10-24

986 Toxoplasma gondii requires its plant-like heme biosynthesis pathway for infection.

Bergmann, A.; Floyd, K.; Key, M.; Dameron, C.; Rees, K. C.; Whitehead, D. C.; Hamza, I.; Dou, Z.

10.1101/753863 — microbiology — Posted on 2019-10-24

987 Local introgression at two spatial scales in mosaichybrid zones of mussels

Simon, A.; Fraïsse, C.; El Ayari, T.; Liautard-Haag, C.; Strelkov, P.; Welch, J. J.; Bierne, N.

10.1101/818559 — evolutionary biology — Posted on 2019-10-24

988 Correlating surface plasmon resonance microscopy of living and fixated cells with electron microscopy allows for investigation of potential preparation artifacts

Kreysing, E.; Seyock, S.; Hassani, H.; Brauweiler-Reuters, E.; Neumann, E.; Offenhaeusser, A.

10.1101/817288 — biophysics — Posted on 2019-10-24

989 Systematic evaluation of normalization methods for glycomics data based on performance of network inference

Benedetti, E.; Gerstner, N.; Pucic-Bakovic, M.; Keser, T.; Reiding, K. R.; Ruhaak, L. R.; Stambuk, T.; Selman, M. H. J.; Rudan, I.; Polasek, O.; Hayward, C.; Beekman, M.; Slagboom, E.; Wuhrer, M.; Dunlop, M. G.; Lauc, G.; Krumsiek, J.

10.1101/814244 — bioinformatics — Posted on 2019-10-24

990 A pan-plant protein complex map reveals deep conservation and novel assemblies

McWhite, C. D.; Papoulas, O.; Drew, K.; Cox, R. M.; June, V.; Dong, O. X.; Kwon, T.; Wan, C.; Salmi, M. L.; Roux, S. J.; Browning, K. S.; Chen, Z. J.; Ronald, P. C.; Marcotte, E. M.

10.1101/815837 — systems biology — Posted on 2019-10-24

991 Two Receptor-Like Kinases Required For Arabidopsis Endodermal Root Organisation Shape The Rhizosphere Microbiome

Durr, J.; Reyt, G.; Spaepen, S.; Hilton, S.; Meehan, C.; Qi, W.; Kamiya, T.; Flis, P.; Dickinson, H. G.; Feher, A.; Bending, G.; Schulze-Lefert, P.; Salt, D. E.; Gutierrez-Marcos, J.

10.1101/816330 — plant biology — Posted on 2019-10-24

992 The Brassica napus Wall-Associated Kinase-Like (WAKL) gene Rlm9 provides race-specific blackleg resistance

Larkan, N. J.; Ma, L.; Haddadi, P.; Buchwaldt, M.; Parkin, I. A. P.; Djavaheri, M.; Borhan, M. H.

10.1101/815845 — plant biology — Posted on 2019-10-24

993 Maize nested introgression library provides evidence for the involvement of liguleless1 in resistance to northern leaf blight

Kolkman, J. M.; Strable, J.; Harline, K.; Kroon, D. E.; Wiesner-Hanks, T.; Bradbury, P.; Nelson, R. J.

10.1101/818518 — plant biology — Posted on 2019-10-24

994 State Change Probability: A Measure of the Complexity of Cardiac RR Interval Time Series Using Physiological State Change with Statistical Hypothesis Testing

Chao, H.-H.; Huang, H.-P.; Wei, S.-Y.; Hsu, C. F.; Hsu, L.; Chi, S.

10.1101/817650 — physiology — Posted on 2019-10-24

995 PyVOL: a PyMOL plugin for visualization, comparison, and volume calculation of drug-binding sites

Smith, R. H. B.; Dar, A. C.; Schlessinger, A.

10.1101/816702 — pharmacology and toxicology — Posted on 2019-10-24

996 Transcriptomic Profile Analysis of Brain Inferior Colliculus Following Acute Hydrogen Sulfide Exposure

Kim, D.-S.; Anantharam, P.; Padhi, P.; Thedens, D. R.; Li, G.; Gilbreath, E.; Rumbeiha, W. K.

10.1101/816710 — pharmacology and toxicology — Posted on 2019-10-24

997 Promises and pitfalls of in vivo evolution to improve phage therapy

Bull, J. J.; Levin, B. R.; Molineux, I. J.

10.1101/816678 — microbiology — Posted on 2019-10-24

998 A chromosome-scale genome assembly of European Hazel (Corylus avellana L.) reveals targets for crop improvement

Lucas, S. J.; Kahraman, K.; Avsar, B.; Buggs, R. J. A.; Bilge, I.

10.1101/817577 — genomics — Posted on 2019-10-24

999 Gene Expression Networks in the Drosophila Genetic Reference Panel

Everett, L. J.; Huang, W.; Zhou, S.; Carbone, M. A.; Lyman, R.; Arya, G.; Geisz, M. S.; Ma, J.; Morgante, F.; St. Armour, G.; Turlapati, L.; Anholt, R. R. H.; Mackay, T. F. C.

10.1101/816579 — genomics — Posted on 2019-10-24

1000 Insulin-like growth factor-1 (IGF-1), insulin-like growth factor-binding protein-3 (IGFBP-3) and breast cancer risk: observational and Mendelian randomization analyses

Murphy, N.; Knuppel, A.; Papadimitriou, N.; Martin, R.; Tsilidis, K. K.; Smith-Byrne, K.; Fenson, G.; Perez-Cornago, A.; Travis, R. C.; Key, T. J.; Gunter, M. J.

10.1101/809046 — genetics — Posted on 2019-10-24

1001 And if you gaze long into an abyss, the abyss gazes also into thee: four morphs of Arctic charr adapting to a depth-gradient in Lake Tinnsjoen

Ostbye, K.; Hagen Hassve, M.; Tamayo Peris, A.-M.; Hagenlund, M.; Vogler, T.; Praebel, K.

10.1101/817866 — evolutionary biology — Posted on 2019-10-24

1002 Developmental variability drives mouse molar evolution along an evolutionary line of least resistance

HAYDEN, L.; LOCHOVSKA, K.; SEMON, M.; RENAUD, S.; DELIGNETTE-MULLER, M.-L.; VILCOT, M.; PETERKOVA, R.; HOVORAKOVA, M.; PANTALACCI, S.

10.1101/818484 — evolutionary biology — Posted on 2019-10-24

1003 Divergent sperm traits in Carabidae ground beetles (Insecta: Coleoptera)

Sasakawa, K.

10.1101/817635 — evolutionary biology — Posted on 2019-10-24

1004 Network-based metrics of community resilience and dynamics in lake ecosystems

Armstrong McKay, D. I.; Dyke, J. G.; Dearing, J. A.; Doncaster, C. P.; Wang, R.

10.1101/810762 — ecology — Posted on 2019-10-24

1005 Pangenomic read mapping

Sheikhizadeh Anari, S.; de Ridder, D.; Schranz, M. E.; Smit, S.

10.1101/813634 — bioinformatics — Posted on 2019-10-24

1006 Canonical host-pathogen tradeoffs subverted by mutations with dual benefits

Beardmore, R. E.; Gudelj, I.; Meyer, J. R.; Hewlett, M.; Pena-Miller, R.

10.1101/818492 — evolutionary biology — Posted on 2019-10-24

1007 A data-driven method for reconstructing and modelling social interactions in moving animal groups

Escobedo, R.; Lecheval, V.; Papaspyros, V.; Bonnet, F.; Mondada, F.; Sire, C.; Theraulaz, G.

10.1101/816777 — animal behavior and cognition — Posted on 2019-10-24

1008 The usage of human IGHJ genes follows a particular nonrandom selection: The recombination signal sequence affects the usage of human IGHJ genes

Shi, B.; Dong, X.; Ma, Q.; Sun, S.; Ma, L.; Yu, J.; Wang, X.; Pan, J.; He, X.; Su, D.; Yao, X.

10.1101/792085 — genomics — Posted on 2019-10-24

1009 Structural Brain Imaging Studies Offer Clues about the Effects of the Shared Genetic Etiology among Neuropsychiatric Disorders

Radonjic, N. V.; Hess, J. L.; Rovira, P.; Andreassen, O.; Buitelaar, J. K.; Ching, C. R. K.; Franke, B.; Hoogman, M.; Jahanshad, N.; McDonald, C.; Schmaal, L.; Sisodiya, S. M.; Stein, D. J.; van den Heuvel, O. A.; van Erp, T. G. M.; van Rooij, D.; Veltman, D. J.; Thompson, P.; Faraone, S. V.

10.1101/809582 — neuroscience — Posted on 2019-10-24

1010 Homo-Oligomers in Signal Transduction: Dynamics, Homeostasis, Ultrasensitivity, Bistability

Koch, D.

10.1101/758789 — systems biology — Posted on 2019-10-24

1011 Topoisomerase II inhibitors induce cGAS-STING dependent inflammation resulting in cytokine induction and immune checkpoint activation

Wilkinson, R. D. A.; McCabe, N.; Parkes, E. E.; Barros, E. M.; Johnston, D. I.; Ali, R.; Lappin, K.; Greenberg, R.; Harkin, D. P.; McIntosh, S. A.; Kennedy, R. D.; Savage, K. I.

10.1101/764662 — cancer biology — Posted on 2019-10-24

1012 Coiled-coil registry shifts in the F684I mutant of Bicaudal result in cargo-independent activation of dynein motility

Cui, H.; Trybus, K. M.; Ali, M. Y.; Goyal, P.; Zhang, K.; Aura, X. D.; Loh, J. Y.; Solmaz, S. R.

10.1101/776187 — biophysics — Posted on 2019-10-24

1013 Ion-networks: a sparse data format capturing full data integrity of data independent acquisition mass spectrometry

Willems, S.; Daled, S.; Van Puyvelde, B.; De Clerck, L.; Vande Casteele, S.; Van Nieuwerburgh, F.; Deforce, D.; Dhaenens, M.

10.1101/726273 — bioinformatics — Posted on 2019-10-24

1014 How does the mood stabilizer lithium bind ATP, the energy currency of the cell

Haimovich, A.; Goldbourt, A.

10.1101/637900 — biochemistry — Posted on 2019-10-24

1015 An improved pig reference genome sequence to enable pig genetics and genomics research

Warr, A.; Affara, N.; Aken, B.; Beiki, H.; Bickhart, D. M.; Billis, K.; Chow, W.; Eory, L.; Finlayson, H. A.; Flicek, P.; Giron, C. G.; Griffin, D. K.; Hall, R.; Hannum, G.; Hourlier, T.; Howe, K.; Hume, D. A.; Izuogu, O.; Kim, K.; Koren, S.; Liu, H.; Manchanda, N.; Martin, F. J.; Nonneman, D. J.; O'Connor, R. E.; Phillippy, A. M.; Rohrer, G. A.; Rosen, B. D.; Rund, L. A.; Sargent, C. A.; Schook, L. B.; Schroeder, S. G.; Schwartz, A. S.; Skinner, B. M.; Talbot, R.; Tseng, E.; Tuggle, C. K.; Watson, M.; Smith, T. P.; Archibald, A. L.

10.1101/668921 — genomics — Posted on 2019-10-24

1016 Common gardens in teosintes reveal the establishment of a syndrome of adaptation to altitude

Fustier, M.-A.; Martinez-Ainsworth, N. E.; Aguirre-Liguori, J.; Venon, A.; Corti, H.; Rousselet, A.; Dumas, F.; Dittberner, H.; Camarena, M. G.; Grimanelli, D.; Ovaskainen, O.; Falque, M.; Moreau, L.; de Meaux, J.; Montes-Hernandez, S.; Eguiarte, L. E.; Vigouroux, Y.; Manicacci, D.; Tenaillon, M. I.

10.1101/563585 — evolutionary biology — Posted on 2019-10-24

1017 Comparison of ecological, biological and anthropogenic causes of vehicle-wildlife collisions among three large herbivore species

Saint-Andrieux, C.; Calenge, C.; Bonenfant, C.

10.1101/385161 — ecology — Posted on 2019-10-24

1018 Distribution and density of oxpeckers on giraffes in Hwange National Park, Zimbabwe

Gagnon, R.; Mabika, C. T.; Bonenfant, C.

10.1101/621151 — ecology — Posted on 2019-10-24

1019 The ratio between centromeric proteins CENP-A and CENP-C maintains homeostasis of human centromeres

Melters, D. P.; Rakshit, T.; Bui, M.; Grigoryev, S. A.; Sturgill, D.; Dalal, Y.

10.1101/604223 — biochemistry — Posted on 2019-10-24

1020 Temporal ordering of input modulates connectivity formation in a developmental neuronal network model of the cortex

Hartley, C.; Farmer, S.; Berthouze, L.

10.1101/355800 — neuroscience — Posted on 2019-10-24

1021 LEMMI: A continuous benchmarking platform for metagenomics classifiers

Seppey, M.; Manni, M.; Zdobnov, E. M.

10.1101/507731 — microbiology — Posted on 2019-10-24

1022 Growth under high light and elevated temperature affects metabolic responses and accumulation of health-promoting metabolites in kale varieties

Alegre, S.; Pascual, J.; Trotta, A.; Gollan, P.; Yang, W.; Yang, B.; Aro, E.-M.; Burow, M.; Kangasjärvi, S.

10.1101/816405 — plant biology — Posted on 2019-10-24

1023 Meniscal and ligament modifications in spontaneous and post-traumatic mouse models of osteoarthritis

Ramos-Mucci, L.; Javaheri, B.; van 't Hof, R.; Bou-Gharios, G.; Pitsillides, A. A.; Comerford, E.; Poulet, B.

10.1101/816306 — pathology — Posted on 2019-10-24

1024 Hypoxia mediated regulation of mitochondrial transcription factors: Implications of hypertensive renal physiology

Natarajan, B.; Arige, V.; Khan, A. A.; Reddy, S. S.; Bharthwal, M.; Mahapatra, N. R.

10.1101/816470 — molecular biology — Posted on 2019-10-24

1025 An integrated platform for genome engineering and gene expression perturbation in Plasmodium falciparum

Nasamu, A. S.; Falla, A.; Pasaje, C. F. A.; Wall, B. A.; Wagner, J. C.; Ganesan, S. M.; Goldfless, S. J.; Niles, J. C.

10.1101/816504 — microbiology — Posted on 2019-10-24

1026 Vibrio pore-forming leukocidin activates pyroptotic cell death via the NLRP3 inflammasome

Baram, N.; Cohen, H.; Edry-Botzer, L.; Salomon, D.; Gerlic, M.

10.1101/816553 — immunology — Posted on 2019-10-24

1027 USMPep: Universal Sequence Models for Major Histocompatibility Complex Binding Affinity Prediction

Vielhaben, J.; Wenzel, M.; Samek, W.; Strodthoff, N.

10.1101/816546 — immunology — Posted on 2019-10-24

1028 Increased ultra-rare variant load in an isolated Scottish population impacts exonic and regulatory regions

10.1101/809244 — genomics — Posted on 2019-10-24

1029 Rice Bean (Vigna umbellata) draft genome sequence: unravelling the late flowering and unpalatability related genomic resources for efficient domestication of this underutilized crop.

Kaul, T.; Eswaran, M.; Thangaraj, A.; Meyyazhagan, A.; Nehra, M.; Raman, N. M.; Bharti, J.; DR, G.; Badapanda, C.; Balamurali, B.

10.1101/816595 — genomics — Posted on 2019-10-24

1030 Genetic control of the human brain proteome

Robins, C.; Wingo, A. P.; Fan, W.; Doung, D. M.; Meigs, J.; Gerasimov, E. S.; Dammer, E. B.; Cutler, D. J.; De Jager, P.; Bennett, D. A.; Lah, J. J.; Levey, A. I.; Seyfried, N. T.; Wingo, T. S.

10.1101/816652 — genetics — Posted on 2019-10-24

1031 The latitudinal gradient in hand-wing-index: global patterns and predictors of wing morphology in birds

Sheard, C.; Neate-Clegg, M. H. C.; Alioravainen, N.; Jones, S. E. I.; Vincent, C.; MacGregor, H. E. A.; Bregman, T. P.; Claramunt, S.; Tobias, J. A.

10.1101/816603 — evolutionary biology — Posted on 2019-10-24

1032 Bias in two-sample Mendelian randomization by using covariable-adjusted summary associations

Hartwig, F. P.; Tilling, K.; Davey-Smith, G.; Lawlor, D. A.; Borges, M.-C.

10.1101/816363 — genetics — Posted on 2019-10-24

1033 A large-scale species level dated angiosperm phylogeny for evolutionary and ecological analyses

Janssens, S.; Couvreur, T. L. P.; Mertens, A.; Dauby, G.; Dagallier, L.-P.; Vanden Abeele, S.; Vandelook, F.; Mascarello, M.; Beeckman, H.; Sosef, M.; Droissart, V.; van der Bank, M.; Maurin, O.; Hawthorne, W.; Marshall, C.; Rejou-Mechain, M.; Beina, D.; Baya, F.; Merckx, V.; Verstraete, B.; Hardy, O.

10.1101/809921 — evolutionary biology — Posted on 2019-10-24

1034 Generation and Trapping of a Mesoderm Biased State of Human Pluripotency

Stavish, D.; Boiers, C.; Price, C.; Frith, T. J. R.; Halliwell, J.; Barbaric, I.; Brown, J.; Carr, J.; James, C.; Andrews, P. W.; Enver, T.

10.1101/813071 — cell biology — Posted on 2019-10-24

1035 CPlantBox, a whole plant modeling framework for the simulation of water and carbon related processes

Zhou, X.-R.; Schnepf, A.; Vanderborght, J.; Leitner, D.; Lacointe, A.; Vereecken, H.; Lobet, G.

10.1101/810507 — plant biology — Posted on 2019-10-24

1036 Transduction of mechanical cellular oscillation by the plasma-membrane mechanosensitive channel MSL10

Tran, D.; Girault, T.; Guichard, M.; Thomine, S.; Leblanc-Fournier, N.; Moulia, B.; de Langre, E.; Allain, J.-M.; Frachisse, J.-M.

10.1101/815191 — plant biology — Posted on 2019-10-24

1037 Micro-electrode in vivo signatures of human periventricular heterotopia

Frazzini, V.; Whitmarsh, S.; Lambrecq, V.; Lehongre, K.; Yger, P.; Mathon, B.; Adam, C.; Hasboun, D.; Navarro, V.

10.1101/816173 — pathology — Posted on 2019-10-24

1038 Surface LSP1 is a phenotypic marker distinguishing human classical versus monocyte-derived dendritic cells

Moutel, S.; Beugnet, A.; Schneider, A.; Lombard, B.; Loew, D.; Amigorena, S.; Perez, F.; Segura, E.

10.1101/813410 — immunology — Posted on 2019-10-24

1039 Syncytins enable novel possibilities to transduce human or mouse primary B cells and to achieve well-tolerated in vivo gene transfer

Coquin, Y.; Ferrand, M.; Seye, A. K.; Menu, L.; Galy, A.

10.1101/816223 — immunology — Posted on 2019-10-24

1040 MNase profiling of promoter chromatin in S. typhimurium-stimulated GM12878 cells reveals dynamic and response-specific nucleosome architecture

Dennis, J. H.; Cole, L. A.

10.1101/816348 — genomics — Posted on 2019-10-24

1041 Single-cell sequencing of mouse thymocytes reveals mutational landscape shaped by replication errors, mismatch repair and H3K36me3

Aska, E.-M.; Dermadi, D.; Kauppi, L.

10.1101/816207 — genomics — Posted on 2019-10-24

1042 Characterization of splice isoform switching during human kidney development

Wineberg, Y.; Kanter, I.; Ben-Haim, N.; Pode-Shakked, N.; Bucris, E.; Bar-Lev, T. H.; Oriel, S.; Yehuda, Y.; Gershon, R.; Shukrun, R.; Bar-Lev, D. D.; Urbach, A.; Dekel, B.; Kalisky, T.

10.1101/816371 — genomics — Posted on 2019-10-24

1043 On the relation of phase separation and Hi-C maps to epigenetics in mammalian cells

Singh, P. B.; Newman, A. G.

10.1101/814566 — genetics — Posted on 2019-10-24

1044 An integrated platform to systematically identify causal variants and genes for polygenic human traits.

Downes, D. J.; Schwessinger, R.; Hill, S. J.; Nussbaum, L.; Scott, C.; Gosden, M. E.; Hirschfeld, P. P.; Telenius, J. M.; Eijsbouts, C. E.; McGowan, S. J.; Cutler, A. J.; Kerry, J.; Davies, J. L.; Dendrou, C. A.; Inshaw, J. R. J.; Larke, M. S. C.; Oudelaar, A. M.; Bozhilov, Y.; King, A.; Brown, R. C.; Suciu, M. C.; Davies, J. O. J.; Hublitz, P.; Fisher, C.; Kurita, R.; Nakamura, Y.; Taylor, S.; Buckle, V. J.; Todd, J. A.; Higgs, D. R.; Hughes, J. R.

10.1101/813618 — genetics — Posted on 2019-10-24

1045 Epigenetic Effects of Assisted Reproductive Technology in Human Offspring

Wei, C.; Peng, Y.; Ma, X. y.; Kong, S. M.; Tang, S. y.; Wei, Y.; Zhao, Y. y.; Zhang, W.; Wang, Y.; Yan, L. y.; Qiao, J.

10.1101/816157 — genetics — Posted on 2019-10-24

1046 Positioning Personal Polygenic Risk score against the population background.

Leonenko, G.; Baker, E.; Schmidt, K. M.; Escott-Price, V.

10.1101/813170 — bioinformatics — Posted on 2019-10-24

1047 Amyloid damage to islet β-cells in type 2 diabetes: hypoxia or pseudo-hypoxia?

Bellotti, V.; Corazza, A.; Foglia, B.; Novo, E.; Simons, J. P.; Mangione, P. P.; Verona, G.; Canetti, D.; Nocerino, P.; Obici, L.; Vanoli, A.; Paulli, M.; Giorgetti, S.; Raimondi, S.; Al-Shawi, R.; Tennent, G. A.; Taylor, G. W.; Gillmore, J. D.; Pepys, M. B.; Parola, M.

10.1101/810747 — biochemistry — Posted on 2019-10-24

1048 Pleiotropy of Bcl-2 family proteins is an ancient trait in the metazoan evolution

Popgeorgiev, N.; Jabbour, L.; Nguyen, T. T. M.; Ralchev, N.; Gadet, R.; Manon, S.; Osigus, H.-J.; Schierwater, B.; Rimokh, R.; Gillet, G.

10.1101/816322 — evolutionary biology — Posted on 2019-10-24

1049 CTRL: a label-free method for dynamic measurement of single-cell volume

Yao, K.; Rochman, N.; Sun, S.

10.1101/817189 — cell biology — Posted on 2019-10-24

1050 Isolating the sources of heterogeneity in nanoparticle-cell interactions

Johnston, S. T.; Faria, M.; Crampin, E. J.

10.1101/817569 — biophysics — Posted on 2019-10-24

1051 CDK1 couples proliferation with protein synthesis

Haneke, K.; Schott, J.; Lindner, D.; Hollensen, A. K.; Damgaard, C. K.; Mongis, C.; Knop, M.; Palm, W.; Ruggieri, A.; Stoecklin, G.

10.1101/816850 — biochemistry — Posted on 2019-10-24

1052 Persistent chromatin states, pervasive transcription, and shared cis-regulatory sequences have shaped the C. elegans genome.

Bellush, J. M.; Whitehouse, I.

10.1101/817130 — developmental biology — Posted on 2019-10-24

1053 Desmosomal coupling in apoptotic cell extrusion

Thomas, M.; Ladoux, B.; Toyama, Y.

10.1101/816280 — cell biology — Posted on 2019-10-24

1054 The transcriptional signature associated with human motile cilia

Patir, A.; Fraser, A. M.; Barnett, M. W.; McTeir, L.; Rainger, J.; Davey, M. G.; Freeman, T. C.

10.1101/817072 — cell biology — Posted on 2019-10-24

1055 Cohesin depleted cells pass through mitosis and reconstitute a functional nuclear architecture

Cremer, M.; Brandstetter, K.; Maiser, A.; Rao, S. S.; Schmid, V.; Mitra, N.; Mamberti, S.; Klein, K. N.; Gilbert, D. M.; Leonhardt, H.; Cardoso, M. C.; Lieberman Aiden, E.; Harz, H.; Cremer, T.

10.1101/816611 — cell biology — Posted on 2019-10-24

1056 Thermal versus Mechanical Unfolding in a Model Protein

Tapia-Rojo, R.; Mazo, J. J.; Falo, F.

10.1101/816801 — biophysics — Posted on 2019-10-24

1057 Step-wise Hydration of Magnesium by Four Water Molecules Precedes Phosphate Release in a Myosin Motor

Mugnai, M. L.; Thirumalai, D.

10.1101/817254 — biophysics — Posted on 2019-10-24

1058 Catalysis by a rigid enzyme

Ben Bdira, F.; Waudby, C. A.; N. Volkov, A.; Schroder, S.; AB, E.; Codee, J.; Overkleeft, H. S.; Aerts, H.; van Ingen, H.; Ubbink, M.

10.1101/815415 — biochemistry — Posted on 2019-10-24

1059 The DNA damage response regulates the oocyte pool in mammals

Martinez-Marchal, A.; Guillot, M. T.; Ferrer, M.; Guixe, A.; Garcia-Caldes, M.; Roig, I.

10.1101/816488 — developmental biology — Posted on 2019-10-24

1060 Cell based strain stiffening of a non-fibrous matrix as organizing principle for morphogenesis

Ruediger, D.; Kick, K.; Goychuk, A.; Vollmar, A.; Frey, E.; Zahler, S.

10.1101/816496 — cell biology — Posted on 2019-10-24

1061 Copper is an essential regulator of the autophagic kinases ULK1/2 to drive lung adenocarcinoma

Tsang, T.; Posimo, J. M.; Gudiel, A. A.; Cicchini, M.; Feldser, D. M.; Brady, D. C.

10.1101/816587 — cancer biology — Posted on 2019-10-24

1062 Myelin development in visual scene-network tracts beyond late childhood: A multimethod neuroimaging study

Meissner, T. W.; Genc, E.; Mädler, B.; Weigelt, S.

10.1101/662809 — neuroscience — Posted on 2019-10-24

1063 Broad-Spectrum Antifungal Activities and Mechanism of Drimane Sesquiterpenoids

Edouarzin, E.; Horn, C.; Paudyal, A.; Zhang, C.; Lu, J.; Tong, Z.; Giaever, G.; Nislow, C.; Veerapandian, R.; Hua, D.; Vediyappan, G.

10.1101/816082 — microbiology — Posted on 2019-10-24

1064 Deep Learning-Based Point-Scanning Super-Resolution Imaging

Fang, L.; Monroe, F.; Novak, S. W.; Kirk, L.; Schiavon, C. R.; Yu, S. B.; Zhang, T.; Wu, M.; Kastner, K.; Kubota, Y.; Zhang, Z.; Pekkurnaz, G.; Mendenhall, J.; Harris, K.; Howard, J.; Manor, U.

10.1101/740548 — bioinformatics — Posted on 2019-10-24

1065 Neurons expressing pathological Tau protein trigger dramatic noninflammatory changes in microglial morphology and dynamics

Hassan-Abdi, R.; Brenet, A.; Bennis, M.; Yanicostas, C.; Soussi-Yanicostas, N.

10.1101/731901 — neuroscience — Posted on 2019-10-24

1066 Dual stochasticity of the cortex as a most efficient and biologically plausible learning algorithm

Teramae, J.-n.

10.1101/811646 — neuroscience — Posted on 2019-10-24

1067 Trade-offs and selection conflicts in hybrid poplars indicate the stomatal ratio as an important trait regulating disease resistance.

Fetter, K. C.; Nelson, D. M.; Keller, S. R.

10.1101/814046 — evolutionary biology — Posted on 2019-10-24

1068 Allosteric regulation of Glutamate dehydrogenase deamination activity

Bera, S.; Rashid, M.; Sun, G.-Q.; Medvinsky, A. B.; Li, B.-L.; Acquisti, C.; Sljoka, A.; Chakraborty, A.

10.1101/786954 — systems biology — Posted on 2019-10-24

1069 The Bayesian polyvertex score (PVS-B): a whole-brain phenotypic prediction framework for neuroimaging studies

Zhao, W.; Palmer, C. E.; Thompson, W. K.; Jernigan, T. L.; Dale, A. M.; Fan, C. C.

10.1101/813915 — neuroscience — Posted on 2019-10-24

1070 CNN explains tuning properties of anterior, but not middle, face-processing areas in macaque IT

Raman, R.; Hosoya, H.

10.1101/686121 — neuroscience — Posted on 2019-10-24

1071 Resource conservation manifests in the genetic code

Shenhav, L.; Zeevi, D.

10.1101/790345 — microbiology — Posted on 2019-10-24

1072 Operating Characteristics of the Rank-Based Inverse Normal Transformation for Quantitative Trait Analysis in Genome-Wide Association Studies

McCaw, Z. R.; Lane, J. M.; Saxena, R.; Redline, S.; Lin, X.

10.1101/635706 — genetics — Posted on 2019-10-24

1073 Massively parallel CRISPRi assays reveal concealed thermodynamic determinants of dCas12a binding

Specht, D. A.; Xu, Y.; Lambert, G.

10.1101/777565 — biophysics — Posted on 2019-10-24

1074 Cue-induced effects on decision-making distinguish subjects with gambling disorder from healthy controls

Genauck, A.; Andrejevic, M.; Brehm, K.; Matthis, C.; Heinz, A.; Weinreich, A.; Kathmann, N.; Romanczuk-Seiferth, N.

10.1101/564781 — neuroscience — Posted on 2019-10-24

1075 The genome of Ectocarpus subulatus - a highly stress-tolerant brown alga

Dittami, S. M.; Corre, E.; Brillet-Gueguen, L.; Lipinska, A. P.; Pontoizeau, N.; Aite, M.; Avia, K.; Caron, C.; Cho, C. H.; Collen, J.; Cormier, A.; Delage, L.; Doubleau, S.; Frioux, C.; Gobet, A.; Gonzalez-Navarrete, I.; Groisillier, A.; Herve, C.; Jollivet, D.; KleinJan, H.; Leblanc, C.; Liu, X.; Marie, D.; Markov, G. V.; Minoche, A. E.; Monsoor, M.; Pericard, P.; Perrineau, M.-M.; Peters, A. F.; Siegel, A.; Simeon, A.; Trottier, C.; Yoon, H. S.; Himmelbauer, H.; Boyen, C.; Tonon, T.

10.1101/307165 — genomics — Posted on 2019-10-24

1076 The Basic Reproductive Number for Disease Systems with Multiple Coupled Heterogeneities

Lloyd, A.; Kitron, U.; Perkins, A.; Vazquez Prokopec, G.; Waller, L.

10.1101/220004 — epidemiology — Posted on 2019-10-24

1077 When should patch connectivity affect local species richness? Pinpointing adequate methods in adequate landscapes using simulations.

Laroche, F.; Balbi, M.; Grebert, T.; Jabot, F.; Archaux, F.

10.1101/640995 — ecology — Posted on 2019-10-24

1078 Seed-dispersal networks in tropical forest fragments: area effects, remnant species, and interaction diversity

Emer, C.; Pizo, M. A.; Ribeiro, M. C.; da Silva, F. R.; Jordano, P.; Galetti, M.

10.1101/701730 — ecology — Posted on 2019-10-24

1079 Blood and Tissue Biomarker Analysis in Dogs with Osteosarcoma Treated with Palliative Radiation and Intra-Tumoral Autologous Natural Killer Cell Transfer

Canter, R.; Judge, S. J.; Yanagisawa, M.; Sturgill, I. R.; Bateni, S. B.; Gingrich, A. A.; Foltz, J. A.; Lee, D. A.; Modiano, J. F.; Monjazeb, A. M.; Culp, W. T. N.; Rebhun, R. B.; Murphy, W. J.; Kent, M. S.

10.1101/816439 — immunology — Posted on 2019-10-23

1080 Radiographic and clinical risk factors of total knee arthroplasty in asymptomatic knees; a 15-year follow-up study

Nielsen, F. K.; Jurik, A. G.; Jorgensen, A.; Egund, N.

10.1101/816462 — pathology — Posted on 2019-10-23

1081 Temporal models using environmental variables to predict Aedes aegypti oviposition activity in a temperate region of Argentina.

Benitez, E. M.; Estallo, E. L.; Grech, M.; Frias-Cespedes, M.; Almiron, W. R.; Luduena-Almeida, F. F.

10.1101/816421 — ecology — Posted on 2019-10-23

1082 INTERACTION BETWEEN MYRICETIN AGGREGATES AND LIPASE UNDER SIMPLIFIED INTESTINAL CONDITIONS

Bustos, A.-S.; Hakansson, A.; Linares-Pasten, J. A.; Nilsson, L.

10.1101/816454 — biochemistry — Posted on 2019-10-23

1083 Target Of Rapamycin pathway in the white-rot fungus Phanerochaete chrysosporium

Nguyen, V. D.; Roret, T.; Fernandez Gonzalez, A.; Kohler, A.; Gelhaye, E.; Morel-Rouhier, M.; sormani, r.

10.1101/816447 — microbiology — Posted on 2019-10-23

1084 Liver cells and PBMC secrete Tumor-suppressive Plasma Extracellular Vesicles in Melanoma patients

Baur, A. S.; Lee, J.-H.; Eberhardt, M.; Blume, K.; Vera-Gonzalez, J.

10.1101/809301 — cancer biology — Posted on 2019-10-23

1085 Spatial co-fragmentation pattern of cell-free DNA recapitulates in vivo chromatin organization and identifies tissues-of-origin

Liu, Y.; Liu, T.-Y.; Weinberg, D. E.; White, B. W.; De La Torre, C. J.; Tan, C. L.; Schmitt, A. D.; Selvaraj, S.; Tran, V.; Laurent, L. C.; Cabel, L.; Bidard, F.-C.; Putcha, G.; Haque, I. S.

10.1101/564773 — genomics — Posted on 2019-10-23

Fountain-Jones, N. M.; Kraberger, S.; Gagne, R.; Trumbo, D. R.; Salerno, P.; Funk, W. C.; Crooks, K.; Biek, R.; Alldredge, M.; Logan, K.; Baele, G.; Dellicour, S. M.; Ernest, H. B.; VandeWoude, S.; Carver, S.; Craft, M. E.

10.1101/816009 — ecology — Posted on 2019-10-23

1087 Analysis of single-cell gene pair coexpression landscapes by stochastic kinetic modeling reveals gene-pair interactions in development

Gallivan, C.; Ren, H.; Read, E.

10.1101/815878 — systems biology — Posted on 2019-10-23

1088 Three criteria of intrinsically theoretical categories in biological system and classification of some medical plants

Zou, H.

10.1101/814871 — plant biology — Posted on 2019-10-23

1089 Effective application of machine learning to microbiome-based classification problems

Topcuoglu, B. D.; Lesniak, N. A.; Ruffin, M. T.; Wiens, J.; Schloss, P. D.

10.1101/816090 — microbiology — Posted on 2019-10-23

1090 Broad-Spectrum Antifungal Activities and Mechanism of Drimane Sesquiterpenoids

Edouarzin, E.; Horn, C.; Paduyal, A.; Zhang, C.; Lu, J.; Tong, Z.; Giaever, G.; Nislow, C.; Veerapandian, R.; Hua, D.; Vediyappan, G.

10.1101/816082 — microbiology — Posted on 2019-10-23

1091 Improving cell distribution on 3D additive manufactured scaffolds through engineered seeding media density and viscosity

Camara Torres, M.; Sinha, R.; Mota, C.; Moroni, L.

10.1101/815621 — bioengineering — Posted on 2019-10-23

1092 Interactions of helices on interdomain interface couple the chemistry of intermediate formation with allostery in Plasmodium falciparum GMP synthetase

Shivakumaraswamy, S.; Pandey, N.; Ballut, L.; Violot, S.; Aghajari, N.; Balaram, H.

10.1101/808618 — biochemistry — Posted on 2019-10-23

1093 Contrasting inflammatory signatures in peripheral blood and bronchoalveolar cells reveal compartment-specific effects of HIV infection.

Muema, D.; Mthembu, M.; Schiff, A.; Singh, U.; Bjorn, C.; Bassett, T.; Rasehlo, S. S.; Nyamande, K.; Khan, D. F.; Maharaj, P.; Mitha, M.; Suleman, M.; Mhlane, Z.; Naidoo, T.; Ramjit, D.; Karim, F.; Kwon, D.; Ndung'u, T.; Wong, E. B.

10.1101/804229 — immunology — Posted on 2019-10-23

1094 Finding hidden treasures: a child-friendly neural test of task-following in individuals using functional transcranial Doppler ultrasound

Petit, S.; Badcock, N. A.; Woolgar, A.

10.1101/815910 — animal behavior and cognition — Posted on 2019-10-23

1095 Targeting AGTR1/NF-κB /CXCR4 axis by miR-155 attenuates oncogenesis in Glioblastoma

Singh, A.; Srivastava, N.; Ateeq, B.

10.1101/815068 — cancer biology — Posted on 2019-10-23

1096 Detection of urinary metabolites of metabolic pathway disorders by using VTGE and LC-HRMS techniques

Kumar, A.; Kothari, J.; Bhatkar, D.; Mitruka, M.; Pal, R.; Sarode, S. C.; Sharma, N. K.

10.1101/814970 — biochemistry — Posted on 2019-10-23

1097 Losing Control: Sleep Deprivation Impairs the Suppression of Unwanted Thoughts

Harrington, M. O.; Ashton, J. E.; Sankarasubramanian, S.; Anderson, M. C.; Cairney, S. A.

10.1101/813121 — neuroscience — Posted on 2019-10-23

1098 Synthesis of low immunogenicity RNA with high-temperature in vitro transcription.

Wu, M. Z.; Asahara, H.; Tzertzinis, G.; Roy, B.

10.1101/815092 — molecular biology — Posted on 2019-10-23

1099 Three-dimensional Structural Interrelations between Cells, Extracellular Matrix and Mineral in Vertebrate Mineralization

Zou, Z.; Tang, T.; Macias-Sanchez, E.; Sviben, S.; Landis, W.; Bertinetti, L.; Fratzl, P.

10.1101/803007 — bioengineering — Posted on 2019-10-23

1100 Disrupted remapping of place cells and grid cells in knock-in model of Alzheimer’s disease

Jun, H.; Soma, S.; Saito, T.; Saido, T. C.; Igarashi, K. M.

10.1101/815993 — pathology — Posted on 2019-10-23

1101 A sparse occupancy model to quantify species interactions in time and space

Ait Kaci Azzou, S.; Aebischer, T.; Singer, L.; Wolf, B.; Wegmann, D.

10.1101/815027 — ecology — Posted on 2019-10-23

1102 GAD: a Python script for dividing genome annotation files into feature-based files

Karam, A.; Yasser, N.

10.1101/815860 — bioinformatics — Posted on 2019-10-23

1103 Test-time augmentation for deep learning-based cell segmentation on microscopy images

Moshkov, N.; Mathe, B.; Kertesz-Farkas, A.; Hollandi, R.; Horvath, P.

10.1101/814962 — bioinformatics — Posted on 2019-10-23

1104 Enabling community-based metrology for wood-degrading fungi

Perez, R.; Luccioni, M.; Gaut, N.; Stirling, F.; Kamakaka, R.; Adamala, K. P.; Silver, P. A.; Endy, D.

10.1101/815852 — synthetic biology — Posted on 2019-10-23

1105 The effect of variant interference on de novo assembly for viral deep sequencing

Castro, C. J.; Marine, R. L.; Ramos, E.; Ng, T. F. F.

10.1101/815480 — microbiology — Posted on 2019-10-23

1106 Assessment of DNA methylation differences between carriers of APOE ε4 and APOE ε2

Walker, R. M.; Vaher, K.; Bermingham, M. L.; Morris, S. W.; Bretherick, A. D.; Zeng, Y.; Rawlik, K.; Amador, C.; Campbell, A.; Haley, C. S.; Hayward, C.; Porteous, D. J.; McIntosh, A. M.; Marioni, R.; Evans, K. L.

10.1101/815035 — genetics — Posted on 2019-10-23

1107 What would it take to describe the global diversity of parasites?

Carlson, C. J.; Phillips, A. J.; Dallas, T. A.; Alexander, L. W.; Bansal, S.

10.1101/815902 — ecology — Posted on 2019-10-23

1108 An interactive retrieval system for clinical trial studies with context-dependent protocol elements

Park, J.; Kim, K.; Park, S.; Hwang, W.; Yoo, S.; Yi, G.; Lee, D.

10.1101/814996 — bioinformatics — Posted on 2019-10-23

1109 GPU-accelerated mesh-based Monte Carlo photon transport simulations

Fang, Q.; Yan, S.

10.1101/815977 — bioengineering — Posted on 2019-10-23

1110 Dual stochasticity of neurons and synapses provides a biologically plausible learning

Teramae, J.-n.

10.1101/811646 — neuroscience — Posted on 2019-10-23

1111 Characterization of Arabidopsis thaliana promoter bidirectionality and antisense RNAs by depletion of nuclear RNA decay enzymes

Thieffry, A.; Bornholdt, J.; Ivanov, M.; Brodersen, P.; Sandelin, A.

10.1101/809194 — genomics — Posted on 2019-10-23

1112 Rapid and differential evolution of the venom composition of a parasitoid wasp depending on the host strain

Cavigliasso, F.; Mathe-Hubert, H.; Kremmer, L.; Rebuf, C.; Gatti, J.-L.; Malausa, T.; Colinet, D.; Poirie, M.

10.1101/796649 — evolutionary biology — Posted on 2019-10-23

1113 An Evaluation of the In Vitro Roles and Mechanisms of Silibinin in Reducing Pyrazinamide- and Isoniazid-Induced Hepatocellular Damage

Goh, Z.-H.; Tee, J. K.; Ho, H. K.

10.1101/815241 — pharmacology and toxicology — Posted on 2019-10-23

1114 eMED-DNA: An in silico operating system for clinical medical data storage within the human genome

Jakaria, M.; Sarker, K.; Uddin, M. R.; Islam, M. M.; Das, T.; Shakur, R.; Bayzid, M. S.

10.1101/814830 — bioinformatics — Posted on 2019-10-23

1115 Perturbation-based gene regulatory network inference to unravel oncogenic mechanisms

Morgan, D.; Studham, M.; Tjärnberg, A.; Swartling, F. J.; Weishaupt, H.; Nordling, T. E. M.; Sonnhammer, E. L. L.

10.1101/735514 — systems biology — Posted on 2019-10-23

1116 A modular cloning toolkit for genome editing in plants

Hahn, F.; Korolev, A.; Sanjurjo Loures, L.; Nekrasov, V.

10.1101/738021 — plant biology — Posted on 2019-10-23

1117 Bi-directional modification of sleep and wake by amyloid beta oligomers

Ozcan, G. G.; Lim, S.; Leighton, P. L. A.; Allison, W. T.; Rihel, J.

10.1101/610014 — neuroscience — Posted on 2019-10-23

1118 Let’s take a break: Head motion during fMRI tasks is reduced in children and adults if data acquisition is distributed across sessions or days

Meissner, T. W.; Walbrin, J.; Nordt, M.; Koldewyn, K.; Weigelt, S.

10.1101/816116 — neuroscience — Posted on 2019-10-23

1119 Fully Automated Brain Tumor Segmentation and Survival Prediction of Gliomas using Deep Learning and MRI

Bangalore Yogananda, C. G.; Nalawade, S.; Murugesan, G. K.; Wagner, B.; Pinho, M.; Fei, B.; Madhuranthakam, A.; Maldjian, J. A.

10.1101/760157 — neuroscience — Posted on 2019-10-23

1120 HP1γ binding pre-mRNA at intronic repeats increases splicing fidelity and regulates alternative exon usage.

Rachez, C.; Legendre, R.; Costallat, M.; Varet, H.; Yi, J.; Kornobis, E.; Muchardt, C.

10.1101/686790 — molecular biology — Posted on 2019-10-23

1121 Gut microbiota structure differs between honey bees in winter and summer

Kesnerova, L.; Emery, O.; Troilo, M.; Liberti, J.; Erkosar, B.; Engel, P.

10.1101/703512 — microbiology — Posted on 2019-10-23

1122 Repression of Viral Gene Expression and Replication by the Unfolded Protein Response Effector XBP1u

Hinte, F.; van Anken, E.; Tirosh, B.; Brune, W.

10.1101/763227 — microbiology — Posted on 2019-10-23

1123 Gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure

Zrimec, J.; Buric, F.; Muhammad, A. S.; Chen, R.; Verendel, V.; Topel, M.; Zelezniak, A.

10.1101/792531 — bioinformatics — Posted on 2019-10-23

1124 Long-term associative memory in rats: effects of familiarization period in object-place-context recognition test

Shimoda, S.; Ozawa, T.; Yamada, K.; Ichitani, Y.

10.1101/728295 — animal behavior and cognition — Posted on 2019-10-23

1125 An Escherichia coli ST131 pangenome atlas reveals population structure and evolution across 4,071 isolates

Decano, A. G.; Downing, T.

10.1101/719583 — genomics — Posted on 2019-10-23

1126 Analysis of genes within the schizophrenia-linked 22q11.2 deletion identifies interaction of night owl/LZTR1 and NF1 in GABAergic sleep control

Maurer, G. W.; Malita, A.; Nagy, S.; Koyama, T.; Werge, T.; Halberg, K. A.; Texada, M. J.; Rewitz, K.

10.1101/755454 — animal behavior and cognition — Posted on 2019-10-23

1127 A theory of learning to infer

Dasgupta, I.; Schulz, E.; Tenenbaum, J. B.; Gershman, S. J.

10.1101/644534 — animal behavior and cognition — Posted on 2019-10-23

1128 Accuracy, Robustness and Scalability of Dimensionality Reduction Methods for Single Cell RNAseq Analysis

Sun, S.; Zhu, J.; Ma, Y.; Zhou, X.

10.1101/641142 — genomics — Posted on 2019-10-23

1129 Evidence of transcription at polyT short tandem repeats

Bessiere, C.; Saraswat, M.; Grapotte, M.; Menichelli, C.; Ramilowski, J.; Severin, J.; Hayashizaki, Y.; Itoh, M.; Hasegawa, A.; Suzuki, H.; Carninci, P.; de Hoon, M.; W. Wasserman, W.; Brehelin, L.; Lecellier, C.-H.

10.1101/634261 — genomics — Posted on 2019-10-23

1130 ModEx: A text mining system for extracting mode of regulation of Transcription Factor-gene regulatory interaction

Farahmand, S.; Riley, T.; Zarringhalam, K.

10.1101/672725 — bioinformatics — Posted on 2019-10-23

1131 Spatiotemporal drivers of crop pests and pathogens abundance at the landscape scale

Delaune, T.; Ballot, R.; Sausse, C.; Felix, I.; Chen, M.; Maupas, F.; Morison, M.; Makowski, D.; Barbu, C. M.

10.1101/641555 — ecology — Posted on 2019-10-23

1132 RACK1 is required for axon guidance and local translation at growth cone point contacts

Kershner, L.; Bumbledare, T.; Cassidy, P.; Bailey, S.; Welshhans, K.

10.1101/816017 — neuroscience — Posted on 2019-10-23

1133 Quantifying nerve decussation abnormalities in the optic chiasm

Puzniak, R. J.; Ahmadi, K.; Kaufmann, J.; Gouws, A.; Morland, A. B.; Pestilli, F.; Hoffmann, M. B.

10.1101/633347 — neuroscience — Posted on 2019-10-23

1134 Hunger for Knowledge: How the Irresistible Lure of Curiosity is Generated in the Brain

Lau, J. K. L.; Ozono, H.; Kuratomi, K.; Komiya, A.; Murayama, K.

10.1101/473975 — neuroscience — Posted on 2019-10-23

1135 EEG correlates of perceived food product similarity in a cross-modal taste-visual task

Domracheva, M.; Kulikova, S.

10.1101/814939 — neuroscience — Posted on 2019-10-23

1136 Difficulties with speech-in-noise perception related to fundamental grouping processes in auditory cortex

Holmes, E.; Zeidman, P.; Friston, K. J.; Griffiths, T. D.

10.1101/814913 — neuroscience — Posted on 2019-10-23

1137 Phenotype-based screening of synthetic cannabinoids in a Dravet Syndrome zebrafish model

Griffin, A.; Anvar, M.; Hamling, K.; Baraban, S. C.

10.1101/815811 — neuroscience — Posted on 2019-10-23

1138 Interactions between emotion and action in the brain

Portugal, L. C. L.; Alves, R. d. C.; Fernandes, O.; Sanchez, T. A.; Mocaiber, I.; Volchan, E.; Erthal, F. C. S.; David, I. d. P. A.; Kim, J.; de Oliveira, L.; Padmala, S.; Chen, G.; Pessoa, L.; Pereira, M. G.

10.1101/812594 — neuroscience — Posted on 2019-10-23

1139 Dendritic NMDA receptors in parvalbumin neurons enable strong and stable neuronal assemblies

Cornford, J. H.; Mercier, M. S.; Leite, M.; Magloire, V.; Häusser, M.; Kullmann, D. M.

10.1101/279505 — neuroscience — Posted on 2019-10-23

1140 Determining the association between cortical morphology and cognition in 10,145 children from the Adolescent Brain and Cognitive Development (ABCD) study using the MOSTest

Palmer, C. E.; Zhao, W. E.; Loughnan, R. J.; Fan, C. C.; Thompson, W. K.; Jernigan, T. L.; Dale, A. M.

10.1101/816025 — neuroscience — Posted on 2019-10-23

1141 Protein profiling reveals the characteristic changes of complement cascade pathway in the tissues of gastric signet ring cell carcinoma

Fan, Y.; Bai, B.; Ren, Y.; Liu, Y.; Zhou, F.; Lou, X.; Zi, J.; Hou, G.; Zhao, Q.; Liu, S.

10.1101/816272 — cell biology — Posted on 2019-10-23

1142 Patched regulates lipid homeostasis by controlling cellular cholesterol levels

Cadena Del Castillo, C. E.; Hannich, J. T.; Kaech, A.; Chiyoda, H.; Fukuyama, M.; Færgeman, N. J.; Riezman, H.; Spang, A.

10.1101/816256 — cell biology — Posted on 2019-10-23

1143 The cryo-EM structure of human CST reveals a two-megadalton decameric assembly bound to telomeric DNA

Lim, C. J.; Barbour, A. T.; Zaug, A. J.; McKay, A. E.; Wuttke, D. S.; Cech, T. R.

10.1101/815886 — biophysics — Posted on 2019-10-23

1144 Localized axolemma deformations suggest mechanoporation as axonal injury trigger

Montanino, A.; Saeedimasine, M.; Villa, A.; Kleiven, S.

10.1101/816108 — bioengineering — Posted on 2019-10-23

1145 Chlamydomonas sp. UWO241 exhibits high cyclic electron flow and rewired metabolism under high salinity

Kalra, I.; Wang, X.; Cvetkovska, M.; Jeong, J.; McHargue, W.; Zhang, R.; Hüner, N. P. A.; Yuan, J. S.; Morgan-Kiss, R. M.

10.1101/813824 — plant biology — Posted on 2019-10-23

1146 Digitally Deconstructing Leaves in 3D Using X-ray Microcomputed Tomography and Machine Learning

Theroux-Rancourt, G.; Jenkins, M. R.; Brodersen, C. R.; McElrone, A.; Forrestel, E. J.; Earles, J. M.

10.1101/814954 — plant biology — Posted on 2019-10-23

1147 Diagnosis of Centrocestus formosanus Infection in Zebrafish (Danio rerio): A Window on a New Globalization-Derived Invasive Parasite.

Pace, A.; Dipineto, L.; Aceto, S.; Censullo, M. C.; Valoroso, M. C.; Varriale, L.; Rinaldi, L.; Menna, L. F.; Fioretti, A.; Borrelli, L.

10.1101/814699 — microbiology — Posted on 2019-10-23

1148 Topoisomerase IIα Prevents, But Does Not Resolve, Ultrafine Anaphase Bridges By Two Mechanisms

Gemble, S.; Buhagiar-Labarchede, G.; Onclercq-Delic, R.; Lambert, S.; Amor-Gueret, M.

10.1101/815001 — cell biology — Posted on 2019-10-23

1149 Identification of bridgin, an unconventional linker, connects the outer kinetochore to centromeric chromatin

Sridhar, S.; Hori, T.; Nakagawa, R.; Fukagawa, T.; Sanyal, K.

10.1101/816199 — cell biology — Posted on 2019-10-23

1150 Deglycosylation of isoflavone C-glucoside puerarin by combination of two recombinant bacterial enzymes and 3-oxo-glucose.

Nakamura, K.; Zhu, S.; Komatsu, K.; Hattori, M.; Iwashima, M.

10.1101/816074 — biochemistry — Posted on 2019-10-23

1151 In vitro activity of beauvericin against all developmental stages of Sarcoptes scabiei

Al Khoury, C.; Nemer, N.; Nemer, G.; Kurban, M.; Bernigaud, C.; Fischer, K.; Guillot, J.

10.1101/814707 — microbiology — Posted on 2019-10-23

1152 Genomic surveillance of Escherichia coli ST131 identifies local expansion and serial replacement of subclones

Ludden, C.; Decano, A. G.; Jamrozy, D. M.; Pickard, D.; Morris, D.; Parkhill, J.; Peacock, S.; Cormican, M.; Downing, T.

10.1101/814731 — genomics — Posted on 2019-10-23

1153 eMED-DNA: An in silico operating system for clinical medical data storage within the human genome

Jakaria, M.; Sarker, K.; Uddin, M. R.; Islam, M. M.; Das, T.; Bayzid, M. S.; Shakur, R.

10.1101/814830 — bioinformatics — Posted on 2019-10-23

1154 The Bayesian polyvertex score (PVS-B): a whole-brain phenotypic prediction framework for neuroimaging studies

Zhao, W.; Palmer, C. E.; Thompson, W. K.; Jernigan, T. L.; Dale, A. M.; Fan, C. C.

10.1101/813915 — neuroscience — Posted on 2019-10-23

1155 Differential Effects of SUMO1/2 on Circadian Protein PER2 Stability and Function

Chen, L.-C.; Hsieh, Y.-L.; Kuo, T.-Y.; Chou, Y.-C.; Hsu, P.-H.; Hwang-Verslues, W. W.

10.1101/789222 — molecular biology — Posted on 2019-10-23

1156 Transcription-independent TFIIIC-bound sites cluster near heterochromatin boundaries within lamina-associated domains in C. elegans

Stutzman, A. V.; Beilinson, V.; Liang, A.; Ikegami, K.

10.1101/813642 — molecular biology — Posted on 2019-10-23

1157 A tale of winglets: evolution of flight morphology in stick insects

Zeng, Y.; O'Maley, C.; Singhal, S.; Rahim, F.; Park, S.; Chen, X.; Dudley, R.

10.1101/774067 — evolutionary biology — Posted on 2019-10-23

1158 Genetic underpinnings of sociability in the UK Biobank

Bralten, J.; Klemann, C. J. H. M.; Mota, N. R.; de Witte, W.; Arango, C.; Fabbri, C.; Kas, M. J.; van der Wee, N.; Penninx, B. W. J. H.; Serretti, A.; Franke, B.; Poelmans, G.

10.1101/781195 — genetics — Posted on 2019-10-23

1159 AMP-activated protein kinase and adenylate kinase prevent the ATP catastrophe and cytotoxic protein aggregation

Takaine, M.; Imamura, H.; Yoshida, S.

10.1101/801738 — cell biology — Posted on 2019-10-23

1160 Deep Learning-Based Point-Scanning Super-Resolution Imaging

Fang, L.; Monroe, F.; Novak, S. W.; Kirk, L.; Schiavon, C. R.; Yu, S. B.; Zhang, T.; Wu, M.; Kastner, K.; Kubota, Y.; Zhang, Z.; Pekkurnaz, G.; Mendenhall, J.; Harris, K.; Howard, J.; Manor, U.

10.1101/740548 — bioinformatics — Posted on 2019-10-23

1161 Spectral partitioning identifies individual heterogeneity in the functional network topography of ventral and anterior medial prefrontal cortex

Toro-Serey, C.; Tobyne, S. M.; McGuire, J. T.

10.1101/651117 — neuroscience — Posted on 2019-10-23

1162 Lost in Translation: population genomics and long-read sequencing reveals relaxation of concerted evolution of the ribosomal DNA cistron

Tremble, K. S.; Suz, L. M.; Dentinger, B. T. M.

10.1101/811216 — evolutionary biology — Posted on 2019-10-23

1163 Structural Basis of the Transmembrane Domain Dimerization in the Activation Mechanism of TrkA by NGF

Franco, M. L.; Nadezhdin, K.; Mineev, K.; Goncharuk, S.; Arseniev, A.; Vilar, M.

10.1101/721233 — biochemistry — Posted on 2019-10-23

1164 Time-varying nodal measures with temporal community structure: a cautionary note to avoid misinterpretation

Thompson, W. H.; Kastrati, G.; Finc, K.; Wright, J.; Shine, J. M.; Poldrack, R. A.

10.1101/659508 — neuroscience — Posted on 2019-10-23

1165 A mixed-model approach for powerful testing of genetic associations with cancer risk incorporating tumor characteristics

Zhang, H.; Zhao, N.; Ahearn, T. U.; Wheeler, W.; Garcia-Closas, M.; Chatterjee, N.

10.1101/446039 — genetics — Posted on 2019-10-23

1166 Pregnant womens understanding and conceptualisations of the harms from drinking alcohol: a qualitative study

Gibson, S.; Nagle, C.; Paul, J.; McCarthy, L.; Muggli, E.

10.1101/815209 — scientific communication and education — Posted on 2019-10-22

1167 A new method of teaching medical statistics at medical universities in Guangdong

Chen, Q.; Ma, X.; Yang, X.; Cheng, X.

10.1101/815142 — scientific communication and education — Posted on 2019-10-22

1168 How to better conserve with genetic data: origin and population structure of Brazilian locally adapted hair sheep (Ovis aries) breeds

Paim, T. P.; Paiva, S. R.; Martins de Toledo, N.; Yamaghishi, M. B.; Carneiro, P. L. S.; Faco, O.; Mello de Araujo, A.; Azevedo, H. C.; Caetano, A. R.; McManus, C.

10.1101/815217 — genomics — Posted on 2019-10-22

1169 Lesion of striatal patches disrupts habitual behaviors and increases behavioral variability

Nadel, J.; Pawelko, S. S.; Neidhart, M.; Copes-Finke, D.; Howard, C. D.

10.1101/815167 — neuroscience — Posted on 2019-10-22

1170 Correlation between increased atrial expression of genes related to fatty acid metabolism and autophag y in patients with chronic atrial fibrillation

Shingu, Y.; Takada, S.; Yokota, T.; Shirakawa, R.; Yamada, A.; Ooka, T.; Katoh, H.; Kubota, S.; Matsui, Y.

10.1101/815126 — molecular biology — Posted on 2019-10-22

1171 Ischaemic preconditioning and pharmacological preconditioning with dexmedetomidine in an equine model of small intestinal ischaemia-reperfusion

Kästner, S.; König, K.; Verhaar, N.; Hopster, K.; Rohn, K.; Pfarrer, C.; Neudeck, S.

10.1101/815225 — physiology — Posted on 2019-10-22

1172 Resting behaviour of malaria vectors in a highland and a lowland site of western Kenya: Implication on malaria vector control measures

Machani, M. G.; OCHOMO, E.; Amimo, F.; Kosgei, J.; Munga, S.; Zhou, G.; Githeko, A.; Yan, G.; Afrane, Y.

10.1101/815175 — zoology — Posted on 2019-10-22

1173 Quantification of soy-based feed ingredient entry to the United States by ocean freight shipping and the associated seaports.

Patterson, G. R.; Niederwerder, M.; Dee, S.

10.1101/815134 — scientific communication and education — Posted on 2019-10-22

1174 Ovine fetuses from slaughterhouses: a useful source for neural cell primary cultures

Farina, V.; Gadau, S. D.; Lepore, G.; Carcupino, M.; Zedda, M.

10.1101/815159 — neuroscience — Posted on 2019-10-22

1175 Spontaneous mutations that confer resistance to 2-deoxyglucose act through Hxk2 and Snf1 pathways to regulate gene expression and HXT endocytosis

Soncini, S. R.; Chandrashekarappa, D. G.; Augustine, D. A.; Callahan, K. P.; O'Donnell, A. F.; Schmidt, M.

10.1101/815118 — genetics — Posted on 2019-10-22

1176 Rapid fabrication of collagen bundles mimicking tumor-associated collagen signatures

Gong, X.; Kulwatno, J.; Mills, K.

10.1101/815662 — bioengineering — Posted on 2019-10-22

1177 A Versatile Polypharmacology Platform Promotes Cytoprotection and Viability of Human Pluripotent and Differentiated Cells

Chen, Y.; Tristan, C. A.; Chen, L.; Jovanovic, V.; Malley, C.; Chu, P.-H.; Ryu, S.; Deng, T.; Ormanoglu, P.; Tao, D.; Fang, Y.; Slamecka, J.; LeClair, C. A.; Michael, S.; Austin, C. P.; Simeonov, A.; Singec, I.

10.1101/815761 — cell biology — Posted on 2019-10-22

1178 Nervous System and Tissue Polarity Dynamically Adapt to New Morphologies in Planaria

Bischof, J.; Day, M. E.; Miller, K. A.; LaPalme, J.; Levin, M.

10.1101/815688 — physiology — Posted on 2019-10-22

1179 Variation in host home range decreases rabies vaccination effectiveness by increasing the spatial spread of rabies

McClure, K. M.; Gilbert, A. T.; Chipman, R. B.; Rees, E.; Pepin, K.

10.1101/815100 — ecology — Posted on 2019-10-22

1180 Large-scale Analysis of 2,152 dataset reveals key features of B cell biology and the antibody repertoire

Zhang, Z.; Yang, X.; Wang, M.; Shi, D.; Zhang, Y.; Zeng, H.; Yan, Z.; Lan, C.; Wu, J.; Deng, Y.; Guo, S.; Xu, L.; Ma, C.; Zhang, Y.; Wu, R.; Ou, J.; Liu, C.-j.; Chang, C.; Yang, W.; Zhang, H.; Chen, J.; Qin, L.; Zhou, H.; Bei, J.-X.; Wei, L.; Cao, G.; Yu, X.

10.1101/814590 — immunology — Posted on 2019-10-22

1181 Spatially-mapped single-cell chromatin accessibility

Thornton, C. A.; Mulqueen, R. M.; Torkenczy, K. A.; Lowenstein, E. G.; Fields, A. J.; Steemers, F. J.; Wright, K. M.; Adey, A. C.

10.1101/815720 — genetics — Posted on 2019-10-22

1182 Heritability and family-based GWAS analyses of the N-acyl ethanolamine and ceramide lipidome reveal genetic influence over circulating lipids

McGurk, K. A.; Williams, S. G.; Guo, H.; Watkins, H.; Farrall, M.; Cordell, H. J.; Nicolaou, A.; Keavney, B. D.

10.1101/815654 — genetics — Posted on 2019-10-22

1183 Kinetic fingerprint of antibody therapies predicts outcomes of Alzheimer clinical trials

Linse, S.; Scheidt, T.; Bernfur, K.; Vendruscolo, M.; Dobson, C. M.; Cohen, S. I.; Sileikis, E.; Lundquist, M.; Qian, F.; O'Malley, T.; Bussiere, T.; Weinreb, P. H.; Xu, C. K.; Meisl, G.; Devenish, S.; Knowles, T. P.; Hansson, O.

10.1101/815308 — biophysics — Posted on 2019-10-22

1184 Learning Your Heart Actions From Pulse: ECG Waveform Reconstruction From PPG

Zhu, Q.; Tian, X.; Wong, C.-W.; Wu, M.

10.1101/815258 — bioinformatics — Posted on 2019-10-22

1185 The influence of relationship closeness on default-mode network connectivity during social interactions

Fareri, D. S.; Smith, D. V.; Delgado, M. R.

10.1101/815274 — neuroscience — Posted on 2019-10-22

1186 An aphid host-responsive RNA transcript that migrates systemically in plants promotes aphid reproduction

Chen, Y.; Singh, A.; Kaithakottill, G. G.; Mathers, T. C.; Gravino, M.; Mugford, S. T.; van Oosterhout, C.; Swarbreck, D.; Hogenhout, S. A.

10.1101/813964 — genomics — Posted on 2019-10-22

1187 miRViz: a novel webserver application to visualize and interpret microRNA datasets

Giroux, P.; Bhajun, R.; Segard, S.; Picquenot, C.; Charavay, C.; Desquilles, L.; Pinna, G.; Ginestier, C.; Denis, J.; Cherradi, N.; Guyon, L.

10.1101/813550 — genomics — Posted on 2019-10-22

1188 Loss of Dnmt3a dependent methylation in inhibitory neurons impairs neural function through a mechanism that impacts Rett syndrome

Lavery, L. A.; Ure, K.; Wan, Y.-W.; Luo, C.; Trostle, A. J.; Wang, W.; Lopez, J.; Lucero, J.; Durham, M. A.; Castanon, R.; Nery, J. R.; Liu, Z.; Goodell, M. A.; Ecker, J. R.; Behrens, M. M.; Zoghbi, H.

10.1101/815639 — neuroscience — Posted on 2019-10-22

1189 Multi-Task Reinforcement Learning in Humans

Tomov, M.; Schulz, E.; Gershman, S. J.

10.1101/815332 — neuroscience — Posted on 2019-10-22

1190 An exact, unifying framework for region-based association testing in family-based designs, including higher criticism approaches, SKATs, multivariate and burden tests

Hecker, J.; Townes, F. W.; Kachroo, P.; Lasky-Su, J.; Ziniti, J.; Cho, M. H.; Weiss, S. T.; Laird, N. M.; Lange, C.

10.1101/815290 — genetics — Posted on 2019-10-22

1191 Hox genes are essential for the development of novel serial homologous eyespots on the wings of Bicyclus anynana butterflies

Matsuoka, Y.; Monteiro, A.

10.1101/814848 — evolutionary biology — Posted on 2019-10-22

1192 Top-down modulation of neural envelope tracking: the interplay with behavioral, self-reported and neural measures of listening effort

Decruy, L.; Lesenfants, D.; Vanthornhout, J.; Francart, T.

10.1101/815365 — neuroscience — Posted on 2019-10-22

1193 Inception Capsule Network for Retinal Blood Vessel Segmentation and Centerline Extraction

Kromm, C.; Rohr, K.

10.1101/815555 — bioinformatics — Posted on 2019-10-22

1194 A Multicellular Network Mechanism for Temperature-Robust Food Sensing

Patel, D. S.; Diana, G.; Entchev, E. V.; Zhan, M.; Lu, H.; Ch'ng, Q.

10.1101/815373 — systems biology — Posted on 2019-10-22

1195 In vivo and in vitro human gene essentiality estimations capture contrasting functional constraints

Caldu-Primo, J. L.; Verduzco-Martinez, J. A.; Alvarez-Buylla, M. E.; Davila-Velderrain, J.

10.1101/814855 — systems biology — Posted on 2019-10-22

1196 An Evaluation of the In Vitro Roles and Mechanisms of Silibinin in Reducing Pyrazinamide- and Isoniazid-Induced Hepatocellular Damage

Goh, Z.-H.; Tee, J. K.; Ho, H. K.

10.1101/815241 — pharmacology and toxicology — Posted on 2019-10-22

1197 Dysbiosis in a canine model of human fistulizing Crohn’s disease

Maldonado-Contreras, A.; Ferrer, L.; Cawley, C.; Crain, S.; Toscano, J.; Ward, D. V.; Hoffman, A.

10.1101/815589 — microbiology — Posted on 2019-10-22

1198 On the logic of Fisherian sexual selection

Veller, C.; Muralidhar, P.; Haig, D.

10.1101/815613 — evolutionary biology — Posted on 2019-10-22

1199 Profiling the endothelial translatome in vivo using ‘AngioTag’ zebrafish

Miller, M.; Gildea, D. E.; Monzo, K.; Wiliams-Simons, L.; Pham, V. N.; Aloi, N.; Baxevanis, A. D.; Weinstein, B. M.

10.1101/815696 — developmental biology — Posted on 2019-10-22

1200 Reconstruction of fish allergenicity from the content and structural traits of the component β-parvalbumin isoforms

Perez-Tavarez, R.; Carrera, M.; Pedrosa, M.; Quirce, S.; Rodriguez-Perez, R.; Gasset, M.

10.1101/813659 — biophysics — Posted on 2019-10-22

1201 Widespread dose-dependent effects of RNA expression and splicing on complex diseases and traits

Barbeira, A. N.; Bonazzola, R.; Gamazon, E. R.; Liang, Y.; Park, Y.; Kim-Hellmuth, S.; Wang, G.; Jiang, Z.; Zhou, D.; Hormozdiari, F.; Liu, B.; Rao, A.; Hamel, A. R.; Pividori, M. D.; Aguet, F.; GTEx GWAS Working Group, ; Bastarache, L.; Jordan, D. M.; Verbanck, M.; Do, R.; GTEx Consortium, ; Stephens, M.; Ardlie, K.; McCarthy, M.; Montgomery, S. B.; Segre, A.; Brown, C. D.; Lappalainen, T.; Wen, X.; Im, H. K.

10.1101/814350 — genetics — Posted on 2019-10-22

1202 Area and Geometry Dependence of Cell Migration in Asymmetric Two-State Micropatterns

Fink, A.; Brueckner, D. B.; Schreiber, C.; Roettgermann, P. J. F.; Broedersz, C. P.; Raedler, J. O.

10.1101/815472 — biophysics — Posted on 2019-10-22

1203 In-Depth Characterization and Validation in BRG1-Mutant Lung Cancers Define Novel Catalytic Inhibitors of SWI/SNF Chromatin Remodeling

Jagani, Z.; Chenail, G.; Xiang, K.; Bushold, G.; Bhang, H.-E. C.; Li, A.; Elliott, G.; Zhu, J.; Vattay, A.; Gilbert, T.; Bric, A.; Kikkawa, R.; Dubost, V.; Terranova, R.; Cantwell, J.; Luu, C.; Silver, S.; Shirley, M.; Huet, F.; Maher, R.; Reece-Hoyes, J.; Ruddy, D.; Rakiec, D.; Korn, J.; Russ, C.; Ruda, V.; Dooley, J.; Costa, E.; Park, I.; Moebitz, H.; Nakajima, K.; Adair, C. D.; Mathieu, S.; Ntaganda, R.; Smith, T.; Farley, D.; King, D.; Xie, X.; Kulathila, R.; Hu, T.; Pan, X.; Ma, Q.; Vulic, K.; Rago, F.; Clarkson, S.; Ge, R.; Sigoillot, F.; Pardee, G.; Bagdasarian, L.; McLaughlin, M.; Haas

10.1101/812628 — cancer biology — Posted on 2019-10-22

1204 The polyvertex score (PVS): a whole-brain phenotypic prediction framework for neuroimaging studies

Zhao, W.; Palmer, C. E.; Thompson, W. K.; Jernigan, T. L.; Dale, A. M.; Fan, C. C.

10.1101/813915 — neuroscience — Posted on 2019-10-22

1205 Genome diversification in globally distributed novel marine Proteobacteria is linked to environmental adaptation

Zhou, Z.; Tran, P. Q.; Kieft, K.; Anantharaman, K.

10.1101/814418 — microbiology — Posted on 2019-10-22

1206 Using genetics to differentiate patients with similar symptoms: application to inflammatory arthritis in the rheumatology outpatient clinic

Knevel, R.; le Cessie, S.; Terao, C.; Slowikowski, K.; Cui, J.; Huizinga, T.; Costenbader, K.; Liao, K.; Karlson, E.; Raychaudhuri, S.

10.1101/813220 — genetics — Posted on 2019-10-22

1207 Highly expressed miR-375 is not an intracellular oncogene in Merkel cell polyomavirus-associated Merkel cell carcinoma

Fan, K.; Zebisch, A.; Horny, K.; Schrama, D.; Becker, J. C.

10.1101/813378 — cancer biology — Posted on 2019-10-22

1208 Up-regulation of autophagy by low concentration of salicylic acid delays methyl jasmonate-induced leaf senescence

Yin, R.; Yu, J.; Ji, Y.; Liu, J.; Cheng, L.; Zhou, J.

10.1101/814608 — plant biology — Posted on 2019-10-22

1209 Matrix mechanotransduction mediated by thrombospondin-1/integrin/YAP signaling pathway in the remodeling of blood vessels

Yamashiro, Y.; Thang, B. Q.; Ramirez, K.; Shin, S. J.; Kohata, T.; Ohata, S.; Nguyen, T. A. V.; Ohtsuki, S.; Nagayama, K.; Yanagisawa, H.

10.1101/814533 — molecular biology — Posted on 2019-10-22

1210 Zebrafish cooperate while inspecting predators: experimental evidence for conditional approach

Pimentel, A. F. N.; Lima-Maximino, M. G.; Soares, M. C.; Maximino, C.

10.1101/814434 — animal behavior and cognition — Posted on 2019-10-22

1211 Genetic and clinical analyses of psychosis spectrum symptoms in a large multi-ethnic youth cohort reveal significant link with ADHD.

Olde Loohuis, L. M.; Mennigen, E.; Ori, A. P. S.; Perkins, D.; Robinson, E.; Addington, J.; Cadenhead, K. S.; Cornblatt, B. A.; Mathalon, D. H.; McGlashan, T. H.; Seidman, L. J.; Keshavan, M.; Stone, W.; Tsuang, M. T.; Walker, E. F.; Woods, S. W.; Cannon, T. D.; Gur, R. C.; Gur, R. E.; Bearden, C. E.; Ophoff, R. A.

10.1101/814087 — genetics — Posted on 2019-10-22

1212 Microbial traits and the realized niche in a simple metaorganism

Deines, P.; Hammerschmidt, K.; Bosch, T. C. G.

10.1101/814798 — ecology — Posted on 2019-10-22

1213 Evidence of massive leukemic progenitor expansion in blood during molecular recurrence after TKI discontinuation in chronic myeloid leukemia (CML)

Turhan, A.; Hugues, P.; Sorel, N.; Desterke, C.; Bourhis, J. H.; Bennaceur Griscelli, A.; Chomel, J. C.

10.1101/805648 — cancer biology — Posted on 2019-10-22

1214 WITOD: A Tool for Within-Taxon Operational Taxonomic Unit Diversity Analysis

Cava, J. K.; Li, G.; Du, W.; Cao, H.

10.1101/813444 — bioinformatics — Posted on 2019-10-22

1215 Voltage-sensitive dye imaging reveals inhibitory modulation of ongoing cortical activity

Newton, T. H.; Abdellah, M.; Chevtchenko, G.; Muller, E. B.; Markram, H.

10.1101/812008 — neuroscience — Posted on 2019-10-22

1216 Whole genome sequencing and the application of a SNP panel reveal primary evolutionary lineages and genomic diversity in the lion (Panthera leo)

Bertola, L. D.; Vermaat, M.; Lesilau, F.; Chege, M.; Tumenta, P. N.; Sogbohossou, E. A.; Schaap, O. D.; Bauer, H.; Patterson, B. D.; White, P. A.; de Iongh, H. H.; Laros, J. F.; Vrieling, K.

10.1101/814103 — evolutionary biology — Posted on 2019-10-22

1217 Disentangling the Effects of Asymmetry, Shape Fluctuations, Disorder, and Atomic Details on SAXS Curves of Soft Matter Complexes

Ivanovic, M. T.; Hermann, M. R.; Wojcik, M.; Perez, J.; Hub, J. S.

10.1101/815266 — biophysics — Posted on 2019-10-22

1218 Towards ecologically valid biomarkers: real-life gait assessment in cerebellar ataxia

Ilg, W.; Seemann, J.; Giese, M. A.; Traschütz, A.; Schöls, L.; Timmann, D.; Synofzik, M.

10.1101/802918 — bioengineering — Posted on 2019-10-22

1219 Transcriptomic Profiling of Skeletal Muscle Adaptations to Exercise and Inactivity

Pillon, N. J.; Gabriel, B. M.; Dollet, L.; Smith, J.; Sardon Puig, L.; Botella, J.; Bishop, D. J.; Krook, A.; Zierath, J. R.

10.1101/813048 — physiology — Posted on 2019-10-22

1220 Hearing impairment is associated with enhanced neural tracking of the speech envelope

Decruy, L.; Vanthornhout, J.; Francart, T.

10.1101/815530 — neuroscience — Posted on 2019-10-22

1221 Nonlinear relationship between multimodal adrenergic responses and local dendritic activity in primary sensory cortices

Deitcher, Y.; Leibner, Y.; Kutzkel, S.; Zylbermann, N.; London, M.

10.1101/814657 — neuroscience — Posted on 2019-10-22

1222 Bayesian statistics show a lack of change in excitability following bi-hemispheric HD-TDCS over the primary somatosensory cortices

Gallo, S.; Baaijen, T. J.; Suttrup, J.; Fernandes-Henriques, C.; Keysers, C.; Gazzola, V.

10.1101/814780 — neuroscience — Posted on 2019-10-22

1223 Face discrimination does not outperform house discrimination at foveal to parafoveal locations

Gilaie-Dotan, S.; Kreichman, O.

10.1101/807099 — neuroscience — Posted on 2019-10-22

1224 Flexible reset and entrainment of delta oscillations in primate primary auditory cortex: modeling and experiment

Stanley, D. A.; Falchier, A. Y.; Pittman-Polletta, B. R.; Lakatos, P.; Whittington, M. A.; Schroeder, C. E.; Kopell, N. J.

10.1101/812024 — neuroscience — Posted on 2019-10-22

1225 The effect of variant interference on de novo assembly for viral deep sequencing

Castro, C. J.; Marine, R. L.; Ramos, E.; Ng, T. F. F.

10.1101/815480 — microbiology — Posted on 2019-10-22

1226 A Sensitive Yellow Fever Virus Entry Reporter Identifies Valosin-Containing Protein (VCP/p97) as an Essential Host Factor for Flavivirus Uncoating

Ramanathan, H. N.; Zhang, S.; Douam, F.; Chang, J.; Yang, P. L.; Ploss, A.; Lindenbach, B. D.

10.1101/814764 — microbiology — Posted on 2019-10-22

1227 Structural conservation and diversity of PilZ-related domains

Galperin, M. Y.; Chou, S.-H.

10.1101/814665 — microbiology — Posted on 2019-10-22

1228 Autoimmunity Risk Gene IRGM is a Master Negative Regulator of Interferon Response by Controlling the Activation of cGAS STING and RIG-I-MAVS Signaling Pathways

Jena, K. K.; Mehto, S.; Nath, P.; Chauhan, N. R.; Sahu, R.; Nayak, T. K.; Das, S. K.; Dhar, K.; Sahoo, P. K.; Murmu, K. C.; De, S.; Datey, A.; Prasad, P.; Chattopadhyay, S.; Chauhan, S.; Chauhan, S.

10.1101/815506 — immunology — Posted on 2019-10-22

1229 A method to estimate the frequency of chromosomal rearrangements induced by CRISPR/Cas9 multiplexing in Drosophila.

Ng, W. A.; Reed, B. H.

10.1101/815431 — genetics — Posted on 2019-10-22

1230 Replaying the evolutionary tape to investigate subgenome dominance in allopolyploidBrassica napus

Bird, K. A.; Niederhuth, C.; Ou, S. A.; Gehan, M. A.; Pires, J. C.; Xiong, Z.; VanBuren, R.; Edger, P. P.

10.1101/814491 — evolutionary biology — Posted on 2019-10-22

1231 Information Enhanced Model Selection for High-Dimensional Gaussian Graphical Model with Application to Metabolomic Data

Zhou, J.; Hoen, A.; McRitchie, S.; Pathmasiri, W.; Madan, J.; Viles, W.; Dade, E.; Karagas, M.; Gui, J.

10.1101/815423 — bioinformatics — Posted on 2019-10-22

1232 Trade-offs and selection conflicts in hybrid poplars indicate the stomatal ratio as an important trait regulating disease resistance.

Fetter, K. C.; Nelson, D. M.; Keller, S. R.

10.1101/814046 — evolutionary biology — Posted on 2019-10-22

1233 Entropy of a bacterial stress response is a generalizable predictor for fitness and antibiotic sensitivity.

Zhu, Z.; Surujon, D.; Ortiz-Marquez, J. C.; Wood, S. J.; Huo, W.; Isberg, R. R.; Bento, J.; van Opijnen, T.

10.1101/813709 — systems biology — Posted on 2019-10-22

1234 A biosynthetic platform for antimalarial drug discovery

Wilkinson, M. D.; Lai, H.-E.; Freemont, P.; Baum, J.

10.1101/814715 — synthetic biology — Posted on 2019-10-22

1235 A transcriptional toolbox for exploring peripheral neuro-immune interactions.

Liang, Z.; Hore, Z.; Harley, P.; Stanley, F. U.; Michrowska, A.; Dahiya, M.; LaRussa, F.; Jager, S. E.; Villa, S.; Denk, F.

10.1101/813980 — neuroscience — Posted on 2019-10-22

1236 Genotypic and phenotypic diversity of Staphylococcus aureus from cystic fibrosis lung infections and their interactions with Pseudomonas aeruginosa

Bernardy, E. B.; Petit, R. A.; Raghuram, V.; Alexander, A. M.; Read, T. D.; Goldberg, J. B.

10.1101/814152 — microbiology — Posted on 2019-10-22

1237 Age associated microbiome modulation and its association with systemic inflammation in a Rhesus Macaque Model

Pallikuth, S.; Russell, K. B.; Sirupangi, T.; Mendez, R.; Kvistad, D. K.; Pahwa, R.; Villinger, F.; Banerjee, S.; Pahwa, S.

10.1101/813667 — microbiology — Posted on 2019-10-22

1238 Immunomodulatory effects of cytokine-induced expansion of cytotoxic lymphocytes in a mouse model of lupus-like disease

Reighard, S. D.; Brunner, H. I.; Waggoner, S. N.

10.1101/815399 — immunology — Posted on 2019-10-22

1239 Reassessing the observational evidence for nitrogen deposition impacts in acid grassland: Spatial Bayesian linear models indicate small and ambiguous effects on species richness

Pescott, O. L.; Jitlal, M.

10.1101/808857 — ecology — Posted on 2019-10-22

1240 Distinct DNA metabolism and anti-proliferative effects of goat urine metabolites: An explanation for xeno-tumor heterogeneity

Kumar, A.; Swami, S.; Sharma, N. K.

10.1101/815548 — cancer biology — Posted on 2019-10-22

1241 Reciprocal regulation of pancreatic ductal adenocarcinoma growth and molecular subtype by HNF4α and SIX1/4

Camolotto, S. A.; Belova, V.; Torre-Healy, L.; Vahrenkamp, J.; Berrett, K.; Conway, H.; Stubben, C.; Moffitt, R.; Gertz, J.; Snyder, E.

10.1101/814525 — cancer biology — Posted on 2019-10-22

1242 Short-term circulating tumor cell dynamics in mouse xenograft models and implications for liquid biopsy.

Williams, A.; Fitzgerald, J.; Niedre, M.

10.1101/814368 — bioengineering — Posted on 2019-10-22

1243 Synergistic population encoding and precise coordinated variability across interlaminar ensembles in the early visual system

Denman, D. J.; Reid, R. C.

10.1101/812859 — neuroscience — Posted on 2019-10-22

1244 Detecting prodromal Alzheimer’s disease with MRI through deep learning

Feng, X.; Provenzano, F. A.; Small, S. A.; Alzheimer's Disease Neuroimaging Initiative,

10.1101/813899 — neuroscience — Posted on 2019-10-22

1245 Robust, automated sleep scoring by a compact neural network with distributional shift correction

Barger, Z.; Frye, C. G.; Liu, D.; Dan, Y.; Bouchard, K. E.

10.1101/813345 — neuroscience — Posted on 2019-10-22

1246 Emergence of opposite neurons in a firing-rate model of multisensory integration

Chau, H. Y.; Zhang, W.-H.; Lee, T. S.

10.1101/814483 — neuroscience — Posted on 2019-10-22

1247 Promoter scanning during transcription initiation in Saccharomyces cerevisiae: Pol II in the \"shooting gallery\"

Qiu, C.; Jin, H.; Vvedenskaya, I.; Llenas, J. A.; Zhao, T.; Malik, I.; Schwartz, S. L.; Cui, P.; Cabart, P.; Han, K. H.; Metz, R. P.; Johnson, C. D.; Sze, S.-H.; Pugh, B. F.; Nickels, B. E.; Kaplan, C. D.

10.1101/810127 — molecular biology — Posted on 2019-10-22

1248 A novel humanized mouse model to study the function of human cutaneous memory T cells in vivo in human skin

Klicznik, M. M.; Benedetti, A.; Gail, L. M.; Holly, R.; Varkhande, S. R.; Laimer, M.; Stoecklinger, A.; Sir, A.; Reitsamer, R.; Rosenblum, M. D.; Campbell, D. J.; Murauer, E.; Gratz, I. K.

10.1101/490060 — immunology — Posted on 2019-10-22

1249 A multifaceted approach to analyzing taxonomic, functional and phylogenetic β-diversity

Nakamura, G.; Vicentin, W.; Súarez, Y. R.; Duarte, L. d. S.

10.1101/814467 — ecology — Posted on 2019-10-22

1250 A Bayesian approach to inferring dispersal kernels with incomplete mark-recapture data

Terui, A.

10.1101/813790 — ecology — Posted on 2019-10-22

1251 The GMD-biplot and its application to microbiome data

Wang, Y.; Randolph, T.; Shojaie, A.; Ma, J.

10.1101/814269 — bioinformatics — Posted on 2019-10-22

1252 Axonal gap junctions in the fly visual system enable fast prediction for evasive flight maneuvers

Wang, S.; Borst, A.; Segev, I.; Palmer, S.

10.1101/814319 — neuroscience — Posted on 2019-10-22

1253 Local extirpation is pervasive among populations of Galapagos endemic tomatoes

Gibson, M. J.; Torres, M. d. L.; Moyle, L. C.

10.1101/814160 — evolutionary biology — Posted on 2019-10-22

1254 Metabolic complementarity between a brown alga and associated cultivable bacteria provide indications of beneficial interactions

Burgunter-Delamare, B.; KleinJan, H.; Frioux, C.; Fremy, E.; Wagner, M.; Corre, E.; Le Salver, A.; Leroux, C.; Leblanc, C.; Boyen, C.; Siegel, A.; Dittami, S. M.

10.1101/813683 — systems biology — Posted on 2019-10-22

1255 Shape coding in occipito-temporal cortex relies on object silhouette, curvature and medial-axis

Papale, P.; Leo, A.; Handjaras, G.; Cecchetti, L.; Pietrini, P.; Ricciardi, E.

10.1101/814251 — neuroscience — Posted on 2019-10-22

1256 Transcriptomic support for the Immunocompetence Handicap Hypothesis but not the Oxidation Handicap Hypothesis

Newhouse, D. J.; Vernasco, B. J.

10.1101/814178 — evolutionary biology — Posted on 2019-10-22

1257 Small-scale spatial structure influences large-scale invasion rates

Plank, M. J.; Simpson, M. J.; Binny, R. N.

10.1101/814582 — cell biology — Posted on 2019-10-22

1258 TreeFix-TP: Phylogenetic Error-Correction for Infectious Disease Transmission Network Inference

Sledzieski, S.; Zhang, C.; Mandoiu, I.; Bansal, M. S.

10.1101/813931 — bioinformatics — Posted on 2019-10-22

1259 A comparative study of topology-based pathway enrichment analysis methods

Ma, J.; Shojaie, A.; Michailidis, G.

10.1101/814145 — systems biology — Posted on 2019-10-22

1260 Transcription-independent TFIIIC-bound sites cluster near heterochromatin boundaries within lamina-associated domains in C. elegans

Stutzman, A. V.; Beilinson, V.; Liang, A.; Ikegami, K.

10.1101/813642 — molecular biology — Posted on 2019-10-22

1261 Genome Sequence of Segmented Filamentous Bacteria Present in the Human Intestine

Jonsson, H.; Hugerth, L. W.; Sundh, J.; Andersson, A. F.

10.1101/813196 — microbiology — Posted on 2019-10-22

1262 Opening Pandora’s Box: Distribution of Plasmodium gametocytes in bloodstream

Pigeault, R.; Isaia, J.; Yerbanga, S. R.; Kounbobr, R. D.; Ouedraogo, J. B.; Cohuet, A.; Lefevre, T.; Christe, P.

10.1101/806513 — evolutionary biology — Posted on 2019-10-22

1263 Rapid assessment of the suitability of multi-species citizen science datasets for occupancy trend analysis

Pocock, M. J. O.; Logie, M. W.; Isaac, N. J. B.; Outhwaite, C. L.; August, T.

10.1101/813626 — ecology — Posted on 2019-10-22

1264 Implications of Immune-Mediated Metastatic Growth on Metastatic Dormancy, Blow-Up, Early Detection, and Treatment

Rhodes, A. R.; Hillen, T.

10.1101/814095 — cancer biology — Posted on 2019-10-22

1265 Understanding strategy use during cognitive task performance

Clark, I. A.; Monk, A. M.; Maguire, E. A.

10.1101/807990 — neuroscience — Posted on 2019-10-22

1266 High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant

Spasov, E.; Tsuji, J. M.; Hug, L. A.; Doxey, A. C.; Sauder, L. A.; Parker, W. J.; Neufeld, J. D.

10.1101/529826 — microbiology — Posted on 2019-10-22

1267 Phenotypic clustering reveals distinct subtypes of polycystic ovary syndrome with novel genetic associations

Dapas, M.; Lin, F. T. J.; Nadkarni, G. N.; Sisk, R.; Legro, R. S.; Urbanek, M.; Hayes, M. G.; Dunaif, A.

10.1101/814210 — genomics — Posted on 2019-10-22

1268 Clathrin light chain diversity regulates lattice properties and efficiency of synaptic vesicle formation

Redlingshoefer, L.; McLeod, F.; Camus, M. D.; Chen, Y.; Burden, J. J.; Palomer Vila, E.; Briant, K.; Dannhauser, P. N.; Salinas, P. C.; Brodsky, F.

10.1101/815183 — cell biology — Posted on 2019-10-22

1269 Chromosome organization by one-sided and two-sided loop extrusion

Banigan, E. J.; van den Berg, A. A.; Brandao, H. B.; Marko, J. F.; Mirny, L. A.

10.1101/815340 — biophysics — Posted on 2019-10-22

1270 Large-scale simulation of biomembranes: bringing realistic kinetics to coarse-grained models

Sadeghi, M.; Noe, F.

10.1101/815571 — biophysics — Posted on 2019-10-22

1271 DNA fingerprinting: an effective tool for taxonomic identification of processed precious corals

Lendvay, B.; Cartier, L. E.; Gysi, M.; Meyer, J. B.; Krzemnicki, M. S.; Kratzer, A.; Morf, N. V.

10.1101/813865 — zoology — Posted on 2019-10-22

1272 Altered germline cyst and oocyte differentiation in Tex14 mutant mice reveal a new mechanism underlying female reproductive life-span

Nuzhat, N.; Ikami, K.; Abbott, H.; Tanner, H.; Spradling, A. C.; Lei, L.

10.1101/814384 — developmental biology — Posted on 2019-10-22

1273 Multiple layers of phospho-regulation coordinate metabolism and the cell cycle in budding yeast

Zhang, L.; Winkler, S.; Schlottmann, F.; Kohlbacher, O. C.; Elias, J. E.; Skotheim, J. M.; Ewald, J. C.

10.1101/815084 — cell biology — Posted on 2019-10-22

1274 A model for the emergence of RNA from a prebiotically plausible mixture of ribonucleotides, arabinonucleotides and 2’-deoxynucleotides

Kim, S.; Zhou, L.; Zhang, W.; O'Flaherty, D. K.; Rondo-Brovetto, V.; Szostak, J. W.

10.1101/813675 — biochemistry — Posted on 2019-10-22

1275 Manumycin Polyketides Act as Molecular Glues Between UBR7 and P53 to Impair Breast Cancer Pathogenicity

Isobe, Y.; Okumura, M.; White, R.; McGregor, L. M.; McKenna, J. M.; Tallarico, J. A.; Schirle, M.; Maimone, T. J.; Nomura, D. K.

10.1101/814285 — biochemistry — Posted on 2019-10-22

1276 Ketamine anesthesia induces gain enhancement via recurrent excitation in granular input layers of the auditory cortex

Deane, K. E.; Brunk, M. G. K.; Curran, A. W.; Zempeltzi, M. M.; Ma, J.; Lin, X.; Abela, F.; Aksit, S.; Deliano, M.; Ohl, F. W.; Happel, M. F. K.

10.1101/810978 — neuroscience — Posted on 2019-10-22

1277 A Mean-Field Description of Bursting Dynamics in Spiking Neural Networks with Short-Term Adaptation

Gast, R.; Schmidt, H.; Knoesche, T. R.

10.1101/806273 — neuroscience — Posted on 2019-10-22

1278 Open-source 3D printed air-jet for generating monodispersed alginate microhydrogels

Hadley, D. J.; Gabriel, M. H.; Campbell, K. T.; Silva, E. A.

10.1101/804849 — bioengineering — Posted on 2019-10-22

1279 Combining Crowdsourcing and Deep Learning to Assess Public Opinion on CRISPR-Cas9

Muller, M.; Schneider, M.; Salathe, M.; Vayena, E.

10.1101/802454 — scientific communication and education — Posted on 2019-10-22

1280 Common gene expression signatures in Parkinson’s disease are driven by changes in cell composition

Nido, G. S.; Dick, F.; Toker, L.; Pettersen, K.; Alves, G.; Tysnes, O.-B.; Jonassen, I.; Kristoffer, H.; Tzoulis, C.

10.1101/778910 — neuroscience — Posted on 2019-10-22

1281 Evolution of an amniote-specific mechanism for modulating ubiquitin signalling via phosphoregulation of the E2 enzyme UBE2D3

Roman-Trufero, M.; Ito, C. M.; Pedebos, C.; Magdalou, I.; Wang, Y.-F.; Karimi, M. M.; Moyon, B.; Webster, Z.; Di Gregorio, A.; Azuara, V.; Khalid, S.; Speck, C.; Rodriguez, T.; Dillon, N.

10.1101/750505 — developmental biology — Posted on 2019-10-22

1282 Adapting the novel-object recognition task to quantify how much attention rodents allocate to motivationally-salient objects

Hornoiu, I.; Gigg, J.; Talmi, D.

10.1101/495945 — neuroscience — Posted on 2019-10-22

1283 Motif elucidation in ChIP-seq datasets with a knockout control

Denisko, D.; Viner, C.; Hoffman, M.

10.1101/721720 — bioinformatics — Posted on 2019-10-22

1284 Deep Learning-Based Point-Scanning Super-Resolution Imaging

Fang, L.; Monroe, F.; Novak, S. W.; Kirk, L.; Schiavon, C. R.; Yu, S. B.; Zhang, T.; Wu, M.; Kastner, K.; Kubota, Y.; Zhang, Z.; Pekkurnaz, G.; Mendenhall, J.; Harris, K.; Howard, J.; Manor, U.

10.1101/740548 — bioinformatics — Posted on 2019-10-22

1285 Structural mechanism of regioselectivity in an unusual bacterial acyl-CoA dehydrogenase

Blake-Hedges, J. M.; Henrique Pereira, J.; Cruz-Morales, P.; Thompson, M. G.; Barajas, J. F.; Chen, J.; Krishna, R. N.; Chan, L. J. G.; Nimlos, D.; Alonso-Martinez, C.; Baidoo, E.; Chen, Y.; Gin, J. W.; Katz, L.; Petzold, C. J.; Adams, P. D.; Keasling, J. D.

10.1101/736256 — biochemistry — Posted on 2019-10-22

1286 Capillary morphogenesis gene 2 mediates multiple pathways of growth factor-induced angiogenesis by regulating endothelial cell chemotaxis

Cryan, L.; Tsang, T.-M.; Stiles, J.; Bazinet, L.; Lee, S.-L.; Garrard, S.; Roberts, C.; Payne, J.; Ackroyd, P. C.; Christensen, K. A.; Rogers, M.

10.1101/705442 — biochemistry — Posted on 2019-10-22

1287 Cellular deconvolution of GTEx tissues powers eQTL studies to discover thousands of novel disease and cell-type associated regulatory variants

Donovan, M. K. R.; D'Antonio-Chronowska, A.; D'Antonio, M.; Frazer, K. A.

10.1101/671040 — genetics — Posted on 2019-10-22

1288 Variational Autoencoders for Cancer Data Integration: Design Principles and Computational Practice

Simidjievski, N.; Bodnar, C.; Tariq, I.; Scherer, P.; Andres-Terre, H.; Shams, Z.; Jamnik, M.; Lio', P.

10.1101/719542 — bioinformatics — Posted on 2019-10-22

1289 Differential effects of variations in human P450 oxidoreductase on the aromatase activity of CYP19A1 polymorphisms R264C and R264H

Parween, S.; Di Nardo, G.; Baj, F.; Zhang, C.; Gilardi, G.; Pandey, A. V.

10.1101/664839 — biochemistry — Posted on 2019-10-22

1290 The place-cell representation of volumetric space in rats

Grieves, R. M.; Jedidi-Ayoub, S.; Mishchanchuk, K.; Liu, A.; Renaudineau, S.; Jeffery, K. J.

10.1101/698175 — animal behavior and cognition — Posted on 2019-10-22

1291 A cullin-RING ubiquitin ligase promotes thermotolerance as part of the Intracellular Pathogen Response in C. elegans

Panek, J.; Gang, S. S.; Reddy, K. C.; Luallen, R. J.; Fulzele, A.; Bennett, E. J.; Troemel, E. R.

10.1101/586834 — genetics — Posted on 2019-10-22

1292 Structurally informed evolutionary models improve phylogenetic reconstruction for emerging, seasonal, and pandemic influenza viruses

Qiu, X.; Bahl, J.

10.1101/228692 — evolutionary biology — Posted on 2019-10-22

1293 Soil type and interannual variation shape unique fungal pathogen communities on nearby populations of a California native bunchgrass

Farner, J. E.; Spear, E. R.; Mordecai, E. A.

10.1101/545632 — ecology — Posted on 2019-10-22

1294 The functional organization of excitation and inhibition in the dendritic arbors of retinal direction-selective ganglion cells

Murphy-Baum, B. L.; Jain, V.; deRosenroll, G.; Delsey, M.; Delaney, K.; Awatramani, G.

10.1101/718783 — neuroscience — Posted on 2019-10-22

1295 Fast gene set enrichment analysis

Korotkevich, G.; Sukhov, V.; Sergushichev, A.

10.1101/060012 — bioinformatics — Posted on 2019-10-22

1296 Interplay between axonal Wnt5-Vang and dendritic Wnt5-Drl/Ryk signaling controls glomerular patterning in the Drosophila antennal lobe

Hing, H.; Snyder, J.; Reger, N.; Fradkin, L. G.

10.1101/813246 — neuroscience — Posted on 2019-10-22

1297 Terminal neuron localization to the upper cortical plate is controlled by the transcription factor NEUROD2

Guzelsoy, G.; Akkaya, C.; Atak, D.; Dunn, C. D.; Kabakcioglu, A.; Ozlu, N.; Ince-Dunn, G.

10.1101/651273 — neuroscience — Posted on 2019-10-22

1298 Mechanisms of chromosome biorientation and bipolar spindle assembly analyzed by computational modeling

Edelmaier, C. J.; Lamson, A. R.; Gergely, Z. R.; Ansari, S.; Blackwell, R.; McIntosh, J. R.; Glaser, M. A.; Betterton, M. D.

10.1101/649913 — cell biology — Posted on 2019-10-22

1299 Bayesian Variable Selection with a Pleiotropic Loss Function in Mendelian Randomization

Gkatzionis, A.; Burgess, S.; Conti, D.; Newcombe, P. J.

10.1101/593863 — genetics — Posted on 2019-10-22

1300 Risk Factors Associated to Types of Gallstone Diagnosed at Ibnsina Gastroenterology center, Sudan

Shaddad, M.; Fadl, A. A.; Jervase, A.; Garelnabi, N. I.; Al Hakem, S.; Hussein, T. M.; Ahmed, M. H.; Almobark, A. O.

10.1101/640102 — epidemiology — Posted on 2019-10-22

1301 Long noncoding RNA AVAN promotes antiviral innate immunity by interacting with TRIM25 and enhancing the transcription of FOXO3a

Lai, C.; liu, l.; liu, q.; cheng, s.; wang, k.; zhao, l.; xia, m.; gu, h.; wang, c.; duan, y.; zhao, z.; zhang, l.; liu, z.; Luo, J.; Song, J.; Yang, P.; Chen, R.; Wang, X.

10.1101/623132 — immunology — Posted on 2019-10-22

1302 Updated Database and Evolutionary Dynamics of U12-Type Introns

Moyer, D.; Larue, G. E.; Hershberger, C. E.; Roy, S. W.; Padgett, R. A.

10.1101/620658 — genomics — Posted on 2019-10-22

1303 Live and let reproduce: Crown defoliation decreases reproduction and wood growth in a marginal European beech population.

Oddou-Muratorio, S.; Petit, C.; Journe, V.; Lingrand, M.; Magdalou, J.-A.; Hurson, C.; Garrigue, J.; Davi, H.; Magnanou, E.

10.1101/474874 — ecology — Posted on 2019-10-22

1304 A pipeline to create predictive functional networks: application to the tumor progression of hepatocellular carcinoma

Folschette, M.; Legagneux, V.; Poret, A.; Chebouba, L.; Guziolowski, C.; Theret, N.

10.1101/605519 — systems biology — Posted on 2019-10-22

1305 Parkinson’s disease phenotypes in patient specific brain organoids are improved by HP-β-CD treatment

Barmpa, K.; Rosety, I.; Smits, L. M.; Arias-Fuenzalida, J.; Walter, J.; Gomez-Giro, G.; Monzel, A. S.; Qing, X.; Cruciani, G.; Boussaad, I.; Jaeger, C.; Rakovic, A.; Berger, E.; Antony, P.; Klein, C.; Krüger, R.; Seibler, P.; Jarazo, J.; Schwamborn, J. C.; Bolognin, S.

10.1101/813089 — neuroscience — Posted on 2019-10-22

1306 Systemic immune response profiling with SYLARAS implicates a role for CD45R/B220+ CD8+ T cells in glioblastoma immunology

Baker, G. J.; Muhlich, J. L.; Palaniappan, S. K.; Moore, J. K.; Davis, S. H.; Santagata, S.; Sorger, P. K.

10.1101/555854 — immunology — Posted on 2019-10-22

1307 Performance in a novel environment subject to ghost competition.

Bisschop, K.; Mortier, F.; Bonte, D.; Etienne, R.

10.1101/515833 — evolutionary biology — Posted on 2019-10-22

1308 Parasite dispersal influences introgression rate: the case of dove wing and body lice

Dona, J.; Sweet, A.; Johnson, K.

10.1101/527226 — evolutionary biology — Posted on 2019-10-22

1309 Atypical neurogenesis in induced pluripotent stem cell (iPSC) from autistic individuals

Adhya, D.; Swarup, V.; Nagy, R.; Dutan Polit, L.; Shum, C.; Jozwik, K.; Nowosiad, P.; Lee, I.; Skuse, D.; Loth, E.; Howley, D.; Flinter, F. A.; McAlonan, G.; Mendez, M. A.; Horder, J.; Murphy, D.; Geschwind, D. H.; Price, J.; Carroll, J.; Srivastava, D. P.; Baron-Cohen, S.

10.1101/349415 — neuroscience — Posted on 2019-10-22

1310 PINK1 Regulates Dopamine and Lipids at Mitochondria to Maintain Synapses and Neuronal Function

Bus, C.; Geisler, S.; Feldkaemper, M.; Flores-Romero, H.; Schaedler, A.; Zittlau, K.; Zarini, M.; Uysal, B.; Casadei, N.; Fallier-Becker, P.; Schwarz, L.; Brouwers, J. F.; Koch, H.; Ugun-Klusek, A.; Maruszczak, K.; Vogt-Weisenhorn, D.; Wurst, W.; Schmidt, B.; Martens, G. J.; Bruegger, B.; Rapaport, D.; Garcia-Saez, A. J.; Macek, B.; Krueger, R.; Gasser, T.; Kahle, P. J.; Fitzgerald, J. C.

10.1101/814343 — neuroscience — Posted on 2019-10-22

1311 The X chromosome of the German cockroach, Blattella germanica, is homologous to a fly X chromosome despite 400 million years divergence

Meisel, R. P.; Delclos, P. J.; Wexler, J. R.

10.1101/279737 — genomics — Posted on 2019-10-22

1312 Hippocampal hub neurons maintain unique functional properties throughout their lifetime

Bocchio, M.; Gouny, C.; Angulo-Garcia, D.; Toulat, T.; Tressard, T.; Baude, A.; Cossart, R.

10.1101/813923 — neuroscience — Posted on 2019-10-22

1313 Identification and genetic validation of drug-comorbidity interactions in type 2 diabetes using data-driven disease trajectory analysis

Ichikawa, O.; Glicksberg, B. S.; Minsky, N.; Lee, H.-C.; Li, S. D.; Chen, R.; LI, L.; Dudley, J.

10.1101/814392 — bioinformatics — Posted on 2019-10-22

1314 Cryptococcus neoformans Chitin Synthase 3 (Chs3) Plays a Critical Role in Dampening Host Inflammatory Responses

Hole, C. R.; Lam, W. C.; Upadhya, R.; Lodge, J. K.

10.1101/814400 — immunology — Posted on 2019-10-22

1315 The Arp2/3 complex and the formin, Diaphanous, are both required to regulate the size of germline ring canals in the developing egg chamber

Thestrup, J.; Tipold, M.; Kindred, A.; Stark, K.; Curry, T.; Lewellyn, L.

10.1101/813873 — developmental biology — Posted on 2019-10-22

1316 Genetic engineering of hoxb8 immortalized hematopoietic progenitors: a potent tool to study macrophage tissue migration

Accarias, S.; Sanchez, T.; Labrousse, A.; Ben-Neji, M.; Boyance, A.; Poincloux, R.; Maridonneau-Parini, I.; Le Cabec, V.

10.1101/815043 — cell biology — Posted on 2019-10-22

1317 A highly homogeneous expansion microscopy polymer composed of tetrahedron-like monomers

Gao, R.; Yu, C.-C.; Gao, L.; Piatkevich, K. D.; Neve, R. L.; Upadhyayula, S.; Boyden, E. S.

10.1101/814111 — bioengineering — Posted on 2019-10-22

1318 Megabodies expand the nanobody toolkit for protein structure determination by single-particle cryo-EM

Uchanski, T.; Masiulis, S.; Fischer, B.; Kalichuk, V.; Wohlkonig, A.; Zogg, T.; Remaut, H.; Vranken, W.; Aricescu, A. R.; Pardon, E.; Steyaert, J.

10.1101/812230 — biochemistry — Posted on 2019-10-22

1319 Site-specific phosphorylation of histone H1.4 is associated with transcription activation.

Saha, A.; Seward, C.; Stubbs, L.; Mizzen, C. A.

10.1101/814129 — molecular biology — Posted on 2019-10-22

1320 A requirement for Potassium and Calcium Channels during the Endosomal Trafficking of Polyomavirus Virions

Dobson, S. J.; Mankouri, J.; Whitehouse, A.

10.1101/814681 — microbiology — Posted on 2019-10-22

1321 Biosynthesis of β-(1->5)-Galactofuranosyl Chains of Fungal-Type and O-Mannose-Type Galactomannans within the Invasive Pathogen Aspergillus fumigatus

Chihara, Y.; Tanaka, Y.; Izumi, M.; Hagiwara, D.; Watanabe, A.; Takegawa, K.; kamei, k.; Shibata, N.; Ohta, K.; Oka, T.

10.1101/814756 — microbiology — Posted on 2019-10-22

1322 Attacks on genetic privacy via uploads to genealogical databases

Edge, M. D.; Coop, G.

10.1101/798272 — genomics — Posted on 2019-10-22

1323 The Dynamics of Influenza A H3N2 Defective Viral Genomes from a Human Challenge Study

Martin, M. A.; Kaul, D.; Tan, G. S.; Woods, C. W.; Koelle, K.

10.1101/814673 — evolutionary biology — Posted on 2019-10-22

1324 Targeting Lysyl oxidase-like 2 in Idiopathic Pulmonary Fibrosis

Espindola, M. S.; Habiel, D. M.; Coelho, A. L.; Mikels-Vigdal, A.; Hogaboam, C. M.

10.1101/813907 — cell biology — Posted on 2019-10-22

1325 Composition dependent phase separation underlies directional flux through the nucleolus

Riback, J. A.; Zhu, L.; Ferrolino, M. C.; Tolbert, M.; Mitrea, D. M.; Sanders, D. W.; Wei, M.-T.; Kriwacki, R. W.; Brangwynne, C. P.

10.1101/809210 — biophysics — Posted on 2019-10-22

1326 Amino and PEG-Amino Graphene Oxide Grids Enrich and Protect Samples for High-resolution Single Particle Cryo-electron Microscopy

Wang, F.; Yu, Z.; Betegon, M.; Campbell, M.; Aksel, T.; Zhao, J.; Li, S.; Douglas, S. M.; Cheng, Y.; Agard, D.

10.1101/813972 — biophysics — Posted on 2019-10-22

1327 The PMK-3 (p38) Mitochondrial Retrograde Response Functions in Intestinal Cells to Extend Life via the ESCRT Machinery.

Radetskaya, O.; Lane, R. K.; Friedman, T.; Garrett, A.; Nguyen, M.; Borror, M. B.; Russell, J.; Rea, S. L.

10.1101/797308 — pathology — Posted on 2019-10-22

1328 Allelic polymorphism shapes community function in evolving Pseudomonas aeruginosa populations

Azimi, S.; Roberts, A. E.; Peng, S.; Weitz, J. S.; McNally, A.; Brown, S. P.; Diggle, S. P.

10.1101/644724 — microbiology — Posted on 2019-10-22

1329 A fibronectin mechanotransduction pathway translates segmentation clock oscillations into periodic somite formation

Gomes de Almeida, P.; Rifes, P.; Martins-Jesus, A. P.; Pinheiro, G. G.; Andrade, R. P.; Thorsteinsdottir, S.

10.1101/808121 — developmental biology — Posted on 2019-10-22

1330 fCite: a fractional citation tool to quantify an individual’s scientific research output

Kozlowski, L. P.

10.1101/771485 — scientific communication and education — Posted on 2019-10-22

1331 Assessing neurophysiological changes associated with combined transcranial direct current stimulation and cognitive emotional training for treatment-resistant depression

Nikolin, S.; Martin, D.; Loo, C.; Iacoviello, B.; Boonstra, T.

10.1101/688317 — neuroscience — Posted on 2019-10-22

1332 PGC-1α isoforms coordinate to balance hepatic metabolism and apoptosis in inflammatory environments

Leveille, M.; Besse-Patin, A.; Jouvet, N.; Gunes, A.; Jeromson, S.; Khan, N. P.; Sczelecki, S.; Baldwin, C.; Dumouchel, A.; Correia, J.; Jannig, P.; Boulais, J.; Ruas, J. L.; Estall, J. L.

10.1101/703678 — molecular biology — Posted on 2019-10-22

1333 Partner-independent fusion gene detection by multiplexed CRISPR/Cas9 enrichment and long-read Nanopore sequencing

Stangl, C.; de Blank, S.; Renkens, I.; Verbeek, T.; Espejo Valle-Inclan, J.; Chamorro Gonzalez, R.; Henssen, A.; Roosmalen, M.; Stam, R.; Voest, E.; Kloosterman, W.; van Haaften, G.; Monroe, G.

10.1101/807545 — genomics — Posted on 2019-10-22

1334 Characterisation of Quorum Sensing System and Its Role in Global Regulation in Hafnia alvei

Tan, J.-Y.; See-Too, W.-S.; Convey, P.; Chan, K.-G.

10.1101/812727 — genomics — Posted on 2019-10-22

1335 Constitutive UPRER activation sustains tumor cell differentiation

Doultsinos, D.; McMahon, M.; Voutetakis, K.; Obacz, J.; Pineau, R.; Le Reste, P.-J.; Obiedat, A.; Samal, J.; Patterson, J. B.; Zheng, Q.; Samali, A.; Pandit, A.; Tirosh, B.; Chatziioannou, A.; Chevet, E.; Avril, T.

10.1101/594630 — cancer biology — Posted on 2019-10-22

1336 Combinatorial quorum sensing in Pseudomonas aeruginosa allows for novel cheating strategies

Gurney, J.; Azimi, S.; Brown, S. P.; Diggle, S. P.

10.1101/313502 — microbiology — Posted on 2019-10-22

1337 Inhibition of ATR Reverses a Mitochondrial Respiratory Insufficiency

Borror, M. B.; Girotti, M.; Kar, A.; Cain, M.; Gao, X.; MacKay, V.; Herron, B.; Bhaskaran, S.; Becerra, S.; Novy, N.; Ventura, N.; Johnson, T. E.; Kennedy, B. L.; Rea, S. L.

10.1101/805390 — pathology — Posted on 2019-10-22

1338 All is not decline across global vertebrate populations

Daskalova, G. N.; Myers-Smith, I. H.; Godlee, J. L.

10.1101/272898 — ecology — Posted on 2019-10-22

1339 Proteome-scale discovery of protein interactions with residue-level resolution using sequence coevolution

Green, A. G.; Elhabashy, H.; Brock, K. P.; Maddamsetti, R.; Kohlbacher, O.; Marks, D. S.

10.1101/791293 — bioinformatics — Posted on 2019-10-22

1340 Dataset Decay: the problem of sequential analyses on open datasets

Thompson, W. H.; Wright, J.; Bissett, P. G.; Poldrack, R. A.

10.1101/801696 — bioinformatics — Posted on 2019-10-22

1341 A proteomics-based systems genetics approach reveals environment-specific loci modulating protein co-expression and drought-related traits in maize

Blein-Nicolas, M.; Negro, S. S.; Balliau, T.; Welcker, C.; Cabrera-Bosquet, L.; Nicolas, S. D.; Charcosset, A.; Zivy, M.

10.1101/636514 — systems biology — Posted on 2019-10-22

1342 An active inference approach to modeling structure learning: concept learning as an example case

Smith, R.; Schwartenbeck, P.; Parr, T.; Friston, K. J.

10.1101/633677 — neuroscience — Posted on 2019-10-22

1343 Holobiont Evolution: Mathematical Model with Vertical vs. Horizontal Microbiome Transmission

Roughgarden, J.

10.1101/465310 — evolutionary biology — Posted on 2019-10-22

1344 Identifying Drug Sensitivity Subnetworks with NETPHIX

Kim, Y.-A.; Sarto Basso, R.; Wojtowicz, D.; Hochbaum, D. S.; Vandin, F.; Przytycka, T. M.

10.1101/543876 — bioinformatics — Posted on 2019-10-22

1345 Championing Health Promotion through Group Patient and Family Education Activities in the Outpatient Department of a Tertiary Care Hospital

Abu-Shaheen, A.; Almahameed, M. I.; Kakish, S. F.

10.1101/813360 — scientific communication and education — Posted on 2019-10-21

1346 Robust, automated sleep scoring by a compact neural network with distributional shift correction

Barger, Z.; Frye, C. G.; Liu, D.; Dan, Y.; Bouchard, K. E.

10.1101/813345 — neuroscience — Posted on 2019-10-21

1347 Q203 containing fully intermittent oral regimens exhibited high sterilizing activity against Mycobacterium ulcerans in mice

Chauffour, A.; Robert, J.; Veziris, N.; Aubry, A.; Pethe, K.; Jarlier, V.

10.1101/813253 — microbiology — Posted on 2019-10-21

1348 The Elephant in the room: What can we learn from California regarding the use of sport hunting of pumas (Puma concolor) as a management tool?

Laundre, J.; Papouchis, C.

10.1101/813311 — ecology — Posted on 2019-10-21

1349 The role of swnR gene on the biosynthesis pathway of the swainsonine in Metarhizium anisopliae

Lu, H.; Sun, L.; Song, R.; Wang, J.; Liu, Y.; Zhang, Y.; Zhu, Y.; Guo, Q.; Mo, C.; Wang, B.; Zhao, B.

10.1101/813295 — molecular biology — Posted on 2019-10-21

1350 Genome-wide Transcriptomic Analysis of the Response of Botrytis cinerea to Wuyiencin

Shi, L.; Liu, B.; Wei, Q.; Ge, B.; Zhang, K.

10.1101/813329 — microbiology — Posted on 2019-10-21

1351 Transcriptomic profiling of PBDE-exposed HepaRG cells unveils critical lncRNA- PCG pairs involved in intermediary metabolism

Zhang, A.; Cui, J. Y.; Li, C. Y.; Kelly, E. J.; Sheppard, L.

10.1101/813337 — pharmacology and toxicology — Posted on 2019-10-21

1352 Heritability and relationship of oxytocin receptor gene variants with social behavior and central oxytocin in colony-reared adult female rhesus macaques

De Leon, D.; Young, L.; Walum, H.; McCormack, K. M.; LaPrairie, J. L.; Lindell, S. G.; Firesryche, A.; Johnson, Z.; Wilson, M. E.; Barr, C. S.; Sanchez, M. M.

10.1101/813287 — neuroscience — Posted on 2019-10-21

1353 Effects of initial microbial biomass abundance on respiration during pine litter decomposition

Albright, M.; Runde, A.; Lopez, D.; Gans, J.; Sevanto, S.; Woolf, D.; Dunbar, J.

10.1101/813303 — microbiology — Posted on 2019-10-21

1354 THAP11F80L cobalamin disorder-associated mutation reveals normal and pathogenic THAP11 functions in gene expression and cell proliferation

Dehaene, H.; Praz, V.; Lhote, P.; Lopes, M.; Herr, W.

10.1101/813352 — cell biology — Posted on 2019-10-21

1355 Pinealectomy increases thermogenesis and decreases lipogenesis

Kim, M. K.; Lee, S. M.; Jung, J.; Kim, Y. J.; Moon, K. C.; Seo, J. H.; Ha, E.

10.1101/813261 — biochemistry — Posted on 2019-10-21

1356 Impact of intensive care unit admission during handover on mortality: a propensity matched cohort study

Midega, T. D.; Filho, N. C. V. L.; Nassar, A. P.; Alencar, R. M.; Neto, A. C.; Ferraz, L. R.; Correa, T. D.

10.1101/813279 — scientific communication and education — Posted on 2019-10-21

1357 Network analyses implicate a role for PHYTOCHROME-mediated light signaling in the regulation of cuticle development in plant leaves

Qiao, P.; Bourgault, R.; Mohammadi, M.; Smith, L. G.; Gore, M. A.; Molina, I.; Scanlon, M. J.

10.1101/812107 — plant biology — Posted on 2019-10-21

1358 Ascorbate deficiency does not limit non-photochemical quenching in Chlamydomonas reinhardtii

Vidal-Meireles, A.; Toth, D.; Kovacs, L.; Neupert, J.; Toth, S. Z.

10.1101/813766 — plant biology — Posted on 2019-10-21

1359 Roq1 confers resistance to Xanthomonas, Pseudomonas syringae and Ralstonia solanacearum in tomato

Thomas, N. C.; Hendrich, C. G.; Gill, U. S.; Allen, C.; Hutton, S. F.; Schultink, A.

10.1101/813758 — plant biology — Posted on 2019-10-21

1360 Identification of chloroplast envelope proteins with critical importance for cold acclimation

Trentmann, O.; Mühlhaus, T.; Zimmer, D.; Sommer, F. K.; Schroda, M.; Haferkamp, I.; Keller, I.; Pommerrenig, B.; Neuhaus, H. E.

10.1101/813725 — plant biology — Posted on 2019-10-21

1361 Dementia is Associated with a Syndrome of Global Neuropsychiatric Disturbance

Royall, D. R.; Palmer, R. F.

10.1101/813485 — neuroscience — Posted on 2019-10-21

1362 The brain of a nocturnal migratory insect, the Australian Bogong moth

Adden, A.; Wibrand, S.; Pfeiffer, K.; Warrant, E.; Heinze, S.

10.1101/810895 — neuroscience — Posted on 2019-10-21

1363 Multi-modality neuroimaging brain-age in UK Biobank: relationship to biomedical, lifestyle and cognitive factors

Cole, J. H.

10.1101/812982 — neuroscience — Posted on 2019-10-21

1364 Gene copy normalization of the 16S rRNA gene cannot outweigh the methodological biases of sequencing

Starke, R.; Morais, D.

10.1101/813477 — microbiology — Posted on 2019-10-21

1365 Insights into the desert living skin microbiome: geography, soil depth, and crust type affect biocrust microbial communities and networks in Mojave Desert, USA

Pombubpa, N.; Pietrasiak, N.; De Ley, P.; Stajich, J. E.

10.1101/810002 — microbiology — Posted on 2019-10-21

1366 Spatial co-fragmentation pattern of cell-free DNA recapitulates in vivo chromatin organization and identifies tissues-of-origin

Liu, Y.; Liu, T.-Y.; Weinberg, D. E.; White, B. W.; De La Torre, C. J.; Tan, C. L.; Schmitt, A. D.; Selvaraj, S.; Tran, V.; Laurent, L. C.; Cabel, L.; Bidard, F.-C.; Putcha, G.; Haque, I. S.

10.1101/564773 — genomics — Posted on 2019-10-21

1367 Integrating enhancer RNA signatures with diverse omics data identifies characteristics of transcription initiation in pancreatic islets

Varshney, A.; Kyono, Y.; Elangovan, V. R.; Wang, C.; Erdos, M. R.; Narisu, N.; Albanus, R. D. O.; Orchard, P.; Stitzel, M. L.; Collins, F. S.; Kitzman, J. O.; Parker, S. C. J.

10.1101/812552 — genomics — Posted on 2019-10-21

1368 Genomic signature of ongoing alkaline adaptation in a Schizothoracine fish (Cyprinidae) inhabiting soda lake on the Tibetan Plateau

Tong, C.; Li, M.; Tang, Y.; Zhao, K.

10.1101/813501 — genomics — Posted on 2019-10-21

1369 Nuclear organisation and replication timing are coupled through RIF1-PP1 interaction

Gnan, S.; Flyamer, I. M.; Klein, K. N.; Castelli, E.; Turner, J. L.; Weber, P.; Maiser, A.; Enervald, E.; Cardoso, C. M.; Bickmore, W. A.; Gilbert, D. M.; Buonomo, S.

10.1101/812156 — genomics — Posted on 2019-10-21

1370 High-depth resequencing reveals hybrid population and insecticide resistance characteristics of fall armyworm (Spodoptera frugiperda) invading China

Zhang, L.; Liu, B.; Zheng, W.; Liu, C.; Zhang, D.; Zhao, S.; Xu, P.; Wilson, K.; Withers, A.; Jones, C. M.; Smith, J. A.; Chipabika, G.; Kachigamba, D. L.; Nam, K.; d'Alencon, E.; Liu, B.; Liang, X.; Jin, M.; Wu, C.; Chakrabarty, S.; Yang, X.; Jiang, Y.; Liu, J.; Liu, X.; Quan, W.; Wang, G.; Fan, W.; Qian, W.; Wu, K.; Xiao, Y.

10.1101/813154 — genomics — Posted on 2019-10-21

1371 Systematic identification of A-to-I editing associated regulators from multiple human cancers

Gu, T.; Fu, A. Q.; Bolt, M. J.; Zhao, X.

10.1101/812610 — bioinformatics — Posted on 2019-10-21

1372 A mechanism coordinating root elongation, endodermal differentiation, redox homeostasis and response

Fu, J.; Liu, J.-M.; Gao, X.; Zhang, X.; Bai, J.; Hao, Y.; Cui, H.

10.1101/813774 — plant biology — Posted on 2019-10-21

1373 Quantitative properties of a feedback circuit predict frequency-dependent pattern separation

Braganza, O.; Mueller-Komorowska, D.; Kelly, T.; Beck, H.

10.1101/813188 — neuroscience — Posted on 2019-10-21

1374 Voltage-sensitive dye imaging reveals inhibitory modulation of ongoing cortical activity

Newton, T. H.; Abdellah, M.; Chevtchenko, G.; Muller, E. B.; Markram, H.

10.1101/812008 — neuroscience — Posted on 2019-10-21

1375 Striatal iron content is linked to reduced fronto-striatal brain function under working memory load

Rodrigue, K. M.; Daugherty, A. M.; Foster, C. M.; Kennedy, K. M.

10.1101/812602 — neuroscience — Posted on 2019-10-21

1376 Identification of a Central Neural Circuit that Regulates Anxiety-induced Bone Loss

Yang, F.; Liu, Y.; Chen, S.; Dai, Z.; Yang, D.; Gao, D.; Shao, J.; Wang, Y.; Wang, T.; Zhang, Z.; Zhang, L.; Lu, W. W.; Tu, J.; Li, Y.; Wang, L.

10.1101/812875 — neuroscience — Posted on 2019-10-21

1377 Identification of drug modifiers for RYR1 related myopathy using a multi-species discovery pipeline

Volpatti, J.; Endo, Y.; Groom, L.; Brennan, S.; Noche, R.; Zuercher, B.; Roy, P.; Dirksen, R. T.; Dowling, J. J.

10.1101/813097 — genetics — Posted on 2019-10-21

1378 Increased expression of genetically-regulated FLT3 implicated in Tourette Syndrome

Liao, C.; Vuokila, V.; Catoire, H.; Akcimen, F.; Ross, J. P.; Bourassa, C.; Dion, P. A.; Meijer, I. A.; Rouleau, G. A.

10.1101/812420 — genetics — Posted on 2019-10-21

1379 Prophase removal of chromosome-associated RNAs facilitates anaphase chromosome segregation

Sharp, J. A.; Wang, W.; Blower, M. D.

10.1101/813527 — cell biology — Posted on 2019-10-21

1380 Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics

Vorobev, A.; Dupouy, M.; Carradec, Q.; Delmont, T.; Annamale, A.; Wincker, P.; Pelletier, E.

10.1101/812974 — genomics — Posted on 2019-10-21

1381 Uniparental mitochondrial inheritance in Cryptococcus is controlled by the pheromone and pheromone receptor mating-type locus

Sun, S.; Fu, C.; Ianiri, G.; Heitman, J.

10.1101/813998 — genetics — Posted on 2019-10-21

1382 The origin and diversification of pteropods predate past perturbations in the Earth’s carbon cycle

Peijnenburg, K. T. C. A.; Janssen, A. W.; Wall-Palmer, D.; Goetze, E.; Maas, A.; Todd, J. A.; Marletaz, F.

10.1101/813386 — evolutionary biology — Posted on 2019-10-21

1383 High-throughput, temporal and dose dependent, effect of vitamins and minerals on chondrogenesis

Dennis, J. E.; Splawn, T.; Kean, T. J.

10.1101/811877 — cell biology — Posted on 2019-10-21

1384 A novel method to detect intracellular metabolite alterations in MCF-7 cells by doxorubicin induced cell death

Kumar, A.; Patel, S.; Bhatkar, D.; Sharma, N. K.

10.1101/812255 — cancer biology — Posted on 2019-10-21

1385 Distinct CASK domains control cardiac sodium channel membrane expression and focal adhesion anchoring

Beuriot, A.; Eichel, C. A.; Dilanian, G.; Louault, F.; Melgari, D.; Doisne, N.; Coulombe, A.; Hatem, S. N.; Balse, E.

10.1101/813030 — physiology — Posted on 2019-10-21

1386 Efficacy of chronic ultrasound neurostimulation on behaviors and distributed brain metabolism in depressive-like mice

Legrand, M.; Galineau, L.; Novell, A.; Planchez, B.; Brizard, B.; Leman, S.; Tauber, C.; Escoffre, J. M.; Lefevre, A.; Gosset, P.; El-Hage, W.; Emond, P.; Belzung, C.; Bouakaz, A.

10.1101/813006 — neuroscience — Posted on 2019-10-21

1387 Dysregulation of temporal dynamics of synchronous neural activity in adolescents on autism spectrum

Malaia, E.; Ahn, S.; Rubchinsky, L. L.

10.1101/813519 — neuroscience — Posted on 2019-10-21

1388 Synaptonemal complex-deficient Drosophila melanogaster females exhibit rare DSB repair events, recurrent copy number variation, and an increased rate of de novo transposable element movement

Miller, D. E.

10.1101/814186 — genetics — Posted on 2019-10-21

1389 RNAfamProb Plus NeoFold: Estimations of Posterior Probabilities on RNA Structural Alignment and RNA Secondary Structures with Incorporating Homologous-RNA Sequences

Tagashira, M.; Asai, K.

10.1101/812891 — bioinformatics — Posted on 2019-10-21

1390 A novel toolkit for the efficient delivery of Cas9/sgRNA complexes to chromosomes in cells

Indikova, I.; Indik, S.

10.1101/812925 — bioengineering — Posted on 2019-10-21

1391 Biochemical, Biophysical, and Functional Analyses of Two Isoforms of the SnRK2 Inhibitor AtSCS

Tarnowski, K.; Klimecka, M.; Ciesielski, A.; Goch, G.; Kulik, A.; Fedak, H.; Poznanski, J.; Lichocka, M.; Pierechod, M.; Engh, R. A.; Dadlez, M.; Dobrowolska, G.; Bucholc, M.

10.1101/813717 — plant biology — Posted on 2019-10-21

1392 A cucumber green mottle mosaic virus vector for virus-induced gene silencing in cucurbit plants

Liu, M.; Liang, Z.; Aranda, M. A.; Hong, N.; Liu, L.; Baoshan, K.; Gu, Q.

10.1101/813741 — pathology — Posted on 2019-10-21

1393 The interplay of top-down focal attention and the cortical tracking of speech

Lesenfants, D.; Francart, T.

10.1101/813147 — neuroscience — Posted on 2019-10-21

1394 qDRIP: Quantitative differential RNA:DNA hybrid immunoprecipitation sequencing

Crossley, M. P.; Bocek, M. J.; Hamperl, S.; Swigut, T.; Cimprich, K. A.

10.1101/811208 — molecular biology — Posted on 2019-10-21

1395 Interactions of a bacterial RND transporter with a transmembrane small protein in a lipid environment

Luisi, B. F.; Du, D.; Neuberger, A.; Orr, M.; Newman, C.; Hsu, P.-C.; Samsudin, F.; Szewczak-Harris, A.; Ramos, L. M.; Debela, M.; Khalid, S.; Storz, G.

10.1101/813394 — microbiology — Posted on 2019-10-21

1396 Yolk-Sac-Derived Macrophages Progressively Expand in the Mouse Kidney with Age

Ide, S.; Yahara, Y.; Kobayashi, Y.; Strausser, S. A.; Watwe, A.; Pivratsky, J. R.; Crowley, S. D.; Shinohara, M. L.; Alman, B. A.; Souma, T.

10.1101/811927 — immunology — Posted on 2019-10-21

1397 A functional analysis of the Drosophila gene hindsight: evidence for positive regulation of EGFR signaling

Kim, M.; Du, O. Y.; Whitney, R. J.; Wilk, R.; Hu, J.; Krause, H.; Kavaler, J.; Reed, B. H.

10.1101/814137 — developmental biology — Posted on 2019-10-21

1398 A microtranslatome coordinately regulates sodium and potassium currents in the heart

Eichel, C. A.; Rios-Perez, E. B.; Liu, F.; Jameson, M. B.; Jones, D. K.; Knickelbine, J. J.; Robertson, G. A.

10.1101/813592 — cell biology — Posted on 2019-10-21

1399 InterPep2: Global Peptide-Protein Docking with Structural Templates

Johansson-Akhe, I.; Mirabello, C.; Wallner, B.

10.1101/813238 — bioinformatics — Posted on 2019-10-21

1400 Brain-wide electrical spatiotemporal dynamics encode reward anticipation

Vu, M.-A. T.; David, L.; Thomas, G.; Vagwala, M.; Burrus, C.; Gallagher, N.; Wang, J.; Blount, C.; Hughes, D. N.; Adamson, E.; Ndubuizu, N.; Kim, I. H.; Soderling, S.; Mague, S. D.; Adcock, R. A.; Dzirasa, K.

10.1101/813113 — neuroscience — Posted on 2019-10-21

1401 Amygdalostriatal coupling underpins positive but not negative coloring of ambiguous affect

Kim, M. J.; Mattek, A. M.; Shin, J.

10.1101/811505 — neuroscience — Posted on 2019-10-21

1402 Genomic evidence for a hybrid origin of the yeast opportunistic pathogen Candida albicans

Mixao, V.; Gabaldon, T.

10.1101/813436 — microbiology — Posted on 2019-10-21

1403 Genome Sequence of Segmented Filamentous Bacteria Present in the Human Intestine

Jonsson, H.; Hugerth, L. W.; Sundh, J.; Andersson, A. F.

10.1101/813196 — microbiology — Posted on 2019-10-21

1404 Inhibition of Sting rescues lupus disease by the regulation of Lyn-mediated dendritic cell differentiation

Thim-uam, A.; Prabakaran, T.; Tansakul, M.; Makjaroen, J.; Wongkongkathep, P.; Chantaravisoot, N.; Saethang, T.; Leelahavanichkul, A.; Benjachat, T.; Paludan, S. R.; Pisitkun, T.; Pisitkun, P.

10.1101/810192 — immunology — Posted on 2019-10-21

1405 Adaptation by copy number variation increases insecticide resistance in fall armyworms

NAM, K.; Gimenez, S.; Hilliou, F.; Blanco, C. A.; Haenniger, S.; Bretaudeau, A.; Legeai, F.; Negre, N.; d'Alencon, E.

10.1101/812958 — evolutionary biology — Posted on 2019-10-21

1406 Pan-cancer single cell RNA-seq uncovers recurring programs of cellular heterogeneity

Kinker, G. S.; Greenwald, A. C.; Tal, R.; Orlova, Z.; Cuoco, M. S.; McFarland, J. M.; Warren, A.; Rodman, C.; Roth, J. A.; Bender, S. A.; Kumar, B.; Rocco, J. W.; Fernandes, P. A.; Mader, C. C.; Keren-Shaul, H.; Plotnikov, A.; Barr, H.; Tsherniak, A.; Rozenblatt-Rosen, O.; Krizhanovsky, V.; Puram, S. V.; Regev, A.; Tirosh, I.

10.1101/807552 — cancer biology — Posted on 2019-10-21

1407 GPI-anchored SKU5/SKS are maternally required for integument development in Arabidopsis

Zhou, K.; Fiume, E.; De Vos, D.; Magnani, E.

10.1101/813733 — plant biology — Posted on 2019-10-21

1408 PhyB induces intron retention and uORF-mediated translational inhibition of PIF3

Dong, J.; Chen, H.; Deng, X. W.; Irish, V. F.; Wei, N.

10.1101/813840 — plant biology — Posted on 2019-10-21

1409 Scale-resolved analysis of brain functional connectivity networks with spectral entropy

Nicolini, C.; Forcellini, G.; Minati, L.; Bifone, A.

10.1101/813162 — neuroscience — Posted on 2019-10-21

1410 Tumors attenuating the mitochondrial activity in T cells escape from PD-1 blockade therapy

Honjo, T.; Kumar, A.; Chamoto, K.; Chowdhury, P. S.

10.1101/813584 — immunology — Posted on 2019-10-21

1411 Exploring the relationship between polymorphisms of leptin and IGF-1 genes with milk yield in indicine and taurine crossbred cows

Dar, M. R.; Singh, M.; Thakur, S.; Verma, A.

10.1101/814004 — genetics — Posted on 2019-10-21

1412 Metaxin 3 is a Highly Conserved Vertebrate Protein Homologous to Mitochondrial Import Proteins and GSTs

Adolph, K. W.

10.1101/813451 — evolutionary biology — Posted on 2019-10-21

1413 Effect of recombinant phycocyanin on photosynthetic system in Chlamydomonas reinhardtii

Zhang, F.; Cong, X.; Wang, Z.; Guo, Y.; Hou, L.; Li, R.; Shang, M.; Wei, X.; Yangzong, Z.; Zang, X.

10.1101/813816 — molecular biology — Posted on 2019-10-21

1414 BTB-TAZ domain protein MdBT2 modulates malate accumulation by targeting a bHLH transcription factor for degradation in response to nitrate

Zhang, Q.-Y.; Gu, K.-D.; Cheng, L.; Wang, J.-H.; Yu, J.-Q.; Wang, X.-F.; You, C.-X.; Hu, D.-G.; Hao, Y.-J.

10.1101/813832 — molecular biology — Posted on 2019-10-21

1415 Establishment of the trans-resveratrol-induced mouse pulmonary fibrosis model and its comparison with the bleomycin-induced model

Chen, Y.; Zong, C.; Sheng, C.; Chang, H.; Wang, S.; Zhao, H.; Liu, S.; Zhang, Q.; Dong, R.; Ge, D.; Yu, X.; Li, L.

10.1101/812883 — pharmacology and toxicology — Posted on 2019-10-21

1416 p38-mitogen activated kinases mediate a developmental regulatory response to amino acid depletion and associated oxidative stress in mouse blastocyst embryos

Bora, P.; Thamodaran, V.; Susor, A.; Bruce, A. W.

10.1101/807305 — developmental biology — Posted on 2019-10-21

1417 Rapidly cycling stem cells regenerate the intestine independent of Lgr5high cells

Sheng, X.; Lin, Z.; Lv, C.; Shao, C.; Bi, X.; Deng, M.; Xu, J.; F. Guerrero-Juarez, C.; Li, M.; Wu, X.; Zhao, R.; Liu, X.; Wang, Q.; Nie, Q.; Cui, W.; Gao, S.; Zhang, H.; Liu, Z.; Cong, Y.; Plikus, M. V.; Lengner, C.; Andersen, B.; Ren, F.; Yu, Z.

10.1101/813402 — cell biology — Posted on 2019-10-21

1418 Promoter proximal pausing limits Yki-induced tumorous growth in Drosophila

Nagarkar, S.; Wasnik, R.; Govada, P.; Cohen, S. M.; SHASHIDHARA, L. S.

10.1101/813022 — cancer biology — Posted on 2019-10-21

1419 Effective Tyrosine Kinase Inhibitors result in the intracellular accumulation of EGFR and allows response prediction in patients

de Wit, M.; Gao, Y.; Mercieca, D.; de Heer, I.; Valkenburg, B.; van Royen, M.; Aerts, J.; Sillevis Smitt, P.; French, P.

10.1101/798314 — cancer biology — Posted on 2019-10-21

1420 Quantitative Visualization of Hypoxia and Proliferation Gradients Within Histological Tissue Sections

Zaidi, M.; Fu, F.; Cojocari, D.; McKee, T. D.; Wouters, B.

10.1101/807875 — bioinformatics — Posted on 2019-10-21

1421 A new method for rapid genome classification, clustering, visualization, and novel taxa discovery from metagenome

Wang, Z.; Ho, H.; Egan, R.; Yao, S.; Kang, D.; Froula, J.; Sevim, V.; Schulz, F.; Shay, J. E.; Macklin, D.; McCue, K.; Orsini, R.; Barich, D. J.; Sedlacek, C. J.; Li, W.; Morgan-Kiss, R.; Woyke, T.; Slonczewski, J. L.

10.1101/812917 — bioinformatics — Posted on 2019-10-21

1422 mTORC1-Plin3 pathway is essential to activate lipophagy and protects against hepatosteatosis.

Garcia-Macia, M.; Santos-Ledo, A.; Leslie, J.; Paish, H.; Watson, A.; Borthwick, L.; Mann, J.; Oakley, F.; Korolchuk, V. I.; Mann, D. A.

10.1101/812990 — cell biology — Posted on 2019-10-21

1423 Decomposing Simon task BOLD activation using a drift-diffusion model framework

McIntosh, J. R.; Sajda, P.

10.1101/809947 — neuroscience — Posted on 2019-10-21

1424 Lost in Translation: population genomics of porcini mushrooms (Boletus edulis) challenges use of ITS for DNA barcoding in Fungi

Tremble, K. S.; Suz, L. M.; Dentinger, B.

10.1101/811216 — evolutionary biology — Posted on 2019-10-21

1425 Combined Atomic Force Microscope and Volumetric Light Sheet System for Mechanobiology

Nelsen, E.; Hobson, C. M.; Kern, M. E.; Hsiao, J. P.; O'Brien, E. T.; Wantanabe, T.; Condon, B. M.; Boyce, M.; Grinstein, S.; Hahn, K. M.; Falvo, M. R.; Superfine, R.

10.1101/812396 — biophysics — Posted on 2019-10-21

1426 Evaluating spatiotemporal integration of shape cues

Burchfield, T.; Greene, E.

10.1101/809103 — neuroscience — Posted on 2019-10-21

1427 Thalamic-medial temporal lobe connectivity underpins familiarity memory

Kafkas, A.; Mayes, A.; Montaldi, D.

10.1101/665687 — neuroscience — Posted on 2019-10-21

1428 Revealing α oscillatory activity using voltage-sensitive dye imaging in monkey V1

Chemla, S.; Roux, S.; Reynaud, A.; Chavane, F.; VanRullen, R.

10.1101/810325 — neuroscience — Posted on 2019-10-21

1429 Quantifying The Individual Impact Of Artificial Barriers In Freshwaters: A Standardized And Absolute Index Of Genetic Connectivity

Prunier, J. G.; Poesy, C.; Dubut, V.; Veyssiere, C.; Loot, G.; Poulet, N.; Blanchet, S.

10.1101/809111 — ecology — Posted on 2019-10-21

1430 Personalized Network Modeling of the Pan-Cancer Patient and Cell Line Interactome

Bhattacharyya, R.; Ha, M. J.; Liu, Q.; Akbani, R.; Liang, H.; Baladandayuthapani, V.

10.1101/806596 — bioinformatics — Posted on 2019-10-21

1431 fCite: a fractional citation tool to quantify an individual’s scientific research output

Kozlowski, L. P.

10.1101/771485 — scientific communication and education — Posted on 2019-10-21

1432 First fossil skull of an anteater (Vermilingua, Myrmecophagidae) from northern South America, a taxonomic reassessment of Neotamandua and a discussion of the myrmecophagid diversification

Jimenez-Lara, K.; Gonzalez, J.

10.1101/793307 — paleontology — Posted on 2019-10-21

1433 Extended-spectrum beta-lactamase (ESBL)-producing and non-ESBL-producing Escherichia coli isolates causing bacteremia in the Netherlands (2014 - 2016) differ in clonal distribution, antimicrobial resistance gene and virulence gene content

van Hout, D.; Verschuuren, T. D.; Bruijning-Verhagen, P. C. J.; Bosch, T.; Schürch, A. C.; Willems, R. J. L.; Bonten, M. J. M.; Kluytmans, J. A. J. W.

10.1101/723734 — microbiology — Posted on 2019-10-21

1434 Selection-based model of prokaryote pangenomes

Domingo-Sananes, M. R.; McInerney, J.

10.1101/782573 — microbiology — Posted on 2019-10-21

1435 Carryover effects of temperature and pCO2 across multiple Olympia oyster populations

Spencer, L. H.; Venkataraman, Y. R.; Crim, R.; Ryan, S.; Horwith, M. J.; Roberts, S. B.

10.1101/616375 — physiology — Posted on 2019-10-21

1436 An open resource of structural variation for medical and population genetics

Collins, R. L.; Brand, H.; Karczewski, K. J.; Zhao, X.; Alföldi, J.; Francioli, L. C.; Khera, A. V.; Lowther, C.; Gauthier, L. D.; Wang, H.; Watts, N. A.; Solomonson, M.; O'Donnell-Luria, A.; Baumann, A.; Munshi, R.; Walker, M.; Whelan, C.; Huang, Y.; Brookings, T.; Sharpe, T.; Stone, M. R.; Valkanas, E.; Fu, J.; Tiao, G.; Laricchia, K. M.; Ruano-Rubio, V.; Stevens, C.; Gupta, N.; Margolin, L.; Genome Aggregation Database Consortium, ; Taylor, K. D.; Lin, H. J.; Rich, S. S.; Post, W.; Chen, Y.-D. I.; Rotter, J. I.; Nusbaum, C.; Philippakis, A.; Lander, E.; Gabriel, S.; Neale, B. M.; Kathire

10.1101/578674 — genomics — Posted on 2019-10-21

1437 Neanderthal-Denisovan ancestors interbred with a distantly-related hominin

Rogers, A. R.; Harris, N. S.; Achenbach, A. A.

10.1101/657247 — evolutionary biology — Posted on 2019-10-21

1438 Short-range interactions govern cellular dynamics in microbial multi-genotype systems

Dal Co, A.; van Vliet, S.; Kiviet, D. J.; Schlegel, S.; Ackermann, M.

10.1101/530584 — systems biology — Posted on 2019-10-21

1439 Low frequency oscillatory activity of the subthalamic nucleus is a predictive biomarker of compulsive-like cocaine seeking.

Degoulet, M.; Tiran-Cappello, A.; Baunez, C.; Pelloux, Y.

10.1101/451203 — neuroscience — Posted on 2019-10-21

1440 Cellular heterogeneity in pressure and growth emerges from tissue topology and geometry

Long, Y.; Cheddadi, I.; Mirabet, V.; Mosca, G.; Dumond, M.; Traas, J.; Godin, C.; Boudaoud, A.

10.1101/334664 — biophysics — Posted on 2019-10-21

1441 Spatial transcriptomics identifies novel markers of vulnerable and resistant dopamine neurons

Aguila, J.; Cheng, S.; Kee, N.; Cao, M.; Deng, Q.; Hedlund, E.

10.1101/334417 — neuroscience — Posted on 2019-10-21

1442 Geographic variation in adult and embryonic desiccation tolerance in a terrestrial-breeding frog

Rudin-Bitterli, T. S.; Evans, J. P.; Mitchell, N. J.

10.1101/314351 — evolutionary biology — Posted on 2019-10-21

1443 Importance of parental genome balance in the generation of novel yet heritable epigenetic and transcriptional states during doubled haploid breeding

Price, J.; Antunez-Sanchez, J.; Hussain, N.; Wibowo, A.; Papareddy, R.; Becker, C.; Teakle, G.; Barker, G.; Weigel, D.; Gutierrez-Marcos, J.

10.1101/812347 — plant biology — Posted on 2019-10-21

1444 Mapping Mesoscale Axonal Projections in the Mouse Brain Using A 3D Convolutional Network

Friedmann, D.; Pun, A.; Adams, E. L.; Lui, J. H.; Kebschull, J. M.; Grutzner, S. M.; Castagnola, C.; Tessier-Lavigne, M.; Luo, L.

10.1101/812644 — neuroscience — Posted on 2019-10-21

1445 Identifying robust strategies for assisted migration given risks and uncertainties in a stochastic metacommunity

Backus, G. A.; Baskett, M. L.

10.1101/811497 — ecology — Posted on 2019-10-21

1446 Ectopic HOTTIP Expression Induces Non-canonical Transactivation Pathways to Promote Growth and Invasiveness in Pancreatic Ductal Adenocarcinoma

Wong, C. H.; Li, C. H.; He, Q.; Chan, S. L.; Tong, J. H.-M.; To, K.-F.; Chen, Y.

10.1101/812800 — cancer biology — Posted on 2019-10-21

1447 Mechanotransduction activity facilitates hair cell toxicity caused by the heavy metal cadmium

Stawicki, T. M.; Schmid, C.; Alampi, I.; Briggs, J.; Tarcza, K.

10.1101/812438 — neuroscience — Posted on 2019-10-21

1448 Characterisation of Quorum Sensing System and Its Role in Global Regulation in Hafnia alvei

Tan, J.-Y.; See-Too, W.-S.; Convey, P.; Chan, K.-G.

10.1101/812727 — genomics — Posted on 2019-10-21

1449 New analysis framework incorporating mixed mutual information and scalable Bayesian networks for multimodal high dimensional genomic and epigenomic cancer data

Wang, X.; Branciamore, S.; Gogoshin, G.; Rodin, A. S.

10.1101/812446 — genomics — Posted on 2019-10-21

1450 A multi-tier species delimitation approach resolves conflicts in delineating the primitively segmented spider genus Heptathela endemic to Japanese islands

Xu, X.; Kuntner, M.; Bond, J. E.; Ono, H.; Liu, F.; Yu, L.; Li, D.

10.1101/812214 — evolutionary biology — Posted on 2019-10-21

1451 Linking influenza virus evolution within and between human hosts

Xue, K. S.; Bloom, J. D.

10.1101/812016 — evolutionary biology — Posted on 2019-10-21

1452 Trophic variation within a piscivorous lake trout morph from Great Bear Lake, Canada: The initial step toward ecological specialization?

Chavarie, L. B.; Howland, K.; Harris, L.; Gallagher, C.; Hansen, M.; Tonn, W.; Muir, A.; Krueger, C.

10.1101/811851 — ecology — Posted on 2019-10-21

1453 Contrasting dates of rainforest fragmentation in Africa inferred from trees with different dispersal abilities

Pineiro, R.; Hardy, O. J.; Tovar, C.; Gopalakrishnan, S.; Garrett Vieira, F.; Gilbert, M. T. P.

10.1101/811463 — evolutionary biology — Posted on 2019-10-21

1454 Reference-free resolution of long-read metagenomic data

Khachatryan, L.; Anvar, S. Y.; Vossen, R. H. A. M.; Laros, J. F. J.

10.1101/811760 — bioinformatics — Posted on 2019-10-21

1455 Interactions of encoding and decoding problems to understand motor control

wen, s.; Yin, A.; Zheng, L.; Perich, M.; Miller, L.; itti, L.

10.1101/811356 — neuroscience — Posted on 2019-10-21

1456 Limited overlap in RNA virome composition among rabbits and their ectoparasites reveals barriers to virus transmission

Mahar, J. E.; Shi, M.; Hall, R.; Strive, T.; Holmes, E. C.

10.1101/812081 — microbiology — Posted on 2019-10-21

1457 Drivers of plant traits and forest functional composition in coastal plant communities of the Atlantic Forest

Lourenco, J.; Newman, E. A.; Ventura, J. A.; Milanez, C. R. D.; Thomaz, L. D.; Wandekoken, D. T.; Enquist, B. J.

10.1101/812339 — ecology — Posted on 2019-10-21

1458 The γH2AX Peak in the S Phase After UV Irradiation Corresponds to the sites of DNA Replication and not DNA Damage

Dhuppar, S.; Roy, S.; Mazumder, A.

10.1101/810689 — cell biology — Posted on 2019-10-21

1459 Tetrahymena Poc5 is a transient basal body component that is important for basal body maturation

Heydeck, W.; Bayless, B. A.; Stemm-Wolf, A. J.; O'Toole, E. T.; Ozzello, C.; Nguyen, M.; Winey, M.

10.1101/812503 — cell biology — Posted on 2019-10-21

1460 Addressing age related hearing loss through engineering accessible and affordable hearing technology

Sinha, S.; Irani, U. D.; Manchaiah, V.; Bhamla, M. S.

10.1101/811828 — bioengineering — Posted on 2019-10-21

1461 Fully-automated cell-type identification with specific markers extracted from single-cell transcriptomic data

Ianevski, A.; Giri, A. K.; Aittokallio, T.

10.1101/812131 — systems biology — Posted on 2019-10-21

1462 Dynamic encoding of social threat and spatial context in the hypothalamus

Krzywkowski, P.; Penna, B.; Gross, C. T.

10.1101/811380 — neuroscience — Posted on 2019-10-21

1463 Model-based and model-free analyses of the neural correlates of tongue movements

Soros, P.; Schaefer, S.; Witt, K.

10.1101/812263 — neuroscience — Posted on 2019-10-21

1464 Heterogeneous synaptic weighting improves neural coding in the presence of common noise

Sachdeva, P. S.; Livezey, J. A.; DeWeese, M. R.

10.1101/811364 — neuroscience — Posted on 2019-10-21

1465 Population coding of strategic variables during foraging in freely-moving macaques

Shahidi, N.; Schrater, P.; Wright, A.; Pitkow, X.; Dragoi, V.

10.1101/811992 — neuroscience — Posted on 2019-10-21

1466 Correlates of non-random patterns of capsule switching in pneumococcus

Joshi, S.; Al-Mamun, M. A.; Weinberger, D. M.

10.1101/811406 — microbiology — Posted on 2019-10-21

1467 Some Statistical Consideration in Transcriptome-Wide Association Studies

Xue, H.; Pan, W.; Alzheimer's Disease Neuroimaging Initiative,

10.1101/812677 — genetics — Posted on 2019-10-21

1468 The Establishment of CDK9/ RNA PolII/H3K4me3/DNA Methylation Feedback Promotes HOTAIR Expression by RNA Elongation Enhancement in Cancer

Wong, C. H.; Li, C. H.; He, Q.; Tong, J. H. M.; To, K.-F.; Chen, Y.

10.1101/812776 — cancer biology — Posted on 2019-10-21

1469 Combined Atomic Force Microscope and Volumetric Light Sheet System for Mechanobiology

Nelsen, E.; Hobson, C. M.; Kern, M. E.; Hsiao, J. P.; O'Brien, E. T.; Wantanabe, T.; Condon, B. M.; Boyce, M.; Grinstein, S.; Hahn, K. M.; Falvo, M. R.; Superfin, R.

10.1101/812396 — biophysics — Posted on 2019-10-21

1470 CellProfiler: A fit tool for image analysis in droplet microfluidics

Bartkova, S.; Vendelin, M.; Sanka, I.; Pata, P.; Scheler, O.

10.1101/811869 — bioinformatics — Posted on 2019-10-21

1471 Directed evolution improves the catalytic efficiency of TEV protease

Sanchez Lopez, M. I.; Ting, A. Y.

10.1101/811570 — synthetic biology — Posted on 2019-10-21

1472 Opposing transcriptomic gradients explain orthogonal maps in human visual areas

Zhen, Z.; Gomez, J.; Weiner, K. S.

10.1101/812560 — neuroscience — Posted on 2019-10-21

1473 Novel tau filament fold in corticobasal degeneration, a four-repeat tauopathy

Zhang, W.; Tarutani, A.; Newell, K. L.; Murzin, A. G.; Matsubara, T.; Falcon, B.; Vidal, R.; Garringer, H. J.; Shi, Y.; Ikeuchi, T.; Murayama, S.; Ghetti, B.; Hasegawa, M.; Goedert, M.; Scheres, S.

10.1101/811703 — neuroscience — Posted on 2019-10-21

1474 Cross-species machine learning improves diagnostic classification of human psychiatric disorders

Zhan, Y.; Wei, J.; Liang, J.; Xu, X.; He, R.; Robbins, T. W.; Wang, Z.

10.1101/812693 — neuroscience — Posted on 2019-10-21

1475 Genome-wide association study of gastrointestinal disorders reinforces the link between the digestive tract and the nervous system

Wu, Y.; Murray, G. K.; Byrne, E. M.; Sidorenko, J.; Visscher, P. M.; Wray, N. R.

10.1101/811737 — genomics — Posted on 2019-10-21

1476 Genome Report: De novo assembly of a high-quality reference genome for the Horned Lark (Eremophila alpestris)

Mason, N. A.; Cadena, C. D.; Pulgarin, P.; Lovette, I. J.

10.1101/811745 — genomics — Posted on 2019-10-21

1477 Optimal spatial prioritization of control resources for elimination of invasive species under demographic uncertainty

Pepin, K.; Smyser, T.; Davis, A.; Miller, R.; McKee, S.; VerCauteren, K.; Slootmaker, C.

10.1101/812305 — ecology — Posted on 2019-10-21

1478 Errors associated with compound specific δ15N analysis of amino acids in preserved fish samples purified by high pressure liquid chromatography

Swalethorp, R.; Aluwihare, L.; Thompson, A. R.; Ohman, M. D.; Landry, M. R.

10.1101/812065 — ecology — Posted on 2019-10-21

1479 Integrating multiple dimensions of biodiversity to inform global parrot conservation

Burgio, K. R.; Davis, K. E.; Dreiss, L. M.; Cisneros, L. M.; Klingbeil, B. T.; Presley, S. J.; Willig, M. R.

10.1101/812321 — ecology — Posted on 2019-10-21

1480 Lineage-Specific Epigenomic and Genomic Activation of the Oncogene HNF4A Promotes Gastrointestinal Adenocarcinomas

Pan, J.; Silva, T. C.; Gull, N.; Yang, Q.; Plummer, J.; Chen, S.; Daigo, K.; Hamakubo, T.; Gery, S.; Ding, L.-W.; Jiang, Y.-Y.; Hu, S.-Y.; Xu, L.-Y.; Li, E.-M.; Ding, Y.; Klempner, S. J.; Berman, B. P.; Koeffler, H. P.; Lin, D.-C.

10.1101/812149 — cancer biology — Posted on 2019-10-21

1481 The kinase inhibitor AT9283 selectively kills colorectal cancer cells with hyperactive NRF2

Torrente, L.; Maan, G.; Casares, L.; Jackson, A.; Honda, T.; Wells, G.; Kulesskiy, E.; Saarela, J.; Dinkova-Kostova, A. T.; de la Vega, L.

10.1101/812909 — cancer biology — Posted on 2019-10-21

1482 Rapid multicomponent bioluminescence imaging via substrate unmixing

Rathbun, C. M.; Ionkina, A. A.; Yao, Z.; Jones, K. A.; Porterfield, W. B.; Prescher, J. A.

10.1101/811026 — bioengineering — Posted on 2019-10-21

1483 Length-dependent accumulation of double-stranded RNAs in plastids affects RNA interference efficiency in the Colorado potato beetle

He, W.; Xu, W.; Xu, L.; Fu, K.; Guo, W.; Bock, R.; Zhang, J.

10.1101/812750 — bioengineering — Posted on 2019-10-21

1484 Inferring low-dimensional latent descriptions of animal vocalizations

Goffinet, J.; Mooney, R.; Pearson, J.

10.1101/811661 — animal behavior and cognition — Posted on 2019-10-21

1485 Absolute quantification of transcription factors reveals principles of gene regulation in erythropoiesis

Gillespie, M. A.; Palii, C. G.; Sanchez-Taltavull, D.; Shannon, P. T.; Longabaugh, W. J. R.; Downes, D.; Sivaraman, K.; Hughes, J. R.; Price, N. D.; Perkins, T. J.; Ranish, J. A.; Brand, M.

10.1101/812123 — systems biology — Posted on 2019-10-21

1486 Optimal Design of Single-Cell Experiments within Temporally Fluctuating Environments

Fox, Z. R.; Neuert, G.; Munsky, B.

10.1101/812479 — systems biology — Posted on 2019-10-21

1487 Phenylpropionc acid produced by gut microbiota alleviates acetaminophen-induced hepatotoxicity

Cho, S.; Won, K.-J.; Yang, X.; Leone, V.; Chang, E. B.; Chung, E.; Park, J.-S.; Lee, H.; Jeong, H.

10.1101/811984 — pharmacology and toxicology — Posted on 2019-10-21

1488 Single Cell Transcriptional Profiling of Phox2b-Expressing Geniculate Ganglion Neurons

Anderson, C.; Larson, E. D.

10.1101/812578 — neuroscience — Posted on 2019-10-21

1489 Dual stochasticity of neurons and synapses provides a biologically plausible learning

Teramae, J.-n.

10.1101/811646 — neuroscience — Posted on 2019-10-21

1490 Neuropeptide Y expression defines a novel class of GABAergic projection neurons in the inferior colliculus

Silveira, M. A.; Anair, J. D.; Beebe, N. L.; Schofield, B. R.; Roberts, M. T.

10.1101/812388 — neuroscience — Posted on 2019-10-21

1491 Music predictability and liking enhance pupil dilation and promote motor learning in non-musicians

Bianco, R.; Gold, B.; Johnson, A. P.; Penhune, V.

10.1101/812834 — neuroscience — Posted on 2019-10-21

1492 Connectivity characterization of the mouse basolateral amygdalar complex

Hintiryan, H.; Bowman, I.; Johnson, D. L.; Korobkova, L.; Zhu, M.; Khanjani, N.; Gou, L.; Gao, L.; Yamashita, S.; Bienkowski, M. S.; Garcia, L.; Foster, N. N.; Benavidez, N. L.; Song, M. Y.; Lo, D.; Cotter, K.; Becerra, M.; Aquino, S.; Cao, C.; Cabeen, R.; Stanis, J.; Fayzullina, M.; Ustrell, S.; Boesen, T.; Zhang, Z.-G.; Fanselow, M. S.; Golshani, P.; Hahn, J. D.; Wickersham, I. R.; Ascoli, G. A.; Zhang, L. I.; Dong, H.-W.

10.1101/807743 — neuroscience — Posted on 2019-10-21

1493 Physical activity improves sarcopenia in a murine model by enhancing the proliferative potential of muscle stem cells, oxidative capacity of mitochondrial enzymes and expression of Sestrins

Anwar, M.; Mallick, S. R.; Paliwal, D.; Sekhar, S.; Panda, S. K.; Dey, S.; Dey, A. B.

10.1101/811638 — molecular biology — Posted on 2019-10-21

1494 Deconstructing the individual steps of vertebrate translation initiation

Giess, A.; Torres Cleuren, Y. N.; Tjeldnes, H.; Krause, M.; Bizuayehu, T. T.; Hiensch, S.; Okon, A.; Wagner, C. R.; Valen, E.

10.1101/811810 — molecular biology — Posted on 2019-10-21

1495 Codon usage bias creates a ramp of hydrogen bonding at the 5′-end in prokaryotic ORFeomes

Villada, J. C.; Duran, M. F.; Lee, P. K. H.

10.1101/811612 — microbiology — Posted on 2019-10-21

1496 Streptococcus equi subsps. zooepidemicus associated with sudden death of swine in North America

Costa, M. O.; Lage, B. L.

10.1101/812636 — microbiology — Posted on 2019-10-21

1497 Towards an information theory of quantitative genetics

Galas, D. J.; Kunert-Graf, J. M.; Uechi, L.; Sakhanenko, N. A.

10.1101/811950 — genetics — Posted on 2019-10-21

1498 Selective disruption of synaptic BMP signaling by a Smad mutation adjacent to the highly conserved H2 helix

Nguyen, T. H.; Han, T. H.; Newfeld, S.; Serpe, M.

10.1101/811109 — genetics — Posted on 2019-10-21

1499 Centromere scission drives chromosome shuffling and reproductive isolation

Yadav, V.; Sun, S.; Coelho, M. A.; Heitman, J.

10.1101/809848 — genetics — Posted on 2019-10-21

1500 Tubulin recycling limits cold tolerance

Li, G.; Moore, J.

10.1101/812867 — cell biology — Posted on 2019-10-21

1501 multiSLIDE: a query-driven heatmap visualization tool for multi-omics data

Ghosh, S.; Datta, A.; Choi, H.

10.1101/812271 — bioinformatics — Posted on 2019-10-21

1502 PWAS: Proteome-Wide Association Study

Brandes, N.; Linial, N.; Linial, M.

10.1101/812289 — bioinformatics — Posted on 2019-10-21

1503 AutoTuner: High fidelity, robust, and rapid parameter selection for metabolomics data processing

McLean, C.; Kujawinski, E. B.

10.1101/812370 — bioinformatics — Posted on 2019-10-21

1504 Juvenile rank acquisition influences fitness independent of adult rank

Strauss, E. D.; Shizuka, D.; Holekamp, K. E.

10.1101/812362 — animal behavior and cognition — Posted on 2019-10-21

1505 Neto-α controls synapse organization and homeostasis at the Drosophila neuromuscular junction

Han, T. H.; Vicidomini, R.; Ramos, C. I.; Wang, Q.; Nguyen, P.; Jarnik, M.; Li, M.; Stawarski, M.; Hernandez, R.; Macleod, G.; Serpe, M.

10.1101/812040 — neuroscience — Posted on 2019-10-21

1506 Changes in cross-frequency coupling following closed-loop auditory stimulation in non-rapid eye movement sleep

Krugliakova, E.; Volk, C.; Jaramillo, V.; Sousouri, G.; Huber, R.

10.1101/810861 — neuroscience — Posted on 2019-10-21

1507 A presynaptic spectrin network controls active zone assembly and neurotransmitter release

Wang, Q.; Friend, L.; Vicidomini, R.; Han, T. H.; Nguyen, P.; Ting, C.-Y.; Serpe, M.

10.1101/812032 — neuroscience — Posted on 2019-10-21

1508 Nonlinear convergence preserves information

Gutierrez, G. J.; Rieke, F.; Shea-Brown, E.

10.1101/811539 — neuroscience — Posted on 2019-10-21

1509 Migraine aura, a predictor of near-death experiences in a crowdsourced study

Kondziella, D.; Olsen, M. H.; Lemale, C.; Dreier, J. P.

10.1101/811885 — neuroscience — Posted on 2019-10-21

1510 The genetic architecture of human brainstem structures and their involvement in common brain disorders

Elvsashagen, T.; Bahrami, S.; van der Meer, D.; Agartz, I.; Alnaes, D.; Barch, D. M.; Baur-Streubel, R.; Bertolino, A.; Beyer, M. K.; Blasi, G.; Borgwardt, S.; Boye, B.; Buitelaar, J.; Boen, E.; Celius, E. G.; Cervenka, S.; Conzelmann, A.; Coynel, D.; Di Carlo, P.; Djurovic, S.; Eisenacher, S.; Espeseth, T.; Fatouros-Bergman, H.; Flyckt, L.; Franke, B.; Frei, O.; Gelao, B.; Harbo, H. F.; Hartman, C. A.; Haberg, A.; Heslenfeld, D.; Hoekstra, P.; Hogestol, E. A.; Jonassen, R.; Jonsson, E. G.; Kirsch, P.; Kloszewska, I.; Lagerberg, T. V.; Landro, N. I.; Le Hellard, S.; Lesch, K.-P.; Maglanoc, L.

10.1101/811711 — neuroscience — Posted on 2019-10-21

1511 Unravelling the Stability and Capsid Dynamics of the Three Virions of Brome Mosaic Virus Assembled Autonomously In Vivo

Chakravarthy, A.; Beren, C.; Garmann, R.; Rao, A. L. N.

10.1101/811653 — molecular biology — Posted on 2019-10-21

1512 Rad53 controls DNA unwinding after helicase-polymerase uncoupling at DNA replication forks

Devbhandari, S.; Remus, D.

10.1101/811141 — molecular biology — Posted on 2019-10-21

1513 Toxic PR poly-dipeptides encoded by the C9orf72 repeat expansion target Kapβ2 and dysregulate phase separation of low-complexity domains

Nanaura, H.; Kawamukai, H.; Fujiwara, A.; Uehara, T.; Nakanishi, M.; Shiota, T.; Hibino, M.; Aiba, Y.; Wiriyasermkul, P.; Kikuchi, S.; Nagata, R.; Matsubayashi, M.; Nagamori, S.; Shoji, O.; Ishimori, K.; Matsumura, H.; Sugie, K.; Saio, T.; Yoshizawa, T.; Mori, E.

10.1101/812099 — molecular biology — Posted on 2019-10-21

1514 Evolutionary relationships among Massospora spp. (Entomophthorales), obligate pathogens of cicadas

Macias, A. M.; Geiser, D. M.; Stajich, J. E.; Lukasik, P.; Veloso, C.; Bublitz, D. C.; Berger, M. C.; Boyce, G. R.; Hodge, K.; Kasson, M. T.

10.1101/811836 — microbiology — Posted on 2019-10-21

1515 The spatial heterogeneity of the gut limits bacteriophage predation leading to the coexistence of antagonist populations of bacteria and their viruses

Lourenco, M.; Chaffringeon, L.; Lamy-Besnier, Q.; Campagne, P.; Eberl, C.; Berard, M.; Stecher, B.; Debarbieux, L.; De Sordi, L.

10.1101/810705 — microbiology — Posted on 2019-10-21

1516 Translation inhibition from a distance: the small RNA SgrS interferes with a ribosomal protein S1-dependent enhancer

Azam, M. S.; Vanderpool, C.

10.1101/808485 — microbiology — Posted on 2019-10-21

1517 Cryopreservation impairs cytotoxicity and migration of NK cells in 3-D tissue: Implications for cancer immunotherapy

Mark, C.; Czerwinski, T.; Roessner, S.; Mainka, A.; Hörsch, F.; Heublein, L.; Winterl, A.; Sanokowski, S.; Richter, S.; Bauer, N.; Schuler, G.; Fabry, B.; Voskens, C. J.

10.1101/812172 — immunology — Posted on 2019-10-21

1518 Skeletal muscle reprogramming by breast cancer regardless of treatment history or tumor molecular subtype

Wilson, H. E.; Stanton, D. A.; Montgomery, C.; Infante, A. M.; Taylor, M.; Hazard-Jenkins, H.; Pugacheva, E. N.; Pistilli, E. E.

10.1101/810952 — cancer biology — Posted on 2019-10-21

1519 Bayesian Evaluation of Temporal Signal in Measurably Evolving Populations

Duchene, S.; Lemey, p.; Stadler, T.; Ho, S. Y.; Duchene, D. A.; Dhanasekaran, V.; Baele, G.

10.1101/810697 — bioinformatics — Posted on 2019-10-21

1520 Wikidata as a FAIR knowledge graph for the life sciences

Waagmeester, A.; Stupp, G.; Burgstaller-Muehlbacher, S.; Good, B. M.; Griffith, M.; Griffith, O.; Hanspers, K.; Hermjakob, H.; Hybiske, K.; Keating, S. M.; Manske, M.; Mayers, M.; Mitraka, E.; Pico, A. R.; Putman, T.; Riutta, A.; Queralt-Rosinach, N.; Schriml, L. M.; Slenter, D.; Tsueng, G.; Tu, R.; Willighagen, E.; Wu, C.; Su, A. I.

10.1101/799684 — bioinformatics — Posted on 2019-10-21

1521 Spatial perception and memory have distinct activation profiles in human visual cortex

Favila, S. E.; Kuhl, B. A.; Winawer, J.

10.1101/811331 — neuroscience — Posted on 2019-10-21

1522 Mapping the brain-wide network effects by optogenetic activation of the corpus callosum

Chen, Y.; Sobczak, F.; Pais, P.; Schwarz, C.; Koretsky, A. P.; Yu, X.

10.1101/810366 — neuroscience — Posted on 2019-10-21

1523 Spontaneous Traveling Cortical Waves Gate Perception in Awake Behaving Primates

Davis, Z. W.; Muller, L.; Martinez-Trujillo, J.; Sejnowski, T.; Reynolds, J.

10.1101/811471 — neuroscience — Posted on 2019-10-21

Wagner, I. C.; Ruetgen, M.; Lamm, C.

10.1101/811935 — neuroscience — Posted on 2019-10-21

1525 DNA methylation in the APOE gene: its link with Alzheimer’s and cardiovascular health

Mur, J.; McCartney, D. L.; Walker, R. M.; Campbell, A.; Bermingham, M. L.; Morris, S. W.; Porteous, D. J.; McIntosh, A. M.; Deary, I. J.; Evans, K. L.; Marioni, R. E.

10.1101/811224 — neuroscience — Posted on 2019-10-21

1526 Wnt signaling activates gene expression in the absence of the C. elegans DREAM repressor complex in somatic cells

Cherian, J. R.; Petrella, L. N.

10.1101/811414 — genetics — Posted on 2019-10-21

1527 Joint phylogenetic estimation of geographic movements and biome shifts during the global diversification of Viburnum

Landis, M. J.; Eaton, D. A. R.; Clement, W. L.; Park, B.; Spriggs, E. L.; Sweeney, P. W.; Edwards, E. J.; Donoghue, M. J.

10.1101/811067 — evolutionary biology — Posted on 2019-10-21

1528 Same father, same face: deep-learning reveals paternally-derived signalling of kinship in a wild primate

Charpentier, M. J.; Harte, M.; Poirotte, C.; Meric de Bellefon, J.; Laubi, B.; Kappeler, P. M.; Renoult, J. P.

10.1101/810820 — evolutionary biology — Posted on 2019-10-21

1529 Lost in Translation: population genomics of porcini mushrooms (Boletus edulis) challenges use of ITS for DNA barcoding in Fungi

Tremble, K. S.; Suz, L. M.; Dentinger, B.

10.1101/811216 — evolutionary biology — Posted on 2019-10-21

1530 MINDFUL: A Method to Identify Novel and Diverse Signals with Fast, Unsupervised Learning

Parulekar, M.; Narlikar, L.

10.1101/805820 — bioinformatics — Posted on 2019-10-21

1531 FuzzyVariantsExplorer: Graded exploration of genomic data and fuzzy queries

Falda, M.

10.1101/811695 — bioinformatics — Posted on 2019-10-21

1532 Mechanophenotyping of 3D Multicellular Clusters using Displacement Arrays of Rendered Tractions

Leggett, S. E.; Patel, M.; Valentin, T. M.; Gamboa, L.; Khoo, A. S.; Williams, E. K.; Franck, C.; Wong, I. Y.

10.1101/809871 — bioengineering — Posted on 2019-10-21

1533 Identifying Sialylation Linkages at the Glycopeptide Level by Glycosyltransferase Labeling Assisted Mass Spectrometry (GLAMS)

Zhu, H.; Wang, S.; Liu, D.; Ding, L.; Chen, C.; Liu, Y.; Wu, Z.; Bollag, R.; Liu, K.; Yin, J.; Ma, C.; Li, L.; Wang, P. G.

10.1101/811554 — biochemistry — Posted on 2019-10-21

1534 A virus-encoded protein suppresses methylation of the viral genome through its interaction with AGO4 in the Cajal body

Wang, L.; Ding, Y.; He, L.; Zhang, G.; Zhu, J.-K.; Lozano-Duran, R.

10.1101/811091 — plant biology — Posted on 2019-10-21

1535 Inhibitory signaling in mammalian olfactory transduction potentially mediated by Gαo

Corey, E. A.; Ukhanov, K.; Bobkov, Y. V.; McIntyre, J. C.; Martens, J. R.; Ache, B. W.

10.1101/811125 — neuroscience — Posted on 2019-10-21

1536 Growth Rules for the Repair of Asynchronous Irregular Neuronal Networks after Peripheral Lesions

Sinha, A.; Metzner, C.; Davey, N.; Adams, R.; Schmuker, M.; Steuber, V.

10.1101/810846 — neuroscience — Posted on 2019-10-21

1537 Orexin signaling in GABAergic lateral habenula neurons modulates aggressive behavior

Flanigan, M.; Aleyasin, H.; Li, L.; Burnett, C. J.; Chan, K.; LeClair, K.; Lucas, E.; Matikainen-Ankney, B.; Janssen, W.; Takahashi, A.; Menard, C.; Pfau, M.; Golden, S.; Bouchard, S.; Calipari, E. S.; Nestler, E. J.; DiLeone, R.; Yamanaka, A.; Huntley, G.; Clem, R.; Russo, S.

10.1101/811265 — neuroscience — Posted on 2019-10-21

1538 Ketamine anesthesia induces gain enhancement via recurrent excitation in granular input layers of the auditory cortex

Deane, K. E.; Brunk, M. G. K.; Curran, A. W.; Zempeltzi, M. M.; Ma, J.; Lin, X.; Abela, F.; Aksit, S.; Deliano, M.; Ohl, F. W.; Happel, M. F. K.

10.1101/810978 — neuroscience — Posted on 2019-10-21

1539 Poor concordance of floxed sequence recombination in single neural stem cells: Implications for cell autonomous studies

Dause, T. J.; Kirby, E. D.

10.1101/811455 — neuroscience — Posted on 2019-10-21

1540 Decomposing Simon task BOLD activation using a drift-diffusion model framework

McIntosh, J. R.; Sajda, P.

10.1101/809947 — neuroscience — Posted on 2019-10-21

1541 A Chromatin Accessibility Atlas of the Developing Human Telencephalon

Markenscoff-Papadimitriou, E.; Whalen, S.; Przytycki, P.; Thomas, R.; Binyameen, F.; Nowakowski, T. J.; Sanders, S. J.; State, M. W.; Pollard, K. S.; Rubenstein, J. L.

10.1101/811620 — neuroscience — Posted on 2019-10-21

1542 Multiple ribonuclease A family members cleave transfer RNAs in response to stress

Akiyama, Y.; Lyons, S. M.; Fay, M. M.; Abe, T.; Anderson, P.; Ivanov, P.

10.1101/811174 — molecular biology — Posted on 2019-10-21

1543 DNA Break-Induced Epigenetic Drift as a Cause of Mammalian Aging

Hayano, M.; Yang, J.-H.; Bonkowski, M. S.; Amorim, J. A.; Ross, J. M.; Coppotelli, G.; Griffin, P. T.; Chew, Y. C.; Guo, W.; Yang, X.; Vera, D. L.; Salfati, E. L.; Das, A.; Thakur, S.; Kane, A. E.; Mitchell, S. J.; Mohri, Y.; Nishimura, E. K.; Schaevitz, L.; Garg, N.; Balta, A.-M.; Rego, M. A.; Gregory-Ksander, M.; Jakobs, T. C.; Zhong, L.; Wakimoto, H.; Mostoslavsky, R.; Wagers, A. J.; Tsubota, K.; Bonasera, S. J.; Palmeira, C. M.; Seidman, J. G.; Seidman, C. E.; Wolf, N. S.; Kreiling, J. A.; Sedivy, J. M.; Murphy, G. F.; Oberdoerffer, P.; Ksander, B. R.; Rajman, L. A.; Sinclair, D. A.

10.1101/808659 — molecular biology — Posted on 2019-10-21

1544 CASC3 promotes transcriptome-wide activation of nonsense-mediated decay by the exon junction complex

Gerbracht, J. V.; Boehm, V.; Britto-Borges, T.; Kallabis, S.; Wiederstein, J. L.; Ciriello, S.; Aschemeier, D. U.; Krueger, M.; Frese, C. K.; Altmueller, J.; Dieterich, C.; Gehring, N. H.

10.1101/811018 — molecular biology — Posted on 2019-10-21

1545 In vitro Efficacy of Novel Glucan Synthase Inhibitor, Ibrexafungerp (SCY-078), Against Multidrug- and Pan-resistant Candida auris Isolates from the Outbreak in New York

Zhu, Y. C.; Barat, S. A.; Borroto-Esoda, K.; Angulo, D.; Chaturvedi, S.; Chaturvedi, V.

10.1101/811182 — microbiology — Posted on 2019-10-21

1546 IL-15 re-programming compensates for NK cell mitochondrial dysfunction in HIV-1 infection

Moreno Cubero, E.; Balint, S.; Alrubayyi, A.; Ogbe, A.; Matthews, R.; Burns, F.; Rowland Jones, S.; Borrow, P.; Schurich, A.; Dustin, M.; Peppa, D.

10.1101/811117 — immunology — Posted on 2019-10-21

1547 What is in a lichen? A metagenomic approach to reconstruct the holo-genome of Umbilicaria pustulata

Greshake Tzovaras, B.; Segers, F. H. I. D.; Bicker, A.; Dal Grande, F.; Otte, J.; Anvar, S. Y.; Hankeln, T.; Schmitt, I.; Ebersberger, I.

10.1101/810986 — genomics — Posted on 2019-10-21

1548 Statistical Analysis of Spatial Expression Pattern for Spatially Resolved Transcriptomic Studies

Sun, S.; Zhu, J.; Zhou, X.

10.1101/810903 — genomics — Posted on 2019-10-21

1549 Experimental and field data support habitat expansion of the allopolyploid Arabidopsis kamchatica owing to parental legacy of heavy metal hyperaccumulation

Paape, T.; Akiyama, R.; Cereghetti, T.; Onda, Y.; Hirao, A.; Kenta, T.; Shimizu, K.

10.1101/810853 — evolutionary biology — Posted on 2019-10-21

1550 A Complex Regulatory Landscape Involved In The Development Of External Genitals

Amandio, A. R.; Lopez-Delisle, L.; Bolt, C. C.; Mascrez, B.; Duboule, D.

10.1101/810788 — developmental biology — Posted on 2019-10-21

1551 The molecular landscape and microenvironment of salivary duct carcinoma reveal new therapeutic opportunities

Alame, M.; Cornillot, E.; Cacheux, V.; Tosato, G.; Four, M.; De Oliveira, L.; Gofflot, S.; Delvenne, P.; Turtoi, E.; Cabello-Aguilar, S.; Nishiyama, M.; Turtoi, A.; Costes Martineau, V.; Colinge, J.

10.1101/810028 — cancer biology — Posted on 2019-10-21

1552 EGFR Oncogenes Expressed In Glioblastoma Are Activated As Covalent Dimers And Paradoxically Stimulated By Erlotinib

Buck, E.; O'Connor, M.; Romashko, D.; Salomatov, A.; Ishiyama, N.; Epstein, D.; Mayweg, A.; Flohr, A.; Iacone, R.; Nicolaides, T.; Markovic, S.; Zhang, J.

10.1101/810721 — cancer biology — Posted on 2019-10-21

1553 GraphAligner: Rapid and Versatile Sequence-to-Graph Alignment

Rautiainen, M.; Marschall, T.

10.1101/810812 — bioinformatics — Posted on 2019-10-21

1554 From behavior to circuit modeling of light-seeking navigation in zebrafish larvae

Karpenko, S.; Wolf, S.; Lafaye, J.; Le Goc, G.; Panier, T.; Bormuth, V.; Candelier, R.; Debregeas, G.

10.1101/810960 — animal behavior and cognition — Posted on 2019-10-21

1555 Academic criteria for promotion and tenure in faculties of biomedical sciences: a cross-sectional analysis of 146 universities

Rice, D. B.; Raffoul, H.; Ioannidis, J. P.; Moher, D.

10.1101/802850 — scientific communication and education — Posted on 2019-10-21

1556 Sex classification using long-range temporal dependence of resting-state functional MRI time series

Dhamala, E.; Jamison, K. W.; Sabuncu, M. R.; Kuceyeski, A.

10.1101/809954 — neuroscience — Posted on 2019-10-21

1557 Prefrontal cortex exhibits multi-dimensional dynamic encoding during decision-making

Aoi, M. C.; Mante, V.; Pillow, J. W.

10.1101/808584 — neuroscience — Posted on 2019-10-21

1558 Population coding and network dynamics during OFF responses in auditory cortex

Bondanelli, G.; Deneux, T.; Bathellier, B.; Ostojic, S.

10.1101/810655 — neuroscience — Posted on 2019-10-21

1559 Correlating STED and synchrotron XRF nano-imaging unveils the co-segregation of metals and cytoskeleton proteins in dendrites

Domart, F.; Cloetens, P.; Roudeau, S.; Carmona, A.; Verdier, E.; Choquet, D.; Ortega, R.

10.1101/810754 — neuroscience — Posted on 2019-10-21

1560 Exploring the overlap between rheumatoid arthritis susceptibility loci and long non-coding RNA annotations

Ding, J.; Shi, C.; Bowes, J.; Eyre, S.; Orozco, G.

10.1101/804880 — genetics — Posted on 2019-10-21

1561 Novelty and emergent patterns in sperm: morphological diversity and evolution of spermatozoa and sperm conjugation in ground beetles (Coleoptera: Carabidae)

Gomez, R. A.; Maddison, D. R.

10.1101/809863 — evolutionary biology — Posted on 2019-10-21

1562 Phenomenal: An automatic open source library for 3D shoot architecture reconstruction and analysis for image-based plant phenotyping

Artzet, S.; Chen, T.-W.; Chopard, J.; Brichet, N.; Mielewczik, M.; Cohen-Boulakia, S.; Cabrera-Bosquet, L.; Tardieu, F.; Fournier, C.; Pradal, C.

10.1101/805739 — plant biology — Posted on 2019-10-21

1563 Transmigration of Trypanosoma cruzi trypomastigotes through 3D cultures resembling a physiological environment

Rodriguez, M. E.; Rizzi, M.; Caeiro, L. D.; Masip, Y. E.; Perrone, A.; Sanchez, D. O.; Bua, J.; Tekiel, V.

10.1101/810614 — microbiology — Posted on 2019-10-21

1564 Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation

Bawn, M.; Thilliez, G.; Wheeler, N.; Kirkwood, M.; Petrovska, L.; Dallman, T. J.; Hall, N.; Kingsley, R. A.

10.1101/804674 — genomics — Posted on 2019-10-21

1565 Landscape of Dysregulated Placental RNA Editing Associated with Preeclampsia

Yang, X.; Yang, J.; Liang, X.; Chen, Q.; Jiang, S.; Liu, H.; Gao, Y.; Ren, Z.; Yu, Y.; Zhong, M.; Yang, X.

10.1101/797365 — genomics — Posted on 2019-10-21

1566 New genome assemblies reveal patterns of domestication and adaptation across Brettanomyces (Dekkera) species

Roach, M. J.; Borneman, A. R.

10.1101/805721 — genomics — Posted on 2019-10-21

1567 Octopaminergic neurons have multiple targets in Drosophila larval mushroom body calyx and regulate behavioral odor discrimination

Wong, J. Y. H.; McLachlan, A. D.; Wan, B. A.; O'Kane, C. J.; Montagnese, M.; Zhang, S. W.; Masuda-Nakagawa, L. M.

10.1101/295659 — neuroscience — Posted on 2019-10-21

1568 Pupil responses to pitch deviants reflect predictability of melodic sequences.

Bianco, R.; Ptasczynski, L. E.; Omigie, D.

10.1101/693382 — neuroscience — Posted on 2019-10-21

1569 Genome sequencing of Musa acuminata Dwarf Cavendish reveals a duplication of a large segment of chromosome 2

Busche, M.; Pucker, B.; Viehoever, P.; Weisshaar, B.; Stracke, R.

10.1101/691923 — genomics — Posted on 2019-10-21

1570 Map3k2-Regulated Intestinal Stromal Cells (MRISC) Define a Distinct Sub-cryptic Stem Cell Niche for Damage Induced Wnt Agonist R-spondin1 Production

Wu, N.; Sun, H.; Zhao, X.; Chen, L.; Qi, Y.; Han, Y.; Liu, X.-n.; Gao, C.; Wang, Q.; He, L.; Niu, X.; Liu, Z.; Li, H.; Zeng, Y. A.; Roulis, M.; Liu, D.; Yang, Z.; Zhou, B.; Flavell, R.; Su, B.

10.1101/723221 — cell biology — Posted on 2019-10-21

1571 Significant improvement of reprogramming efficiency by transient overexpression of ZGA inducer Dux but not Dppa2/4

Yang, L.; Liu, X.; Song, L.; Di, A.; Su, G.; Bai, C.; Wei, Z.; Li, G.

10.1101/803593 — bioengineering — Posted on 2019-10-21

1572 Bias from competing risk before recruitment can severely bias Mendelian Randomization studies of conditions with shared etiology

Schooling, C. M.; Lopez, P. M.; Au Yeung, S.; Huang, J. V.

10.1101/716621 — genetics — Posted on 2019-10-21

1573 The unfolded protein response regulates pathogenic development of Ustilago maydis by Rok1-dependent inhibition of mating-type signaling

Schmitz, L.; Schwier, M. A.; Heimel, K.

10.1101/808717 — genetics — Posted on 2019-10-21

1574 Unifying single-cell annotations based on the Cell Ontology

Wang, S.; Pisco, A. O.; Karkanias, J.; Altman, R. B.

10.1101/810234 — bioinformatics — Posted on 2019-10-20

1575 Feature-based Molecular Networking in the GNPS Analysis Environment

Nothias, L. F.; Petras, D.; Schmid, R.; Duehrkop, K.; Rainer, J.; Sarvepalli, A.; Protsyuk, I.; Ernst, M.; Tsugawa, H.; Fleischauer, M.; Aicheler, F.; Aksenov, A.; Alka, O.; Allard, P.-M.; Barsch, A.; Cachet, X.; Caraballo, M.; Da Silva, R.; Dang, T.; Garg, N.; Gauglitz, J. M.; Gurevich, A.; Isaac, G.; Jarmusch, A. K.; Kamenik, Z.; Kang, K. B.; Kessler, N.; Koester, I.; Korf, A.; Le Gouellec, A.; Ludwig, M.; Martin H., C.; McCall, L.-I.; McSayles, J.; Meyer, S.; Mohimani, H.; Morsy, M.; Moyne, O.; Neumann, S.; Neuweger, H.; Nguyen, N. H.; Esposito-Nothias, M.; Paolini, J.; Phelan, V.; Pluskal,

10.1101/812404 — bioinformatics — Posted on 2019-10-20

1576 Protein Phosphatase 1 activity controls a balance between collective and single cell modes of migration

Chen, Y.; Kotian, N.; Aranjuez, G.; Chen, L.; Messer, C. L.; Burtscher, A.; Sawant, K.; Ramel, D.; Wang, X.; McDonald, J. A.

10.1101/811562 — developmental biology — Posted on 2019-10-20

1577 Granulins modulate liquid-liquid phase separation and aggregation of TDP-43 C-terminal domain

Bhopatkar, A. A.; Uversky, V. N.; Rangachari, V.

10.1101/812115 — biophysics — Posted on 2019-10-20

1578 Efficient sampling and noisy decisions

Heng, J. A.; Woodford, M.; Polania, R.

10.1101/799064 — neuroscience — Posted on 2019-10-20

1579 A Mechanism-based Outbreak Projection Study of Pertussis (Whooping Cough): Combining Particle Filtering and Compartmental Models with Pre-vaccination Surveillance data

Li, X.; Osgood, N.

10.1101/598490 — epidemiology — Posted on 2019-10-20

1580 Investigating the Central Dogma of Molecular Biology in the Context of Nuclear Architecture and Cell Cycle

Dhuppar, S.; Mazumder, A.

10.1101/810499 — cell biology — Posted on 2019-10-20

1581 DeepCLIP: Predicting the effect of mutations on protein-RNA binding with Deep Learning

Groenning, A. G. B.; Doktor, T. K.; Larsen, S. J.; Petersen, U. S. S.; Holm, L. L.; Bruun, G. H.; Hansen, M. B.; Hartung, A.-M.; Baumbach, J.; Andresen, B. S.

10.1101/757062 — bioinformatics — Posted on 2019-10-20

1582 Identification of risk variants and characterization of the polygenic architecture of disruptive behavior disorders in the context of ADHD

Demontis, D.; Walters, R. K.; Rajagopal, V. M.; Waldman, I. D.; Grove, J.; Als, T. D.; Dalsgaard, S.; Ribases, M.; Bybjerg-Grauholm, J.; Baekvad-Hansen, M.; Werge, T.; Nordentoft, M.; Mors, O.; Mortensen, P. B.; ADHD Working Group of the Psychiatric Genomics Consortium (PGC), ; Cormand, B.; Hougaard, D. M.; Neale, B.; Franke, B.; Faraone, S. V.; Borglum, A. D.

10.1101/791160 — genomics — Posted on 2019-10-20

1583 A photostable monomeric superfolder GFP

Valbuena, F.; Fitzgerald, I.; Strack, R. L.; Andruska, N.; Smith, L.; Glick, B. S.

10.1101/811588 — cell biology — Posted on 2019-10-20

1584 Effective physical properties of cell-cell interaction explain basic structural units of three-dimensional morphogenesis

Koyama, H.; Okumura, H.; Ito, A. M.; Otani, T.; Nakamura, K.; Kato, K.; Fujimori, T.

10.1101/812198 — biophysics — Posted on 2019-10-20

1585 Mesoscale correlation structure with single cell resolution during visual coding

Yu, Y.; Stirman, J. N.; Dorsett, C. R.; Smith, S. L.

10.1101/469114 — neuroscience — Posted on 2019-10-20

1586 Localization of BCR-ABL to stress granules contributes to its oncogenic function

Kashiwagi, S.; Fujioka, Y.; Kondo, T.; Satho, A. O.; Yoshida, A.; Fujioka, M.; Sasajima, H.; Amano, M.; Teshima, T.; Ohba, Y.

10.1101/801555 — cell biology — Posted on 2019-10-20

1587 Zygote morphogenesis but not the establishment of cell polarity in Plasmodium berghei is controlled by the small GTPase, RAB11A

Waters, A. P.; Patil, H. P.; Dickens, N.; Hughes, K.; Philip, N.; Lemgruber Soares, L.

10.1101/811802 — cell biology — Posted on 2019-10-20

1588 Hitching a Ride: Mechanics of Organelle Transport Through Linker-Mediated Hitchhiking

Mogre, S. S.; Christensen, J. R.; Reck-Peterson, S. L.; Koslover, E. F.

10.1101/811372 — biophysics — Posted on 2019-10-20

1589 Root Anatomy based on Root Cross-Section Image Analysis with Deep Learning

Wang, C.; Li, X.; Caragea, D.; Bheemanahalli, R.; Jagadish, S. V. K.

10.1101/442244 — bioinformatics — Posted on 2019-10-20

1590 Sensitivity and specificity of a Bayesian single trial analysis for time varying neural signals

Mohl, J. T.; Caruso, V. C.; Tokdar, S. T.; Groh, J. M.

10.1101/690958 — neuroscience — Posted on 2019-10-20

1591 Identifying density-dependent interactions in collective cell behaviour

Browning, A. P.; Jin, W.; Plank, M. J.; Simpson, M. J.

10.1101/811257 — cell biology — Posted on 2019-10-20

1592 A lysophospholipase plays role in generation of neutral-lipids required for hemozoin formation in malaria parasite

Asad, M.; Yamaryo-Botte, Y.; Hossain, M. E.; Thakur, V.; Jain, S.; Datta, G.; Botte, C. Y.; Mohmmed, A.

10.1101/808709 — microbiology — Posted on 2019-10-20

1593 Midbody remnant inheritance is regulated by the ESCRT subunit CHMP4C

Casares Arias, J.; Gonzalez, M. U.; San Paulo, A.; Ventimiglia, L. N.; Sadler, J. B.; Miguez, D. G.; Labat-de-Hoz, L.; Rubio-Ramos, A.; Rangel, L.; Bernabe-Rubio, M.; Fernandez-Barrera, J.; Correas, I.; Martin-Serrano, J.; Alonso, M. A.

10.1101/810523 — cell biology — Posted on 2019-10-20

1594 Towards Improved Molecular Identification Tools in Fine Fescue (Festuca L., Poaceae) Turfgrasses: Nuclear Genome Size, Ploidy, and Chloroplast Genome Sequencing

Qiu, Y.; Hirsch, C. D.; Yang, Y.; Watkins, E.

10.1101/708149 — plant biology — Posted on 2019-10-20

1595 Discrete neural clusters encode orientation, curvature and corners in macaque V4

jiang, R.; Li, M.; Tang, S.

10.1101/808907 — neuroscience — Posted on 2019-10-20

1596 Classification of platelet aggregates by agonist type

Zhou, Y.; Yasumoto, A.; Lei, C.; Huang, C.-J.; Kobayashi, H.; Wu, Y.; Yan, S.; Sun, C.-W.; Yatomi, Y.; Goda, K.

10.1101/805408 — cell biology — Posted on 2019-10-20

1597 Learning Representations for Gene Ontology Terms by Contextualized Text Encoders

Duong, D.; Uppunda, A.; Ju, C. J.-T.; Zhang, J.; Chen, M.; Eskin, E.; Li, J. J.; Chang, K.-W.

10.1101/765644 — bioinformatics — Posted on 2019-10-20

1598 Viable and efficient electroporation-based genetic manipulation of unstimulated human T cells

Aksoy, P.; Aksoy, B. A.; Czech, E.; Hammerbacher, J.

10.1101/466243 — immunology — Posted on 2019-10-20

1599 Correction of Off-Targeting in CRISPR Screens Uncovers Genetic Dependencies in Melanoma Cells

Perez, A. R.; Sala, L.; Perez, R. K.; Vidigal, J. A.

10.1101/809970 — genomics — Posted on 2019-10-20

1600 PROTEINATOR: Web-UI exploring repurposing hypotheses of PROTEIN InhibiTORs based on protein interactions

Tangadu, S.; Shankar, S.; Varanasi, B. V.; Athri, P.

10.1101/667329 — bioinformatics — Posted on 2019-10-19

1601 How flat can a horse be? Exploring 2D approximations of 3D crania in equids

Cardini, A.; Chiappelli, M.

10.1101/772624 — zoology — Posted on 2019-10-20

1602 Prototypic SNARE proteins are encoded in the genomes of Heimdallarchaeota, potentially bridging the gap between the prokaryotes and eukaryotes

Neveu, E.; Khalifeh, D.; Salamin, N.; Fasshauer, D.

10.1101/810531 — evolutionary biology — Posted on 2019-10-19

1603 A non-spatial account of place and grid cells based on clustering models of concept learning

Mok, R. M.; Love, B. C.

10.1101/421842 — neuroscience — Posted on 2019-10-19

1604 Experience-dependent reorganization drives development of a binocularly unified cortical representation of orientation

Whitney, D. E.; Chang, J. T.; Fitzpatrick, D.

10.1101/761395 — neuroscience — Posted on 2019-10-19

1605 Evidence for a role for BK channels in the regulation of ADAM17 activity.

Yoshida, M.; Willis, D.

10.1101/811000 — pharmacology and toxicology — Posted on 2019-10-19

1606 Suppressor mutations in Mecp2-null mice reveal that the DNA damage response is key to Rett syndrome pathology

Enikanolaiye, A.; Ruston, J.; Zeng, R.; Taylor, C.; Schrock, M. V.; Buchovecky, C. M.; Shendure, J.; Acar, E.; Justice, M. J.

10.1101/810929 — genetics — Posted on 2019-10-19

1607 A protein-centric approach for exome variant aggregation enables sensitive association analysis with clinical outcomes

Li, G. X.; Munro, D.; Fermin, D.; Vogel, C.; Choi, H.

10.1101/653683 — genomics — Posted on 2019-10-19

1608 A molecular logic of sensory coding revealed by optical tagging of physiologically-defined neuronal types

Lee, D.; Kume, M.; Holy, T. E.

10.1101/692079 — neuroscience — Posted on 2019-10-19

1609 Are Sources of EEG and MEG rhythmic activity the same? An analysis based on BC-VARETA

Yuan, Q.; Riaz, U.; Li, M.; Wang, Y.; Paz-Linares, D.; Gonzalez-Moreira, E.; Razzaq, F. A.; Valdes-Sosa, P. A.

10.1101/748996 — neuroscience — Posted on 2019-10-19

1610 Multimodal Study of the Effects of Varying Task Load Utilizing EEG, GSR and Eye-Tracking

Born, J.; Ramachandran, B. R. N.; Romero Pinto, S. A.; Rama, R.; Winkler, S.

10.1101/798496 — neuroscience — Posted on 2019-10-19

1611 Integrative analysis of 10,000 epigenomic maps across 800 samples for regulatory genomics and disease dissection

Adsera, C. B.; Park, Y.; Meuleman, W.; Kellis, M.

10.1101/810291 — genomics — Posted on 2019-10-19

1612 The potentials and pitfalls of a human cervical organoid model including Langerhans cells

Jackson, R.; Lukacs, J. D.; Zehbe, I.

10.1101/733501 — cell biology — Posted on 2019-10-19

1613 Spatial modeling of prostate cancer metabolic gene expression reveals extensive heterogeneity and selective vulnerabilities

Wang, Y.; Ma, S.; Ruzzo, W. L.

10.1101/719294 — cancer biology — Posted on 2019-10-19

1614 The neutrophil enzyme myeloperoxidase directly modulates neuronal response after subarachnoid hemorrhage, a sterile injury model

Coulibaly, A. P.; Pezuk, P.; Varghese, P.; Gartman, W.; Triebwasser, D.; Kulas, J. A.; Liu, L.; Syed, M.; Tvrdik, P.; Ferris, H.; Provencio, J. J.

10.1101/627638 — neuroscience — Posted on 2019-10-19

1615 Cell-projection pumping: A hydrodynamic cell-stiffness dependent mechanism for cytoplasmic transfer between mammalian cells

Zoellner, H.; Paknejad, N.; Cornwell, J.; Chami, B.; Romin, Y.; Boyko, V.; Fujisawa, S.; Kelly, E.; Lynch, G. W.; Rogers, G.; Manova, K.; Moore, M. A.

10.1101/531798 — cell biology — Posted on 2019-10-19

1616 Diotic and dichotic frequency discrimination thresholds in musicians and non-musicians: relationships between perception, musical ability and self-evaluated competence.

Musacchia, G.; Inabinet, D.; LaCruz, J. D.; Cha, J.; Ng, K.

10.1101/810598 — neuroscience — Posted on 2019-10-18

1617 Erosion of the Epigenetic Landscape and Loss of Cellular Identity as a Cause of Aging in Mammals

Yang, J.-H.; Griffin, P. T.; Vera, D. L.; Apostolides, J. K.; Hayano, M.; Meer, M. V.; Salfati, E. L.; Su, Q.; Munding, E. M.; Blanchette, M.; Bhakta, M.; Dou, Z.; Xu, C.; Pippin, J. W.; Creswell, M. L.; O'Connell, B. L.; Green, R. E.; Garcia, B. A.; Berger, S. L.; Oberdoerffer, P.; Shankland, S. J.; Gladyshev, V. N.; Rajman, L. A.; Pfenning, A. R.; Sinclair, D. A.

10.1101/808642 — molecular biology — Posted on 2019-10-19

1618 The weakest link: uncertainty and sensitivity analysis of extinction probability estimates for tsetse (Glossina spp) populations

Are, E. B.; Hargrove, J. W.

10.1101/810564 — zoology — Posted on 2019-10-18

1619 Optimal fertigation for high yield and fruit quality of greenhouse strawberry

Wu, Y.; Li, L.; Li, M.; Zhang, M.; Sun, H.; Sigrimis, N.

10.1101/810606 — plant biology — Posted on 2019-10-18

1620 Correlation between Serum Kisspeptin and Spermatogenic Function in Men

Yu, H.; Liu, J.; Han, Y.; Chen, C.; meng, f.

10.1101/810572 — physiology — Posted on 2019-10-18

1621 Genome-wide variations analysis of special waxy sorghum cultivar Hongyingzi for brewing Moutai liquor

Wang, C.; Zhou, L.; Gao, X.; Ding, Y.; Cheng, B.; Zhang, G.; Cao, N.; Xu, Y.; Shao, M.; Zhang, L.

10.1101/810580 — genomics — Posted on 2019-10-18

1622 Large DNA virus promoted the endosymbiotic evolution to make a photosynthetic eukaryote

Matsuo, M.; Katahata, A.; Tachikawa, M.; Minakuchi, Y.; Noguchi, H.; Toyoda, A.; Fujiyama, A.; Suzuki, Y.; Hata, T.; Satoh, S.; Nakayama, T.; Kamikawa, R.; Nomura, M.; Inagaki, Y.; Ishida, K.-i.; Obokata, J.

10.1101/809541 — evolutionary biology — Posted on 2019-10-18

1623 Tensor Factorization-based Prediction with an Application to Estimating the Risk of Chronic Diseases

Wang, H.; Zhang, Q.; Chen, Y. F.; Leung, E.; Wong, E.; Yeoh, E.-k.

10.1101/810556 — bioinformatics — Posted on 2019-10-18

1624 Cleavage, down-regulation and aggregation of serum amyloid A

Wang, W.; Khatua, P.; Hansmann, U. H. E.

10.1101/811398 — biophysics — Posted on 2019-10-18

1625 Liquid-like and rigid-body motions in molecular-dynamics simulations of a crystalline protein

Wych, D. C.; Fraser, J. S.; Mobley, D. L.; Wall, M.

10.1101/811083 — biophysics — Posted on 2019-10-18

1626 In response to Luteijn et al.: Concerns regarding cGAMP uptake assay and evidence that SLC19A1 is not the major cGAMP importer in human PBMCs

Ritchie, C.; Cordova, A. F.; Li, L.

10.1101/798397 — biochemistry — Posted on 2019-10-18

1627 Transcranial or non-transcranial stimulation? Results of a combined TMS-EEG feasibility study

Krawinkel, L. A.; Forisch, J.; Feldheim, J. F.; Backhaus, W.; Quandt, F.; Gerloff, C.

10.1101/525584 — neuroscience — Posted on 2019-10-18

1628 Activation of phospholipase C β by Gβγ and Gαq involves C-terminal rearrangement to release auto-inhibition

Fisher, I.; Jenkins, M. L.; Tall, G. G.; Burke, J. E.; Smrcka, A. V.

10.1101/810994 — biochemistry — Posted on 2019-10-18

1629 Elevated Expression of a Functional Suf Pathway in the E. coli BL21(DE3) Cell Line Enhances Recombinant Production of an Iron-Sulfur Cluster Containing Protein.

Corless, E. I.; Mettert, E. L.; Kiley, P. J.; Antony, E.

10.1101/811059 — biochemistry — Posted on 2019-10-18

1630 Integrative Modeling of a Sin3/HDAC Complex Sub-structure

Banks, C. A. S.; Zhang, Y.; Miah, S.; Hao, Y.; Adams, M. K.; Wen, Z.; Thornton, J. L.; Florens, L.; Washburn, M.

10.1101/810911 — biochemistry — Posted on 2019-10-18

1631 Integrating the metabolic processes of Escherichia coli with virulence by decreasing glucose availability, inhibiting the acetyl-CoA carboxylase gene accA with asRNA, and through the quantification of the luxs gene

Hillman, T.

10.1101/747980 — microbiology — Posted on 2019-10-18

1632 Differential contribution of p300 and CBP to regulatory elements in mESCs

Martire, S.; Sundaresan, A.; Banaszynski, L.

10.1101/806869 — genomics — Posted on 2019-10-18

1633 Drug-tolerant idling melanoma cells exhibit theory-predicted metabolic low-low phenotype

Jia, D.; Paudel, B.; Hayford, C. E.; Hardeman, K.; Levine, H.; Onuchic, J. N.; Quaranta, V.

10.1101/809889 — systems biology — Posted on 2019-10-18

1634 kSHREC ‘Delta’ reflects the shape of kinetochore rather than intrakinetochore tension

Renda, F.; Magidson, V.; Tikhonenko, I.; Miles, C. E.; Mogilner, A.; Khodjakov, A.

10.1101/811075 — cell biology — Posted on 2019-10-18

1635 DeepMicro: deep representation learning for disease prediction based on microbiome data

Oh, M.; Zhang, L.

10.1101/785626 — bioinformatics — Posted on 2019-10-18

1636 A series of constitutive expression vectors to accurately measure the rate of DNA transposition and correct for auto-inhibition

Tellier, M.; Chalmers, R.

10.1101/423012 — molecular biology — Posted on 2019-10-18

1637 Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks

Koo, P. K.; Eddy, S. R.

10.1101/362756 — genomics — Posted on 2019-10-18

1638 Time distributed data analysis by Cosinor.Online application

Molcan, L.

10.1101/805960 — bioinformatics — Posted on 2019-10-18

1639 Structural controllability predicts functional patterns and neuromodulatory benefits associated with working memory

Beynel, L.; Deng, L.; Crowell, C.; Dannhauer, M.; Palmer, H.; Hilbig, S.; Peterchev, A. V.; Luber, B.; Lisanby, S. H.; Cabeza, R.; Appelbaum, L. G.; Davis, S. W.

10.1101/794388 — neuroscience — Posted on 2019-10-18

1640 Morphometry and feeding behaviour in two orthopteran species in the Kalahari (Namibia): The trait as you like it

Conti, E.; Costa, G.; Mulder, C.

10.1101/751826 — ecology — Posted on 2019-10-18

1641 Presence or absence of Ras-dimerization shows distinct kinetic signature in Ras-Raf interaction

Sarkar, S.; Garcia, A. E.

10.1101/810150 — biophysics — Posted on 2019-10-18

1642 A NOVEL FULLY AUTOMATED MRI-BASED DEEP LEARNING METHOD FOR CLASSIFICATION OF IDH MUTATION STATUS IN BRAIN GLIOMAS

Bangalore Yogananda, C. G.; Shah, B. R.; Vejdani-Jahromi, M.; Nalawade, S.; Murugesan, G. K.; Yu, F. F.; Pinho, M. C.; Wagner, B. C.; Mickey, B.; Patel, T.; Fei, B.; Madhuranthakam, A. J.; Maldjian, J. A.

10.1101/757385 — neuroscience — Posted on 2019-10-18

1643 Pan-cancer predictions of MEK inhibitor sensitivity are partially driven by between-tissue differences

Lloyd, J. P.; Soellner, M.; Merajver, S. D.; Li, J. Z.

10.1101/800193 — cancer biology — Posted on 2019-10-18

1644 The itch-scratch reflex generates protective immunity

Radjavi, A.

10.1101/808477 — immunology — Posted on 2019-10-18

1645 Contingent Convergence: The ability to detect convergent genomic evolution is dependent on population size and migration

Whiting, J. R.; Fraser, B. A.

10.1101/592105 — evolutionary biology — Posted on 2019-10-18

1646 Pinhole Optical Tweezers: Extending the Photobleaching Lifetime in the Presence of an Optical Trap by Wavefront Engineering

Zhang, Z.; Milstein, J. N.

10.1101/808352 — biophysics — Posted on 2019-10-18

1647 Monitoring of group mates in relation to their activity in mandrills

Schino, G.; Scerbo, M.

10.1101/810440 — animal behavior and cognition — Posted on 2019-10-18

1648 Components from the human c-myb transcriptional regulation system reactivate epigenetically repressed transgenes

Barrett, C. M.; McCraken, R.; Elmer, J.; Haynes, K. A.

10.1101/487736 — synthetic biology — Posted on 2019-10-18

1649 Pseudo-data generation allows the statistical re-evaluation of toxicological bioassays based on summary statistics

Hothorn, L. A.; Kluxen, F. M.; Hasler, M.

10.1101/810408 — pharmacology and toxicology — Posted on 2019-10-18

1650 Single Cell RNA-seq reveals ectopic and aberrant lung resident cell populations in Idiopathic Pulmonary Fibrosis

Adams, T. S.; Schupp, J. C.; Poli, S.; Ayaub, E. A.; Neumark, N.; Ahangari, F.; Chu, S. G.; Raby, B. A.; DeIuliis, G.; Januszyk, M.; Duan, Q.; Arnett, H. A.; Siddiqui, A.; Washko, G. R.; Homer, R.; Yan, X.; Rosas, I. O.; Kaminski, N.

10.1101/759902 — genomics — Posted on 2019-10-18

1651 Movement patterns of urban free-roaming dogs: implications for rabies control in Arequipa, Peru

Raynor, B.; De la Puente, M.; Johnson, A.; Diaz-Espinoza, E.; Levy, M. Z.; Recuenco, S. E.; Castillo-Neyra, R.

10.1101/684381 — ecology — Posted on 2019-10-18

1652 Weakly-Supervised Prediction of Cell Migration Modes in Confocal Microscopy Images Using Bayesian Deep Learning

Gupta, A.; Larsson, V.; Matuszewski, D.; Stromblad, S.; Wahlby, C.

10.1101/810473 — systems biology — Posted on 2019-10-18

1653 Nanopore sequencing for the detection and the identification of Xylella fastidiosa subspecies and sequence types from naturally infected plant material

Faino, L.; Scala, V.; Albanese, A.; Modesti, V.; Grottoli, A.; Pucci, N.; L'Aurora, A.; Reverberi, M.; Loreti, S.

10.1101/810648 — pathology — Posted on 2019-10-18

1654 Structured internal cortical states deduced from fixed tactile input patterns

Norrlid, J.; Enander, J. M. D.; Mogensen, H.; Jorntell, H.

10.1101/810770 — neuroscience — Posted on 2019-10-18

1655 The concerted emergence of well-known spatial and temporal ecological patterns in an evolutionary food web model in space

Hamm, M.; Drossel, B.

10.1101/810390 — ecology — Posted on 2019-10-18

1656 Analysis the Detailed Process of Glomerular Capillary Formation Using Immunofluorescence Perform With Ultrathick Section

Yu, T.; liu, c.

10.1101/810382 — developmental biology — Posted on 2019-10-18

1657 FDAAA TrialsTracker: A live informatics tool to monitor compliance with FDA requirements to report clinical trial results

DeVito, N. J.; Bacon, S.; Goldacre, B.

10.1101/266452 — clinical trials — Posted on 2019-10-18

1658 Tracking the emergence of location-based spatial representations in human scene-selective cortex

Berens, S. C.; Joensen, B. H.; Horner, A. J.

10.1101/547976 — neuroscience — Posted on 2019-10-18

1659 The flower pot method of REM sleep deprivation causes apoptotic cell death in the hepatocytes of rat

Pandey, A.; Kumar, D.; Ray, G.; Kar, S.

10.1101/375717 — molecular biology — Posted on 2019-10-18

1660 Anatomically informed Bayesian spatial priors for fMRI analysis

Abramian, D.; Siden, P.; Knutsson, H.; Villani, M.; Eklund, A.

10.1101/810796 — neuroscience — Posted on 2019-10-18

1661 Genotypic Variation in Below- to Aboveground Systemic Induction of Glucosinolates Mediates Plant Fitness Consequences under Herbivore Attack

Bakhtiari, M.; Rasmann, S.

10.1101/810432 — ecology — Posted on 2019-10-18

1662 Mechano-modulatory synthetic niches for liver organoid derivation

Sorrentino, G.; Rezakhani, S.; Yildiz, E.; Nuciforo, S.; Heim, M.; Lutolf, M.; Schoonjans, K.

10.1101/810275 — bioengineering — Posted on 2019-10-18

1663 Estimates of cortical column orientation improveMEG source inversion

Bonaiuto, J. J.; Afdideh, F.; Ferez, M.; Wagstyl, K.; Mattout, J.; Bonnefond, M.; Barnes, G. R.; Bestmann, S.

10.1101/810267 — neuroscience — Posted on 2019-10-18

1664 Revealing α oscillatory activity using voltage-sensitive dye imaging in monkey V1

Chemla, S.; Roux, S.; Reynaud, A.; Chavane, F.; VanRullen, R.

10.1101/810325 — neuroscience — Posted on 2019-10-18

1665 Integrative analysis of 10,000 epigenomic maps across 800 samples for regulatory genomics and disease dissection

Adsera, C. B.; Park, Y.; Meuleman, W.; Kellis, M.

10.1101/810291 — genomics — Posted on 2019-10-18

1666 Analysis of genetically independent phenotypes identifies shared genetic factors associated with chronic musculoskeletal pain at different anatomic sites

Tsepilov, Y. A.; Freydin, M.; Shadrina, A. S.; Sharapov, S.; Elgaeva, E. E.; van Zundert, J.; Karssen, L. C.; Suri, P.; Williams, F. M.; Aulchenko, Y. S.

10.1101/810283 — genomics — Posted on 2019-10-18

1667 Metabolic trade-offs hide unforeseen benefits of plasmids carriage

Reding Roman, R. C.

10.1101/810259 — evolutionary biology — Posted on 2019-10-18

1668 Empirical Analysis of Phylogenetic Quasi-Terraces

Breitling, P.; Bettisworth, B.; Reszczynski, L.; Chernomor, O.; Stamatakis, A.

10.1101/810309 — bioinformatics — Posted on 2019-10-18

1669 Efficient chromosome-scale haplotype-resolved assembly of human genomes

Garg, S.; Arkarachai Fungtammasan, A.; Carroll, A.; Chou, M.; Schmitt, A.; Zhou, X.; Mac, S.; Peluso, P.; Hatas, E.; Ghurye, J.; Maguire, J.; Mahmoud, M.; Cheng, H.; Heller, D.; Zook, J. M.; Moemke, T.; Marschall, T.; Sedlazeck, F. J.; Aach, J.; Chin, C.-S.; Church, G. M.; Li, H. M.

10.1101/810341 — bioinformatics — Posted on 2019-10-18

1670 Tandem paired nicking promotes precise genome editing with scarce interference by p53

Hyodo, T.; Rahman, M. L.; Karnan, S.; Ito, T.; Toyoda, A.; Ota, A.; Wahiduzzaman, M.; Tsuzuki, S.; Okada, Y.; Hosokawa, Y.; Konishi, H.

10.1101/810333 — molecular biology — Posted on 2019-10-18

1671 Discovery of synthetic lethal interactions from large-scale pan-cancer perturbation screens

Srivatsa, S.; Montazeri, H.; Bianco, G.; Coto-Llerena, M.; Ng, C. K.; Piscuoglio, S.; Beerenwinkel, N.

10.1101/810374 — bioinformatics — Posted on 2019-10-18

1672 Full-waveform inversion imaging of the human brain

Guasch, L.; Calderon Agudo, O.; Tang, M.-X.; Nachev, P.; Warner, M.

10.1101/809707 — neuroscience — Posted on 2019-10-18

Luo, N.; Sui, J.; Abrol, A.; Lin, D.; Chen, J.; Vergara, V.; Fu, Z.; Du, Y.; Damaraju, E.; Xu, Y.; Turner, J.; Calhoun, V.

10.1101/810101 — neuroscience — Posted on 2019-10-18

1674 Passenger mutations confound phenotypes of SARM1-deficient mice

Uccellini, M. B.; Bardina, S.; Sanchez-Aparicio, M. T.; White, K. M.; Hou, Y.-J.; Lim, J. K.; Garcia-Sastre, A.

10.1101/802702 — microbiology — Posted on 2019-10-18

1675 APSiC: Analysis of Perturbation Screens for the Identification of Novel Cancer Genes

Montazeri, H.; Coto-Llerena, M.; Bianco, G.; Zangeneh, E.; Taha-Mehlitz, S.; Paradiso, V.; Srivatsa, S.; de Weck, A.; Roma, G.; Lanzafame, M.; Bolli, M.; Beerenwinkel, N.; von Flüe, M.; Terracciano, L. M.; Piscuoglio, S.; Ng, C. K.

10.1101/807248 — genomics — Posted on 2019-10-18

1676 ETV6/RUNX1 Fusion Gene Abrogation Decreases The Oncogenic Potencial Of Tumour Cells In A Preclinical Model Of Acute Lymphoblastic Leukaemia.

Montano, A.; Ordonez, J. L.; Alonso-Perez, V.; Hernandez-Sanchez, J.; Gonzalez, T.; Benito, R.; Garcia-Tunon, I.; Hernandez-Rivas, J. M.

10.1101/809525 — cancer biology — Posted on 2019-10-18

1677 Paradigm of Vanadium pentoxide nanoparticle-induced autophagy and apoptosis in triple-negative breast cancer cells

Suma, P. R. P.; Padmanabhan, R. A.; Telukutla, S. R.; Ravindran, R.; Velikkakath, A. K. G.; Dekiwadia, C. D.; Paul, W.; Shenoy, S. J.; Laloraya, M.; Srinivasula, S. M.; Bhosale, S. V.; Jayasree, R. S.

10.1101/810200 — scientific communication and education — Posted on 2019-10-18

1678 Evaluating the granularity and statistical structure of lesions and behaviour in post-stroke aphasia

Zhao, Y.; Halai, A. D.; Lambon Ralph, M. A.

10.1101/802595 — neuroscience — Posted on 2019-10-18

1679 Can genome-based analysis be the new gold-standard for routine Salmonella serotyping?

Banerji, S.; Simon, S.; Tille, A.; Flieger, A.

10.1101/806208 — microbiology — Posted on 2019-10-18

1680 Yersinia canariae sp. nov., isolated from a human yersiniosis case

Nguyen, S. V.; Greig, D.; Hurley, D.; Cao, Y.; McCabe, E.; Mitchell, M.; Jenkins, C.; Fanning, S.

10.1101/803825 — microbiology — Posted on 2019-10-18

1681 The M-phase regulatory phosphatase PP2A-B55δ opposes protein kinase A on Arpp19 to initiate meiotic division

Lemonnier, T.; Daldello, E. M.; Poulhe, R.; Le, T.; Miot, M.; Jessus, C.; Dupre, A.

10.1101/810549 — cell biology — Posted on 2019-10-18

1682 FANCD2 tunes the UPR preventing mitochondrial stress-induced common fragile site instability.

Fernandes, P.; Miotto, B.; Saint-Ruf, C.; Nahse, V.; Ravera, S.; Cappelli, E.; Naim, V.

10.1101/808915 — cell biology — Posted on 2019-10-18

1683 A toolbox of Stable Integration Vectors (SIV) in the fission yeast Schizosaccharomyces pombe

Vjestica, A.; Marek, M.; N'kosi, P.; Merlini, L.; Liu, G.; Berard, M.; Billault-Chaumartin, I.; Martin, S. G.

10.1101/808329 — cell biology — Posted on 2019-10-18

1684 Plasma-derived exosomal analysis and deconvolution enables prediction and tracking of melanoma checkpoint blockade response

Shi, A.; Kasumova, G. G.; Michaud, W. A.; Cintolo-Gonzalez, J.; Ohmura, J. F.; Mehta, A.; Chien, I.; Frederick, D. T.; Cohen, S.; Plana, D.; Johnson, D.; Flaherty, K. T.; Sullivan, R. J.; Kellis, M.; Boland, G. M.

10.1101/809699 — cancer biology — Posted on 2019-10-18

1685 Factorial design as a tool to evaluate image analysis workflows systematically: its application to the filament tracing problem

Scholz, L. A.; Caznok Silveira, A. C.; Sugai-Guerios, M. H.; Mitchell, D. A.

10.1101/806216 — bioinformatics — Posted on 2019-10-18

1686 3’-5’ crosstalk contributes to transcriptional bursting

Cavallaro, M.; Walsh, M. D.; Jones, M.; Teahan, J.; Tiberi, S.; Finkenstadt, B.; Hebenstreit, D.

10.1101/514174 — systems biology — Posted on 2019-10-18

1687 Mother machine image analysis with MM3

Sauls, J. T.; Schroeder, J. W.; Brown, S. D.; Le Treut, G.; Si, F.; Li, D.; Wang, J. D.; Jun, S.

10.1101/810036 — systems biology — Posted on 2019-10-18

1688 Reader Engagement with Wikipedia’s Medical Content

Maggio, L.; Steinberg, R. M.; Piccardi, T.; Willinsky, J. M.

10.1101/797779 — scientific communication and education — Posted on 2019-10-18

1689 Conflict of Interest Policies at German medical schools - A long way to go

Grabitz, P. R.; Friedmann, Z.; Gepp, S.; Hess, L. U.; Specht, L.; Struck, M.; Tragert, S.; Walther, T.; Klemperer, D.

10.1101/809723 — scientific communication and education — Posted on 2019-10-18

1690 Proteomic and metabolomic profiling underlines the stage- and time-dependent effects of high temperature on grape berry metabolism

Lecourieux, D.; Kappel, C.; Claverol, S.; Pieri, P.; Feil, R.; Lunn, J. E.; Bonneu, M.; Wang, L.; Gomes, E.; Delrot, S.; Lecourieux, F.

10.1101/810481 — plant biology — Posted on 2019-10-18

1691 Interactions between calmodulin and neurogranin govern the dynamics of CaMKII as a leaky integrator

Ordyan, M.; Bartol, T. M.; Kennedy, M. B.; Rangamani, P.; Sejnowski, T. J.

10.1101/809905 — neuroscience — Posted on 2019-10-18

1692 The interoceptive hippocampus: mouse brain endocrine receptor expression highlights a dentate gyrus (DG)-cornu ammonis (CA) challenge-sufficiency axis

Lathe, R.; Singadia, S.; Jordan, C.; Riedel, G.

10.1101/802975 — neuroscience — Posted on 2019-10-18

1693 Gamma band oscillations drives information flow in theta and delta band between hippocampus and medial pre-frontal cortex

Babu Henry Samuel, I.

10.1101/809962 — neuroscience — Posted on 2019-10-18

1694 Viral manipulation of functionally distinct neurons from mice to humans

Vormstein-Schneider, D. C.; Lin, J. D.; Pelkey, K. A.; Chittajallu, R.; Guo, B.; Arias Garcia, M.; Sakopoulos, S.; Stevenson, O.; Schneider, G.; Zhang, Q.; Sharma, J.; Franken, T. P.; Smith, J.; Vogel, I.; Sanchez, V.; Ibrahim, L. A.; Burbridge, T.; Favuzzi, E.; Saldi, G. A.; Xu, Q.; Guo, L.; Yuan, X.; Zaghloul, K. A.; Sabri, E.; Goldberg, E. M.; Devinsky, O.; Batista-Brito, R.; Reynolds, J.; Feng, G.; Fu, Z.; McBain, C. J.; Fishell, G. J.; Dimidschstein, J.

10.1101/808170 — neuroscience — Posted on 2019-10-18

1695 Individual neuronal subtypes control initial myelin sheath growth and stabilization

Nelson, H. N.; Treichel, A. J.; Eggum, E. N.; Martell, M. R.; Kaiser, A. J.; Trudel, A. G.; Gronseth, J. R.; Maas, S. T.; Bergen, S.; Hines, J. H.

10.1101/809996 — neuroscience — Posted on 2019-10-18

1696 AMR - An R Package for Working with Antimicrobial Resistance Data

Berends, M. S.; Luz, C. F.; Friedrich, A. W.; Sinha, B. N.; Albers, C. J.; Glasner, C.

10.1101/810622 — microbiology — Posted on 2019-10-18

1697 Structure of herpes simplex virus pUL7:pUL51, a conserved complex required for efficient herpesvirus assembly

Butt, B. G.; Owen, D. J.; Jeffries, C.; Ivanova, L.; Houghton, J. W.; Ahmed, M. F.; Antrobus, R.; Svergun, D. I.; Welch, J. J.; Crump, C. M.; Graham, S. C.

10.1101/810663 — microbiology — Posted on 2019-10-18

1698 Fine-tuning Polygenic Risk Scores with GWAS Summary Statistics

Zhao, Z.; Yi, Y.; Wu, Y.; Zhong, X.; Lin, Y.; Hohman, T. J.; Fletcher, J.; Lu, Q.

10.1101/810713 — genetics — Posted on 2019-10-18

1699 Hide and seek: hidden genetic variance contributing to the adaptive potential of selfing populations

Clo, J.; Ronfort, J.; Abu Awad, D.

10.1101/810515 — evolutionary biology — Posted on 2019-10-18

1700 Prototypic SNARE proteins are encoded in the genomes of Heimdallarchaeota, potentially bridging the gap between the prokaryotes and eukaryotes

Neveu, E.; Khalifeh, D.; Salamin, N.; Fasshauer, D.

10.1101/810531 — evolutionary biology — Posted on 2019-10-18

1701 Gene Ontology Meta Annotator for Plants

Wimalanathan, K.; Lawrence-Dill, C. J.

10.1101/809988 — bioinformatics — Posted on 2019-10-18

1702 Evaluation of Commercially Available Exosomal Isolation Kits from Human Plasma

Yuzhe, S.; Zhen, H.; Guo, M.; Ye, J.; Liu, Z.; Zhang, X.; Yang, Y.; Nie, C.

10.1101/808931 — bioinformatics — Posted on 2019-10-18

McNabb, C. B.; Burgess, L. G.; Fancourt, A.; Mulligan, N.; FitzGibbon, L.; Riddell, P.; Murayama, K.

10.1101/788208 — animal behavior and cognition — Posted on 2019-10-18

1704 An Evolutionarily Conserved piRNA-producing Locus Required for Male Mouse Fertility

Wu, P.-H.; Fu, Y.; Cecchini, K.; Ozata, D. M.; Arif, A.; Yu, T.; Colpan, C.; Gainetdinov, I.; Weng, Z.; Zamore, P. D.

10.1101/386201 — genetics — Posted on 2019-10-18

1705 Light scatter and fluorescence calibration allow standard comparisons of small particle data between different instruments.

Welsh, J. A.; Tang, V. A.

10.1101/796961 — cell biology — Posted on 2019-10-18

1706 Flexible recruitment of memory-based choice representations by human medial-frontal cortex

Minxha, J.; Adolphs, R.; Fusi, S.; Mamelak, A.; Rutishauser, U.

10.1101/809673 — neuroscience — Posted on 2019-10-18

1707 Separable recruitment of DNA Polymerase α for initiation of DNA synthesis at replication origins and lagging-strand priming during replication elongation

Porcella, S. Y.; Koussa, N. C.; Tang, C. P.; Kramer, D. N.; Srivastava, P.; Smith, D. J.

10.1101/352567 — molecular biology — Posted on 2019-10-18

1708 Protein Interactome of the Cancerous Inhibitor of Protein Phosphatase 2A (CIP2A) in Th17 Cells

Khan, M. M.; Valikangas, T.; Khan, M. H.; Moulder, R.; Ullah, U.; Bhosale, S. D.; Komsi, E.; Butt, U.; Qiao, X.; Westermarck, J.; Elo, L. L.; Lahesmaa, R.

10.1101/809459 — systems biology — Posted on 2019-10-18

1709 Computational discovery of hidden breaks in 28S ribosomal RNAs across eukaryotes and consequences for RNA Integrity Numbers

Natsidis, P.; Schiffer, P. H.; Salvador-Martinez, I.; Telford, M. J.

10.1101/773226 — bioinformatics — Posted on 2019-10-18

1710 Cryo-EM structure of full-length HIV-1 Env bound with the Fab of antibody PG16

Pan, J.; Peng, H.; Chen, B.; Harrison, S.

10.1101/730333 — immunology — Posted on 2019-10-18

1711 Characterization of Arabidopsis thaliana promoter bidirectionality and antisense RNAs by depletion of nuclear RNA decay enzymes

Thieffry, A.; Bornholdt, J.; Ivanov, M.; Brodersen, P.; Sandelin, A.

10.1101/809194 — genomics — Posted on 2019-10-18

1712 Topological inference from spontaneous activity structures in FMRI videos with peristence barcodes.

Don, A. P.; Peters, J. F.; Ramanna, S.; Tozzi, A.

10.1101/809293 — neuroscience — Posted on 2019-10-18

1713 Reference transcriptome data in silkworm, Bombyx mori

Yokoi, K.; Tsubota, T.; Jianqiang, S.; Jouraku, A.; Sezutsu, H.; Bono, H.

10.1101/805978 — genomics — Posted on 2019-10-18

1714 Function of TRIP6 in brain-specific ciliogenesis

Shukla, S.; Urbanek, P.; Frappart, L.; Haenold, R.; Nagel, S.; Monajembashi, S.; Grigaravicius, P.; Min, W. K.; Tapias, A.; Kassel, O.; Heuer, H.; Wang, Z.-Q.; Ploubidou, A.; Herrlich, P. A.

10.1101/777052 — cell biology — Posted on 2019-10-18

1715 Dissociable mechanisms govern when and how strongly reward attributes affect decisions

Maier, S. U.; Raja Beharelle, A.; Polania, R.; Ruff, C. C.; Hare, T. A.

10.1101/434860 — neuroscience — Posted on 2019-10-18

1716 Manipulating immune pathways differentially impact emotionality: dissociable effects of complement C3 and C3aR on learned fear and innate anxiety

Westacott, L. J.; Humby, T.; Naan, N.; Brain, S. A.; Bush, E.-L.; Toneva, M.; Moon, A. L.; Reddaway, J.; Owen, M. J.; Hall, J.; Hughes, T. R.; Morgan, B. P.; Gray, W. P.; Wilkinson, L.

10.1101/685537 — neuroscience — Posted on 2019-10-18

1717 Plants with self-sustained luminescence

Mitiouchkina, T.; Mishin, A. S.; Gonzalez Somermeyer, L.; Markina, N. M.; Chepurnyh, T. V.; Guglya, E. B.; Karataeva, T. A.; Palkina, K. A.; Shakhova, E. S.; Fakhranurova, L. I.; Chekova, S. V.; Tsarkova, A. S.; Golubev, Y. V.; Negrebetsky, V. V.; Dolgushin, S. A.; Shalaev, P. V.; Melnik, O. A.; Shipunova, V. O.; Deyev, S. M.; Bubyrev, A. I.; Pushin, A. S.; Choob, V. V.; Dolgov, S. V.; Kondrashov, F. A.; Yampolsky, I. V.; Sarkisyan, K. S.

10.1101/809376 — plant biology — Posted on 2019-10-18

1718 Antibody feedback limits the expansion of cognate memory B cells but drives the diversification of vaccine-induced antibody responses

McNamara, H. A.; Idris, A. H.; Sutton, H. J.; Flynn, B. J.; Cai, Y.; Wiehe, K.; Lyke, K. E.; Chatterjee, D.; KC, N.; Chakravarty, S.; Sim, K. L.; Hoffman, S. L.; Bonsignori, M.; Seder, R. A.; Cockburn, I. A.

10.1101/808543 — immunology — Posted on 2019-10-18

1719 DHHC20 palmitoyl-transferase reshapes the membrane to foster catalysis

Stix, R.; Song, J.; Banerjee, A.; Faraldo-Gomez, J.

10.1101/808469 — biophysics — Posted on 2019-10-18

1720 Presence or absence of Ras-dimerization shows distinct kinetic signature in Ras-Raf interaction

Sarkar, S.; Garcia, A. E.

10.1101/810150 — biophysics — Posted on 2019-10-18

1721 Integrating ensemble systems biology feature selection and bimodal deep neural network for breast cancer prognosis prediction

Cheng, L.-H.; Lin, C.

10.1101/810176 — bioinformatics — Posted on 2019-10-18

1722 Partial metal ion saturation of C2 domains primes Syt1-membrane interactions

Katti, S.; Nyenhuis, S. B.; Her, B.; Cafiso, D. S.; Igumenova, T. I.

10.1101/810010 — biochemistry — Posted on 2019-10-18

1723 A flexible network of Vimentin intermediate filaments promotes the migration of amoeboid cancer cells through confined environments

Tudor, S. M.; Lavenus, S. B.; Logue, J. S.

10.1101/788810 — cell biology — Posted on 2019-10-18

1724 Methylthioadenosine is Not Dramatically Elevated in MTAP-Homozygous Deleted Primary Glioblastomas

Barekatain, Y.; Yan, V. C.; Ackroyd, J. J.; Poral, A. H.; Tran, T.; Georgiou, D. K.; Arthur, K.; deCarvalho, A.; Lin, Y.-H.; Satani, N. B.; Ballato, E. S.; Verhaak, R.; de Groot, J.; Huse, J. T.; Asara, J. M.; Muller, F. L.

10.1101/769885 — cancer biology — Posted on 2019-10-18

1725 Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages

Siranosian, B. A.; Tamburini, F. B.; Sherlock, G. J.; Bhatt, A. S.

10.1101/460113 — microbiology — Posted on 2019-10-18

1726 Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.

Van Nostrand, E. L.; Pratt, G. A.; Yee, B. A.; Wheeler, E. C.; Blue, S. M.; Mueller, J.; Park, S. S.; Garcia, K. E.; Gelboin-Burkhart, C.; Nguyen, T. B.; Rabano, I.; Stanton, R.; Sundararaman, B.; Wang, R.; Fu, X.-D.; Graveley, B. R.; Yeo, G. W.

10.1101/807008 — genomics — Posted on 2019-10-18

1727 nkx3.2 mutant zebrafish accommodate jaw joint loss through a phenocopy of the head shapes of Paleozoic jawless fish

Miyashita, T.; Baddam, P.; Smeeton, J.; Oel, A. P.; Natarajan, N.; Gordon, B.; Palmer, A. R.; Crump, G.; Graf, D.; Allison, W. T.

10.1101/776351 — evolutionary biology — Posted on 2019-10-18

1728 An elusive endosymbiont: Does Wolbachia occur naturally in Aedes aegypti?

Ross, P. A.; Callahan, A. G.; Yang, Q.; Jasper, M.; Arif, A. K. M.; Afizah, A. N.; Nazni, W. A.; Hoffmann, A. A.

10.1101/798736 — ecology — Posted on 2019-10-18

1729 The hippocampus is critical for spatial relational attention

Ruiz, N. A.; Meager, M. R.; Agarwal, S.; Aly, M.

10.1101/765222 — neuroscience — Posted on 2019-10-18

1730 The interaction between elapsed time and decision accuracy differs between humans and rats

Shevinsky, C. A.; Reinagel, P.

10.1101/726703 — animal behavior and cognition — Posted on 2019-10-18

1731 Systematic Integration of Structural and Functional Data into Multi-Scale Models of Mouse Primary Visual Cortex

Billeh, Y. N.; Cai, B.; Gratiy, S. L.; Dai, K.; Iyer, R.; Gouwens, N. W.; Abbasi-Asl, R.; Jia, X.; Siegle, J. H.; Olsen, S. R.; Koch, C.; Mihalas, S.; Arkhipov, A.

10.1101/662189 — neuroscience — Posted on 2019-10-18

1732 Topoisomerase IIβ targets DNA crossovers formed between distant homologous sites to modulate chromatin structure and gene expression

Miyaji, M.; Furuta, R.; Hosoya, O.; Sano, K.; Hara, N.; Kuwano, R.; Kang, J.; Tateno, M.; Tsutsui, K. M.; Tsutsui, K.

10.1101/484956 — molecular biology — Posted on 2019-10-18

1733 The potentials and pitfalls of a human cervical organoid model including Langerhans cells

Jackson, R.; Lukacs, J. D.; Zehbe, I.

10.1101/733501 — cell biology — Posted on 2019-10-18

1734 Predicting the prognosis of non-small cell lung cancer by integrating microarray and clinical data with deep learning

Lai, Y.-H.; Chen, W.-N.; Hsu, T.-C.; Lin, C.; Tsao, Y.; Wu, S.

10.1101/656140 — bioinformatics — Posted on 2019-10-18

1735 How long is long enough? Decreasing on plant extract lethal effects over time affects Aedes aegypti larvae mortality

Simoes, D. A.; Cozzer, G.; Rezende, R. d. S.; Lutinski, J. A.; Junior, W. A. R.; Busato, M. A.; Dal Magro, J.

10.1101/808980 — synthetic biology — Posted on 2019-10-17

1736 Mapping and DNA sequence characterisation of the Rysto locus conferring extreme virus resistance to potato cultivar ‘White Lady’

Kondrak, M.; Kopp, A.; Uri, C.; Sos-Hegedus, A.; Csakvari, E.; Schiller, M.; Barta, E.; Cernak, I.; Polgar, Z.; Taller, J.; Banfalvi, Z.

10.1101/809152 — plant biology — Posted on 2019-10-17

1737 Ablation of Arf-expressing cells ameliorates cigarette smoke-induced lung dysfunction in mice.

Mikawa, R.; Sato, T.; Suzuki, Y.; Baskoro, H.; Sugimoto, M.

10.1101/809160 — physiology — Posted on 2019-10-17

1738 TLR2 signaling pathway combats Streptococcus uberis infection by inducing production of mitochondrial reactive oxygen species

Li, B.; Wan, Z.; Wang, Z.; Zuo, J.; Xu, Y.; Han, X.; Phouthapane, V.; Miao, J.

10.1101/809186 — pathology — Posted on 2019-10-17

1739 Evaluating spatiotemporal integration of shape cues

Greene, E.; Burchfield, T.

10.1101/809103 — neuroscience — Posted on 2019-10-17

1740 {-}{-} Downregulation of a satiety signal from peripheral fat bodies improves visual attention while reducing sleep need in Drosophila .

Ertekin, D.; Kirszenblat, L.; Faville, R.; van Swinderen, B.

10.1101/808998 — neuroscience — Posted on 2019-10-17

1741 Alzheimers Disease risk modifier genes do not impact tau aggregate uptake, seeding or maintenance in cell models

Diamond, M. I.; Kolay, S.

10.1101/809137 — molecular biology — Posted on 2019-10-17

1742 Isolation of the Astacin-like metalloprotease coding gene (astl) and assessment of its insecticidal activity against Spodoptera littoralis and Sitophilus oryzae

Diab, M. R.; Hussein, I. H. A.; Ahmed, M. M.; Mohammed, A.

10.1101/809178 — molecular biology — Posted on 2019-10-17

1743 Genetic determinants of multi-drug resistance in Acinetobacter baumannii at an academic hospital in Pretoria, South Africa

Nogbou, N.-D.; Phofa, D. T.; Nchabeleng, M.; Musyoki, A. M.

10.1101/809129 — microbiology — Posted on 2019-10-17

1744 Potential Outbreak in Brazil by Equine Herpesvirus Type 2 (EHV-2): Detection, Clinical and Genetic Analysis of Equine Gammaherpesvirus 2.

Campos, A. C. A.; Cicolo, S.; Monteiro de Oliveira, C.; Poltronieri, T.; Bentim Goes, L. G.; Barbosa da Silveira, V.; Barbosa, C. M.; Arantes Baccarin, R. Y.; Oliveira, D. B. L.; Belli, C. B.; Durigon, E. L.

10.1101/809053 — microbiology — Posted on 2019-10-17

1745 Path integration in large-scale space and with novel geometries: Comparing Vector Addition and Encoding-Error Models

Harootonian, S.; Wilson, R. C.; Hejtmanek, L.; Ziskin, E.; Ekstrom, A.

10.1101/809012 — animal behavior and cognition — Posted on 2019-10-17

1746 Expressional artifact caused by a co-injection marker rol-6 in C. elegans

Jin, H.; Emmons, S. W.; Kim, B.

10.1101/809145 — genetics — Posted on 2019-10-17

1747 Breeding behaviour and productivity of Black-necked crane (Grus nigricolis) in Ladakh, Indian Trans-Himalaya

Khan, A.; Chandan, P.; Ahmed, T.

10.1101/809095 — ecology — Posted on 2019-10-17

1748 Big data reveals fewer recombination hotspots than expected in human genome

Hao, Z.; Li, H.

10.1101/809020 — genetics — Posted on 2019-10-17

1749 The Swedish example of food animal production without extensive use of antibiotics - or \"healthy animals do not need antibiotics\".

Björkman, I.; Röing, M.; Eriksen, J.; Stalsby Lundborg, C.

10.1101/809079 — microbiology — Posted on 2019-10-17

1750 The itch-scratch reflex generates protective immunity

Radjavi, A.; LeBeau, A.-M.; McCoy, H. P.

10.1101/808477 — immunology — Posted on 2019-10-17

1751 High-quality chromosome-scale assembly of the walnut (Juglans regia L) reference genome

Marrano, A.; Britton, M.; Zaini, P. A.; Zimin, A.; Workman, R.; Puiu, D.; Bianco, L.; Di Pierro, E. A.; Allen, B.; Chakraborty, S.; Troggio, M.; Leslie, C.; Timp, W.; Dendekar, A.; Salzberg, S.; Neale, D. B.

10.1101/809798 — genomics — Posted on 2019-10-17

1752 Drug-tolerant idling melanoma cells exhibit theory-predicted metabolic low-low phenotype

Jia, D.; Paudel, B.; Hayford, C. E.; Hardeman, K.; Levine, H.; Onuchic, J. N.; Quaranta, V.

10.1101/809889 — systems biology — Posted on 2019-10-17

1753 Correction of Off-Targeting in CRISPR Screens Uncovers Genetic Dependencies in Melanoma Cells

Perez, A. R.; Sala, L.; Perez, R. K.; Vidigal, J. A.

10.1101/809970 — genomics — Posted on 2019-10-17

1754 Single-Cell RNA-Seq Reveals Endocardial Defect in Hypoplastic Left Heart Syndrome

Miao, Y.; Tian, L.; Martin, M.; Paige, S. L.; Galdos, F. X.; Li, J.; Guttman, A.; Wei, Y.; Moonen, J.-R.; Zhang, H.; Ma, N.; Zhang, B.; Grossfeld, P.; Mital, S.; Chitayat, D.; Wu, J. C.; Rabinovitch, M.; Nelson, T. J.; Nie, S.; Wu, S. M.; Gu, M.

10.1101/809731 — developmental biology — Posted on 2019-10-17

1755 In vivo deuterated water labeling followed by deuterium magnetic resonance imaging of xenografted tumors.

Assmann, J. C.; Brender, J. R.; Farthing, D. E.; Saito, K.; Warrick, K. A.; Maglakelidze, N.; Merkle, H.; Krishna, M. C.; Gress, R. E.; Buxbaum, N. P.

10.1101/809327 — cancer biology — Posted on 2019-10-17

1756 Involvement of orexin/hypocretin in the expression of social play behaviour in juvenile rats

Reppucci, C. J.; Gergely, C. K.; Bredewold, R.; Veenema, A. H.

10.1101/809475 — neuroscience — Posted on 2019-10-17

1757 Beyond generalization: Enhancing accurate interpretation of flexible models

Genkin, M.; Engel, T. A.

10.1101/808261 — neuroscience — Posted on 2019-10-17

Sherrill, S. P.; Timme, N. M.; Beggs, J. M.; Newman, E. L.

10.1101/809681 — neuroscience — Posted on 2019-10-17

1759 Neural clusters encoding curvature and corners emerged inmacaque V4

jiang, R.; Li, M.; Tang, S.

10.1101/808907 — neuroscience — Posted on 2019-10-17

1760 Formation of ultralong DH regions through genomic rearrangement

Smider, B. A.; Smider, V. V.

10.1101/809764 — immunology — Posted on 2019-10-17

1761 Salt-inducible kinases (SIKs) regulate TGFβ-mediated transcriptional and apoptotic responses

Hutchinson, L. D.; Darling, N. J.; Nicolaou, S.; Gori, I.; Squair, D. R.; Cohen, P.; Hill, C. S.; Sapkota, G. P.

10.1101/809228 — cancer biology — Posted on 2019-10-17

1762 Enhancer prediction in the human genome by probabilistic modeling of the chromatin feature patterns

Osmala, M.; Lähdesmäki, H.

10.1101/804625 — bioinformatics — Posted on 2019-10-17

1763 Broad and thematic remodeling of the surface glycoproteome on isogenic cells transformed with driving proliferative oncogenes

Leung, K. K.; Wilson, G. M.; Kirkemo, L. L.; Riley, N. M.; Coon, J. J.; Wells, J. A.

10.1101/808139 — biochemistry — Posted on 2019-10-17

1764 Association of SYNE2 variants in accelerating the progress of DYT1 early-onset isolated dystonia

Hu, C.-F.; Lee, F.-C.; Wu, S.-P.; Hsu, C.-S.; Huang, S.-M.; Hong, J.-S.

10.1101/807891 — genetics — Posted on 2019-10-17

1765 Investigating tissue-relevant causal molecular mechanisms of complex traits using probabilistic TWAS analysis

Chen, Y.; Quick, C.; Yu, K.; Barbeira, A.; The GTEx Consortium, ; Luca, F.; Pique-Regi, R.; Im, H. K.; Wen, X.

10.1101/808295 — genetics — Posted on 2019-10-17

1766 Soil microbial communities associated with giant sequoia: How does the world’s largest tree affect some of the world’s smallest organisms?

Carey, C. J.; Glassman, S. I.; Bruns, T. D.; Aronson, E. L.; Hart, S. C.

10.1101/807040 — ecology — Posted on 2019-10-17

1767 Interdependent allosteric FFA2R modulators synergistically induce functional selective activation and desensitization in neutrophils

Lind, S.; Holdfeldt, A.; Martensson, J.; Sundqvist, M.; Kenakin, T. P.; Bjorkman, L.; Forsman, H.; Dahlgren, C.

10.1101/809061 — pharmacology and toxicology — Posted on 2019-10-17

1768 State anxiety biases estimates of uncertainty during reward learning in volatile environments

Hein, T. P.; Weber, L. A.; de Fockert, J.; Herrojo Ruiz, M.

10.1101/809749 — neuroscience — Posted on 2019-10-17

1769 Synchrotron FTIR as a tool for studying populations and individual living cells of green algae

Goff, K. L.; Ellis, T.; Wilson, K. E.

10.1101/808220 — microbiology — Posted on 2019-10-17

1770 Power-Law Dynamics in Cortical Excitability as probed by Early Somatosensory Evoked Responses

Stephani, T.; Waterstraat, G.; Haufe, S.; Curio, G.; Villringer, A.; Nikulin, V. V.

10.1101/809285 — neuroscience — Posted on 2019-10-17

1771 Continuous force measurements reveal no inhibitory control deficits in Parkinson’s disease

Pickering, J. S.; McBride, J.; Leroi, I.; Poliakoff, E.

10.1101/809780 — neuroscience — Posted on 2019-10-17

1772 Diffuse X-ray Scattering from Correlated Motions in a Protein Crystal

Meisburger, S. P.; Case, D. A.; Ando, N.

10.1101/805424 — biophysics — Posted on 2019-10-17

1773 The plasma membrane as a competitive inhibitor and positive allosteric modulator of KRas4B signaling

Neale, C.; Garcia, A. E.

10.1101/809616 — biophysics — Posted on 2019-10-17

1774 Quasi-periodic migration of single cells on short microlanes

Zhou, F.; Schaffer, S. A.; Schreiber, C.; Segerer, F. J.; Goychuk, A.; Frey, E.; Raedler, J. O.

10.1101/809939 — biophysics — Posted on 2019-10-17

1775 Cascabel: a flexible, scalable and easy-to-use amplicon sequence data analysis pipeline

Abdala Asbun, A.; Besseling, M. A.; Balzano, S.; van Bleijswijk, J.; Witte, H.; Villanueva, L.; Engelmann, J. C.

10.1101/809384 — bioinformatics — Posted on 2019-10-17

1776 Auxin-dependent xyloglucan remodelling defines differential tissue expansion in Arabidopsis thaliana

Velasquez, S. M.; Gallemi, M.; Aryal, B.; Venhuizen, P.; Barbez, E.; Dünser, K.; Kalyna, M.; Mouille, G.; Benkova, E.; Bhalerao, R.; Kleine-Vehn, J.

10.1101/808964 — plant biology — Posted on 2019-10-17

1777 Structural Brain Imaging Studies Offer Clues about the Effects of the Shared Genetic Etiology among Neuropsychiatric Disorders

10.1101/809582 — neuroscience — Posted on 2019-10-17

1778 Topological inference from spontaneous activity structures in FMRI videos with peristence barcodes.

Don, A. P.; Peters, J. F.; Ramanna, S.; Tozzi, A.

10.1101/809293 — neuroscience — Posted on 2019-10-17

1779 Identification of putative effector genes across the GWAS Catalog using molecular quantitative trait loci from 68 tissues and cell types

Guo, C.; Sieber, K. B.; Esparza-Gordillo, J.; Hurle, M. R.; Song, K.; Yeo, A. J.; Yerges-Armstrong, L. M.; Johnson, T.; Nelson, M. R.

10.1101/808444 — genetics — Posted on 2019-10-17

1780 The unfolded protein response regulates pathogenic development of Ustilago maydis by Rok1-dependent inhibition of mating-type signaling

Schmitz, L.; Schwier, M. A.; Heimel, K.

10.1101/808717 — genetics — Posted on 2019-10-17

1781 Epistasis, inbreeding depression and the evolution of self-fertilization

Abu Awad, D.; Roze, D.

10.1101/809814 — evolutionary biology — Posted on 2019-10-17

1782 Area requirements to safeguard Earth’s marine species

Jones, K. R.; Klein, C. J.; Grantham, H. S.; Possingham, H. P.; Halpern, B. S.; Burgess, N. D.; Butchart, S. H. M.; Robinson, J. G.; Kingston, N.; Watson, J. E. M.

10.1101/808790 — ecology — Posted on 2019-10-17

1783 Conserved nuclear receptors controlling a novel trait target fast-evolving genes expressed in a single cell

Sieriebriennikov, B.; Sun, S.; Lightfoot, J. W.; Witte, H.; Moreno, E.; Rödelsperger, C.; Sommer, R. J.

10.1101/809350 — developmental biology — Posted on 2019-10-17

1784 A theory of actions and habits in free-operant behavior: The interaction of rate correlation and contiguity systems.

Perez, O. D.; Dickinson, A.

10.1101/807800 — animal behavior and cognition — Posted on 2019-10-17

1785 Call for participation: Collaborative benchmarking of functional-structural root architecture models. The case of root water uptake.

Schnepf, A.; Black, C. K.; Couvreur, V.; Delory, B. M.; Doussan, C.; Koch, A.; Koch, T.; Javaux, M.; Landl, M.; Leitner, D.; Lobet, G.; Mai, T. H.; Meunier, F.; Petrich, L.; Postma, J. A.; Priesack, E.; Schmidt, V.; Vanderborght, J.; Vereecken, H.; Weber, M.

10.1101/808972 — plant biology — Posted on 2019-10-17

1786 Ageing before birth: pace and stability of prenatal growth affect telomere dynamics

Stier, A.; Metcalfe, N. B.; Monaghan, P.

10.1101/809087 — physiology — Posted on 2019-10-17

1787 Eye movements predict test scores in online video education

Madsen, J.; Julio, S. U.; Gucik, P.; Steinberg, R.; Parra, L. C.

10.1101/809558 — neuroscience — Posted on 2019-10-17

1788 Sex differences in electrophysiological properties of mouse mPOA neurons revealed by in vitro whole-cell recordings

Zhang, W.; Li, S.-s.; Jiao, Z.-l.; Han, Y.; Wang, Z.-y.; Xu, X.-H.

10.1101/808592 — neuroscience — Posted on 2019-10-17

1789 Effective connectivity during autobiographical memory search

Nawa, N. E.; Ando, H.

10.1101/808501 — neuroscience — Posted on 2019-10-17

1790 ILF3 contributes to the establishment of the antiviral type I interferon program

Watson, S. F.; Bellora, N.; Macias, S.

10.1101/809608 — molecular biology — Posted on 2019-10-17

1791 Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank (n=408,317)

Campos, A. I.; Garcia-Marin, L. M.; Byrne, E. M.; Martin, N. G.; Partida, G. C.; Renteria, M. E.

10.1101/808691 — genomics — Posted on 2019-10-17

1792 In vivo CRISPR screening identifies RNF20/40 as epigenetic regulators of cardiomyocyte maturation

VanDusen, N. J.; Lee, J. Y.; Gu, W.; Sethi, I.; Zheng, Y.; King, J. S.; Zhou, P.-Z.; Suo, S.; Guo, Y.; Ma, Q.; Yuan, G.-C.; Pu, W. T.

10.1101/808402 — genetics — Posted on 2019-10-17

1793 Pegasus, a small extracellular peptide regulating the short-range diffusion of Wingless

Magny, E. G.; Pueyo Marques, J. I.; Bishop, S. A.; Aguilar-Hidalgo, D.; Couso, J. P.

10.1101/807701 — developmental biology — Posted on 2019-10-17

1794 Accurate contact-based modelling of repeat proteins predicts the structure of Curlin and SPW repeats.

Bassot, C.; Elofsson, A.

10.1101/809483 — bioinformatics — Posted on 2019-10-17

1795 Autopilot: Automating behavioral experiments with lots of Raspberry Pis.

Saunders, J. L.; Wehr, M.

10.1101/807693 — animal behavior and cognition — Posted on 2019-10-17

1796 Inferring the structures of signaling motifs from paired dynamic traces of single cells

Haggerty, R. A.; Purvis, J. E.

10.1101/809434 — systems biology — Posted on 2019-10-17

1797 Harm to others acts as a cingulate dependent negative reinforcer in rat

Hernandez Lallement, J.; Attach, A. T.; Gazzola, V.; Keysers, C.

10.1101/808949 — neuroscience — Posted on 2019-10-17

1798 Sample size evolution in neuroimaging research: an evaluation of highly-cited studies (1990-2012) and of latest practices (2017-2018) in high-impact journals

Szucs, D.; Ioannidis, J. P.

10.1101/809715 — neuroscience — Posted on 2019-10-17

1799 Reliability of single-subject neural activation patterns across speech production tasks

Frankford, S. A.; Nieto-Castanon, A.; Tourville, J. A.; Guenther, F. H.

10.1101/807925 — neuroscience — Posted on 2019-10-17

1800 Awake reactivation and suppression after brief task exposure depend on task novelty

Bang, J. W.; Rahnev, D.

10.1101/809574 — neuroscience — Posted on 2019-10-17

1801 RecA influences biofilm development in the opportunistic pathogen Acinetobacter baumannii

Ching, C.; Downs, M.; Muller, P.; Isley, B.; Fowle, W.; Godoy, V. G.

10.1101/809392 — microbiology — Posted on 2019-10-17

1802 Development of CRISPR-Cas13a-based antimicrobials capable of sequence-specific killing of target bacteria

Kiga, K.; Tan, X.-E.; Ibarra-Chavez, R.; Watanabe, S.; Aiba, Y.; Sato, Y.; Li, F.-Y.; Sasahara, T.; Cui, B.; Kawauchi, M.; Boonsiri, T.; Thitiananpakorn, K.; Taki, Y.; Azam, A. H.; Suzuki, M.; Penades, J. R.; Cui, L.

10.1101/808741 — microbiology — Posted on 2019-10-17

1803 Bread feeding is a robust and more physiological enteropathogen administration method compared to oral gavage

Derbise, A.; Echenique-Rivera, H.; Garcia-Lopez, M.; Beau, R.; Mattei, M.; Dersch, P.; Pizarro-Cerda, J.

10.1101/808832 — microbiology — Posted on 2019-10-17

1804 Multi-level analysis of reproduction in an Antarctic midge identifies female and male accessory gland products that are altered by larval stress and impact progeny viability

Finch, G.; Perrieta, C.; Davis, B.; Nandyal, S.; Rosendale, A. J.; Holmes, C. J.; Gantz, J. D.; Spacht, D.; Bailey, S. T.; Chen, X.; Oyen, K.; Didion, E. M.; Chakraborty, S.; Lee, R. E.; Denlinger, D. L.; Matter, S.; Attardo, G. M.; Weirauch, M. T.; Benoit, J.

10.1101/796797 — genomics — Posted on 2019-10-17

1805 Large DNA virus promoted the endosymbiotic evolution to make a photosynthetic eukaryote

10.1101/809541 — evolutionary biology — Posted on 2019-10-17

1806 Impact of upstream landslide on perialpine lake ecosystem: an assessment using multi-temporal satellite data

Villa, P.; Bresciani, M.; Bolpagni, R.; Braga, F.; Bellingeri, D.; Giardino, C.

10.1101/808824 — ecology — Posted on 2019-10-17

1807 A stable leading strand polymerase/clamp loader complex is required for normal and perturbed eukaryotic DNA replication

Stokes, K.; Winczura, A.; Song, B.; De Piccoli, G.; Grabarczyk, D. B.

10.1101/808840 — biochemistry — Posted on 2019-10-17

1808 Protein Interactome of the Cancerous Inhibitor of Protein Phosphatase 2A (CIP2A) in Th17 Cells

Khan, M. M.; Valikangas, T.; Khan, M. H.; Moulder, R.; Ullah, U.; Bhosale, S. D.; Komsi, E.; Butt, U.; Qiao, X.; Westermarck, J.; Elo, L. L.; Lahesmaa, R.

10.1101/809459 — systems biology — Posted on 2019-10-17

1809 A two-way molecular dialogue between embryo and endosperm required for seed development

Doll, N. M.; Royek, S.; Fujita, S.; Okuda, S.; Stintzi, A.; Widiez, T.; Hothorn, M.; Schaller, A.; Geldner, N.; Ingram, G.

10.1101/809368 — plant biology — Posted on 2019-10-17

1810 The paternally imprinted gene Snord116 regulates cortical neuronal activity

Pace, M.; Colombi, I.; Falappa, M.; Freschi, A.; Bandarabadi, M.; Armirotti, A.; Encarnacion, B. M.; Adamantidis, A. R.; Roberto, A.; Cerri, M.; Chiappalone, M.; Tucci, V.

10.1101/809822 — neuroscience — Posted on 2019-10-17

1811 Hypermutator Pseudomonas aeruginosa exploits multiple genetic pathways to develop multidrug resistance during long term infections in the airways of cystic fibrosis patients

Colque, C. A.; Albarracin Orio, A.; Feliziani, S.; Marvig, R. L.; Tobares, R. A.; Johansen, H. K.; Molin, S.; Smania, A. M.

10.1101/809319 — microbiology — Posted on 2019-10-17

1812 Accurate and Complete Genomes from Metagenomes

Chen, L.-X.; Anantharaman, K.; Shaiber, A.; Eren, A. M.; Banfield, J. F.

10.1101/808410 — microbiology — Posted on 2019-10-17

1813 Characterization of Arabidopsis thaliana promoter bidirectionality and antisense RNAs by depletion of nuclear RNA decay enzymes

Thiefry, A.; Bornholdt, J.; Ivanov, M.; Brodersen, P.; Sandelin, A.

10.1101/809194 — genomics — Posted on 2019-10-17

1814 Harvesting-induced evolution of collectivebehavior in a fish

Sbragaglia, V.; Klamser, P. P.; Romanczuk, P.; Arlinghaus, R.

10.1101/809442 — ecology — Posted on 2019-10-17

1815 A Shh/Gli-driven three-node timer motif controls temporal identity and fate of neural stem cells

Dias, J. M.; Alekseenko, Z.; Jeggari, A.; Boareto, M.; Vollmer, J.; Kozhevnikova, M.; Wang, H.; Matise, M. P.; Alexeyenko, A.; Iber, D.; Ericson, J.

10.1101/809418 — developmental biology — Posted on 2019-10-17

1816 Competence to epithelialise coincides with competence to differentiate in pluripotent cells

Lin, C.-Y.; Tatar, T.; Blin, G.; Malaguti, M.; Migueles, R. P.; Shao, H.; Chen, N.; Chambers, I.; Lowell, S.

10.1101/809467 — developmental biology — Posted on 2019-10-17

1817 Molecular profiling of lymphovascular invasive cancer cells in TNBC using G&T-seq

Zhu, Z.; Wang, W.; Lin, F.; Jordan, T.; Li, G.; Silverman, S.; Qiu, S.; Joy, A. A.; Chen, C.; Hockley, D.; Zhang, X.; Zhou, Q.; Postovit, L.-M.; Zhang, X.; Hou, Y.; Mackey, J. R.; Li, B.; Wong, G. K.-S.

10.1101/807156 — cancer biology — Posted on 2019-10-17

1818 A Wirelessly Powered Implantable CMOS Neural Recording Sensor Array using Pulse-based Neural Amplifier

Mulberry, G.; White, K. A.; Kim, B. N.

10.1101/809509 — bioengineering — Posted on 2019-10-17

1819 Data-Driven Analysis of a Mechanistic Model of CAR T Cell Signaling Predicts Effects of Cell-to-cell Heterogeneity

Cess, C. G.; Finley, S. D.

10.1101/808626 — systems biology — Posted on 2019-10-17

1820 Pathological circadian rhythm states driven by CK2 and noise

Malik, M. Z.; Fatima, Y.; Alam, M. J.; Singh, R. B.

10.1101/809632 — systems biology — Posted on 2019-10-17

1821 Building customizable auto-luminescent luciferase-based reporters in plants

Khakhar, A.; Starker, C.; Chamness, J.; Lee, N.; Imaizumi, T.; Voytas, D.

10.1101/809533 — plant biology — Posted on 2019-10-17

1822 Punishment insensitivity emerges from impaired contingency detection, not aversion insensitivity or reward dominance

Jean-Richard-dit-Bressel, P.; Ma, C.; Bradfield, L.; Killcross, S.; McNally, G.

10.1101/808873 — neuroscience — Posted on 2019-10-17

1823 Modeling behaviorally relevant neural dynamics enabled by preferential subspace identification (PSID)

Sani, O. G.; Pesaran, B.; Shanechi, M. M.

10.1101/808154 — neuroscience — Posted on 2019-10-17

1824 Deep brain stimulation modulates directional frontolimbic connectivity in obsessive-compulsive disorder

Fridgeirsson, E. A.; Figee, M.; Luigjes, J.; van den Munckhof, P.; Schuurman, P. R.; van Wingen, G.; Denys, D.

10.1101/809269 — neuroscience — Posted on 2019-10-17

1825 Stress-induced dendritic branching in C. elegans requires both common arborization effectors and stress-responsive molecular pathways.

Androwski, R. J.; Asad, N.; Wood, J. G.; Hofer, A.; Locke, S.; Smith, C. M.; Rose, B.; Schroeder, N. E.

10.1101/808337 — neuroscience — Posted on 2019-10-17

1826 The tip of the VgrG spike is essential to functional type VI secretion assembly in Acinetobacter baumannii

Lopez, J.; Ly, P. M.; Feldman, M. F.

10.1101/808725 — microbiology — Posted on 2019-10-17

1827 Polygenic risk modeling with latent trait-related genetic components

Aguirre, M.; Tanigawa, Y.; Venkataraman, G.; Tibshirani, R. j.; Hastie, T.; Rivas, M. A.

10.1101/808675 — genomics — Posted on 2019-10-17

1828 Matching cell lines with cancer type and subtype of origin via mutational, epigenomic and transcriptomic patterns

Salvadores, M.; Fuster-Tormo, F.; Supek, F.

10.1101/809400 — genomics — Posted on 2019-10-17

1829 Structural variation in Drosophila melanogaster spermathecal ducts and its association with sperm competition dynamics

Hopkins, B. R.; Sepil, I.; Wigby, S.

10.1101/808451 — evolutionary biology — Posted on 2019-10-17

1830 Does a passerine hibernate?

McNab, B. K.; Weston, K.

10.1101/808097 — ecology — Posted on 2019-10-17

1831 Nectins rather than E-cadherin anchor the actin belts at cell-cell junctions of epithelia

Mangeol, P.; Massey-Harroche, D.; Le Bivic, A.; Lenne, P.-F.

10.1101/809343 — cell biology — Posted on 2019-10-17

1832 Aspirin-mediated DKK-1 increase rescues Wnt-driven stem-like phenotype in human intestinal organoids

Dunbar, K.; Valanciute, A.; Rajasekaran, V.; Jamieson, T.; Freile Vinuela, P.; Lima, A.; Blackmur, J.; Ochocka-Fox, A.-M.; Arends, M. J.; Sansom, O. J.; Myant, K. B.; Farrington, S. M.; Dunlop, M. G.; Din, F. V. N.

10.1101/809517 — cancer biology — Posted on 2019-10-17

1833 Pseudo-repeats in doublecortin make distinct mechanistic contributions to microtubule regulation

Manka, S. W.; Moores, C. A.

10.1101/808899 — biophysics — Posted on 2019-10-17

1834 GenIE-Sys: Genome Integrative Explorer System

Mannapperuma, C.; Waterworth, J.; Street, N.

10.1101/808881 — bioinformatics — Posted on 2019-10-17

1835 DeCoDe: degenerate codon design for complete protein-coding DNA libraries

Shimko, T. C.; Fordyce, P. M.; Orenstein, Y.

10.1101/809004 — bioinformatics — Posted on 2019-10-17

1836 Direct observation of the setular web that fuses thoracopodal setae of a calanoid copepod into a collapsible fan

von Dassow, G.; Emlet, R. B.

10.1101/808196 — zoology — Posted on 2019-10-17

1837 A history-derived reward prediction error signal in ventral pallidum

Ottenheimer, D. J.; Bari, B. A.; Sutlief, E.; Fraser, K. M.; Kim, T. H.; Richard, J. M.; Cohen, J. Y.; Janak, P. H.

10.1101/807842 — neuroscience — Posted on 2019-10-17

1838 Predicting the fMRI signal fluctuation with echo-state neural networks trained on vascular network dynamics

Sobczak, F.; He, Y.; Sejnowski, T. J.; Yu, X.

10.1101/807966 — neuroscience — Posted on 2019-10-17

1839 Transcriptional Profiling of Primate Central Nucleus of the Amygdala Neurons to Understand the Molecular Underpinnings of Early Life Anxious Temperament

Kovner, R.; Souaiaia, T.; Fox, A. S.; French, D.; Goss, C. E.; Roseboom, P. H.; Oler, J. A.; Riedel, M. K.; Fekete, E. M.; Fudge, J. L.; Knowles, J. A.; Kalin, N. H.

10.1101/808279 — neuroscience — Posted on 2019-10-17

1840 Dynamic preferences account for inter-animal variability during the continual learning of a cognitive task

Kastner, D. B.; Miller, E. A.; Yang, Z.; Roumis, D. K.; Liu, D. F.; Frank, L. M.; Dayan, P.

10.1101/808006 — neuroscience — Posted on 2019-10-17

1841 LARP7 is a BRCA1 ubiquitinase substrate and regulates genome stability and tumorigenesis

Zhang, F.; Yan, P.; Yu, H.; Le, H.; li, Z.; Chen, J.; Liang, X.; Wang, S.; Wei, W.; Liu, L.; Zhang, Y.; Ji, X.; Xie, A.; Chen, W.; Han, Z.; Pu, W. T.; Chen, S.; Chen, Y.; Sun, K.; Ge, B.; zhang, B.

10.1101/808535 — molecular biology — Posted on 2019-10-17

1842 Legionella pneumophila infection and antibiotic treatment engenders a highly disturbed pulmonary microbiome with decreased microbial diversity

Perez-Cobas, A. E.; Ginevra, C.; Rusniok, C.; Jarraud, S.; Buchrieser, C.

10.1101/808238 — microbiology — Posted on 2019-10-17

1843 Phenotypic and Genotypic Antiviral Resistance Testing of HSV-1 Causing Recurrent Cutaneous Lesions in a Patient with DOCK8 Deficiency

Casto, A. M.; Stout, S. C.; Selvarangan, R.; Freeman, A. F.; Newell, B. D.; Stahl, E. D.; Greninger, A. L.; Yin, D. E.

10.1101/808303 — genomics — Posted on 2019-10-17

1844 Selective targeting of an oncogenic KRAS mutant allele by CRISPR/Cas9 induces efficient tumor regression

Gao, Q.; Ouyang, W.; Kang, B.; Han, X.; Xiong, Y.; Ding, R.; Li, Y.; Wang, F.; Huang, L.; Chen, L.; Wang, D.; DONG, X.; Zhang, Z.; Li, Y.; Ze, B.; HOU, Y.; Yang, H.; Ma, Y.; Gu, Y.; Chao, C.-C.

10.1101/807578 — genetics — Posted on 2019-10-17

1845 A toxic palmitoylation on Cdc42 drives a severe autoinflammatory syndrome

Bekhouche, B.; Tourville, A.; Ravichandran, Y.; Tacine, R.; Abrami, L.; Dussiot, M.; Khau-Dancasius, A.; Boccara, O.; Khirat, M.; Mangeney, M.; Bellon, N.; Fraitag, S.; Hadj-Rabia, S.; Blanche, S.; Puel, A.; Etienne-Manneville, S.; van der Goot, F. G.; Cherfils, J.; Hermine, O.; Casanova, J.-L.; Bodemer, C.; Smahi, A.; Delon, J.

10.1101/808782 — genetics — Posted on 2019-10-17

1846 Epigenetic gene silencing by heterochromatin primes fungal resistance

Torres-Garcia, S.; Audergon, P. N. C. B.; Shukla, M.; White, S. A.; Pidoux, A. L.; Allshire, R. C.

10.1101/808055 — genetics — Posted on 2019-10-17

1847 Quantifying The Individual Impact Of Artificial Barriers In Freshwaters: A Standardized And Absolute Index Of Genetic Connectivity

Prunier, J. G.; Poesy, C.; Dubut, V.; Veyssiere, C.; Loot, G.; Poulet, N.; Blanchet, S.

10.1101/809111 — ecology — Posted on 2019-10-17

1848 Optimized data representation and convolutional neural network model for predicting tumor purity

Sun, G. J.; Jenkins, D. F.; Cingolani, P. E.; Dry, J. R.; Lai, Z.

10.1101/805135 — bioinformatics — Posted on 2019-10-17

1849 Personalized Network Modeling of the Pan-Cancer Patient and Cell Line Interactome

Bhattacharyya, R.; Ha, M. J.; Liu, Q.; Akbani, R.; Liang, H.; Baladandayuthapani, V.

10.1101/806596 — bioinformatics — Posted on 2019-10-17

1850 An Adaptable Prosthetic Wrist Reduces Subjective Workload

Olsen, N. R.; George, J. A.; Brinton, M. R.; Paskett, M. D.; Kluger, D. T.; Tully, T. N.; Duncan, C. C.; Clark, G. A.

10.1101/808634 — bioengineering — Posted on 2019-10-17

1851 Dissecting the Roles of Mitochondrial Complex I Intermediate Assembly (MCIA) Complex Factors in the Biogenesis of Complex I

Formosa, L. E.; Muellner-Wong, L.; Reljic, B.; Sharpe, A. J.; Beilharz, T. H.; Lazarou, M.; Stroud, D. A.; Ryan, M. T.

10.1101/808311 — biochemistry — Posted on 2019-10-17

1852 Structural basis for adhesion G protein-coupled receptor Gpr126 function

Leon, K.; Cunningham, R.; Riback, J.; Feldman, E.; Li, J.; Sosnick, T.; Zhao, M.; Monk, K.; Arac, D.

10.1101/805515 — biochemistry — Posted on 2019-10-17

1853 Song overlapping, ambient noise and territorial aggression in great tits

Akcay, C.; Porsuk, Y. K.; Avsar, A.; Cabuk, D.; Bilgin, C. C.

10.1101/808733 — animal behavior and cognition — Posted on 2019-10-17

1854 An eco-physiological model coupling plant growth and aphid population dynamics

Zaffaroni, M.; Cunniffe, N. J.; Bevacqua, D.

10.1101/807941 — plant biology — Posted on 2019-10-17

1855 Mitochondrial Dysfunction Induces Epigenetic Dysregulation by H3K27 Hyperacetylation to Perturb Active Enhancers in Parkinson’s Disease Models

Huang, M.; Lou, D.; Charli, A.; Kong, D.; Jin, H.; Anantharam, V.; Kanthasamy, A.; Wang, Z.; Kanthasamy, A.

10.1101/808246 — neuroscience — Posted on 2019-10-17

1856 Overexpression of CD47 is associated with brain overgrowth in 16p11.2 deletion syndrome

Li, J.; Brickler, T.; Banuelos, A.; Marjon, K.; Bian, J.; Narayanan, C.; Weissman, I. L.; Chetty, S.

10.1101/808022 — neuroscience — Posted on 2019-10-17

1857 Topography, Spectral Characteristics, and Extra-to-Intracranial Propagation Pathways of EMG

Lahr, J.; Fiederer, L. D. J.; Glanz, O.; Schulze-Bonhage, A.; Ball, T.

10.1101/808253 — neuroscience — Posted on 2019-10-17

1858 Evolution of the acoustic startle response of Mexican cavefish

Paz, A.; McDole, B.; Kowalko, J. E.; Duboue, E. R.; Keene, A. C.

10.1101/809665 — neuroscience — Posted on 2019-10-17

1859 Semiparametric Partial Common Principal Component Analysis for Covariance Matrices

Wang, B.; Luo, X.; Zhao, Y.; Caffo, B. S.

10.1101/808527 — neuroscience — Posted on 2019-10-17

1860 Precise regulation of the relative rates of surface area and volume synthesis in dynamic environments

Shi, H.; Hu, Y.; Huang, K. C.

10.1101/806885 — microbiology — Posted on 2019-10-17

1861 Upon microbial challenge human neutrophils undergo rapid changes in nuclear architecture to orchestrate an immediate inflammatory gene program

Denholtz, M.; Zhu, Y.; Doehrmann, S.; He, Z.; Lu, H.; Isoda, T.; Nizet, V.; Murre, C.

10.1101/808568 — genomics — Posted on 2019-10-17

1862 When Two are Better than One: Modeling the Mechanisms of Antibody Mixtures

Einav, T.; Bloom, J. D.

10.1101/808394 — biophysics — Posted on 2019-10-17

1863 Chipper: Open-source software for semi-automated segmentation and analysis of birdsong and other natural sounds

Searfoss, A. M.; Pino, J. C.; Creanza, N.

10.1101/807974 — animal behavior and cognition — Posted on 2019-10-17

1864 KOPTIC: A novel approach for in silico prediction of enzyme kinetics and regulation

Saha, R.; Schroeder, W. L.

10.1101/807628 — systems biology — Posted on 2019-10-17

1865 Nickel induced transcriptional changes persist post exposure through epigenetic reprograming

Jose, C. C.; Wang, Z.; Tanwar, V. S.; Zhang, X.; Zang, C.; Cuddapah, S.

10.1101/806588 — systems biology — Posted on 2019-10-17

1866 Dynamics of apomictic and sexual reproduction during primary succession on a glacier forefield in the Swiss Alps

Sailer, C.; Stöcklin, J.; Grossniklaus, U.

10.1101/807651 — plant biology — Posted on 2019-10-17

1867 Functional analysis of phospholipase Dδ family in tobacco pollen tubes

Pejchar, P.; Sekeres, J.; Novotny, O.; Zarsky, V.; Potocky, M.

10.1101/807719 — plant biology — Posted on 2019-10-17

1868 A Brain to Spine Interface for Transferring Artificial Sensory Information

Yadav, A. P.; Li, D.; Nicolelis, M. A. L.

10.1101/807735 — neuroscience — Posted on 2019-10-17

1869 Pseudomonas two-partner secretion toxin Exolysin contributes to insect killing

Job, V.; Bouillot, S.; Gueguen, E.; Robert-Genthon, M.; Panchev, P.; Elsen, S.; Attree, I.

10.1101/807867 — microbiology — Posted on 2019-10-17

1870 See and Sequence: Integrating Whole-Genome Sequencing Within the National Antimicrobial Resistance Surveillance Program in the Philippines

Argimon, S.; Masim, M. A. L.; Gayeta, J. M.; Lagrada, M. L.; Macaranas, P. K. V.; Cohen, V.; Limas, M. T.; Espiritu, H. O.; Palarca, J. C.; Chilam, J.; Jamoralin, M. C.; Alfred, A. S.; Borlasa, J. B.; Olorosa, A. M.; Hernandez, L. F. T.; Boehme, K. D.; Jeffrey, B.; Abudahab, K.; Hufano, C. M.; Sia, S. B.; Stelling, J.; Holden, M. T. G.; Aanensen, D. M.; Carlos, C. C.; the Antimicrobial Resistance Surveillance Program,

10.1101/808378 — genomics — Posted on 2019-10-17

1871 A phenotypic screening platform utilising human spermatozoa identifies new compounds with contraceptive activity

Barratt, C. L.; Andrews, P.; Gruber, F.

10.1101/808105 — developmental biology — Posted on 2019-10-17

1872 Pinhole Optical Tweezers: Extending the Fluorescence Lifetime in the Presence of an Optical Trap by Wavefront Engineering

Zhang, Z.; Milstein, J. N.

10.1101/808352 — biophysics — Posted on 2019-10-17

1873 Feature selection for the classification of fall-risk in older subjects: a combinational approach using static force-plate measures

O'Reilly, D.

10.1101/807818 — bioinformatics — Posted on 2019-10-17

1874 Bacterial community profiling highlights complex diversity and novel organisms in wildlife ticks

Egan, S. L.; Loh, S.-M.; Banks, P. B.; Gillett, A.; Ahlstrom, L. A.; Ryan, U. M.; Irwin, P. J.; Oskam, C. L.

10.1101/807131 — microbiology — Posted on 2019-10-17

1875 A fibronectin mechanotransduction pathway translates segmentation clock oscillations into periodic somite formation

Gomes de Almeida, P.; Rifes, P.; Martins-Jesus, A. P.; Pinheiro, G. G.; Andrade, R. P.; Thorsteinsdottir, S.

10.1101/808121 — developmental biology — Posted on 2019-10-17

1876 manta - a clustering algorithm for weighted ecological networks

Röttjers, L.; Faust, K.

10.1101/807511 — bioinformatics — Posted on 2019-10-17

1877 Structural analysis of mycobacterial homoserine transacetylases central to methionine biosynthesis reveals druggable active site

Chaton, C. T.; Rodriguez, E. S.; Reed, R. W.; Li, J.; Kenner, C. W.; Korotkov, K. V.

10.1101/808071 — biochemistry — Posted on 2019-10-17

1878 Precise coupling of the thalamic head-direction system to hippocampal ripples.

Viejo, G.; Peyrache, A.

10.1101/809657 — neuroscience — Posted on 2019-10-17

1879 Mitochondrial-Y chromosome epistasis in Drosophila melanogaster

Agren, J. A.; Munasinghe, M.; Clark, A. G.

10.1101/807768 — evolutionary biology — Posted on 2019-10-17

1880 Optimal Multichannel Artifact Prediction and Removal for Brain Machine Interfaces and Neural Prosthetics

Sadeghi, M.; Chen, L.; Dutta, K.; Norris, A.; Feng, B.; Schnupp, J.; Rosskothen-Kuhl, N.; Read, H.; Escabi, M.

10.1101/809640 — neuroscience — Posted on 2019-10-17

1881 The cryo-EM structure of the bacterial flagellum cap complex suggests a molecular mechanism for filament elongation.

Al-Otaibi, N. S.; Taylor, A. J.; Farrell, D. P.; Tzokov, S. B.; DiMaio, F.; Kelly, D. J.; Bergeron, J. R. C.

10.1101/807677 — microbiology — Posted on 2019-10-17

1882 Partner-independent fusion gene detection by multiplexed CRISPR/Cas9 enrichment and long-read Nanopore sequencing

Stangl, C.; de Blank, S.; Renkens, I.; Verbeek, T.; Espejo Valle-Inclan, J.; Chamorro Gonzalez, R.; Henssen, A.; Roosmalen, M.; Stam, R.; Voest, E.; Kloosterman, W.; van Haaften, G.; Monroe, G.

10.1101/807545 — genomics — Posted on 2019-10-17

1883 Challenging conventional wisdom on the evolution of resistance to multi-drug HIV treatment: Lessons from data and modeling.

Feder, A. F.; Harper, K. N.; Pennings, P. S.

10.1101/807560 — evolutionary biology — Posted on 2019-10-17

1884 Nestin selectively facilitates the phosphorylation of the Lissencephaly-linked protein doublecortin (DCX) by cdk5/p35 to regulate growth cone morphology and Sema3a sensitivity in developing neurons

Bott, C. J.; Keil, J.; McMahon, L. P.; Yap, C. C.; Kwan, K.; Winckler, B.

10.1101/695155 — cell biology — Posted on 2019-10-17

1885 How do we segment text? Two-stage chunking operation in reading

Yang, J.; Cai, Q.; Tian, X.

10.1101/806190 — animal behavior and cognition — Posted on 2019-10-17

1886 Combining Crowdsourcing and Deep Learning to Assess Public Opinion on CRISPR-Cas9

Muller, M.; Schneider, M.; Salathe, M.; Vayena, E.

10.1101/802454 — scientific communication and education — Posted on 2019-10-17

1887 Simultaneous electrophysiological recording and fiber photometry in freely behaving mice

Patel, A. A.; McAlinden, N.; Mathieson, K.; Sakata, S.

10.1101/807602 — neuroscience — Posted on 2019-10-17

1888 Multi-taxon inventory reveals highly consistent biodiversity responses to ecospace variation

Brunbjerg, A. K.; Bruun, H. H.; Dalby, L.; Classen, A. T.; Flojgaard, C.; Froeslev, T. G.; Hansen, O. L. P.; Hoye, T. T.; Moeslund, J. E.; Svenning, J.-C.; Ejrnaes, R.

10.1101/807321 — ecology — Posted on 2019-10-17

1889 Matching the forecast horizon with the relevant ecologicalprocesses

Adler, P.; White, E.; Cortez, M.

10.1101/807057 — ecology — Posted on 2019-10-17

1890 Integrating multi-omics data with deep learning for predicting cancer prognosis

Chai, H.; Zhou, X.; Cui, Z.-f.; Rao, J.-h.; Hu, Z.; Lu, Y.-t.; Zhao, H.-y.; Yang, Y.-d.

10.1101/807214 — bioinformatics — Posted on 2019-10-17

1891 Characterizing the Cancer-Associated Microbiome with Small RNA Sequencing Data

Lee, W.-H.; Chen, K.-P.; Wang, K.; Huang, H.-C.; Juan, H.-F.

10.1101/807586 — bioinformatics — Posted on 2019-10-17

1892 Golden pompano genome and embryo transcriptome shed light on regulation of minor ZGA gene on heart and vascular development

LUo, H.; Zhang, Y.; Ji, C.; Zhao, Y.; Peng, J.; Huang, Y.; Liu, Q.; He, P.; Feng, P.; Yang, C.; Chen, X.; Yu, H.; Zheng, H.; Lin, Y.; Chen, X.

10.1101/804609 — genomics — Posted on 2019-10-17

1893 Synergistic effect: a common theme in mixed-species litter decomposition

Liu, J.; Liu, X.; Song, Q.; Luan, F.; Wang, H.; Hu, Y.; Yang, Q.

10.1101/807537 — ecology — Posted on 2019-10-17

1894 Introns Control Stochasticity in Metazoan Gene Expression

Sands, B.; Yun, S. R.; Mendenhall, A. R.

10.1101/746263 — systems biology — Posted on 2019-10-17

1895 A viral toolkit for recording transcription factor-DNA interactions in live mouse tissues

Cammack, A. J.; Moudgil, A.; Lagunas, T.; Chen, J.; Vasek, M. J.; Shabsovich, M.; McCullough, K.; He, J.; Chen, X.; Hooda, M.; Wilkinson, M. N.; Miller, T. M.; Mitra, R. D.; Dougherty, J. D.

10.1101/538504 — neuroscience — Posted on 2019-10-17

1896 The RNA Atlas, a single nucleotide resolution map of the human transcriptome

Lorenzi, L.; Chiu, H.-S.; Avila Cobos, F.; Gross, S.; Volders, P.-J.; Cannoodt, R.; Nuytens, J.; Vanderheyden, K.; Anckaert, J.; Lefever, S.; Goovaerts, T.; Hansen, T. B.; Kuersten, S.; Nijs, N.; Taghon, T.; Vermaelen, K.; Bracke, K. R.; Saeys, Y.; De Meyer, T.; Deshpande, N.; Anande, G.; Chen, T.-W.; Wilkins, M. R.; Unnikrishnan, A.; De Preter, K.; Kjems, J.; Koster, J.; Schroth, G. P.; Vandesompele, J.; Sumazin, P.; Mestdagh, P.

10.1101/807529 — genetics — Posted on 2019-10-17

1897 Files removed following a technical error

bioRxiv,

10.1101/777284 — physiology — Posted on 2019-10-17

1898 Opioids depress breathing through two small brainstem sites

Iris, B.; Wei, X. P.; Kish, E.; Yackle, K.

10.1101/807297 — physiology — Posted on 2019-10-17

1899 An EEG investigation of the trial-by-trial updating of complex knowledge structures

Richter, F. R.

10.1101/805887 — neuroscience — Posted on 2019-10-17

1900 SPINT2 inhibits proteases involved in activation of both influenza viruses and metapneumoviruses

Straus, M.; Kinder, J. T.; Segall, M.; Dutch, R. E.; Whittaker, G. R.

10.1101/752592 — microbiology — Posted on 2019-10-17

1901 Functionally-informed fine-mapping and polygenic localization of complex trait heritability

10.1101/807792 — genetics — Posted on 2019-10-17

1902 High throughput CRISPR screening identifies genes involved in macrophage viability and inflammatory pathways

Covarrubias, S.; Vollmers, A.; Capili, A.; Boettcher, M.; Robinson, E. K.; O'Briain, L.; Vollmers, C.; Blau, J.; McManus, M.; Carpenter, S.

10.1101/807164 — immunology — Posted on 2019-10-17

1903 Integrating citizen science data with expert surveys increases accuracy and spatial extent of species distribution models

Robinson, O. J.; Ruiz-Gutierrez, V.; Reynolds, M. D.; Golet, G. H.; Strimas-Mackey, M.; Fink, D.

10.1101/806547 — ecology — Posted on 2019-10-17

1904 Differential degradation of RNA species by autophagy related pathways in plants

Hickl, D.; Drews, F.; Girke, C.; Zimmer, D.; Muehlhaus, T.; Hauth, J.; Nordstroem, K.; Trentmann, O.; Neuhaus, E.; Fehlmann, T.; Keller, A.; Simon, M.; Moehlmann, T.

10.1101/793950 — plant biology — Posted on 2019-10-17

1905 Movement patterns of urban free-roaming dogs: implications for rabies control in Arequipa, Peru

Raynor, B.; De la Puente, M.; Johnson, A.; Diaz-Espinoza, E.; Levy, M. Z.; Castillo-Neyra, R.; Recuenco, S. E.

10.1101/684381 — ecology — Posted on 2019-10-17

1906 Co-ordinated Ras and Rac activity shapes macropinocytic cups and enables phagocytosis of geometrically diverse bacteria

Buckley, C. M.; Pots, H.; Gueho, A.; Phillips, B. A.; Gilsbach, B.; Traynor, D.; Nikolaev, A.; Soldati, T.; Parnell, A. J.; Kortholt, A.; King, J. S.

10.1101/763748 — cell biology — Posted on 2019-10-17

1907 Estimation and Validation of Individualized Dynamic Brain Models with Resting State fMRI

Singh, M.; Braver, T.; Cole, M.; Ching, S.

10.1101/678243 — neuroscience — Posted on 2019-10-17

1908 Linking high GC content to the repair of double strand breaks in prokaryotic genomes

Weissman, J. L.; Fagan, W. F.; Johnson, P. L. F.

10.1101/544924 — microbiology — Posted on 2019-10-17

1909 Methylthioadenosine is Not Dramatically Elevated in MTAP-Homozygous Deleted Primary Glioblastomas

10.1101/769885 — cancer biology — Posted on 2019-10-17

1910 Glucagon-like peptide-1 receptor agonist, exendin-4, reduces reinstatement of heroin seeking behavior in rats

Douton, J. E.; Augusto, C.; Stoltzfus, B. A.; Carkaci-Salli, N.; Vrana, K. E.; Grigson, P. S.

10.1101/730408 — animal behavior and cognition — Posted on 2019-10-17

1911 Valence and state-dependent population coding in dopaminergic neurons in the fly mushroom body

Siju, K. P.; Stih, V.; Aimon, S.; Gjorgjieva, J.; Portugues, R.; Grunwald Kadow, I. C.

10.1101/809277 — neuroscience — Posted on 2019-10-17

1912 A sparse, spatially biased subtype of mature granule cell is preferentially recruited in hippocampal-associated behaviors

Erwin, S. R.; Sun, W.; Copeland, M.; Lindo, S.; Spruston, N.; Cembrowski, M. S.

10.1101/804393 — neuroscience — Posted on 2019-10-17

1913 Emotionotopy in the Human Right Temporo-Parietal Cortex

Lettieri, G.; Handjaras, G.; Ricciardi, E.; Leo, A.; Papale, P.; Betta, M.; Pietrini, P.; Cecchetti, L.

10.1101/463166 — neuroscience — Posted on 2019-10-17

1914 A phenotypically plastic magic trait promoting reproductive isolation in sticklebacks?

Garduno-Paz, M.; Huntingford, F.; Garrett, S.; Adams, C.

10.1101/587675 — evolutionary biology — Posted on 2019-10-17

1915 Evolutionary analyses reveal independent origins of gene repertoires and structural motifs associated to fast inactivation in calcium-selective TRPV channels

Flores-Aldama, L.; Vandewege, M.; Zavala, K.; Colenso, C.; Gonzalez, W.; Brauchi, S.; Opazo, J. C.

10.1101/564997 — evolutionary biology — Posted on 2019-10-17

1916 Polygenic adaptation to an environmental shift: temporal dynamics of variation under Gaussian stabilizing selection and additive effects on a single trait

Thornton, K. R.

10.1101/505750 — evolutionary biology — Posted on 2019-10-17

1917 Modern human changes in regulatory regions implicated in cortical development

Moriano, J.; Boeckx, C.

10.1101/713891 — evolutionary biology — Posted on 2019-10-17

1918 Extracellular vesicles from therapeutic grade allogeneic human placental stromal cells induce angiogenesis and modulate immunity

Wolf, m.; Vari, B.; Bloechl, C.; Raninger, A. M.; Poupardin, R.; Beez, C. M.; Hoog, A.; Brachtl, G.; Eminger, E.; Binder, H. M.; Oeller, M.; Spittler, A.; Heuser, T.; Obermayer, A.; Seifert, M.; Huber, C. G.; Schallmoser, K.; Volk, H. D.; Strunk, D.

10.1101/808808 — cell biology — Posted on 2019-10-17

1919 Quantitative multiplexed proteomics of mouse microglia by flow-cytometric sorting reveals a core set of highly-abundant microglial proteins

Rayaprolu, S.; Xiao, H.; Ramesha, S.; Duong, D.; Dammer, E. B.; Lah, J. J.; Levey, A. I.; Seyfried, N. T.; Rangaraju, S.

10.1101/802694 — neuroscience — Posted on 2019-10-17

1920 From stress to depression: Development of extracellular matrix-dependent cognitive impairment following social stress

Koskinen, M.-K.; van Mourik, Y.; Smit, A. B.; Spijker, S.; Riga, D.

10.1101/806935 — neuroscience — Posted on 2019-10-17

1921 Representation of Distance and Direction of Nearby Boundaries in Retrosplenial Cortex

van Wijngaarden, J. B. G.; Babl, S. S.; Ito, H. T.

10.1101/807453 — neuroscience — Posted on 2019-10-17

1922 Using transcranial magnetic stimulation to map the cortical representation of lower-limb muscles

Davies, J. L.

10.1101/807339 — neuroscience — Posted on 2019-10-17

1923 The Flexiscope: a Low Cost, Flexible, Convertible, and Modular Microscope with Automated Scanning and Micromanipulation.

Courtney, A.; Alvey, L. M.; Merces, G. O. T.; Pickering, M.

10.1101/442210 — neuroscience — Posted on 2019-10-17

1924 LITESEC-T3SS - Light-controlled protein delivery into eukaryotic cells with high spatial and temporal resolution

Lindner, F.; Milne-Davies, B.; Langenfeld, K.; Diepold, A.

10.1101/807461 — microbiology — Posted on 2019-10-17

1925 Reference transcriptome data in silkworm, Bombyx mori

Yokoi, K.; Tsubota, T.; Jianqiang, S.; Joraku, A.; Sezutsu, H.; Bono, H.

10.1101/805978 — genomics — Posted on 2019-10-17

1926 Cdc42 GTPase regulates ESCRTs in nuclear envelope sealing and ER remodeling

Lu, M.; Drubin, D. G.

10.1101/808436 — cell biology — Posted on 2019-10-17

1927 Analytical investigation of non-Fickian receptor-mediated endocytosis

Rismanian, M.; Damirchi, B.

10.1101/808212 — cell biology — Posted on 2019-10-17

1928 Recovery of gene haplotypes from a metagenome

Nicholls, S. M.; Aubrey, W.; Edwards, A.; de Grave, K.; Huws, S.; Schietgat, L.; Soares, A.; Creevey, C. J.; Clare, A.

10.1101/223404 — bioinformatics — Posted on 2019-10-17

1929 The microevolutionary response to male-limited X-chromosome evolution in Drosophila melanogaster reflects macroevolutionary patterns

Abbott, J. K.; Chippindale, A. K.; Morrow, E. H.

10.1101/800672 — evolutionary biology — Posted on 2019-10-17

1930 An elusive endosymbiont: Does Wolbachia occur naturally in Aedes aegypti?

Ross, P. A.; Callahan, A. G.; Yang, Q.; Jasper, M.; Arif, A. K. M.; Nazni, W. A.; Hoffmann, A. A.

10.1101/798736 — ecology — Posted on 2019-10-17

1931 CLASP mediates microtubule repair by promoting tubulin incorporation into damaged lattices

Aher, A.; Rai, D.; Schaedel, L.; Gaillard, J.; John, K.; Blanchoin, L.; Thery, M.; Akhmanova, A.

10.1101/809251 — cell biology — Posted on 2019-10-17

1932 Neural signatures of loss of consciousness and its recovery by thalamic stimulation.

Donoghue, J.; Bastos, A. M.; Yanar, J.; Kornblith, S.; Mahnke, M.; Brown, E. N.; Miller, E. K.

10.1101/806687 — neuroscience — Posted on 2019-10-17

1933 Succession of physiological stages hallmarks the transcriptomic response of fungus Aspergillus niger to lignocellulose

van Munster, J. M.; Daly, P.; Blythe, M. J.; Ibbett, R.; Kokolski, M.; Gaddipati, S.; Lindquist, E.; Singan, V. R.; Barry, K. W.; Lipzen, A. M.; Ngan, C. Y.; Petzold, C. J.; Chan, L. J. G.; Arvas, M.; Raulo, R.; Pullan, S. T.; Delmas, S.; Grigoriev, I. V.; Tucker, G. A.; Simmons, B. A.; Archer, D. B.

10.1101/806356 — microbiology — Posted on 2019-10-17

1934 An engineered CRISPR/Cas9 mouse line for simultaneous readout of lineage histories and gene expression profiles in single cells

Bowling, S.; Sritharan, D.; Osorio, F. G.; Nguyen, M.; Cheung, P.; Rodriguez-Fraticelli, A.; Patel, S.; Fujiwara, Y.; Li, B. E.; Orkin, S. H.; Hormoz, S.; Camargo, F. D.

10.1101/797597 — developmental biology — Posted on 2019-10-17

1935 Phosphorylation of the ancestral histone variant H3.3 amplifies stimulation-induced transcription

Armache, A.; Yang, S.; Robbins, L. E.; Durmaz, C.; Daman, A. W.; Jeong, J. Q.; Martinez de Paz, A.; Ravishankar, A.; Arslan, T.; Lin, S.; Panchenko, T.; Garcia, B. A.; Hake, S.; Li, H.; Allis, C. D.; Josefowicz, S. Z.

10.1101/808048 — biochemistry — Posted on 2019-10-17

1936 (p)ppGpp directly regulates translation initiation during entry into quiescence

Diez, S.; Ryu, J.; Caban, K.; Gonzalez, R. L.; Dworkin, J.

10.1101/807917 — microbiology — Posted on 2019-10-17

1937 Anatomically remote education of B cells is required for colonic health

Surana, N.; Couter, C. J.; Alvarez, D.; von Andrian, U. H.; Kasper, D. L.

10.1101/806497 — immunology — Posted on 2019-10-17

1938 Computational approach to identifying universal macrophage biomarker

Dang, D.; Taheri, S.; Das, S.; Prince, L. A.; Ghosh, P.; Sahoo, D.

10.1101/807347 — immunology — Posted on 2019-10-17

1939 Complex Autoinflammatory Syndrome Unveils Fundamental Principles of JAK1 Transcriptional and Biochemical Function

Gruber, C. N.; Calis, J.; Buta, S.; Evrony, G.; Martin, J. C.; Uhl, S.; Caron, R.; Jarchin, L.; Dunkin, D.; Phelps, R.; Webb, B. D.; Saland, J.; Merad, M.; Orange, J.; Mace, E. M.; Rosenberg, B. R.; Gelb, B.; Bogunovic, D.

10.1101/807669 — immunology — Posted on 2019-10-17

1940 An activity-guided map of electrophile-cysteine interactions in primary human immune cells

Vinogradova, E.; Lazar, D.; Suciu, R.; Wang, Y.; Bianco, G.; Yamashita, Y.; Crowley, V.; Remillard, D.; Lum, K.; Simon, G.; Kemper, E.; Lazear, M.; Yin, S.; Blewett, M.; Dix, M.; Nguyen, N.; Shokhirev, M.; Chin, E.; Lairson, L.; Forli, S.; Teijaro, J.; Cravatt, B.

10.1101/808113 — immunology — Posted on 2019-10-17

1941 The human CD8 T stem cell-like memory phenotype appears in the acute phase in Yellow Fever virus vaccination

Fuertes Marraco, S. A.; Bovay, A.; Nassiri, S.; Maby-El Hajjami, H.; Ouertatani-Sakouhi, H.; Held, W.; Speiser, D. E.

10.1101/808774 — immunology — Posted on 2019-10-17

1942 Dalbavancin and wound healing: new evidences/insights in a mouse model of skin infection.

Simonetti, O.; Lucarini, G.; Morroni, G.; Orlando, F.; Lazzarini, R.; Zizzi, A.; Brescini, L.; Provinciali, M.; Giacometti, A.; Offidani, A.; Cirioni, O.

10.1101/805895 — pharmacology and toxicology — Posted on 2019-10-17

1943 The BSGatlas: An enhanced annotation of genes and transcripts for the Bacillus subtilis genome with improved information access

Geissler, A. S.; Anthon, C.; Gonzalez-Tortuero, E.; Poulsen, L. D.; Kallehauge, T. B.; Seemann, S. E.; Vinther, J.; Gorodkin, J.

10.1101/807263 — genomics — Posted on 2019-10-17

1944 SapTrap assembly of C. elegans MosSCI transgene vectors

Fan, X.; Henau, S. D.; Feinstein, J.; Miller, S. I.; Han, B.; Frokjaer-Jensen, C.; Griffin, E. E.

10.1101/805507 — genetics — Posted on 2019-10-17

1945 A curated database reveals trends in single-cell transcriptomics

Svensson, V.; da Veiga Beltrame, E.; Pachter, L.

10.1101/742304 — genomics — Posted on 2019-10-17

1946 Fetal liver hepcidin supports acquisition of iron stores in utero

Kammerer, L.; Mohammad, G.; Wolna, M.; Robbins, P.; Lakhal-Littleton, S.

10.1101/799304 — developmental biology — Posted on 2019-10-17

1947 Embryonic organoids recapitulate early heart organogenesis

Rossi, G.; Boni, A.; Guiet, R.; Girgin, M.; Kelly, R. G.; Lutolf, M. P.

10.1101/802181 — developmental biology — Posted on 2019-10-17

1948 StrainPro: a highly accurate Metagenomic strain-level profiling tool

Lin, H.-N.; Lin, Y.-L.; Hsu, W.-L.

10.1101/807149 — bioinformatics — Posted on 2019-10-17

1949 DeepImageJ: A user-friendly plugin to run deep learning models in ImageJ

Gomez-de-Mariscal, E.; Garcia-Lopez-de-Haro, C.; Donati, L.; Unser, M.; Munoz-Barrutia, A.; Sage, D.

10.1101/799270 — bioengineering — Posted on 2019-10-17

1950 Evaluation of longitudinal time-lapsed in vivo micro-CT for monitoring fracture healing in mouse femur defect models

Wehrle, E.; Tourolle ne Betts, D. C.; Kuhn, G. A.; Scheuren, A. C.; Hofmann, S.; Mueller, R.

10.1101/692343 — bioengineering — Posted on 2019-10-17

1951 Differences in the chitinolytic activity of mammalian chitinases on soluble and crystalline substrates

Barad, B. A.; Liu, L.; Diaz, R. E.; Basilio, R.; Van Dyken, S. J.; Locksley, R. M.; Fraser, J. S.

10.1101/762336 — biochemistry — Posted on 2019-10-17

1952 Architectural analyses of tree forking habit with single-image photogrammetry: a case study of post-mature temperate oaks

Kedra, K. W.

10.1101/795286 — plant biology — Posted on 2019-10-17

1953 An Optimization framework for Nonspiking Neuronal Networks and Aided Discovery of a Model for the Elementary Motion Detector

Banerjee, A.

10.1101/666149 — neuroscience — Posted on 2019-10-17

1954 Selective 40S footprinting reveals that scanning ribosomes remain cap-tethered in human cells

Bohlen, J.; Fenzl, K.; Kramer, G.; Bukau, B.; Teleman, A. A.

10.1101/806364 — molecular biology — Posted on 2019-10-17

1955 A sorghum Practical Haplotype Graph facilitates genome-wide imputation and cost-effective genomic prediction

Jensen, S. E.; Charles, J. R.; Muleta, K.; Bradbury, P.; Casstevens, T.; Deshpande, S. P.; Gore, M. A.; Gupta, R.; Ilut, D. C.; Johnson, L.; Lozano, R.; Miller, Z.; Ramu, P.; Rathore, A.; Romay, M. C.; Upadhyaya, H. D.; Varshney, R. K.; Morris, G. P.; Pressoir, G.; Buckler, E. S.; Ramstein, G. P.

10.1101/775221 — genomics — Posted on 2019-10-17

1956 Cell type specific genetic regulation of gene expression across human tissues

Kim-Hellmuth, S.; Aguet, F.; Oliva, M.; Munoz-Aguirre, M.; Wucher, V.; Kasela, S.; Castel, S. E.; Hamel, A.; Vinuela, A.; Roberts, A. L.; Mangul, S.; Wen, X.; Wang, G.; Barbeira, A.; Garrido-Martin, D.; Nadel, B.; Zou, Y.; Bonazzola, R.; Quan, J.; Brown, A.; Martinez-Perez, A.; Soria, J. M.; The GTEx Consortium, ; Getz, G.; Dermitzakis, E.; Small, K. S.; Stephens, M.; Xi, H. S.; Im, H. K.; Guigo, R.; Segre, A.; Stranger, B.; Ardlie, K.; Lappalainen, T.

10.1101/806117 — genomics — Posted on 2019-10-17

1957 Asymmetric gene flow causes cascading reproductive isolation

Ostevik, K. L.; Rifkin, J. L.; Xia, H.; Rausher, M. D.

10.1101/767970 — evolutionary biology — Posted on 2019-10-17

1958 A native prokaryotic voltage-dependent calcium channel with a novel selectivity filter sequence

Shimomura, T.; Yonekawa, Y.; Nagura, H.; Tateyama, M.; Fujiyoshi, Y.; Irie, K.

10.1101/783647 — biophysics — Posted on 2019-10-17

1959 Chromatiblock: scalable whole-genome visual-ization of structural differences in prokaryotes

Sullivan, M. J.; van Bakel, H.

10.1101/800920 — bioinformatics — Posted on 2019-10-17

1960 Interaction between induced and natural variation at oil yellow1 delays flowering in maize

Khangura, R. S.; Venkata, B.; Marla, S.; Mickelbart, M.; Dhungana, S.; Braun, D.; Dilkes, B.; Johal, G.

10.1101/706846 — plant biology — Posted on 2019-10-17

1961 What do ossification sequences tell us about the origin of extant amphibians?

Laurin, M.; Lapauze, O.; Marjanovic, D.

10.1101/352609 — paleontology — Posted on 2019-10-17

1962 Longitudinal trajectories of brain age in young individuals at familial risk of mood disorder

de Nooij, L.; Harris, M. A.; Hawkins, E. L.; Shen, X.; Clarke, T.-K.; Chan, S. W. Y.; Ziermans, T. B.; McIntosh, A. M.; Whalley, H. C.

10.1101/537951 — neuroscience — Posted on 2019-10-17

1963 An Orthographic Prediction Error as the basis for efficient Visual Word Recognition

Gagl, B.; Sassenhagen, J.; Haan, S.; Gregorova, K.; Richlan, F.; Fiebach, C. J.

10.1101/431726 — neuroscience — Posted on 2019-10-17

1964 High Resolution Genome Wide Expression Analysis of Single Myofibers Using SMART-Seq

Blackburn, D. M.; Lazure, F.; Corchado, A. H.; Perkins, T. J.; Najafabadi, H. S.; Soleimani, V. D.

10.1101/724393 — molecular biology — Posted on 2019-10-17

1965 Selection following gene duplication shapes recent genome evolution in the pea aphid Acyrthosiphon pisum

Fernandez, R.; Marcet-Houben, M.; Legeai, F.; Richard, G.; Robin, S.; Wucher, V.; Pegueroles, C.; Gabaldon, T.; Tagu, D.

10.1101/643544 — genomics — Posted on 2019-10-17

1966 Recommendations for application of the functional evidence PS3/BS3 criterion using the ACMG/AMP sequence variant interpretation framework

Brnich, S. E.; Abou Tayoun, A. N.; Couch, F. J.; Cutting, G. R.; Greenblatt, M. S.; Heinen, C. D.; Kanavy, D. M.; Luo, X.; McNulty, S. M.; Starita, L. M.; Tavtigian, S. V.; Wright, M. W.; Harrison, S. M.; Biesecker, L. G.; Berg, J. S.

10.1101/709428 — genetics — Posted on 2019-10-17

1967 Phylogenetic conflicts, combinability, and deep phylogenomics in plants

Smith, S. A.; Walker, J. F.; Brown, J.; Walker-Hale, N.

10.1101/371930 — evolutionary biology — Posted on 2019-10-17

1968 Public health in genetic spaces: a statistical framework to optimize cluster-based outbreak detection

Chato, C.; Kalish, M.; Poon, A.

10.1101/639997 — epidemiology — Posted on 2019-10-17

1969 Integrin-alpha-6+ Stem Cells (ISCs) are responsible for whole body regeneration in a basal chordate

Kassmer, S. H.; Langenbacher, A. D.; De Tomaso, A. W.

10.1101/647578 — developmental biology — Posted on 2019-10-17

1970 Genetic Heterogeneity Profiling by Single Cell RNA Sequencing

Zhou, Z.; Zhang, N. R.; Xu, B.; Minn, A.

10.1101/457622 — bioinformatics — Posted on 2019-10-17

1971 Top-down feature-based cueing modulates conflict-specific ERP components in a Stroop-like task with equiprobable conditions

Siemann, J.; Galashan, D.; Herrmann, M.

10.1101/807412 — neuroscience — Posted on 2019-10-16

1972 Inter-reader agreement of 18F-FDG PET/CT for the quantification of carotid artery plaque inflammation

Johnsrud, K.; Seierstad, T.; Russell, D.; Revheim, M.-E.

10.1101/807420 — pathology — Posted on 2019-10-16

1973 Normative Data for an Expanded Set of Stimuli for Testing High-Level Influences on Object Perception: OMEFA-II

Flowers, C. S.; Orsten-Hooge, K. D.; Jannuzi, B. G. L.; Peterson, M. A.

10.1101/807446 — neuroscience — Posted on 2019-10-16

1974 Atypical Structural Tendencies Among Low-Complexity Domains in the Protein Data Bank Proteome

Cascarina, S. M.; Elder, M. R.; Ross, E. D.

10.1101/807438 — bioinformatics — Posted on 2019-10-16

1975 PATTIE: Publication access through tiered interaction & exploration

Ortiz, M. S.; Wang, M.; Seki, K.; Kim, H.; Mostafa, J.

10.1101/807404 — scientific communication and education — Posted on 2019-10-16

1976 Genetic design automation for autonomous formation of multicellular shapes from a single cell progenitor

Appleton, E.; Mehdipour, N.; Daifuku, T.; Briers, D.; Haghighi, I.; Moret, M.; Chao, G.; Wannier, T.; Chiappino-Pepe, A.; Belta, C.; Church, G. M.

10.1101/807107 — synthetic biology — Posted on 2019-10-16

1977 miR-181a Regulates p62/SQSTM1, Parkin and Protein DJ-1 Promoting Mitochondrial Dynamics in Skeletal Muscle Ageing

Goljanek-Whysall, K.; Soriano-Arroquia, A.; McCormick, R.; Chinda, C. A.; McDonagh, B.

10.1101/805176 — physiology — Posted on 2019-10-16

1978 Deaminase associated single nucleotide variants in blood and saliva-derived exomes from healthy subjects

Hall, N. E.; Mamrot, J.; Frampton, C. M. A.; Read, P.; Steele, E. J.; Bischof, R. J.; Lindley, R. A.

10.1101/807073 — genomics — Posted on 2019-10-16

1979 A meta-analysis of global avian survival across species and latitude

Scholer, M. N.; Strimas-Mackey, M.; Jankowski, J. E.

10.1101/805705 — ecology — Posted on 2019-10-16

1980 Integrated Proteomics Reveals Brain-Based Cerebrospinal Fluid Biomarkers in Asymptomatic and Symptomatic Alzheimer’s Disease

Higginbotham, L.; Ping, L.; Dammer, E. B.; Duong, D. M.; Zhou, M.; Gearing, M.; Johnson, E. C. B.; Hajjar, I.; Lah, J. J.; Levey, A. I.; Seyfried, N. T.

10.1101/806752 — systems biology — Posted on 2019-10-16

1981 The cold and the drought: effects of extreme weather events on Stem Carbon dynamic in a Mediterranean beech forest

D'Andrea, E.; Rezaie, N.; Prislan, P.; Muhr, J.; Collalti, A.; Matteucci, G.; Gricar, J.

10.1101/806026 — physiology — Posted on 2019-10-16

1982 Broad binaural fusion impairs segregation of speech based on voice pitch differences in a cocktail party environment

Oh, Y.; Hartling, C. L.; Srinivasan, N. K.; Eddolls, M.; Diedesch, A. C.; Gallun, F. J.; Reiss, L. A. J.

10.1101/805309 — neuroscience — Posted on 2019-10-16

1983 Ability of Bicarbonate Supplementation to Sensitize Selected Methicillin-Resistant Staphylococcus aureus (MRSA) Strains to β-Lactam Antibiotics in an Ex Vivo Simulated Endocardial Vegetation Model

Rose, W. E.; Bienvenida, A. M.; Xiong, Y. Q.; Chambers, H. F.; Bayer, A.; Ersoy, S. C.

10.1101/807255 — microbiology — Posted on 2019-10-16

1984 The Development, Function, and Plasticity of the Immune Macroenvironment in Cancer

Allen, B. M.; Hiam, K. J.; Burnett, C. E.; Venida, A.; DeBarge, R.; Carmi, Y.; Spitzer, M. H.

10.1101/805473 — immunology — Posted on 2019-10-16

1985 Dynamic Transcriptome, Accessible Genome and PGR Cistrome Profiles in the Human Myometrium

Wu, S.-P.; Anderson, M. L.; Wang, T.; Zhou, L.; Emery, O. M.; Li, X.; DeMayo, F. J.

10.1101/806950 — genomics — Posted on 2019-10-16

1986 DeepImageJ: A user-friendly plugin to run deep learning models in ImageJ

Gomez de Mariscal, E.; Garcia-Lopez-de-Haro, C.; Donati, L.; Unser, M.; Munoz-Barrutia, A.; Sage, D.

10.1101/799270 — bioengineering — Posted on 2019-10-16

1987 Beyond traditional biodiversity fish monitoring: environmental DNA metabarcoding and simultaneous underwater visual census detect different sets of a complex fish community at a marine biodiversity hotspot

Valdivia-Carrillo, T.; Rocha-Olivares, A.; Reyes-Bonilla, H.; Dominguez-Contreras, J. F.; Munguia-Vega, A.

10.1101/806729 — genomics — Posted on 2019-10-16

1988 Demonstration of altruistic behaviour in rats

Das, U.; Kumari, A.; Sharma, S.; Laxmi, T. R.

10.1101/805481 — animal behavior and cognition — Posted on 2019-10-16

1989 Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.

10.1101/807008 — genomics — Posted on 2019-10-16

1990 Arabidopsis ENHANCED DISEASE RESISTANCE1 Protein Kinase Regulates the Association of ENHANCED DISEASE SUSCEPTIBILITY1 and PHYTOALEXIN DEFICIENT4 to Inhibit Cell Death

Neubauer, M.; Serrano, I.; Rodibaugh, N.; Bhandari, D. D.; Bautor, J.; Parker, J. E.; Innes, R. W.

10.1101/806802 — plant biology — Posted on 2019-10-16

1991 Cerebellar-recipient motor thalamus drives behavioral context-specific movement initiation

Dacre, J.; Colligan, M.; Ammer, J.; Schiemann, J.; Clarke, T.; Chamosa-Pino, V.; Claudi, F.; Harston, J. A.; Eleftheriou, C.; Pakan, J.; Huang, C.-C.; Hantman, A. W.; Rochefort, N. L.; Duguid, I.

10.1101/802124 — neuroscience — Posted on 2019-10-16

1992 Caffeine-induced Plasticity of Grey Matter Volume in Healthy Brains: A placebo-controlled multimodal within-subject study

Lin, Y.-S.; Weibel, J.; Landolt, H.-P.; Santini, F.; Mayer, M.; Borgwardt, S.; Cajochen, C.; Reichert, C.

10.1101/804047 — neuroscience — Posted on 2019-10-16

1993 Genomic analyses of population structure reveal metabolism as a primary driver of local adaptation in Daphnia pulex.

Maruki, T.; Ye, Z.; Lynch, M.

10.1101/807123 — evolutionary biology — Posted on 2019-10-16

1994 Integrating citizen science data with expert surveys improves the accuracy and range of inference of species distribution models

Robinson, O. J.; Ruiz-Gutierrez, V.; Reynolds, M. D.; Golet, G. H.; Strimas-Mackey, M.; Fink, D.

10.1101/806547 — ecology — Posted on 2019-10-16

1995 Unsupervised generative and graph representation learning for modelling cell differentiation

Bica, I.; Andres-Terre, H.; Cvejic, A.; Lio, P.

10.1101/801605 — bioinformatics — Posted on 2019-10-16

1996 Activin receptor ALK4 coordinates extracellular signals and intrinsic transcriptional programs to regulate development of cortical somatostatin interneurons

Gongrich, C.; Krapacher, F.; Munguba, H.; Fernandez-Suarez, D.; Andersson, A.; Hjerling-Leffler, J.; Ibanez, C. F.

10.1101/807271 — neuroscience — Posted on 2019-10-16

1997 Understanding and predicting ciprofloxacin minimum inhibitory concentration in Escherichia coli with machine learning

Pataki, B. A.; Matamoros, S.; van der Putten, B. C. L.; Remondini, D.; Giampieri, E.; Aytan-Aktug, D.; Hendriksen, R. S.; Lund, O.; Csabai, I.; Schultsz, C.; COMPARE ML-AMR group,

10.1101/806760 — microbiology — Posted on 2019-10-16

1998 Cell type specific genetic regulation of gene expression across human tissues

Kim-Hellmuth, S.; Aguet, F.; Oliva, M.; Munoz-Aguirre, M.; Wucher, V.; Kasela, S.; Castel, S. E.; Hamel, A.; Vinuela, A.; Roberts, A. L.; Mangul, S.; Wen, X.; Wang, G.; Barbeira, A.; Garrido-Martin, D.; Nadel, B.; Zou, Y.; Bonazzola, R.; Quan, J.; Brown, A.; Martinez-Perez, A.; Soria, J. M.; Getz, G.; Dermitzakis, E.; Small, K. S.; Stephens, M.; Xi, H. S.; Im, H. K.; Guigo, R.; Segre, A.; Stranger, B.; Ardlie, K.; Lappalainen, T.

10.1101/806117 — genomics — Posted on 2019-10-16

1999 Fluorescence photography of patterns and waves of bacterial adaptation at high antibiotic doses

Reding Roman, R. C.; Hewlett, M.; Bergmiller, T.; Gudelj, I.; Beardmore, R.

10.1101/806232 — evolutionary biology — Posted on 2019-10-16

2000 A Mean-Field Description of Bursting Dynamics in Spiking Neural Networks with Short-Term Adaptation

Gast, R.; Schmidt, H.; Knoesche, T. R.

10.1101/806273 — neuroscience — Posted on 2019-10-16

2001 Vector Trace cells in the Subiculum of the Hippocampal formation

Poulter, S.; Lee, S. A.; Dachtler, J.; Wills, T.; Lever, C.

10.1101/805242 — neuroscience — Posted on 2019-10-16

2002 Presynaptic inhibition of cutaneous afferents prevents chronic itch

Escalante, A.; Klein, R.

10.1101/806976 — neuroscience — Posted on 2019-10-16

2003 Ramping and State Uncertainty in the Dopamine Signal

Mikhael, J. G.; Kim, H. R.; Uchida, N.; Gershman, S. J.

10.1101/805366 — neuroscience — Posted on 2019-10-16

2004 Identification of scavenger receptor B1 as the airway microfold cell receptor for Mycobacterium tuberculosis

Khan, H. S.; Nair, V.; Ruhl, C. R.; Alvarez-Arguedas, S.; Galvan Rendiz, J. L.; Franco, L. H.; Huang, L.; Shaul, P.; Mitchell, R. B.; Shiloh, M. U.

10.1101/807222 — immunology — Posted on 2019-10-16

2005 High throughput CRISPR screening identifies genes involved in macrophage viability and inflammatory pathways

Covarrubias, S.; Vollmers, A.; Capili, A.; Boettcher, M.; Robinson, E. K.; O'Briain, L.; Vollmers, C.; Blau, J.; McManus, M.; Carpenter, S.

10.1101/807164 — immunology — Posted on 2019-10-16

2006 Environmental correlates of the European common toad hybrid zone

Arntzen, J.; Canestrelli, D.; Martinez-Solano, I.

10.1101/806067 — evolutionary biology — Posted on 2019-10-16

2007 Rare species perform worse than common species under changed climate

Vincent, H.; Bornand, C. N.; Kempel, A.; Fischer, M.

10.1101/805416 — ecology — Posted on 2019-10-16

2008 Mad dephosphorylation at the nuclear envelope is essential for asymmetric stem cell division

Sardi, J.; Bener, M. B.; Simao, T.; Descoteaux, A. E.; Slepchenko, B. M.; Inaba, M.

10.1101/798116 — developmental biology — Posted on 2019-10-16

2009 A Hypomorphic Cystathionine β-Synthase Gene Contributes to Cavefish Eye Loss by Disrupting Optic Vasculature

Ma, L.; Gore, A. V.; Castranova, D.; Shi, J.; Ng, M.; Tomins, K. A.; Weele, C. M. v. d.; Weinstein, B. M.; Jeffery, W. R.

10.1101/805804 — developmental biology — Posted on 2019-10-16

2010 StrainPro: a highly accurate Metagenomic strain-level profiling tool

Lin, H.-N.; Lin, Y.-L.; Hsu, W.-L.

10.1101/807149 — bioinformatics — Posted on 2019-10-16

2011 3D projection electrophoresis for single-cell immunoblotting

Grist, S. M.; Mourdoukoutas, A. P.; Herr, A. E.

10.1101/805770 — bioengineering — Posted on 2019-10-16

2012 An ancestral signalling pathway is conserved in plant lineages forming intracellular symbioses

Radhakrishnan, G. V.; Keller, J.; Rich, M. K.; Vernie, T.; Mbadinga Mbadinga, D. L.; Vigneron, N.; Cottret, L.; San Clemente, H.; Libourel, C.; Cheemah, J.; Linde, A.-M.; Eklund, D. M.; Cheng, S.; Wong, G. K.-S.; Lagercrantz, U.; Li, F.-W.; Oldroyd, G. E.; Delaux, P.-M.

10.1101/804591 — plant biology — Posted on 2019-10-16

2013 Inhibition of ATR Reverses a Mitochondrial Respiratory Insufficiency

Borror, M. B.; Girotti, M.; Kar, A.; Cain, M.; Gao, X.; MacKay, V.; Herron, B.; Bhaskaran, S.; Becerra, S.; Novy, N.; Ventura, N.; Johnson, T. E.; Kennedy, B. L.; Rea, S. L.

10.1101/805390 — pathology — Posted on 2019-10-16

2014 Invariant recognition of words and naturalistic sounds in non-human primates

Melchor, J.; Moran, I.; Figueroa, T.; Lemus, L.

10.1101/805218 — neuroscience — Posted on 2019-10-16

2015 Two simple criteria to estimate an objective’s performance when imaging in non design tissue clearing solutions

Asteriti, S.; Ricci, V.; Cangiano, L.

10.1101/799460 — neuroscience — Posted on 2019-10-16

2016 Evaluation of nutraceuticals including vitamin B12 and xenobiotic degradation capacity of Pleurotus species

Patel, Y.; Vishwakarma, S. K.; Sunita, K.

10.1101/805382 — microbiology — Posted on 2019-10-16

2017 Lymph node follicle formation and vaccination responses reconstituted in vitro in a human Organ Chip

Goyal, G.; Bausk, B.; Prabhala, P.; Xie, L.; Curran, D.; Long, J.; Cohen, L.; Levy, O.; Prantil-Baun, R.; Walt, D. R.; Ingber, D. E.

10.1101/806505 — immunology — Posted on 2019-10-16

2018 Demography and natural selection have shaped genome-wide variation in the widely distributed conifer Norway Spruce (Picea abies)

Wang, X.; Bernhardsson, C.; Ingvarsson, P. K.

10.1101/805903 — evolutionary biology — Posted on 2019-10-16

2019 CXCL4 links inflammation and fibrosis through transcriptional and epigenetic reprogramming of monocyte-derived cells

Silva-Cardoso, S. C.; Tao, W.; Angiolilli, C.; Lopes, A. P.; Bekker, C. P. J.; Devaprasad, A.; Giovannone, B.; van Laar, J.; Cossu, M.; Marut, W.; Hack, E.; de Boer, R. J.; Boes, M.; Radstake, T. R. D. J.; Pandit, A.

10.1101/807230 — bioinformatics — Posted on 2019-10-16

2020 Studying POU2F1 to Unveil the Structural Facet for Pan-Cancer Analysis Considering the Functional Annotations and Sequence-Structure Space Paradigm

Dey, A.; Sen, S.; Maulik, U.

10.1101/806489 — bioinformatics — Posted on 2019-10-16

2021 Distribution of members of the Anopheles gambiae complex in selected forested tourist areas of Cross River State, Nigeria

Oduwole, O. A.; Oduola, A. O.; Oringanje, C. M.; Nwanchuku, N. S.; Meremikwu, M. M.; Useh, M. F.; Alaribe, A. A.

10.1101/805085 — zoology — Posted on 2019-10-16

2022 OCSANA+: Optimal Control and Simulation of Signaling Networks from Network Analysis

Marazzi, L.; Gainer-Dewar, A.; Vera-Licona, P.

10.1101/806315 — systems biology — Posted on 2019-10-16

2023 Cardiomyocyte-Specific Deletion of GCN5L1 Limits Cardiac Contractile Decline in Obese Pre-Diabetic Mice

Thapa, D.; Manning, J. R.; Stoner, M. W.; Zhang, M.; Xie, B.; Sack, M. N.; Scott, I.

10.1101/805283 — physiology — Posted on 2019-10-16

2024 Pitch of Harmonic Complex Tones: Rate-Place Coding of Resolved Components in Harmonic and Inharmonic Complex Tones in Auditory Midbrain

Su, Y.; Delgutte, B.

10.1101/802827 — neuroscience — Posted on 2019-10-16

2025 The Effect of MR Image Quality on Structural and Functional Brain Connectivity: The Maastricht Study

de Jong, J. J. A.; Jansen, J. F. A.; Vergoossen, L. W. M.; Schram, M. T.; Stehouwer, C. D. A.; Wildberger, J. E.; Linden, D. E. J.; Backes, W. H.

10.1101/806075 — neuroscience — Posted on 2019-10-16

2026 A neurocomputational model of beat-based temporal processing

Cannon, J. J.; Patel, A.

10.1101/805838 — neuroscience — Posted on 2019-10-16

2027 A Computational Model of Thalamic Tonic-burst Motor Projection Neurons and Their Regulation by Pallidal GABAergic Neurons

Azam, M. A.; Kumbhare, D.; Hadimani, R.; Toms, J.; Baron, M.; Atulasimha, J.

10.1101/806653 — neuroscience — Posted on 2019-10-16

2028 Dopamine and risky decision-making in pathological and problem gamblers.

Peters, J.; Vega, T.; Weinstein, D.; Mitchell, J.; Kayser, A.

10.1101/805929 — neuroscience — Posted on 2019-10-16

2029 Comparing dopamine release, uptake, and D2 autoreceptor function across the ventromedial to dorsolateral striatum in adolescent and adult rats

Pitts, E. G.; Stowe, T. A.; Christensen, B.; Ferris, M. J.

10.1101/806638 — neuroscience — Posted on 2019-10-16

2030 Parallel Factor Analysis (PARAFAC) for multidimensional decomposition of fNIRS data - A validation study

Husser, A. M.; Caron-Desrochers, L.; Tremblay, J.; Vannasing, P.; Martinez-Montes, E.; Gallagher, A.

10.1101/806778 — neuroscience — Posted on 2019-10-16

2031 Biasing the perception of spoken words with tACS

Kosem, A.; Bosker, H. R.; Jensen, O.; Hagoort, P.; Riecke, L.

10.1101/806059 — neuroscience — Posted on 2019-10-16

2032 A Mechanism for Neurofilament Transport Acceleration through Nodes of Ranvier

Ciocanel, M.-V.; Jung, P.; Brown, A.

10.1101/806786 — neuroscience — Posted on 2019-10-16

2033 A survey of spiking activity reveals a functional hierarchy of mouse corticothalamic visual areas

Siegle, J. H.; Jia, X.; Durand, S.; Gale, S.; Bennett, C.; Graddis, N.; Heller, G.; Ramirez, T. K.; Choi, H.; Luviano, J. A.; Groblewski, P. A.; Arkhipov, A.; Bernard, A.; Billeh, Y. N.; Brown, D.; Buice, M. A.; Cain, N.; Caldejon, S.; Casal, L.; Cho, A.; Chvilicek, M.; Cox, T.; Dai, K.; Denman, D. J.; de Vries, S. E. J.; Esposito, L.; Farrell, C.; Feng, D.; Galbraith, J.; Garrett, M.; Gelfand, E. C.; Hancock, N.; Harris, J. A.; Howard, R.; Hu, B.; Hytnen, R.; Iyer, R.; Jessett, E.; Kato, I.; Kiggens, J.; Lecoq, J.; Ledochowitsch, P.; Lee, J. H.; Leon, A.; Li, Y.; Liang, E.; Long, F.; Mace, K.

10.1101/805010 — neuroscience — Posted on 2019-10-16

2034 Mindfulness meditators show enhanced working memory performance concurrent with different brain region engagement patterns during recall

Bailey, N.; Freedman, G.; Raj, K.; Spierings, K. N.; Piccoli, L.; Sullivan, C.; Chung, S. W.; Hill, A. T.; Rogasch, N.; Fitzgerald, P.

10.1101/801746 — neuroscience — Posted on 2019-10-16

2035 Identification of Fis1 interactors in Toxoplasma gondii reveals a novel protein required for peripheral distribution of the mitochondrion.

Arrizabalaga, G.; Jacobs, K.; Charvat, R.

10.1101/805911 — microbiology — Posted on 2019-10-16

2036 Detecting dipicolinic acid production and biosynthesis pathways in Bacilli and Clostridia

Gordon, B. R.; Duellman, P.; Salvucci, A.; De Lorme, M.

10.1101/803486 — microbiology — Posted on 2019-10-16

2037 Press disturbance unveils different community structure, function and assembly of bacterial taxa and functional genes in mesocosm-scale bioreactors

Santillan, E.; Constancias, F.; Wuertz, S.

10.1101/805788 — microbiology — Posted on 2019-10-16

2038 Encephalitic alphaviruses exploit caveolae-mediated transcytosis at the blood-brain barrier for CNS entry

Klein, R. S.; Salimi, H.; Cain, M. D.; Jiang, X.; Roth, R.; Beatty, W.; Sun, C.; Klimstra, W. B.; Hou, J. S.

10.1101/805945 — microbiology — Posted on 2019-10-16

2039 Ribosome dimerization prevents loss of essential ribosomal proteins during quiescence

Feaga, H.; Kopylov, M.; Kim, J. K.; Jovanovic, M.; Dworkin, J.

10.1101/806711 — microbiology — Posted on 2019-10-16

2040 New genome assemblies reveal patterns of domestication and adaptation across Brettanomyces (Dekkera) species

Roach, M. J.; Borneman, A. R.

10.1101/805721 — genomics — Posted on 2019-10-16

2041 A simple mass-action model predicts protein timecourses from mRNA trajectories during a dynamic response in two strains of S. cerevisiae

Kuo, S.; Egertson, J.; Merrihew, G.; MacCoss, M. J.; Pollard, D.; Rifkin, S. A.

10.1101/805846 — genomics — Posted on 2019-10-16

2042 Association between DNA methylation and ADHD symptoms from birth to school age: A prospective meta-analysis

Neumann, A.; Walton, E.; Alemany, S.; Cecil, C.; Gonzalez, J. R.; Jima, D. D.; Lahti, J.; Tuominen, S. T.; Barker, E. D.; Binder, E.; Caramaschi, D.; Carracedo, A.; Czamara, D.; Evandt, J.; Felix, J. F.; Fuemmeler, B. F.; Gutzkow, K. B.; Hoyo, C.; Julvez, J.; Kajantie, E.; Laivuori, H.; Maguire, R.; Maitre, L.; Murphy, S. K.; Murcia, M.; Villa, P. M.; Sharp, G.; Sunyer, J.; Raikkonen, K.; Bakermans-Kranenburg, M.; van IJzendoorn, M.; Guxens, M.; Relton, C. L.; Tiemeier, H.

10.1101/806844 — genetics — Posted on 2019-10-16

2043 Physical activity and risk of lung cancer: a two-sample Mendelian randomiza-tion study

Baumeister, S.-E.; Leitzmann, M.; Amos, C.; Hung, R.; Teumer, A.; Baurecht, H.

10.1101/806083 — genetics — Posted on 2019-10-16

2044 Tunings for leapfrog integration of Hamiltonian Monte Carlo for estimating genetic parameters

Arakawa, A.; Hayashi, T.; Taniguchi, M.; Mikawa, S.; Nishio, M.

10.1101/805499 — genetics — Posted on 2019-10-16

2045 Automating the analysis of fish abundance using object detection: optimising animal ecology with deep learning

Ditria, E.; Lopez-Marcano, S.; Jinks, E.; Sievers, M.; Brown, C. J.; Connolly, R.

10.1101/805796 — ecology — Posted on 2019-10-16

2046 Sick plants in grassland communities: a growth-defense trade-off is the main driver of fungal pathogen abundance and impact

Cappelli, S. L.; Pichon, N. A.; Kempel, A.; Allan, E.

10.1101/806299 — ecology — Posted on 2019-10-16

2047 Traditional functional groups capture limited variation in the trait space of macroalgae

Mauffrey, A. R. L.; Cappelatti, L.; Griffin, J. N.

10.1101/803965 — ecology — Posted on 2019-10-16

2048 SMART: Statistical Mitogenome Assembly with Repeats

Alqahtani, F.; Mandoiu, I. I.

10.1101/795633 — bioinformatics — Posted on 2019-10-16

2049 Application of post-selection inference to multi-omics data yields insights into the etiologies of human diseases

Yurko, R. J.; G'Sell, M.; Roeder, K.; Devlin, B.

10.1101/806471 — genetics — Posted on 2019-10-16

2050 Less is more! Rapid increase in plant species richness after reduced mowing of urban grasslands

Sehrt, M.; Freitag, M.; Bossdorf, O.; Bucharova, A.

10.1101/805325 — ecology — Posted on 2019-10-16

2051 Stimulus-specific neural encoding of a persistent, internal defensive state in the hypothalamus

Kennedy, A.; Kunwar, P. S.; Li, L.; Wagenaar, D. A.; Anderson, D. J.

10.1101/805317 — neuroscience — Posted on 2019-10-16

2052 Deletion of M-opsin prevents \"M cone\" degeneration in a mouse model of Leber congenital amaurosis

Xu, H.; Enemchukwu, N.; Zhong, X.; Zhang, O.; Fu, Y.

10.1101/803510 — neuroscience — Posted on 2019-10-16

2053 Step selection functions on energy landscapes reveal how linear features alter migration movement in a large soaring bird

Eisaguirre, J. M.; Booms, T. L.; Barger, C. P.; Lewis, S. B.; Breed, G. A.

10.1101/805374 — ecology — Posted on 2019-10-16

2054 Minimal lactazole scaffold for in vitro production of pseudo-natural thiopeptides

Vinogradov, A. A.; Shimomura, M.; Goto, Y.; Ozaki, T.; Asamizu, S.; Sugai, Y.; Suga, H.; Onaka, H.

10.1101/807206 — biochemistry — Posted on 2019-10-16

2055 An optimized workflow for single-cell transcriptomics and repertoire profiling of purified lymphocytes from clinical samples.

Hanamsagar, R.; Reizis, T.; Chamberlain, M.; Marcus, R.; Nestle, F.; de Rinaldis, E.; Savova, V.

10.1101/803031 — immunology — Posted on 2019-10-16

2056 Channelrhodopsin C1C2: Photocycle kinetics and interactions near the central gate

VanGordon, M. R.; Prignano, L.; Dempski, R. E.; Rick, S.; Rempe, S. B.

10.1101/807909 — biophysics — Posted on 2019-10-16

2057 Chemoinformatic-guided engineering of polyketide synthases

Zargar, A.; Lal, R.; Valencia, L.; Wang, J.; Backman, T.; Cruz-Morales, P.; Kothari, A.; Werts, M.; Wong, A.; Bailey, C. B.; Loubat, A.; Liu, Y.; Benites, V.; Chang, S.; Hernandez, A. C.; Barajas, J. F.; Thompson, M.; Barcelos, C.; Anayah, R.; Garcia-Martin, H.; Mukhopadhyay, A.; Baidoo, E. E.; Katz, L.; Keasling, J. D.

10.1101/805671 — biochemistry — Posted on 2019-10-16

2058 The receptor PTPRU is a redox sensitive pseudophosphatase

Hay, I. M.; Fearnley, G. W.; Rios, P.; Koehn, M.; Sharpe, H. J.; Deane, J. E.

10.1101/805119 — biochemistry — Posted on 2019-10-16

2059 Natural selection drives population divergence for local adaptation in a wheat pathogen

Pereira, D.; Brunner, P.; McDonald, B.

10.1101/805127 — evolutionary biology — Posted on 2019-10-16

2060 The evolution of competitive ability for essential resources

Bernhardt, J. R.; Kratina, P.; Pereira, A.; Tamminen, M.; Thomas, M. K.; Narwani, A.

10.1101/804542 — evolutionary biology — Posted on 2019-10-16

2061 Differences in signalling, trafficking and glucoregulatory properties of glucagon-like peptide-1 receptor agonists exendin-4 and lixisenatide

Pickford, P.; Lucey, M.; Fang, Z.; Bitsi, S.; Broichhagen, J.; Hodson, D.; Minnion, J.; Rutter, G. A.; Bloom, S. R.; Tomas, A.; Jones, B.

10.1101/803833 — pharmacology and toxicology — Posted on 2019-10-16

2062 A model to study NMDA receptors in early nervous system development

Zoodsma, J.; Chan, K.; Golann, D.; Bhandiwad, A.; Napoli, A.; Liu, G.; Syed, S.; Burgess, H.; Sirotkin, H.; Wollmuth, L.

10.1101/807115 — neuroscience — Posted on 2019-10-16

2063 Biased M1 positive allosteric modulators reveal novel role of phospholipase D in M1-dependent rodent cortical plasticity

Moran, S. P.; Xiang, Z.; Doyle, C. A.; Maksymetz, J.; Lv, X.; Faltin, S.; Niswender, C. M.; Rook, J. M.; Lindsley, C. W.; Conn, P. J.

10.1101/806943 — neuroscience — Posted on 2019-10-16

2064 Integrating healthcare and research genetic data empowers the discovery of 49 novel developmental disorders

Kaplanis, J.; Samocha, K. E.; Wiel, L.; Zhang, Z.; Arvai, K.; Eberhardt, R.; Gallone, G.; Lelieveld, S. H.; Martin, H.; McRae, J.; Short, P.; Torene, R.; de Boer, E.; Danecek, P.; Gardner, E. J.; Huang, N.; Lord, J.; Martincorena, I.; Pfundt, R.; Reijnders, M.; Yeung, A.; Yntema, H.; DDD study, ; Vissers, L.; Juusola, J.; Wright, C.; Brunner, H.; Firth, H. V.; Fitzpatrick, D. R.; Barrett, J. C.; Hurles, M. E.; Gilissen, C.; Retterer, K.

10.1101/797787 — genomics — Posted on 2019-10-16

2065 Parasite dispersal influences introgression rate

Dona, J.; Sweet, A.; Johnson, K.

10.1101/527226 — evolutionary biology — Posted on 2019-10-16

2066 Selective Translation Complex Profiling Reveals Staged Initiation and Co-translational Assembly of Initiation Factor Complexes

Wagner, S.; Herrmannova, A.; Hronova, V.; Sen, N.; Hannan, R.; Hinnebusch, A. G.; Shirokikh, N.; Preiss, T.; Valasek, L. S.

10.1101/806125 — molecular biology — Posted on 2019-10-16

2067 Selective 40S footprinting reveals that scanning ribosomes remain cap-tethered in human cells

Bohlen, J.; Fenzl, K.; Kramer, G.; Bukau, B.; Teleman, A. A.

10.1101/806364 — molecular biology — Posted on 2019-10-16

2068 Identification Of Peptides Interfering The LRRK2/PP1 Interaction

Dong, C.-Z.; Bruzzoni-Giovanelli, H.; Yu, Y.; Dorgham, K.; Parizot, C.; Zini, J. M.; Tuffery, P.; Rebollo, A.

10.1101/807487 — molecular biology — Posted on 2019-10-16

2069 A memory of RPS25 loss drives resistance phenotypes

Johnson, A. G.; Flynn, R. A.; Lapointe, C. P.; Ooi, Y. S.; Zhao, M. L.; Yamada, S. B.; Couthouis, J.; Gitler, A. D.; Carette, J. E.; Puglisi, J. D.

10.1101/805663 — molecular biology — Posted on 2019-10-16

2070 Dis3L2 regulates cellular proliferation through a PI3-Kinase dependent signalling pathway

Towler, B. P.; Pashler, A. L.; Haime, H. J.; Przybyl, K. M.; Viegas, S. C.; Matos, R. G.; Morley, S. J.; Arraiano, C. M.; Newbury, S. F.

10.1101/806109 — molecular biology — Posted on 2019-10-16

2071 Extracellular ATP and CD39 activate cAMP-mediated mitochondrial stress response to promote cytarabine resistance in acute myeloid leukemia

Aroua, N.; Sarry, J.-E.

10.1101/806992 — cancer biology — Posted on 2019-10-16

2072 Volumetric fluorescence imaging in a human eye model by oblique scanning laser ophthalmoscope (oSLO): a feasibility study

Shao, W.; Song, W.; Yi, J.

10.1101/804237 — bioengineering — Posted on 2019-10-16

2073 AKT2 deficiency causes sarcopenia and metabolic disorder of skeletal muscle

Chen, M.; Ji, C.; Xiao, F.; Chen, D.; Gao, S.; Yang, Q.; Peng, Y.; Sanchis, D.; Yan, F.; Ye, J.

10.1101/805812 — molecular biology — Posted on 2019-10-16

2074 Gene Content Evolution in the Arthropods

Thomas, G. W. C.; Dohmen, E.; Hughes, D. S. T.; Murali, S. C.; Poelchau, M.; Glastad, K.; Anstead, C. A.; Ayoub, N. A.; Batterham, P.; Bellair, M.; Binford, G. J.; Chao, H.; Chen, Y. H.; Childers, C.; Dinh, H.; Doddapaneni, H.; Duan, J. J.; Dugan, S.; Esposito, L. A.; Friedrich, M.; Garb, J.; Gasser, R. B. B.; Goodisman, M. A. D.; Gundersen-Rindal, D. E.; Han, Y.; Handler, A. M.; Hatakeyama, M.; Hering, L.; Hunter, W. B.; Ioannidis, P.; Jayaseelan, J. C.; Kalra, D.; Khila, A.; Korhonen, P. K.; Lee, C. E.; Lee, S. L.; Li, Y.; Lindsey, A. R. I.; Mayer, G.; McGregor, A. P.; McKenna, D. D.; Misof,

10.1101/382945 — genomics — Posted on 2019-10-16

2075 Polyadenylation of Histone H3.1 mRNA Promotes Cell Transformation by Displacing H3.3 from Gene Regulatory Elements

Chen, D.; Chen, Q. Y.; Wang, Z.; Zhu, Y.; Kluz, T.; Tan, W.; Li, J.; Wu, F.; Fang, L.; Zhang, X.; He, R.; Shen, S.; Sun, H.; Zang, C.; Jin, C.; Costa, M.

10.1101/806828 — molecular biology — Posted on 2019-10-16

2076 The Rho/Rac guanine nucleotide exchange factor Vav1 regulates HIF-1α; and GLUT-1 expression and glucose uptake in the brain

Hong, J.; Kim, Y.; Yanpallewar, S.; Lin, P. C.

10.1101/806307 — cell biology — Posted on 2019-10-16

2077 DNA hydroxymethylation reveals transcription regulation networks and prognostic signatures in multiple myeloma

Alberge, J.-B.; Magrangeas, F.; Wagner, M.; Denie, S.; Guerin-Charbonnel, C.; Campion, L.; Attal, M.; Avet-Loiseau, H.; Carell, T.; Moreau, P.; Minvielle, S.; Serandour, A. A.

10.1101/806133 — cancer biology — Posted on 2019-10-16

2078 Exosomes transmit retroelement RNAs to drive inflammation and immunosuppression in Ewing Sarcoma

Evdokimova, V.; Ruzanov, P.; Gassmann, H.; Zaidi, H. H.; Peltekova, V.; Heisler, L. E.; McPherson, J. D.; Orlic-Milacic, M.; Specht, K.; Steiger, K.; Schober, S. J.; Thiel, U.; McKee, T. D.; Zaidi, M.; Spring, C. M.; Lapouble, E.; Delattre, O.; Burdach, S.; Stein, L. D.; Sorensen, P. H.

10.1101/806851 — cancer biology — Posted on 2019-10-16

2079 In vivo imaging defines vascular interplay in the development of lymphocytic leukemia in zebrafish models

Revskoy, S.; Blair, M. E.; Powell, S. M.; Hausman, E. S.; Blackburn, J. S.

10.1101/806562 — cancer biology — Posted on 2019-10-16

2080 Developmental regulation of Canonical and small ORF translation from mRNA

Patraquim, P.; Mumtaz, M. A.; Pueyo, J.; Aspden, J.; Couso, J. P.

10.1101/727339 — genomics — Posted on 2019-10-16

2081 Coding and noncoding somatic mutations in basal cell carcinoma

Maturo, M. G.; Rachakonda, P. S.; Heidenreich, B.; Pellegrini, C. P.; Srinivas, N.; Requena, C.; Serra-Guillen, C.; Llombart, B.; Sanmartin, O.; Guillen, C.; Di Nardo, L.; Peris, K.; Fargnoli, M. C.; Nagore, E.; Kumar, R.

10.1101/807313 — cancer biology — Posted on 2019-10-16

2082 Modulating Sphingosine-1-Phosphate receptors to improve chemotherapy delivery to Ewing sarcoma

MARMONTI, E. F.; SAVAGE, H.; ZHANG, A.; ALVAREZ, C.; MORRELL, M.; SCHADLER, K.

10.1101/805655 — cancer biology — Posted on 2019-10-16

2083 Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation

Bawn, M.; Thilliez, G.; Wheeler, N.; Kirkwood, M.; Petrovska, L.; Dallman, T. J.; Hall, N.; Kingsley, R. A.

10.1101/804674 — genomics — Posted on 2019-10-16

2084 Low dose Cold Atmospheric Plasma induces membrane oxidation, stimulates endocytosis and enhances uptake of nanomaterials in Glioblastoma multiforme cells

He, Z.; Liu, K.; Scally, L.; Manaloto, E.; Gunes, S.; Ng, S. W.; Maher, M.; Tiwari, B.; Byrne, H. J.; Bourke, P.; Tian, F.; Cullen, P. J.; Curtin, J. F.

10.1101/805192 — cancer biology — Posted on 2019-10-16

2085 Endothelial Protein C Receptor Could Contribute to Experimental Malaria-Associated Acute Respiratory Distress Syndrome

Ortolan, L. S.; Sercundes, M. K.; Moura, G. C.; Quirino, T. C.; Debone, D.; Costa, D. S.; Murillo, O.; Marinho, C. R. F.; Epiphanio, S.

10.1101/348318 — pathology — Posted on 2019-10-16

2086 Natural image reconstruction from brain waves: a novel visual BCI system with native feedback

Rashkov, G. V.; Bobe, A. S.; Fastovets, D. V.; Komarova, M. V.

10.1101/787101 — neuroscience — Posted on 2019-10-16

2087 A cross-scale assessment of productivity-diversity relationships

Craven, D.; van der Sande, M.; Meyer, C.; Gerstner, K.; Bennett, J. M.; Giling, D. P.; Hines, J.; Phillips, H. R. P.; May, F.; Bannar-Martin, K.; Chase, J.; Keil, P.

10.1101/769232 — ecology — Posted on 2019-10-16

2088 Prenatal alcohol exposure disrupts Shh pathway and primary cilia genes in the mouse neural tube

Boschen, K. E.; Fish, E. W.; Parnell, S. E.

10.1101/649673 — developmental biology — Posted on 2019-10-16

2089 Cortical sensitivity to natural scene structure

Kaiser, D.; Haeberle, G.; Cichy, R. M.

10.1101/613885 — neuroscience — Posted on 2019-10-16

2090 Analysis of the FBXO7 promoter reveals overlapping Pax5 and c-Myb binding sites functioning in B cells

Randle, S. J.; Laman, H.

10.1101/792895 — molecular biology — Posted on 2019-10-16

2091 Drug Combination Antagonism and Single Agent Dominance Result from Differences in Death Activation Kinetics

Richards, R.; Schwartz, H. R.; Stewart, M. S.; Cruz-Gordillo, P.; Honeywell, M. E.; Joyce, A. J.; Landry, B. D.; Lee, M. J.

10.1101/805093 — systems biology — Posted on 2019-10-16

2092 Enzyme Catalytic Activity Emulated Within DNA-based Nanodevice

Kekic, T.; Ahmadi, Y.; Barisic, I.

10.1101/804518 — synthetic biology — Posted on 2019-10-16

2093 A novel major output target for pheromone-sensitive projection neurons in male moths

Chu, X.; Heinze, S.; Ian, E.; Berg, B. G.

10.1101/804922 — neuroscience — Posted on 2019-10-16

2094 Prophage induction mediated by quorum sensing signals alters soil bacterial community structure

Liang, X.; Wagner, R. E.; Li, B.; Zhang, N.; Radosevich, M.

10.1101/805069 — microbiology — Posted on 2019-10-16

2095 Energy-based and energy-free food-consumption are correlated in captive non-human-primates: A novel dispenser for feeding and behavioral enrichment

Shohat, Y.; Paz, R.; Pryluk, R.; Taub, A. H.

10.1101/803528 — animal behavior and cognition — Posted on 2019-10-16

2096 Specific decreasing of Na+ channel expression on the lateral membrane of cardiomyocytes causes fatal arrhythmias in Brugada syndrome

Tsumoto, K.; Ashihara, T.; Naito, N.; Shimamoto, T.; Amano, A.; Kurata, Y.; Kurachi, Y.

10.1101/805986 — biophysics — Posted on 2019-10-16

2097 GraphClust2: annotation and discovery of structured RNAs with scalable and accessible integrative clustering

Miladi, M.; Sokhoyan, E.; Houwaart, T.; Heyne, S.; Costa, F.; Gruening, B.; Backofen, R.

10.1101/550335 — bioinformatics — Posted on 2019-10-16

2098 Universal assay for measuring vertebrate telomeres by real-time quantitative PCR

Hudon, S. F.; Palencia Hurtado, E.; Beck, J. D.; Burden, S. J.; Bendixsen, D. P.; Callery, K. R.; Forbey, J. S.; Waits, L. P.; Miller, R. A.; Nielsen, O. K.; Heath, J. A.; Hayden, E. J.

10.1101/797068 — molecular biology — Posted on 2019-10-16

2099 Persistent DNA Hyper-methylation Dampens Host Anti-Mycobacterial Immunity

DiNardo, A. R.; Rajapakshe, K.; Nishiguchi, T.; Mtetwa, G.; Dlamini, Q.; Kahari, J.; Mahapatra, S.; Kay, A.; Maphalala, G.; Mace, E.; Grimm, S. L.; Makedonas, G.; Cirillo, J. D.; Netea, M. G.; van Crevel, R.; Coarfa, C.; Mandalakas, A. M.

10.1101/805457 — immunology — Posted on 2019-10-16

2100 Cryo-electron microscopy structure of a nucleosome-bound SWI/SNF chromatin remodeling complex

Han, Y.; Reyes, A. A.; Malik, S.; He, Y.

10.1101/805184 — molecular biology — Posted on 2019-10-16

2101 Architecture of the chromatin remodeler RSC and insights into its nucleosome engagement

Patel, A. B.; Moore, C. M.; Greber, B. J.; Luo, J.; Ranish, J.; Nogales, E.

10.1101/804534 — molecular biology — Posted on 2019-10-16

2102 NCBP2 modulates neurodevelopmental defects of the 3q29 deletion in Drosophila and X. laevis models

Singh, M. D.; Jensen, M.; Lasser, M.; Huber, E.; Yusuff, T.; Pizzo, L.; Lifschutz, B.; Desai, I.; Kubina, A.; Yennawar, S.; Kim, S.; Iyer, J.; Rincon-Limas, D. E.; Lowery, L. A.; Girirajan, S.

10.1101/614750 — genomics — Posted on 2019-10-16

2103 Phytotransferrin endocytosis mediates a direct cell surface-to-chloroplast iron trafficking axis in marine diatoms

Turnsek, J.; Brunson, J. K.; Deerinck, T. J.; Obornik, M.; Horak, A.; Bielinski, V. A.; Allen, A. E.

10.1101/806539 — cell biology — Posted on 2019-10-16

2104 Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules

Baker, J. L.; Morton, J. T.; Dinis, M.; Alvarez, R.; Tran, N. C.; Knight, R.; Edlund, A.

10.1101/804443 — microbiology — Posted on 2019-10-16

2105 Coupling Day Length Data and Genomic Prediction tools for Predicting Time-Related Traits under Complex Scenarios

Jarquin, D.; Kajiya-Kanegae, H.; Taishen, C.; Yabe, S.; Persa, R.; Yu, J.; Nakagawa, H.; Yamasaki, M.; Iwata, H.

10.1101/703488 — genomics — Posted on 2019-10-16

2106 Unconventional kinetochore kinases KKT10/19 promote the metaphase to anaphase transition in Trypanosoma brucei

Ishii, M.; Akiyoshi, B.

10.1101/806224 — cell biology — Posted on 2019-10-16

2107 Qualitative and quantitative architectural analyses of tree forking habit with single-image photogrammetry: a case study of post-mature temperate oaks

Kedra, K. W.

10.1101/795286 — plant biology — Posted on 2019-10-16

2108 Multiscale dynamics and information flow in a data-driven model of the primary motor cortex microcircuit

Dura-Bernal, S.; Neymotin, S. A.; Suter, B. A.; Shepherd, G. M.; Lytton, W. W.

10.1101/201707 — neuroscience — Posted on 2019-10-16

2109 Genome sequencing of Musa acuminata Dwarf Cavendish reveals a duplication of a large segment of chromosome 2

Busche, M.; Pucker, B.; Viehoever, P.; Weisshaar, B.; Stracke, R.

10.1101/691923 — genomics — Posted on 2019-10-16

2110 Experimental evolution of independent genetic pathways for resistance to Pseudomonas aeruginosa pathogenicity within the nematode Caenorhabditis remanei

Archer, H.; Phillips, P. C.

10.1101/484998 — evolutionary biology — Posted on 2019-10-16

2111 Competition and diversity determine vaccine impact on antibiotic resistance evolution

Davies, N. G.; Flasche, S.; Jit, M.; Atkins, K. E.

10.1101/610188 — evolutionary biology — Posted on 2019-10-16

2112 GranatumX: A community engaging and flexible software environment for single-cell analysis

Zhu, X.; Yunits, B.; Wolfgruber, T.; Liu, Y.; Huang, Q.; Poirion, O.; Arisdakessian, C.; Zhao, T.; Garmire, D.; Garmire, L.

10.1101/385591 — bioinformatics — Posted on 2019-10-16

2113 SKIPHOS: non-kinase specific phosphorylation site prediction with random forests and amino acid skip-gram embeddings

Dang, H. T.; Trac, T. Q.; Phan, K. H.; Nguyen, C. M.; Pham, T. T. Q.

10.1101/793794 — bioinformatics — Posted on 2019-10-16

2114 Niche-inspired synthetic matrices for epithelial organoid culture

Hernandez-Gordillo, V.; Kassis, T.; Lampejo, A.; Choi, G.; Gamboa, M. E.; Gnecco, J. S.; Breault, D.; Carrier, R.; Griffith, L. G.

10.1101/806919 — bioengineering — Posted on 2019-10-16

2115 Muscles Recruited During an Isometric Knee Extension Task is Defined by Proprioceptive Feedback

York, G.; Osborne, H.; Sriya, P.; Astill, S.; de Kamps, M.; Chakrabarty, S.

10.1101/802736 — neuroscience — Posted on 2019-10-16

2116 Assessing exposure effects on gene expression

Reifeis, S. A.; Hudgens, M. G.; Civelek, M.; Mohlke, K. L.; Love, M. I.

10.1101/806554 — genomics — Posted on 2019-10-16

2117 Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals

Vaga, S.; Lee, S.; Ji, B.; Andreasson, A.; Talley, N. J.; Agreus, L.; Bidkhori, G.; Kovatcheva-Datchary, P.; Park, J.; Lee, D.; Proctor, G.; Ehrlich, D.; Nielsen, J.; Engstrand, L.; Shoaie, S.

10.1101/806166 — systems biology — Posted on 2019-10-16

2118 Efficient and robust coding in heterogeneous recurrent networks

Zeldenrust, F.; Gutkin, B.; Deneve, S.

10.1101/804864 — neuroscience — Posted on 2019-10-16

2119 Measuring chromosome conformation by fluorescence microscopy

Ross, B. C.; Anaclerio, F.; Lorusso, N.; Ventura, M.; Costello, J.

10.1101/798512 — genomics — Posted on 2019-10-16

2120 Curling of epithelial monolayers reveals coupling between active bending and tissue tension

Fouchard, J.; Wyatt, T. P. J.; Proag, A.; Lisica, A.; Khalilgharibi, N.; Recho, P.; Suzanne, M.; Kabla, A.; Charras, G.

10.1101/806455 — biophysics — Posted on 2019-10-16

2121 Targeting endogenous K-RAS for degradation through the affinity-directed protein missile system

Roth, S.; Macartney, T. J.; Konopacka, A.; Queisser, M. A.; Sapkota, G. P.

10.1101/805150 — molecular biology — Posted on 2019-10-16

2122 Integrative genomic, transcriptomic, and epigenomic analyses of benign prostatic hyperplasia reveal new options for therapy

Liu, D.; Shoag, J. E.; Poliak, D.; Goueli, R. S.; Ravikumar, V.; Redmond, D.; Vosoughi, A.; Fontugne, J.; Pan, H.; Lee, D.; Thomas, D. D. M.; Salari, K.; Wang, Z.; Romanel, A.; Te, A.; Lee, R.; Chughtai, B.; Olumi, A. F.; Mosquera, J. M.; Demichelis, F.; Elemento, O.; Rubin, M.; Sboner, A.; Barbieri, C. E.

10.1101/805168 — genomics — Posted on 2019-10-16

2123 Microtubule polymerization state and clathrin-dependent internalization regulate dynamics of cardiac potassium channel

Melgari, D.; Barbier, C.; Dilanian, G.; Rucker-Martin, C.; Doisne, N.; Coulombe, A.; hatem, s.; Balse, E.

10.1101/805234 — cell biology — Posted on 2019-10-16

2124 Classification of platelet aggregates by agonist type

Zhou, Y.; Yasumoto, A.; Lei, C.; Huang, C.-J.; Kobayashi, H.; Wu, Y.; Yan, S.; Sun, C.-W.; Yatomi, Y.; Goda, K.

10.1101/805408 — cell biology — Posted on 2019-10-16

2125 Specific decreasing of Na+ channel expression on the lateral membrane of cardiomyocytes causes fatal arrhythmias in Brugada syndrome

Tsumoto, K.; Ashihara, T.; Naito, N.; Shimamoto, T.; Amano, A.; Kurata, Y.; Kurachi, Y.

10.1101/805986 — biophysics — Posted on 2019-10-16

2126 Widespread inhibitory responses in the mouse olfactory sensory neurons in vivo

Inagaki, S.; Iwata, R.; Imai, T.

10.1101/803908 — neuroscience — Posted on 2019-10-16

2127 Hippocampal spike-time correlations and place-field overlaps during open field foraging

Monsalve-Mercado, M. M.; Roudi, Y.

10.1101/801209 — neuroscience — Posted on 2019-10-16

2128 Junction-skipping regulation in complex disease

Liu, R.; Karjalainen, J.; Byrnes, A.; Cummings, B. B.; Gormley, P.; Ruan, Y.; Park, Y.; Hou, L.; Nguyen, K. T.; Xavier, R.; Daly, M. J.; Huang, H.

10.1101/804039 — genetics — Posted on 2019-10-16

2129 Champagne: Whole-genome phylogenomic character matrix method places Myomorpha basal in Rodentia

Schull, J. K.; Turakhia, Y.; Dally, W. J.; Bejerano, G.

10.1101/803957 — evolutionary biology — Posted on 2019-10-16

2130 Idea Paper: Predicting culturability of microbes from population dynamics under field conditions

Ushio, M.

10.1101/795401 — ecology — Posted on 2019-10-16

2131 Geographical distribution of Anopheles stephensi in eastern Ethiopia

Balkew, M.; Mumba, P.; Dengela, D.; Yohannes, G.; Getachew, D.; Yared, S.; Chibsa, S.; Murphy, M.; George, K.; Lopez, K.; Janies, D.; Choi, S. H.; Spear, J.; Irish, S. R.; Carter, T. E.

10.1101/802587 — ecology — Posted on 2019-10-16

2132 Spatiotemporal control of gene expression boundaries using a feedforward loop

Bandodkar, P.; Al Asafen, H.; Reeves, G. T.

10.1101/806620 — developmental biology — Posted on 2019-10-16

2133 A weak link with actin organizes tight junctions to control epithelial permeability

Belardi, B.; Hamkins-Indik, T.; Harris, A. R.; Fletcher, D. A.

10.1101/805689 — cell biology — Posted on 2019-10-16

2134 Expression and purification of Protease Activated Receptor 4 (PAR4) and analysis with histidine hydrogen deuterium exchange.

de le Fuente, M.; Han, X.; Miyagi, M.; Nieman, M. T.

10.1101/804427 — biochemistry — Posted on 2019-10-16

2135 Unique features of mRNA translation initiation in trypanosomatids

Bochler, A.; Brito Querido, J.; Prilepskaja, T.; Soufari, H.; Lucia Del Cistia, M.; Kuhn, L.; Rimoldi Ribeiro, A.; Valasek, L. S.; Hashem, Y.

10.1101/806141 — molecular biology — Posted on 2019-10-16

2136 Investigating within-host diversity of Mycobacterium tuberculosis reveals novel super-spreaders in the Canadian North

Lee, R. S.; Proulx, J.-F.; McIntosh, F.; Behr, M. A.; Hanage, B.

10.1101/801308 — genomics — Posted on 2019-10-16

2137 A single-cell transcriptome atlas of the adult muscle precursors uncovers early events in fiber-type divergence in Drosophila

Zappia, M. P.; de Castro, L.; Ariss, M.; Islam, A. B. M. M. K.; Frolov, M.

10.1101/806281 — genetics — Posted on 2019-10-16

2138 Switchgrass Rhizosphere Metabolite Chemistry Driven by Nitrogen Availability

Smercina, D.; Bowsher, A. W.; Evans, S. E.; Friesen, M. L.; Eder, E. K.; Hoyt, D. W.; Tiemann, L. K.

10.1101/802926 — ecology — Posted on 2019-10-16

2139 Dynamic interactions and intracellular fate of label-free GO within mammalian cells: role of lateral sheet size

Chen, Y.; Crica, L. E.; Rosano, V.; Arranz, A. E.; Spiller, D.; Kostarelos, K.; Vranic, S.

10.1101/805200 — cell biology — Posted on 2019-10-16

2140 Impaired renal gluconeogenesis is a major determinant of acute kidney injury associated mortality

Legouis, D.; Ricksten, S.-E.; Faivre, A.; Gariani, K.; Galichon, P.; Berchtold, L.; Feraille, E.; Koppitch, K.; Hertig, A.; Martin, P.-Y.; Naesens, M.; Pugin, J.; McMahon, A. P.; Cippà, P. E.; de Seigneux, S.

10.1101/804997 — cell biology — Posted on 2019-10-16

2141 Defect patterns on the curved surface of fish retinae suggest mechanism of cone mosaic formation

Nunley, H.; Nagashima, M.; Martin, K.; Lorenzo Gonzalez, A.; Suzuki, S. C.; Norton, D.; Wong, R. O. L.; Raymond, P. A.; Lubensky, D. K.

10.1101/806679 — biophysics — Posted on 2019-10-16

2142 CLICK-enabled analogues reveal pregnenolone interactomes in cancer and immune cells

Roy, S.; Sipthorp, J.; Mahata, B.; Pramanik, J.; Hennrich, M. L.; Gavin, A.-C.; Ley, S. V.; Teichmann, S.

10.1101/800649 — biochemistry — Posted on 2019-10-16

2143 Neev, a novel long non-coding RNA, is expressed in chaetoblasts during regeneration of Eisenia fetida

Patel, S. S.; Zunjarrao, S.; Pillai, B.

10.1101/806661 — zoology — Posted on 2019-10-16

2144 Improved phenotypic predictions of metabolic models by integrating regulatory constraints

Li, G.; Zuo, C.; Liu, Q.; Wang, P.; Du, W.; Cao, H.

10.1101/806703 — systems biology — Posted on 2019-10-16

2145 Parallel evolution of multiple mechanisms for demethylase inhibitor fungicide resistance in the barley pathogen Pyrenophora teres f. sp. maculata

Mair, W. J.; Thomas, G. J.; Dodhia, K.; Hills, A. L.; Jayasena, K. W.; Ellwood, S. R.; Oliver, R. P.; Lopez-Ruiz, F. J.

10.1101/798991 — plant biology — Posted on 2019-10-16

2146 Differential contribution of p300 and CBP to regulatory elements in mESCs

Martire, S.; Sundaresan, A.; Banaszynski, L.

10.1101/806869 — genomics — Posted on 2019-10-16

2147 The two extinctions of the Carolina parakeet

Burgio, K. R.; Carlson, C. J.; Bond, A. L.; Rubega, M. A.; Tingley, M. W.

10.1101/801142 — ecology — Posted on 2019-10-16

2148 The LTB4-BLT1 signaling axis coordinates actomyosin dynamics and β-2 Integrin trafficking to drive intravascular neutrophil response to infection

Subramanian, B. C.; Melis, N.; Chen, D.; Wang, W.; Gallardo, D.; Weigert, R.; Parent, C.

10.1101/804914 — cell biology — Posted on 2019-10-16

2149 The SMYD3 methyltransferase promotes myogenesis by activating the myogenin regulatory network

Codato, R.; Perichon, M.; Divol, A.; Fung, E.; Sotiropoulos, A.; Bigot, A.; Weitzman, J. B.; Medjkane, S.

10.1101/804633 — cell biology — Posted on 2019-10-16

2150 Energy-based and energy-free food-consumption are correlated in captive non-human-primates: A novel dispenser for feeding and behavioral enrichment

Shohat, Y.; Paz, R.; Pryluk, R.; Taub, A. H.

10.1101/803528 — animal behavior and cognition — Posted on 2019-10-16

2151 Modulated efficacy CRISPRi reveals evolutionary conservation of essential gene expression-fitness relationships in bacteria

Hawkins, J. S.; Silvis, M. R.; Koo, B.-M.; Peters, J. M.; Jost, M.; Hearne, C. C.; Weissman, J.; Todor, H.; Gross, C. A.

10.1101/805333 — systems biology — Posted on 2019-10-15

2152 A unified framework for dopamine signals across timescales

Kim, H. R.; Malik, A. N.; Mikhael, J. G.; Bech, P.; Tsutsui-Kimura, I.; Sun, F.; Zhang, Y.; Li, Y.; Watabe-Uchida, M.; Gershman, S. J.; Uchida, N.

10.1101/803437 — neuroscience — Posted on 2019-10-15

2153 The STING pathway does not contribute to Pink1/parkin phenotypes in Drosophila

Lee, J. J.; Andreazza, S.; Whitworth, A.

10.1101/806265 — genetics — Posted on 2019-10-16

2154 Sex differentiation and a chromosomal inversion lead to cryptic diversity in Lake Tanganyika sardines

Junker, J.; Rick, J. A.; McIntyre, P. B.; Kimirei, I.; Sweke, E. A.; Mosille, J. B.; Werli, B.; Dinkel, C.; Mwaiko, S.; Seehausen, O.; Wagner, C. E.

10.1101/800904 — evolutionary biology — Posted on 2019-10-15

2155 While shoot herbivory mitigates, root herbivory exacerbates eutrophication’s impact on diversity in a grassland model

Crawford, M. S.; Schaegel, U. E.; May, F.; Wurst, S.; Grimm, V.; Jeltsch, F.

10.1101/799528 — ecology — Posted on 2019-10-15

2156 DNA demethylation is a driver for chick retina regeneration

Luz-Madrigal, A.; Grajales-Esquivel, E.; Tangeman, J.; Kosse, S.; Liu, L.; Wang, K.; Fausey, A.; Liang, C.; Tsonis, P. A.; Del Rio-Tsonis, K.

10.1101/804161 — developmental biology — Posted on 2019-10-15

2157 In situ protein identification and mapping using secondary ion mass spectrometry

Kotowska, A. M.; Williams, P. M.; Aylott, J. W.; Shard, A. G.; Alexander, M. R.; Scurr, D. J.

10.1101/803940 — biochemistry — Posted on 2019-10-15

2158 Menstrual hygiene management practice and factors affecting it among high school females in Ambo City, Oromia state, Ethiopia, 2018: A cross-sectional mixed method.

Ahmed, S.; Willi, W. M.; Abubekar, A.

10.1101/806422 — developmental biology — Posted on 2019-10-15

2159 Manganese-enhanced MRI (MEMRI) in breast and prostate cancers: exploring the potential role of calcium receptors.

Baio, G.; Fabbi, M.; Cilli, M.; Rosa, F.; Boccardo, S.; Valdora, F.; Salvi, S.; Basso, L.; Emionite, L.; Gianolio, E.; Aime, S.; Neumaier, C. E.

10.1101/806448 — cancer biology — Posted on 2019-10-15

2160 Transcriptional analysis of wheat seedlings inoculated with Fusarium culmorum under continual exposure to disease defence inductors

Antalova, Z.; Matusinsky, P.; Martinek, P.; Blesa, D.

10.1101/806430 — molecular biology — Posted on 2019-10-15

2161 Channel nuclear pore protein 54 directs sexual differentiation and neuronal wiring required for female reproductive behaviors in Drosophila

Haussmann, I.; Nallasivan, K.; Scocchia, D.; Civetta, A.; Soller, M.

10.1101/806380 — genetics — Posted on 2019-10-15

2162 Radiologic Evaluation of the Influence of Cleft Type on Nasal Dorsum Growth

Pu, L.; Liu, R.; Shi, B.; Low, D.; LI, C.

10.1101/806406 — developmental biology — Posted on 2019-10-15

2163 {-}{-}{-}{-}{-}Polyglutamine-related aggregates serve as a potent antigen source for cross presentation by dendritic cells

Navon, A.; Tabachnick-Cherny, S.; Berko, D.; Pinto, S.; Curato, C.; Wolf, Y.; Porat, Z.; Karmona, R.; Tirosh, B.; Jung, S.

10.1101/806414 — cell biology — Posted on 2019-10-15

2164 Reactive astrocyte-driven epileptogenesis is induced by microglia initially activated following status epilepticus

Sano, F.; Shigetomi, E.; Shinozaki, Y.; Tsuzukiyama, H.; Saito, K.; Mikoshiba, K.; Sugita, K.; Aihara, M.; Koizumi, S.

10.1101/806398 — neuroscience — Posted on 2019-10-15

2165 Cannabis use is associated with increased levels of soluble gp130 in schizophrenia but not in bipolar disorder

Szabo, A.; Akkouh, I. A.; Ueland, T.; Vik Lagerberg, T.; Dieset, I.; Bjella, T.; Aukrust, P.; Le Hellard, S.; Stavrum, A.-K.; Melle, I.; Andreassen, O. A.; Djurovic, S.

10.1101/806927 — pharmacology and toxicology — Posted on 2019-10-15

2166 Astrocyte-selective AAV-ADAMTS4 gene therapy combined with hindlimb rehabilitation promotes functional recovery after spinal cord injury

Griffin, J. M.; Fackelmeier, B.; Clemett, C.; Fong, D.; Mouravlev, A.; Young, D.; O'Carroll, S.

10.1101/797696 — neuroscience — Posted on 2019-10-15

2167 Polymorphisms in Brucella Carbonic anhydrase II mediate CO2 dependence and fitness in vivo

Garcia-Lobo, J. M.; Ortiz, Y.; Gonzalez-Riancho, C.; Seoane, A.; Arellano-Reynoso, B.; Sangari, F. J.

10.1101/804740 — microbiology — Posted on 2019-10-15

2168 Analysis of multi-tissue transcriptomes reveals candidate genes and pathways influenced by cerebrovascular diseases

Pan, Z.-L.; Chen, C.-Y.

10.1101/806893 — genomics — Posted on 2019-10-15

2169 Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation

Bawn, M.; Thilliez, G.; Wheeler, N.; Kirkwood, M.; Petrovska, L.; Dallman, T. J.; Hall, N.; Kingsley, R. A.

10.1101/804674 — genomics — Posted on 2019-10-15

2170 Exome-by-phenome-wide rare variant gene burden association with electronic health record phenotypes

Park, J.; Katz, N.; Zhang, X.; Lucas, A. M.; Verma, A.; Judy, R. L.; Kember, R. L.; Regeneron Genetics Center, ; Chen, J.; Damrauer, S. M.; Ritchie, M. D.; Rader, D. J.

10.1101/798330 — genomics — Posted on 2019-10-15

2171 Reconstructing the history of variation in effective population size along phylogenies.

Brevet, M.; Lartillot, N.

10.1101/793059 — evolutionary biology — Posted on 2019-10-15

2172 Egg activation triggers clearance of maternally deposited RNA binding proteins

Zavortink, M.; Rutt, L. N.; Dzitoyeva, S.; Barrington, C.; Bilodeau, D. Y.; Wang, M.; Chen, X. X. L.; Rissland, O. S.

10.1101/806968 — developmental biology — Posted on 2019-10-15

2173 Scientific societies advancing STEM workforce diversity: Lessons and Outcomes from the Minorities Affairs Committee of the American Society for Cell Biology

Segarra, V. A.; Blatch, S.; Boyce, M.; Carrero-Martinez, F.; Aguilera, R. J.; Leibowitz, M. J.; Zavala, M.; Hammonds-Odie, L.; Edwards, A.

10.1101/794818 — scientific communication and education — Posted on 2019-10-15

2174 Cathepsin G Degrades Synovial Fluid Lubricin: Relevance For Osteoarthritis Pathogenesis

Huang, S.; Thomsson, K. A.; Jin, C.; Alweddi, S.; Struglics, A.; Rolfson, O.; Bjorkman, L. I.; Kalamajsk, S.; Schmidt, T. A.; Jay, G. D.; Krawetz, R.; Karlsson, N. G.; Eisler, T.

10.1101/792184 — pathology — Posted on 2019-10-15

2175 Phylogenetic and structural diversity of aromatically dense pili from environmental metagenomes

Bray, M. S.; Wu, J.; Padilla, C. C.; Stewart, F. J.; Fowle, D. A.; Henny, C.; Simister, R. L.; Thompson, K. J.; Crowe, S. A.; Glass, J. B.

10.1101/668343 — microbiology — Posted on 2019-10-15

2176 The total fungal microbiome functionality

Starke, R.; Capek, P.; Morais, D.; Jehmlich, N.; Baldrian, P.

10.1101/804757 — ecology — Posted on 2019-10-15

2177 C-terminal tail polyglycylation and polyglutamylation alter microtubule mechanical properties

Wall, K. P.; Hart, H.; Lee, T.; Page, C.; Hawkins, T. L.; Hough, L. E.

10.1101/791194 — biophysics — Posted on 2019-10-15

2178 A cost-efficient open source laser engine for microscopy

Schroeder, D.; Deschamps, J.; Dasgupta, A.; Matti, U.; Ries, J.

10.1101/796482 — biophysics — Posted on 2019-10-15

2179 Hemispheric asymmetries in posterior alpha power reflect the selection and inhibition of spatial context information in working memory

Roesner, M.; Arnau, S.; Skiba, I.; Wascher, E.; Schneider, D.

10.1101/681031 — neuroscience — Posted on 2019-10-15

2180 A way around the exploration-exploitation dilemma

Peterson, E. J.; Verstynen, T. V.

10.1101/671362 — animal behavior and cognition — Posted on 2019-10-15

2181 Chemogenetic inhibition of a monosynaptic projection from the basolateral amygdala to the ventral hippocampus reduces appetitive and consummatory alcohol drinking behaviors

Ewin, S. E.; Almonte, A. G.; Bach, E. C.; Heaney, C. F.; Chappell, A. M.; Raab-Graham, K. F.; Weiner, J. L.

10.1101/529719 — neuroscience — Posted on 2019-10-15

2182 Manipulations of central amygdala neurotensin neurons alter the consumption of ethanol and sweet fluids in mice

Torruella-Suarez, M. L.; Vandenberg, J. R.; Cogan, E. S.; Tipton, G. J.; Teklezghi, A.; Dange, K.; Patel, G. K.; McHenry, J. A.; Hardaway, J. A.; Kantak, P. A.; Crowley, N. A.; DiBerto, J. F.; Faccidomo, S. P.; Hodge, C. W.; Stuber, G. D.; McElligott, Z. A.

10.1101/245274 — neuroscience — Posted on 2019-10-15

2183 Nucleotide inhibition of the pancreatic ATP-sensitive K+ channel explored with patch-clamp fluorometry

Usher, S.; Ashcroft, F. M.; Puljung, M. C.

10.1101/803999 — biophysics — Posted on 2019-10-15

2184 Impaired EAT-4 Vesicular Glutamate Transporter Leads to Defective Nocifensive Response of Caenorhabditis elegans to Noxious Heat

Leonelli, S.; Nkambeu, B.; Beaudry, F.

10.1101/620302 — neuroscience — Posted on 2019-10-15

2185 Is it Time to Switch Your T1W Sequence? Assessing the Impact of Prospective Motion Correction on the Reliability and Quality of Structural Imaging

Ai, L.; Craddock, R. C.; Tottenham, N.; Dyke, J. D.; Colcombe, S.; Milham, M.; Franco, A. R.

10.1101/666289 — neuroscience — Posted on 2019-10-15

2186 Assessing a causal relationship between circulating lipids and breast cancer risk: Mendelian randomization study

Johnson, K. E.; Siewert, K. M.; Klarin, D.; Damrauer, S. M.; The VA Million Veteran Program, ; Chang, K.-M.; Tsao, P. S.; Assimes, T. L.; Maxwell, K. N.; Voight, B. F.

10.1101/794594 — genomics — Posted on 2019-10-15

2187 A Multidimensional Array Representation of State-Transition Model Dynamics

Krijkamp, E.; Alarid-Escudero, F.; Enns, E.; Pechlivanoglou, P.; Hunink, M.; Jalal, H.

10.1101/670612 — epidemiology — Posted on 2019-10-15

2188 An EEG investigation of the trial-by-trial updating of complex knowledge structures

Richter, F. R.

10.1101/805887 — neuroscience — Posted on 2019-10-15

2189 Gut microbiota differently contributes to intestinal immune phenotype and systemic autoimmune progression in female and male lupus-prone mice

Johnson, B. M.; Gaudreau, M.-C.; Gudi, R. R.; Brown, R.; Gilkeson, G.; Vasu, C.

10.1101/787440 — immunology — Posted on 2019-10-15

2190 Parasite dispersal influences introgression rate

Dona, J.; Sweet, A.; Johnson, K.

10.1101/527226 — evolutionary biology — Posted on 2019-10-15

2191 Directed connectivity between primary and premotor areas underlying ankle force control in young and older adults

Spedden, M. E.; Beck, M. M.; Christensen, M. S.; Dietz, M. J.; Karabanov, A. N.; Geertsen, S. S.; Nielsen, J. B.; Lundbye-Jensen, J.

10.1101/804450 — neuroscience — Posted on 2019-10-15

2192 Genetic and bioinformatic approaches to characterize ethanol teratogenesis

Sidik, A.; Dixon, G. B.; Eberhart, J. K.

10.1101/805556 — developmental biology — Posted on 2019-10-15

2193 deSALT: fast and accurate long transcriptomic read alignment with de Bruijn graph-based index

Liu, B.; Liu, Y.; Li, J.; Guo, H.; Zang, T.; Wang, Y.

10.1101/612176 — bioinformatics — Posted on 2019-10-15

2194 IL2 enhances ex-vivo expanded regulatory T cell persistence after adoptive transfer

Furlan, S. N.; Singh, K.; Lopez, C.; Tkachev, V.; Hunt, D.; Hibbard, J.; Betz, K. M.; Blazar, B. R.; Trapnell, C.; Kean, L. S.

10.1101/805531 — immunology — Posted on 2019-10-15

2195 Great ape mutation spectra vary across the phylogeny and the genome due to distinct mutational processes that evolve at different rates

Goldberg, M. E.; Harris, K.

10.1101/805598 — genomics — Posted on 2019-10-15

2196 Stem Cell Activity And Regeneration In Roots Require Non-Cell Autonomous Regulation From The Ground Tissue

Sanchez-Corrionero, A.; Perez-Garcia, P.; Cabrera, J.; Silva-Navas, J.; Perianez-Rodriguez, J.; Gude, I.; del Pozo, J. C.; Moreno-Risueno, M. A.

10.1101/803973 — developmental biology — Posted on 2019-10-15

2197 Predicting agronomic traits and associated genomic regions in diverse rice landraces using marker stability

Orhobor, O. I.; Alexandrov, N. N.; Chebotarov, D.; Kretzschmar, T.; McNally, K. L.; Sanciangco, M. D.; King, R. D.

10.1101/805002 — bioinformatics — Posted on 2019-10-15

2198 Hepatic FoxOs induce apolipoprotein M and are required for sphingosine-1-phosphate to bind high density lipoproteins

Izquierdo, M. C.; Shanmugarajah, N.; Lee, S. X.; Haeusler, R.

10.1101/804336 — physiology — Posted on 2019-10-15

2199 Magia: Robust automated image processing and kinetic modeling toolbox for PET neuroinformatics

Karjalainen, T.; Tuisku, J.; Santavirta, S.; Kantonen, T.; Tuominen, L.; Hirvonen, J.; Hietala, J.; Rinne, J.; Nummenmaa, L.

10.1101/604835 — neuroscience — Posted on 2019-10-15

2200 Neural spiking for causal inference

Lansdell, B. J.; Kording, K. P.

10.1101/253351 — neuroscience — Posted on 2019-10-15

2201 Liking and left amygdala activity during food versus non-food processing are modulated by emotional context

Garcia-Garcia, I.; Kube, J.; Morys, F.; Schrimpf, A.; Kanaan, A. S.; Gaebler, M.; Villringer, A.; Dagher, A.; Horstmann, A.; Neumann, J.

10.1101/707844 — neuroscience — Posted on 2019-10-15

2202 Probing the neural dynamics of mnemonic representations in humans

Liu, W.; Kohn, N.; Fernandez, G.

10.1101/803718 — neuroscience — Posted on 2019-10-15

2203 Comparative genomics confirms a rare melioidosis human-to-human transmission event and reveals incorrect phylogenomic reconstruction due to polyclonality

Aziz, A.; Currie, B. J.; Mayo, M.; Sarovich, D. S.; Price, E. P.

10.1101/804344 — microbiology — Posted on 2019-10-15

2204 Malaria parasite immune evasion and adaptation to its mosquito host is influenced by the acquisition of multiple blood meals

Kwon, H.; Reynolds, R. A.; Simoes, M. L.; Dimopoulos, G.; Smith, R. C.

10.1101/801480 — microbiology — Posted on 2019-10-15

2205 An Improved Genome Assembly of the European Aspen Populus tremula

Schiffthaler, B.; Delhomme, N.; Bernhardsson, C.; Jenkins, J.; Jansson, S.; Ingvarsson, P.; Schmutz, J.; Street, N.

10.1101/805614 — genomics — Posted on 2019-10-15

2206 Longevity Relatives Count score defines heritable longevity carriers and suggest case improvement in genetic studies

van den Berg, N.; Rodriguez-Girondo, M.; Mandemakers, K.; Janssens, A. A. P. O.; Beekman, M.; Slagboom, P. E.

10.1101/609891 — genetics — Posted on 2019-10-15

2207 Nucleotide inhibition of the pancreatic ATP-sensitive K+ channel explored with patch-clamp fluorometry

Usher, S.; Ashcroft, F. M.; Puljung, M. C.

10.1101/803999 — biophysics — Posted on 2019-10-15

2208 Metage2Metabo: metabolic complementarity applied to genomes of large-scale microbiotas for the identification of keystone species

Belcour, A.; Frioux, C.; Aite, M.; Bretaudeau, A.; Siegel, A.

10.1101/803056 — bioinformatics — Posted on 2019-10-15

2209 CrispRdesignR: A Versatile Guide RNA Design Package in R for CRISPR/Cas9 Applications

Beeber, D.; Chain, F. J.

10.1101/805630 — bioinformatics — Posted on 2019-10-15

2210 MADloy: Robust detection of mosaic loss of chromosome Y from genotype-array-intensity data

Gonzalez, J. R.; Lopez-Sanchez, M.; Caceres, A.; Puig, P.; Esko, T.; Perez-Jurado, L. A.

10.1101/764845 — genomics — Posted on 2019-10-15

2211 Variant calling using NGS and sequence capture data for population and evolutionary genomic inferences in Norway Spruce (Picea abies)

Bernhardsson, C.; Wang, X.; Eklöf, H.; Ingvarsson, P. K.

10.1101/805994 — bioinformatics — Posted on 2019-10-15

2212 Frequency Conservation Score (FCS): the power of conservation and allele frequency for variant pathogenic prediction

Cabrera-Alarcon, J. L.; Enriquez, J. A.; Sanchez-Cabo, F.

10.1101/805051 — bioinformatics — Posted on 2019-10-15

2213 A computational approach for mapping heme biology in the context of hemolytic disorders

Humayun, F.; Domingo-Fernandez, D.; Abisheck Paul George, A.; Hopp, M.-T.; Syllwasschy, B. F.; Detzel, M.; Hoyt, C. T.; Hofmann-Apitius, M.; Imhof, D.

10.1101/804906 — bioinformatics — Posted on 2019-10-15

2214 GAIA: an integrated metagenomics suite

Paytuvi-Gallart, A.; Battista, E.; Scippacercola, F.; Aiese Cigliano, R.; Sanseverino, W.

10.1101/804690 — bioinformatics — Posted on 2019-10-15

2215 Unified inference of missense variant effects and gene constraints in the human genome

Huang, Y.-F.

10.1101/757468 — bioinformatics — Posted on 2019-10-15

2216 Volumetric fluorescence imaging in a human eye model by oblique scanning laser ophthalmoscope (oSLO): a feasibility study

Shao, W.; Song, W.; Yi, J.

10.1101/804237 — bioengineering — Posted on 2019-10-15

2217 Strand-specific single-cell methylomics reveals distinct modes of DNA demethylation dynamics during early mammalian development

Sen, M.; Mooijman, D.; Boisset, J.-C.; Chialastri, A.; Popovic, M.; Heindryckx, B.; Chuva de Sousa Lopes, S. M.; Dey, S. S.; van Oudenaarden, A.

10.1101/804526 — genomics — Posted on 2019-10-15

2218 A reduction in convergent extension underlies susceptibility to midfacial hypoplasia in the ethanol-sensitive mutant,

Sidik, A.; Dixon, G. B.; Eberhart, J. K.

10.1101/805556 — developmental biology — Posted on 2019-10-15

2219 The phase separation-dependent FUS interactome reveals nuclear and cytoplasmic function of liquid-liquid phase separation

Reber, S.; Lindsay, H.; Devoy, A.; Jutzi, D.; Mechtersheimer, J.; Domanski, M.; Mühlemann, O.; Barabino, S. M.; Ruepp, M.-D.

10.1101/806158 — molecular biology — Posted on 2019-10-15

2220 The Rho/Rac guanine nucleotide exchange factor Vav1 regulates HIF-1α and GLUT-1 expression and glucose uptake in the brain

Hong, J.; Kim, Y.; Lin, P. C.

10.1101/806307 — cell biology — Posted on 2019-10-15

2221 A thalamic reticular circuit for head direction cell tuning and spatial navigation

Vantomme, G.; Rovo, Z.; Cardis, R.; Beard, E.; Katsioudi, G.; Guadagno, A.; Perrenoud, V.; Fernandez, L. M. J.; Luthi, A.

10.1101/804575 — neuroscience — Posted on 2019-10-15

2222 In pursuit of visual attention: SSVEP frequency-tagging moving targets

de Lissa, P.; Caldara, R.; Nicholls, V.; Miellet, S.

10.1101/804708 — neuroscience — Posted on 2019-10-15

2223 Feasibility of spiral fMRI based on an LTI gradient model

Graedel, N. N.; Kasper, L.; Engel, M.; Nussbaum, J.; Wilm, B. J.; Pruessmann, K. P.; Vannesjo, S. J.

10.1101/805580 — neuroscience — Posted on 2019-10-15

2224 The neurocognitive gains of diagnostic reasoning training using simulated interactive veterinary cases.

Nassar, M.

10.1101/650499 — neuroscience — Posted on 2019-10-15

2225 OdoBD: An online database for the dragonflies and damselflies of Bangladesh

Shah, M. N. A.; Khan, M. K.

10.1101/804658 — ecology — Posted on 2019-10-15

2226 Branched evolution and genomic intratumor heterogeneity in the pathogenesis of cutaneous T-cell lymphoma

Iyer, A.; Hennessey, D.; O'Keefe, S.; Patterson, J.; Wang, W.; Wong, G. K.-S.; Gniadecki, R.

10.1101/804351 — cancer biology — Posted on 2019-10-15

2227 In silico identification of potential inhibitors against human 2’-5’-oligoadenylate synthetase (OAS) proteins

Gonzalez Restrepo, K. J.; Moncada Giraldo, D. M.; Gutierrez, J. B.

10.1101/804716 — bioinformatics — Posted on 2019-10-15

2228 pydca v1.0: a comprehensive software for Direct Coupling Analysis of RNA and Protein Sequences

Zerihun, M. B.; Pucci, F.; Peter, E. K.; Schug, A.

10.1101/805523 — bioinformatics — Posted on 2019-10-15

2229 Same same but different: a web-based deep learning application for the histopathologic distinction of cortical malformations

Kubach, J.; Muhlebner-Fahrngruber, A.; Soylemezoglu, F.; Miyata, H.; Niehusmann, P.; Honavar, M.; Rogerio, F.; Kim, S.-H.; Aronica, E.; Garbelli, R.; Vilz, S.; Popp, A.; Walcher, S.; Christoph, N.; Scholz, M.; Kuerten, S.; Schropp, V.; Roeder, S.; Eichhorn, P.; Eckstein, M.; Brehmer, A.; Kobow, K.; Coras, R.; Bluemcke, I.; Jabari, S.

10.1101/804682 — pathology — Posted on 2019-10-15

2230 From a deep learning model back to the brain - inferring morphological markers and their relation to aging

Levakov, G.; Rosenthal, G.; Riklin Raviv, T.; Shelef, I.; Avidan, G.

10.1101/803742 — neuroscience — Posted on 2019-10-15

2231 DeepCINAC: a deep-learning-based Python toolbox for inferring calcium imaging neuronal activity based on movie visualization

Denis, J.; Dard, R. F.; Quiroli, E.; Cossart, R.; Picardo, M. A.

10.1101/803726 — neuroscience — Posted on 2019-10-15

2232 Balance Control Mechanisms Do Not Benefit From Successive Stimulation Of Different Sensory Systems

Cyr, J.-P.; Anctil, N.; Simoneau, M.

10.1101/803916 — neuroscience — Posted on 2019-10-15

2233 XTRACT - Standardised protocols for automated tractography and connectivity blueprints in the human and macaque brain

Warrington, S.; Bryant, K. L.; Khrapitchev, A. A.; Sallet, J.; Charquero-Ballester, M.; Douaud, G.; Jbabdi, S.; Mars, R. B.; Sotiropoulos, S. N.

10.1101/804641 — neuroscience — Posted on 2019-10-15

2234 Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules

Baker, J. L.; Morton, J. L.; Dinis, M.; Alvarez, R.; Tran, N. C.; Knight, R.; Edlund, A.

10.1101/804443 — microbiology — Posted on 2019-10-15

2235 Net effects of field and landscape scale habitat on insect and bird damage to sunflowers

Kross, S.; Martinico, B.; Bourbour, R. P.; Townsend, J. M.; McColl, C.; Kelsey, R.

10.1101/804328 — ecology — Posted on 2019-10-15

2236 T-Gene: Improved target gene prediction

O'Connor, T.; Grant, C. E.; Boden, M.; Bailey, T. L.

10.1101/803221 — bioinformatics — Posted on 2019-10-15

2237 A-Star, an Argonaute-directed System for Rare SNV Enrichment and Detection

Liu, Q.; Guo, X.; Xun, G.; Li, Z.; Chong, Y.; Yang, L.; Wang, H.; Zhang, F.; Luo, S.; Deng, Z.; Li, K.; Feng, Y.

10.1101/803841 — bioengineering — Posted on 2019-10-15

2238 Optimized double emulsion flow cytometry with high-throughput single droplet isolation

Brower, K. K.; Carswell-Crumpton, C.; Klemm, S.; Cruz, B.; Kim, G.; Calhoun, S. G.; Nichols, L.; Fordyce, P. M.

10.1101/803460 — bioengineering — Posted on 2019-10-15

2239 Treatment with β3 adrenergic agonists reverses impaired cardiac myocyte Na+ export and improves severely decompensated heart failure; a clinical application of an experimental finding

Fry, N. A. S.; Liu, C.-C.; Garcia, A.; Hamilton, E. J.; Karimi Galougahi, K.; Kim, Y. J.; Harris, J. L.; Nelson, G. I. C.; Whalley, D. W.; Bundgaard, H.; Rasmussen, H. H.

10.1101/804245 — physiology — Posted on 2019-10-15

2240 GABA-ergic dynamics in human frontotemporal networks confirmed by pharmaco-magnetoencephalography.

Adams, N. E.; Hughes, L. E.; Phillips, H. N.; Shaw, A. D.; Murley, A. G.; Nesbitt, D.; Cope, T. E.; Bevan-Jones, W. R.; Passamonti, L.; Rowe, J. B.

10.1101/803924 — neuroscience — Posted on 2019-10-15

2241 Genetic regulators of mineral amount in Nelore cattle muscle predicted by a new co-expression and regulatory impact factor approach

Afonso, J.; Fortes, M. R. S.; Reverter-Gomez, A.; Diniz, W.; Cesar, A.; de Lima, A.; Petrini, J.; de Souza, M.; Coutinho, L.; Mourao, G.; Zerlotini, A.; Gromboni, C.; Nogueira, A. R.; Regitano, L.

10.1101/804419 — genomics — Posted on 2019-10-15

2242 Monitoring the prolonged TNF stimulation in space and time with topological-functional networks

Mavropoulos Papoudas, S.; Papanikolaou, N.; Nikolaou, C.

10.1101/803817 — bioinformatics — Posted on 2019-10-15

2243 Protocol for Community-created Public MS/MS Reference Library Within the GNPS Infrastructure

Vargas, F.; Weldon, K. C.; Sikora, N.; Wang, M.; Zhang, Z.; Gentry, E. C.; Panitchpakdi, M. W.; Caraballo, M.; Dorrestein, P. C.; Jarmusch, A. K.

10.1101/804401 — bioinformatics — Posted on 2019-10-15

2244 Antifungal susceptibility testing of Aspergillus niger on silicon microwells by intensity-based reflectometric interference spectroscopy

Heuer, C.; Leonard, H.; Nitzan, N.; Lavy-Alperovitch, A.; Massad-Ivanir, N.; Segal, E.

10.1101/804385 — bioengineering — Posted on 2019-10-15

2245 Orientation to polarized light in tethered flying honeybees

Kobayashi, N.; Okada, R.; Sakura, M.

10.1101/803809 — animal behavior and cognition — Posted on 2019-10-15

2246 Molecular mechanism of attenuation of heat shock transcription factor 1 activity

Kmiecik, S. W.; Le Breton, L.; Mayer, M. P.

10.1101/803361 — molecular biology — Posted on 2019-10-15

2247 Genome dashboards: Framework and Examples

Li, Z.; Sun, R.; Bishop, T. C.

10.1101/803403 — genomics — Posted on 2019-10-15

2248 Biallelic mutations in M1AP are a frequent cause of meiotic arrest leading to male infertility

Wyrwoll, M. J.; Temel, S. G.; Nagirnaja, L.; Oud, M. S.; Lopes, A. M.; van der Heijden, G. W.; Rotte, N.; Wistuba, J.; Wöste, M.; Ledig, S.; Krenz, H.; Smits, R. M.; Carvalho, F.; Goncalves, J.; Fietz, D.; Türkgenc, B.; Ergören, M. C.; Cetinkaya, M.; Basar, M.; Kahraman, S.; Pilatz, A.; Röpke, A.; Dugas, M.; Kliesch, S.; Neuhaus, N.; Aston, K. I.; Conrad, D. F.; Veltman, J. A.; Friedrich, C.; Tüttelmann, F.

10.1101/803346 — genetics — Posted on 2019-10-15

2249 Characterization of xyloglucan-specific fucosyltransferase activity in Golgi-enriched microsomal preparations from wheat seedlings

Wiemels, R. E.; Zeng, W.; Jiang, N.; Faik, A.

10.1101/803395 — biochemistry — Posted on 2019-10-15

2250 A Chemoenzymatic Method for Glycoproteomic N-glycan Type Quantitation

Li, H.; Li, L.; Cheng, K.; Ning, Z.; Mayne, J.; Zhang, X.; Walker, K.; Chen, R.; Twine, S.; Li, J.; Figeys, D.

10.1101/803494 — systems biology — Posted on 2019-10-15

2251 Comparison of tuning properties of gamma and high-gamma power in local field potential (LFP) versus electrocorticogram (ECoG) in visual cortex

Dubey, A.; Ray, S.

10.1101/803429 — neuroscience — Posted on 2019-10-15

2252 Population-specific causal disease effect sizes in functionally important regions impacted by selection

Shi, H.; Gazal, S.; Kanai, M.; Koch, E. M.; Schoech, A. P.; Kim, S. S.; Luo, Y.; Amariuta, T.; Okada, Y.; Raychaudhuri, S.; Sunyaev, S. R.; Price, A. L.

10.1101/803452 — genetics — Posted on 2019-10-15

2253 PRIGSA2: Improved version of Protein Repeat Identification by Graph Spectral Analysis

Chakrabarty, B.; Parekh, N.

10.1101/803304 — bioinformatics — Posted on 2019-10-15

2254 Collective singing dynamics in a competition context drive song plasticity

Alcami, P.; Ma, S.; Gahr, M.

10.1101/803411 — animal behavior and cognition — Posted on 2019-10-15

2255 IL2 enhances ex-vivo expanded regulatory T cell persistence after adoptive transfer

Kean, L. S.; Furlan, S. N.

10.1101/805531 — immunology — Posted on 2019-10-15

2256 The use of CRISPR for variant specificity in the genetic diagnosis of primary immunodeficiency disease (PID)

Mann, T.; Smith, A.; Spencer, S.; Thaventhiran, J.; Russell, A.

10.1101/804732 — immunology — Posted on 2019-10-15

2257 Intracellular Neutralization of Ricin Toxin by Single Domain Antibodies Targeting the Active Site Pocket

Rudolph, M. J.; Czajka, T. J.; Davis, S.; Nguyen, C. M. T.; Li, X.-p.; Tumer, N.; Vance, D. J.; MANTIS, N. J.

10.1101/805754 — immunology — Posted on 2019-10-15

2258 NOX4 regulates TGFβ-induced proliferation and self-renewal in glioblastoma stem cells.

Garcia-Gomez, P.; Dadras, M. S.; Bellomo, C.; Mezheyeuski, A.; Tzavlaki, K.; Moren, A.; Caja Puigsubira, L.

10.1101/804013 — cancer biology — Posted on 2019-10-15

2259 Evolutionary history of dimethylsulfoniopropionate (DMSP) demethylation enzyme DmdA in marine bacteria

Hernández Javier, L.; Vicens, A.; Eguiarte, L. E.; Souza, V.; De Anda, V.; González, J. M.

10.1101/766360 — evolutionary biology — Posted on 2019-10-15

2260 EWI-2 Inhibits Cell-Cell Fusion at the HIV-1 Virological Presynapse

Whitaker, E. E.; Matheson, N. J.; Perlee, S.; Munson, P. B.; Symeonides, M.; Thali, M.

10.1101/296251 — microbiology — Posted on 2019-10-15

2261 ChIP-seq and RNA-seq for complex and low-abundance tree buds reveal chromatin and expression co-dynamics during sweet cherry bud dormancy

Vimont, N.; Quah, F. X.; Schoepfer, D.; Roudier, F.; Dirlewanger, E.; Wigge, P. A.; Wenden, B.; Cortijo, S.

10.1101/334474 — plant biology — Posted on 2019-10-15

2262 Genetic stratification of depression in UK Biobank suggests a subgroup linked to age of natural menopause

Howard, D. M.; Folkersen, L.; Coleman, J. R. I.; Adams, M. J.; Glanville, K.; Werge, T.; Hagenaars, S. P.; Han, B.; Porteous, D. J.; Campbell, A.; Clarke, T.-K.; Breen, G.; Sullivan, P. F.; Wray, N. R.; Lewis, C. M.; McIntosh, A. M.

10.1101/134601 — genetics — Posted on 2019-10-15

2263 Transposable elements contribute to regulatory hub stress-related long noncoding RNAs in Maize

Lv, Y.; Hu, F.; Zhou, Y.; Wu, F.; Zhou, L.; Gaut, B. S.

10.1101/801704 — plant biology — Posted on 2019-10-15

2264 Alanine, arginine, and proline but not glutamine are the feed-back regulators in the liver-alpha cell axis in mice

Galsgaard, K. D.; Jepsen, S. L.; Kjeldsen, S.; Pedersen, J.; Wewer Albrechtsen, N. J.; Holst, J. J.

10.1101/792119 — physiology — Posted on 2019-10-15

2265 Sex-specific pathophysiological mGluR5-dependent Aβ oligomer signaling in Alzheimer mice

Abd-Elrahman, K. S.; Hamilton, A.; de Souza, J. M.; Albaker, A.; Ribeiro, F. M.; Ferguson, S. S. G.

10.1101/803262 — neuroscience — Posted on 2019-10-15

2266 Multimodal Study of the Effects of Varying Task Load Utilizing EEG, GSR and Eye-Tracking

Born, J.; Ramachandran, B. R. N.; Romero Pinto, S. A.; Rama, R.; Winkler, S.

10.1101/798496 — neuroscience — Posted on 2019-10-15

2267 A three-years assessment of Ixodes ricinus-borne pathogens in a French peri-urban forest

Lejal, E.; Marsot, M.; Chalvet-Monfray, K.; Cosson, J.-F.; Moutailler, S.; Vayssier-Taussat, M.; Pollet, T.

10.1101/597013 — epidemiology — Posted on 2019-10-15

2268 Embryonic organoids recapitulate early heart organogenesis

Rossi, G.; Boni, A.; Guiet, R.; Girgin, M.; Kelly, R. G.; Lutolf, M. P.

10.1101/802181 — developmental biology — Posted on 2019-10-15

2269 A tissue-specific collaborative mixed model for jointly analyzing multiple tissues in transcriptome-wide association studies

Shi, X.; Chai, X.; Yang, Y.; Cheng, Q.; Jiao, Y.; Huang, J.; Yang, C.; Liu, J.

10.1101/789396 — bioinformatics — Posted on 2019-10-15

2270 Inference of population genetic structure from temporal samples of DNA

Francois, O.; Liegeois, S.; Demaille, B.; Jay, F.

10.1101/801324 — evolutionary biology — Posted on 2019-10-15

2271 Nucleotide inhibition of the pancreatic ATP-sensitive K+ channel explored with patch-clamp fluorometry

Usher, S.; Ashcroft, F. M.; Puljung, M. C.

10.1101/803999 — biophysics — Posted on 2019-10-15

2272 SOFIevaluator: a strategy for the quantitative quality assessment of SOFI data

Moeyaert, B.; Vandenberg, W.; Dedecker, P.

10.1101/802199 — biophysics — Posted on 2019-10-15

2273 DAMEfinder: A Method to Detect Differential Allele-Specific Methylation

Orjuela, S.; Machlab, D.; Menigatti, M.; Marra, G.; Robinson, M. D.

10.1101/800383 — bioinformatics — Posted on 2019-10-15

2274 Polarella glacialis genomes encode tandem repeats of single-exon genes with functions critical to adaptation of dinoflagellates

Stephens, T. G.; Gonzalez-Pech, R. A.; Cheng, Y.; Mohamed, A. R.; Burt, D. W.; Bhattacharya, D.; Ragan, M. A.; Chan, C. X.

10.1101/704437 — genomics — Posted on 2019-10-15

2275 Urbanization and market-integration have strong, non-linear effects on metabolic health in the Turkana

Lea, A. J.; Martins, D.; Kamau, J.; Gurven, M.; Ayroles, J.

10.1101/756866 — evolutionary biology — Posted on 2019-10-15

2276 A native prokaryotic voltage-dependent calcium channel with a novel selectivity filter sequence

Shimomura, T.; Yonekawa, Y.; Nagura, H.; Tateyama, M.; Fujiyoshi, Y.; Irie, K.

10.1101/783647 — biophysics — Posted on 2019-10-15

2277 A physics-based energy function allows the computational redesign of a PDZ domain

Opuu, V.; Sun, Y. J.; Hou, T.; Panel, N.; Fuentes, E. J.; Simonson, T.

10.1101/790667 — biophysics — Posted on 2019-10-15

2278 Enhancing single-cell cellular state inference by incorporating molecular network features

Dong, J.; Zhou, P.; Wu, Y.; Wang, W.; Chen, Y.; Zhou, X.; Xie, H.; Gao, Y.; Lu, J.; Yang, J.; Zhang, X.; Wen, L.; Fu, W.; Li, T.; Tang, F.

10.1101/699959 — bioinformatics — Posted on 2019-10-15

2279 CoRNeA: A pipeline to decrypt the protein-protein interaction from amino acid sequence information

Chopra, K.; Burdak, B.; Sharma, K.; Kembhavi, A.; Mande, S.; Chauhan, R.

10.1101/741280 — bioinformatics — Posted on 2019-10-15

2280 Flexibility of intrinsically disordered degrons in AUX/IAA proteins reinforces auxin co-receptor assemblies

Niemeyer, M.; Moreno Castillo, E.; Ihling, C. H.; Iacobucci, C.; Wilde, V.; Hellmuth, A.; Hoehenwarter, W.; Samodelov, S. L.; Zurbriggen, M. D.; Kastritis, P. L.; Sinz, A.; Calderon Villalobos, L. I. A.

10.1101/787770 — biochemistry — Posted on 2019-10-15

2281 Empathic contagious pain and consolation in laboratory rodents: species and sex comparisons

Du, R.; Luo, W.-J.; Geng, K.-W.; Li, C.-L.; Yu, Y.; Wei, N.; He, T.; Chen, J.

10.1101/745299 — animal behavior and cognition — Posted on 2019-10-15

2282 Dopaminergic neurons mediate male Drosophila courtship motivational state

Xia, W. G.

10.1101/733733 — neuroscience — Posted on 2019-10-15

2283 New Additions to the CRISPR Toolbox: CRISPR-CLONInG and CRISPR-CLIP for Donor Construction in Genome Editing

Shola, D. T. N.; Yang, C.; Kewaldar, V.-S.; Kar, P.; Bustos, V.

10.1101/746826 — molecular biology — Posted on 2019-10-15

2284 Fungal hyphae colonization by Bacillus subtilis relies on biofilm matrix components

Kjeldgaard, B.; Listian, S. A.; Ramaswamhi, V.; Richter, A.; Kiesewalter, H. T.; Kovacs, A. T.

10.1101/722272 — microbiology — Posted on 2019-10-15

2285 Pretreatment with yeast derived complex dietary-polysaccharide leads to suppressed gut inflammation, altered microbiota composition and increased immune regulatory short-chain fatty acid production in C57BL/6 mice

Gudi, R.; Suber, J.; Brown, R.; Johnson, B.; Vasu, C.

10.1101/719112 — immunology — Posted on 2019-10-15

2286 Systematic profiling of full-length immunoglobulin and T-cell receptor repertoire diversity in rhesus macaque through long read transcriptome sequencing

Brochu, H.; Tseng, E.; Smith, E.; Thomas, M. J.; Jones, A.; Diveley, K.; Law, L.; Hansen, S. G.; Picker, L.; Gale, M.; Peng, X.

10.1101/782938 — immunology — Posted on 2019-10-15

2287 Evolutionary and biochemical analyses reveal conservation of the Brassicaceae telomerase ribonucleoprotein complex

Dew-Budd, K.; Cheung, J.; Palos, K.; Forsythe, E. S.; Beilstein, M. A.

10.1101/760785 — genetics — Posted on 2019-10-15

2288 Fitness functions, genetic and non-genetic inheritance, and why ecological dynamics and evolution are inevitably linked

Coulson, T.; Potter, T.; Felmy, A.

10.1101/762658 — evolutionary biology — Posted on 2019-10-15

2289 Individual Learning Phenotypes Drive Collective Cognition

Cook, C. N.; Lemanski, N. J.; Mosqueiro, T.; Ozturk, C.; Gadau, J.; Pinter-Wollman, N.; Smith, B. H.

10.1101/761676 — animal behavior and cognition — Posted on 2019-10-15

2290 Medial prefrontal cortex represents the object-based cognitive map when remembering an egocentric target location

Zhang, B.; Naya, Y.

10.1101/680199 — neuroscience — Posted on 2019-10-15

2291 Social interactions across groups of colobus monkeys (Colobus vellerosus) explain similarities in their gut microbiomes

Wikberg, E.; Christie, D.; Sicotte, P.; Ting, N.

10.1101/717934 — microbiology — Posted on 2019-10-15

2292 Progressive alignment with Cactus: a multiple-genome aligner for the thousand-genome era

Armstrong, J.; Hickey, G.; Diekhans, M.; Deran, A.; Fang, Q.; Xie, D.; Feng, S.; Stiller, J.; Genereux, D.; Johnson, J.; Marinescu, V. D.; Haussler, D.; Alföldi, J.; Lindblad-Toh, K.; Karlsson, E.; Jarvis, E. D.; Zhang, G.; Paten, B.

10.1101/730531 — genomics — Posted on 2019-10-15

2293 Releasing a preprint is associated with more attention and citations for the peer-reviewed article

Fu, D. Y.; Hughey, J. J.

10.1101/699652 — scientific communication and education — Posted on 2019-10-15

2294 Growth and rapid succession of methanotrophs effectively limit methane release during lake overturn

Mayr, M. J.; Zimmermann, M.; Dey, J.; Brand, A.; Wehrli, B.; Buergmann, H.

10.1101/707836 — microbiology — Posted on 2019-10-15

2295 Taxon appearance from extraction and amplification steps demonstrates the value of multiple controls in tick microbiome analysis

Lejal, E.; Estrada-Pena, A.; Marsot, M.; Cosson, J.-F.; Rue, O.; Mariadassou, M.; Midoux, C.; Vayssier-Taussat, M.; Pollet, T.

10.1101/714030 — microbiology — Posted on 2019-10-15

2296 Identifying the drivers of computationally detected correlated evolution among sites under antibiotic selection

Dench, J.; Hinz, A.; Aris-Brosou, S.; Kassen, R.

10.1101/474536 — evolutionary biology — Posted on 2019-10-15

2297 Community Standards for Open Cell Migration Data

Gonzalez-Beltran, A. N.; Masuzzo, P.; Ampe, C.; Bakker, G.-J.; Besson, S.; Eibl, R. H.; Friedl, P.; Gunzer, M.; Kittisopikul, M.; Le Devedec, S. E.; Leo, S.; Moore, J.; Paran, Y.; Prilusky, J.; Rocca-Serra, P.; Roudot, P.; Schuster, M.; Sergeant, G.; Stromblad, S.; Swedlow, J. R.; van Erp, M.; Van Troys, M.; Zaritsky, A.; Sansone, S.-A.; Martens, L.

10.1101/803064 — bioinformatics — Posted on 2019-10-14

2298 Structure of SWI/SNF chromatin remodeller RSC bound to a nucleosome

Wagner, F. R.; Dienemann, C.; Wang, H.; Stuetzer, A.; Tegunov, D.; Urlaub, H.; Cramer, P.

10.1101/800508 — molecular biology — Posted on 2019-10-14

2299 Deteriogenic flora of the Phlegraean Fields Archaeological Park: ecological analysis and management guidelines

MOTTI, R.; Bonanomi, G.; Stinca, A.

10.1101/804823 — ecology — Posted on 2019-10-14

2300 Realistic fisheries management reforms could mitigate the impacts of climate change in most countries

Free, C. M.; Mangin, T.; Ojea, E.; Garcia Molinos, J.; Costello, C.; Gaines, S. D.

10.1101/804831 — ecology — Posted on 2019-10-14

2301 Identification of a small molecule that stimulates human beta-cell proliferation and insulin secretion, and protects against cytotoxic stress in rat insulinoma cells

Hohmeier, H. E.; Zhang, L.; Taylor, B.; Stephens, S.; McNamara, P.; Laffitte, B.; Newgard, C.

10.1101/804807 — cell biology — Posted on 2019-10-14

2302 ADHD symptoms and their neurodevelopmental correlates in children born very preterm

Montagna, A.; Karolis, V.; Batalle, D.; Counsell, S.; Rutherford, M.; Arulkumaran, S.; Happe, F.; Edwards, D.; Nosarti, C.

10.1101/804799 — neuroscience — Posted on 2019-10-14

2303 Dillenia indica fruit extract has Glucose and Cholesterol Lowering effects

KHAN, S.; Bhowmik, A.; Rhaman, S. B.; Gan, S. H.; Rokeya, B.

10.1101/804815 — pharmacology and toxicology — Posted on 2019-10-14

2304 Cognition across the lifespan: Aging and gender differences

Nichols, E. S.; Wild, C. J.; Owen, A. M.; Soddu, A.

10.1101/804765 — neuroscience — Posted on 2019-10-14

2305 Detection of novel HIV-1 drug resistance mutations by support vector analysis of deep sequence data and experimental validation

Avino, M.; Ndashimye, E.; Lizotte, D. J.; Olabode, A. S.; Gibson, R. M.; Meadows, A. A.; Kityo, C. M.; Nabulime, E.; Kyeyune, F.; Nankya, I.; Quinones-Mateu, M. E.; Arts, E. J.; Poon, A. F.

10.1101/804781 — microbiology — Posted on 2019-10-14

2306 Estimating relative CWD susceptibility and disease progression in farmed whitetail deer with rare PRNP alleles

Haley, N. J.; Merrett, K.; Buros Stein, A. J.; Simpson, D.; Carlson, A.; Mitchell, G.; Staskevicius, A.; Nichols, T.; Lehmkuhl, A.; Thomsen, B.

10.1101/804773 — microbiology — Posted on 2019-10-14

2307 Bees support farming. Does farming support bees?

Virkar, P. S.; Siddhu, E.; Uniyal, V. P.

10.1101/804856 — ecology — Posted on 2019-10-14

2308 Open-source 3D printed air-jet for generating monodispersed alginate microhydrogels

Hadley, D. J.; Gabriel, M. H.; Campbell, K. T.; Silva, E. A.

10.1101/804849 — bioengineering — Posted on 2019-10-14

2309 The deubiquitinating enzymes UBP12 and UBP13 negatively regulate the activity of the ubiquitin-dependent peptidases DA1, DAR1 and DAR2

Inze, D.; Vanhaeren, H.; Chen, Y.; Vermeersch, M.; De Vleeschhauwer, V.; Persiau, G.; Eeckhout, D.; De Jaeger, G.; Gevaert, K.

10.1101/802678 — plant biology — Posted on 2019-10-14

2310 Reduced RNA turnover as a driver of cellular senescence

Mullani, N.; Costallat, M.; Batsche, E.; Porozhan, Y.; Guerrera, C.; Goodhardt, M.; Cenci, G.; Muchardt, C.

10.1101/800128 — molecular biology — Posted on 2019-10-14

2311 P. falciparum gametocyte density and infectivity in peripheral blood and skin tissue of naturally infected parasite carriers

Meibalan, E.; Barry, A.; Gibbins, M. P.; Awandu, S.; Meerstein-Kessel, L.; Achcar, F.; Bopp, S.; moxon, C.; Diarra, A.; Debe, S.; Ouedraogo, N.; Barry-Some, I.; Badoum, E.; Fagnima, T.; Lanke, K. H. W.; Goncalves, B. P.; Bradley, J.; Drakeley, C.; Wirth, D. F.; Guelbeogo, W. M.; Tiono, A.; Marti, M.; Bousema, T.

10.1101/803296 — microbiology — Posted on 2019-10-14

2312 The temperature dependence of platelet metabolism

Johannsson, F.; Yurkovich, J. T.; Guthmundsson, S.; Sigurjonsson, O. E.; Rolfsson, O.

10.1101/802660 — biochemistry — Posted on 2019-10-14

2313 Can we assume the gene expression profile as a proxy for signaling network activity?

Piran, M.; Karbalaee, R.; Piran, M.; Aldahdooh, J.; Mirzaie, M.; Ansari-Pour, N.; Tang, J.; Jafari, M.

10.1101/643866 — systems biology — Posted on 2019-10-14

2314 Heterotrimeric G proteins promote FLS2 protein accumulation through inhibition of FLS2 autophagic degradation

Miller, J. C.; Lawrence, S. A.; Clay, N. K.

10.1101/438135 — plant biology — Posted on 2019-10-14

2315 Improving imputation quality in BEAGLE for crop and livestock data

Pook, T.; Mayer, M.; Geibel, J.; Weigend, S.; Cavero, D.; Schön, C.-C.; Simianer, H.

10.1101/577338 — genetics — Posted on 2019-10-14

2316 An efficient analytical reduction of detailed nonlinear neuron models

Amsalem, O.; Eyal, G.; Rogozinski, N.; Gevaert, M.; Kumbhar, P.; Schurmann, F.; Segev, I.

10.1101/506485 — neuroscience — Posted on 2019-10-14

2317 Interneuronal correlations dynamically adjust to task demands at multiple time-scales

Ben Hadj Hassen, S.; Gaillard, C.; Astrand, E.; Wardak, C.; Ben Hamed, S.

10.1101/547802 — neuroscience — Posted on 2019-10-14

2318 Prefrontal attentional saccades explore space at an alpha rhythm

Gaillard, C.; Ben Hadj Hassen, S.; Di Bello, F.; Bihan-Poudec, Y.; VanRullen, R.; Ben Hamed, S.

10.1101/637975 — neuroscience — Posted on 2019-10-14

2319 Co-opted transposons help perpetuate conserved higher-order chromosomal structures

Choudhary, M. N.; Friedman, R. Z.; Wang, J. T.; Jang, H. S.; Zhuo, X.; Wang, T.

10.1101/485342 — genomics — Posted on 2019-10-14

2320 State-dependent differences in the frequency of TMS-evoked potentials

Stanfield, C. T.; Wiener, M.

10.1101/614826 — neuroscience — Posted on 2019-10-14

2321 Determinants of Staphylococcus aureus PSMα3 Cross-α Amyloid Toxicity

Tayeb-Fligelman, E.; Salinas, N.; Tabachnikov, O.; Landau, M.

10.1101/452011 — biochemistry — Posted on 2019-10-14

2322 A non-spatial account of place and grid cells based on clustering models of concept learning

Mok, R. M.; Love, B. C.

10.1101/421842 — neuroscience — Posted on 2019-10-14

2323 Influence of prior beliefs on perception in early psychosis: effects of illness stage and hierarchical level of belief

Haarsma, J.; Knolle, F.; Griffin, J.; Taverne, H.; Mada, M.; Goodyer, I.; Neuroscience in Psychiatry Network, ; Fletcher, P.; Murray, G.

10.1101/421891 — neuroscience — Posted on 2019-10-14

2324 Investigating Protein-Protein Allosteric Network using Current-Flow Scheme

Botello-Smith, W. M.; Luo, Y.

10.1101/259572 — biophysics — Posted on 2019-10-14

2325 Prediction of the functional impact of missense variants in BRCA1 and BRCA2 with BRCA-ML

Hart, S. N.; Polley, E. C.; Shimelis, H.; Yadav, S.; Couch, F. J.

10.1101/792754 — bioinformatics — Posted on 2019-10-14

2326 Reported CCR5-{triangleup}32 deviation from Hardy-Weinberg equilibrium is explained by poor genotyping of rs62625034

Tanigawa, Y.; Rivas, M. A.

10.1101/791517 — genetics — Posted on 2019-10-14

2327 Allosteric communications between domains modulate activity of matrix metalloprotease-1

Kumar, L.; Nash, A.; Harms, C.; Planas, J.; Wright, D.; Klein-Seetharaman, J.; Sarkar, S. K.

10.1101/804559 — biophysics — Posted on 2019-10-14

2328 Runx1 promotes scar deposition and inhibits myocardial proliferation and survival during zebrafish heart regeneration

Koth, J.; Wang, X.; Killen, A. C.; Stockdale, W. T.; Potts, H. G.; Jefferson, A.; Bonkhofer, F.; Riley, P. R.; Patient, R.; Gottgens, B.; Mommersteeg, M. T. M.

10.1101/799163 — developmental biology — Posted on 2019-10-14

2329 Single-cell multiomics sequencing reveals the functional regulatory landscape of early embryos

Wang, Y.; Yuan, P.; Yan, Z.; Yang, M.; Huo, Y.; Nie, Y.; Zhu, X.; Yan, L.; Qiao, J.

10.1101/803890 — developmental biology — Posted on 2019-10-14

2330 Effects of substrate stiffness on the biological behavior of human umbilical vein endothelial cells

Pei, H.; Li, L.; Liu, K.; Wang, W.; Jiang, B.; Li, Y.; Zuo, L.

10.1101/803312 — cell biology — Posted on 2019-10-14

2331 Nucleotide inhibition of the pancreatic ATP-sensitive K+ channel explored with patch-clamp fluorometry

Usher, S.; Ashcroft, F. M.; Puljung, M. C.

10.1101/803999 — biophysics — Posted on 2019-10-14

2332 \"Viscotaxis\" - Directed Migration of Mesenchymal Stem Cells in Response to Loss Modulus Gradient

Shirke, P. U.; Goswami, H.; Kumar, V.; Shah, D.; Das, S.; Bellare, J.; Venkatesh, K. V.; Seth, J. R.; Majumder, A.

10.1101/804492 — biophysics — Posted on 2019-10-14

2333 Paralytic, the Drosophila voltage-gated sodium channel, regulates proliferation of neural progenitors

Piggott, B. J.; Peters, C. J.; He, Y.; Huang, X.; Younger, S.; Jan, L.; Jan, Y. N.

10.1101/803288 — developmental biology — Posted on 2019-10-14

2334 Transcriptome Landscape Reveals Underlying Mechanisms of Ovarian Cell Fate Differentiation and Primordial Follicle Assembly

Wang, J.-J.; Ge, W.; Zhai, Q.-Y.; Liu, J.-C.; Sun, X.-W.; Liu, W.-X.; Li, L.; Lei, C.-Z.; Dyce, P. W.; Felici, M. D.; Shen, W.

10.1101/803767 — developmental biology — Posted on 2019-10-14

2335 Mechanosensitive recruitment of BAF to the nuclear membrane inhibits nuclear E2F1 and Yap levels

Unnikannan, C. P.; Reuveny, A.; Grunberg, D. T.; Volk, T.

10.1101/803932 — cell biology — Posted on 2019-10-14

2336 Dissecting the initiation of female meiosis in the mouse at single-cell resolution

Ge, W.; Zhang, R.-Q.; Wang, J.-J.; Tan, S.-J.; Zhang, F.-L.; Liu, W.-X.; Li, L.; Sun, X.-F.; Cheng, S.-F.; Dyce, P. W.; Felici, M. D.; Shen, W.

10.1101/803668 — developmental biology — Posted on 2019-10-14

2337 An adhesion code ensures robust pattern formation during tissue morphogenesis

Tsai, T. Y.-C.; Sikora, M.; Xia, P.; Colak-Champollion, T.; Knaut, H.; Heisenberg, C.-P.; Megason, S. G.

10.1101/803635 — developmental biology — Posted on 2019-10-14

2338 Embryonic organoids recapitulate early heart organogenesis

Rossie, G.; Boni, A.; Guiet, R.; Girgin, M.; Kelly, R. G.; Lutolf, M. P.

10.1101/802181 — developmental biology — Posted on 2019-10-14

2339 Cell division Rate Controls Cell Shape Remodeling in Epithelia

Devany, J.; Sussman, D. M.; Manning, M. L.; Gardel, M. L.

10.1101/804294 — biophysics — Posted on 2019-10-14

2340 Stem Cell Activity And Regeneration In Roots Require Non-Cell Autonomous Regulation From The Ground Tissue

Sanchez-Corrionero, A.; Perez-Garcia, P.; Cabrera, J.; Silva-Navas, J.; Perianez-Rodriguez, J.; Gude, I.; del Pozo, J. C.; Moreno-Risueno, M. A.

10.1101/803973 — developmental biology — Posted on 2019-10-14

2341 Molecular and Morphological Signatures of Chordate Development: Two Distinct Pathways, One Tunicate

Kowarsky, M.; Anselmi, C.; Hotta, K.; Burighel, P.; Zaniolo, G.; Caicci, F.; Rosental, B.; Neff, N. F.; Ishizuka, K. J.; Palmeri, K. J.; Okamoto, J.; Gordon, T.; Weissman, I. L.; Quake, S. R.; Manni, L.; Voskoboynik, A.

10.1101/801589 — developmental biology — Posted on 2019-10-14

2342 Cryo-EM structure of the potassium-chloride cotransporter KCC4 in lipid nanodiscs

Brohawn, S. G.; Kern, D. M.; Reid, M. S.

10.1101/805267 — biophysics — Posted on 2019-10-14

2343 From bud formation to flowering: transcriptomic state defines the cherry developmental phases of sweet cherry bud dormancy

Vimont, N.; Fouche, M.; Campoy, J. A.; Tong, M.; Arkoun, M.; Yvin, J.-C.; Wigge, P. A.; Dirlewanger, E.; Cortijo, S.; Wenden, B.

10.1101/586651 — plant biology — Posted on 2019-10-14

2344 Information Integration and Collective Motility in Phototactic Cyanobacteria

Menon, S. N.; Varuni, P.; Menon, G. I.

10.1101/590778 — microbiology — Posted on 2019-10-14

2345 New insights into malaria susceptibility from the genomes of 17,000 individuals from Africa, Asia, and Oceania

Band, G.; Le, Q. S.; Clarke, G. M.; Kivinen, K.; Hubbart, C.; Jeffreys, A. E.; Rowlands, K.; Leffler, E. M.; Jallow, M.; Conway, D. J.; Sisay-Joof, F.; Sirugo, G.; d'Alessandro, U.; Toure, O. B.; Thera, M. A.; Konate, S.; Sissoko, S.; Mangano, V. D.; Bougouma, E. C.; Sirima, S. B.; Amenga-Etego, L. N.; Ghansah, A. K.; Hodgson, A. V. O.; Wilson, M. D.; Enimil, A.; Ansong, D.; Evans, J.; Ademola, S. A.; Apinjoh, T. O.; Ndila, C. M.; Manjurano, A.; Drakeley, C.; Reyburn, H.; Nguyen, H. P.; Nguyen, T. N. Q.; Thai, C. Q.; Hien, T. T.; Teo, Y. Y.; Manning, L.; Laman, M.; Michon, P.; Karunajeewa, H.

10.1101/535898 — genetics — Posted on 2019-10-14

2346 Pulmonary acini exhibit complex changes during postnatal rat lung development

Haberthür, D.; Yao, E.; Barre, S. F.; Cremona, T. P.; Tschanz, S. A.; Schittny, J. C.

10.1101/786681 — physiology — Posted on 2019-10-14

2347 Decisions bias future choices by modifying hippocampal associative memories

Luettgau, L.; Tempelmann, C.; Kaiser, L. F.; Jocham, G.

10.1101/802462 — neuroscience — Posted on 2019-10-14

2348 Time-Resolved Correspondences Between Deep Neural Network Layers and EEG Measurements in Object Processing

Kong, N. C. L.; Kaneshiro, B.; Yamins, D. L. K.; Norcia, A. M.

10.1101/754523 — neuroscience — Posted on 2019-10-14

2349 Psychotic-like experiences, polygenic risk scores for schizophrenia and structural properties of the salience, default mode and central-executive networks in healthy participants from UK Biobank

Alloza, C.; Blesa-Cabez, M.; Bastin, M. E.; Madole, J. W.; Buchanan, C. R.; Janssen, J.; Gibson, J.; Deary, I. J.; Tucker-Drob, E. M.; Whalley, H. C.; Arango, C.; McIntosh, A. M.; Cox, S. R.; Lawrie, S. M.

10.1101/729921 — neuroscience — Posted on 2019-10-14

2350 The neural signature of numerosity: Separating numerical and continuous magnitude extraction in visual cortex with frequency-tagged EEG

Van Rinsveld, A.; Guillaume, M.; Kohler, P. J.; Schiltz, C.; Gevers, W.; Content, A.

10.1101/802744 — neuroscience — Posted on 2019-10-14

2351 Accurate cell tracking and lineage construction in live-cell imaging experiments with deep learning

Moen, E.; Borba, E.; Miller, G.; Schwartz, M.; Bannon, D.; Koe, N.; Camplisson, I.; Kyme, D.; Pavelchek, C.; Price, T.; Kudo, T.; Pao, E.; Graf, W.; Van Valen, D. A.

10.1101/803205 — bioinformatics — Posted on 2019-10-14

2352 Identification and evolution of avian endogenous foamy viruses

Chen, Y.; Wei, X.; Zhang, G.; Holmes, E.; Cui, J.

10.1101/707083 — microbiology — Posted on 2019-10-14

Koch, M.; Duigou, T.; Faulon, J.-L.

10.1101/800474 — bioinformatics — Posted on 2019-10-14

2354 Accurate cell tracking and lineage construction in live-cell imaging experiments with deep learning

Moen, E.; Borba, E.; Miller, G.; Schwartz, M.; Bannon, D.; Koe, N.; Camplisson, I.; Kyme, D.; Pavelchek, C.; Price, T.; Kudo, T.; Pao, E.; Graf, W.; Van Valen, D. A.

10.1101/803205 — systems biology — Posted on 2019-10-13

2355 Amphetamine disrupts haemodynamic correlates of prediction errors in nucleus accumbens and orbitofrontal cortex

Werlen, E.; Shin, S.-L.; Gastambide, F.; Tricklebank, M. D.; Marston, H. M.; Huxter, J. R.; Gilmour, G.; Walton, M. E.

10.1101/802488 — neuroscience — Posted on 2019-10-13

2356 Optimal number and placement of EEG electrodes for measurement of neural tracking of speech

Montoya Martinez, J.; Bertrand, A.; Francart, T.

10.1101/800979 — neuroscience — Posted on 2019-10-13

2357 Active zone compaction for presynaptic strength

Mrestani, A.; Kollmannsberger, P.; Pauli, M.; Repp, F.; Kittel, R. J.; Eilers, J.; Doose, S.; Sauer, M.; Siren, A.-L.; Heckmann, M.; Paul, M. M.

10.1101/802843 — neuroscience — Posted on 2019-10-13

2358 Global brain signal in awake rats

Ma, Y.; Ma, Z.; Liang, Z.; Neuberger, T.; Zhang, N.

10.1101/802884 — neuroscience — Posted on 2019-10-13

2359 On the evolution of neural decisions from uncertain visual input to uncertain actions

Tomassini, A.; Price, D.; Zhang, J.; Rowe, J.

10.1101/803049 — neuroscience — Posted on 2019-10-13

2360 Response modality-dependent abstract choice representations for vibrotactile comparisons

Wu, Y.-h.; Velenosi, L. A.; Blankenburg, F.

10.1101/802652 — neuroscience — Posted on 2019-10-13

2361 Measures of repetition suppression in the Fusiform Face Area are inflated by co-occurring effects of statistically learned visual associations

Rostalski, S.-M.; Amado, C.; Kovacs, G.; Feuerriegel, D. C.

10.1101/803163 — neuroscience — Posted on 2019-10-13

2362 Sphingosine 1-phosphate-regulated transcriptomes in heterogenous arterial and lymphatic endothelium of the aorta

Engelbrecht, E.; Levesque, M. V.; He, L.; Vanlandewijck, M.; Nitzsche, A.; Kuo, A.; Singh, S. A.; Aikawa, M.; Holton, K.; Proia, R. L.; Kono, M.; Pu, W. T.; Camerer, E.; Betsholtz, C.; Hla, T.

10.1101/802892 — molecular biology — Posted on 2019-10-13

2363 A dual functioning small RNA/Riboswitch controls the expression of the methionine biosynthesis regulator SahR in Desulfovibrio vulgaris Hildenborough

Kempher, M. L.; Burns, A. S.; Novichkov, P. S.; Bender, K. S.

10.1101/803072 — microbiology — Posted on 2019-10-13

2364 The transcriptional landscape of the murine middle ear epithelium in vitro

Mulay, A.; Chowdhury, M. M. K.; James, C. T.; Bingle, L.; Bingle, C. D.

10.1101/800987 — genomics — Posted on 2019-10-13

2365 A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici

Badet, T.; Oggenfuss, U.; Abraham, L.; McDonald, B. A.; Croll, D.

10.1101/803098 — genomics — Posted on 2019-10-13

2366 The Bovine Genome Variation Database (BGVD): Integrated Web-database for Bovine Sequencing Variations and Selective Signatures

Chen, N.; Fu, W.; Zhao, J.; Shen, J.; Chen, Q.; Zheng, Z.; Chen, H.; Sonstegard, T. S.; Lei, C.; Jiang, Y.

10.1101/802223 — genomics — Posted on 2019-10-13

2367 A fully automated deep learning pipeline for high-throughput colony segmentation and classification

Carl, S. H.; Duempelmann, L.; Shimada, Y.; Buhler, M.

10.1101/801845 — bioinformatics — Posted on 2019-10-13

2368 Novel frameshift variant in MYL2 reveals molecular differences between dominant and recessive forms of hypertrophic cardiomyopathy

Manivannan, S.; Darouich, S.; Masmoudi, A.; Gordon, D.; Zender, G.; Han, Z.; Fitzgerald-Butt, S.; White, P.; McBride, K. L.; Kharrat, M.; Garg, V.

10.1101/790196 — genetics — Posted on 2019-10-13

2369 The Effects of Motor Modularity on Performance, Generalizability and Learning in Upper-Extremity Reaching: a Computational Analysis

Al Borno, M.; Hicks, J. L.; Delp, S.

10.1101/804096 — physiology — Posted on 2019-10-13

2370 Contributions of the conserved insect carbon dioxide receptor subunits to odor detection

Kumar, A.; Tauxe, G. M.; Perry, S.; Scott, C. A.; Dahanukar, A.; Ray, A.

10.1101/803270 — neuroscience — Posted on 2019-10-13

2371 Distinct spatiotemporal mechanisms underlie extra-classical receptive field modulation in macaque V1 microcircuits

Henry, C. A.; Jazayeri, M.; Shapley, R. M.; Hawken, M. J.

10.1101/802710 — neuroscience — Posted on 2019-10-13

2372 Sequential and efficient neural-population coding of complex task information

Koay, S. A.; Thiberge, S. Y.; Brody, C.; Tank, D. W.

10.1101/801654 — neuroscience — Posted on 2019-10-13

2373 Combined use of design of experiments and metabolic engineering for optimization of nogalamycin production

Maki, K.; Coe, M.; Brown, K.; Tran, J.; Sohn, M.; Nybo, E.

10.1101/804179 — microbiology — Posted on 2019-10-13

2374 Phenotypic design choices for enhanced productivity in microbial chemical production processes

Raj, K.; Venayak, N.; Mahadevan, R.

10.1101/803023 — synthetic biology — Posted on 2019-10-13

2375 Potential function of CbuSPL and gene encoding its interacting protein during flowering in Catalpa bungei

Wang, Z.; Zhu, T.; Fan, E.; Lu, N.; Ouyang, F.; Wang, N.; Yang, G.; Kong, L.; Qu, G.; Zhang, S.; Ma, W.; Wang, J.

10.1101/803122 — plant biology — Posted on 2019-10-13

2376 Brain aging comprises multiple modes of structural and functional change with distinct genetic and biophysical associations

Smith, S. M.; Elliott, L. T.; Alfaro-Almagro, F.; McCarthy, P.; Nichols, T. E.; Douaud, G.; Miller, K. L.

10.1101/802686 — neuroscience — Posted on 2019-10-13

2377 Cerebral atherosclerosis contributes to Alzheimer’s dementia independently of its hallmark amyloid and tau pathologies

Wingo, A.; Fan, W.; Doung, D. M.; Gerasimov, E. S.; Dammer, E. B.; White, B.; Thambisetty, M.; Troncoso, J.; Schneider, J. A.; Lah, J. J.; Bennett, D. A.; Seyfried, N.; Levey, A. I.; Wingo, T. S.

10.1101/793349 — neuroscience — Posted on 2019-10-13

2378 Deconstructing the structural conservation of distantly related bacterial nucleoid-associated proteins using functional chimeras

Lourenco, R.; Saurabh, S.; Herrmann, J.; Wakatsuki, S.; Shapiro, L.

10.1101/804138 — molecular biology — Posted on 2019-10-13

2379 Characterisation of an inflammation-related epigenetic score and its association with cognitive ability

Stevenson, A. J.; McCartney, D. L.; Hillary, R. F.; Campbell, A.; Morris, S. W.; Bermingham, M. L.; Walker, R. M.; Evans, K. L.; Boutin, T. S.; Hayward, C.; McRae, A. F.; McColl, B. W.; Spires-Jones, T. L.; McIntosh, A. M.; Deary, I. J.; Marioni, R. E.

10.1101/802009 — genomics — Posted on 2019-10-13

2380 LncRNA de novo discovery reveals noncoding RNAs as major molecular mechanism associating coronary artery disease GWAS variants with causal genes to confer disease risk

Pjanic, M.; Zhao, Q.; Cheng, P.; Nguyen, T.; C. Wirka, R.; Kim, J. B.; L. Miller, C.; Quertermous, T.

10.1101/785980 — genetics — Posted on 2019-10-13

2381 From sectors to speckles: The impact of long range migration on gene surfing

Paulose, J.; Hallatschek, O.

10.1101/803189 — evolutionary biology — Posted on 2019-10-13

2382 Bacteria primed by antimicrobial peptides develop tolerance and persist

Rodriguez Rojas, A.; Baeder, D. Y.; Johnston, P. R.; Regoes, R. R.; Rolff, J.

10.1101/802207 — evolutionary biology — Posted on 2019-10-13

2383 Using a Motion Sensor to Categorize Low Back Pain Patients: A Machine Learning Approach

Abdollahi, M.; Ashouri, S.; Abedi, M.; Azadeh-Fard, N.; Parnianpour, M.; Rashedi, E.

10.1101/803155 — bioengineering — Posted on 2019-10-13

2384 Real-time Continuous Hand Motion Myoelectric Decoding by Automated Data Labeling

Hu, X.; Zeng, H.; Chen, D.; Zhu, J.; Song, A.

10.1101/801985 — bioengineering — Posted on 2019-10-13

2385 Molecularly-Defined Hippocampal Inputs Regulate Population Dynamics in the Prelimbic Cortex to Suppress Context Fear Memory Recall

Hallock, H.; Quillian, H. M.; Maynard, K.; Mai, Y.; Chen, H.-Y.; Hamersky, G.; Shin, J. H.; Maher, B.; Jaffe, A. E.; Martinowich, K.

10.1101/802967 — neuroscience — Posted on 2019-10-13

2386 Unique repression domains of Pumilio utilize deadenylation and decapping factors to accelerate destruction of target mRNAs.

Arvola, R. M.; Chang, C.-T.; Buytendorp, J. P.; Levdansky, Y.; Valkov, E.; Freddolino, P. L.; Goldstrohm, A. C.

10.1101/802835 — molecular biology — Posted on 2019-10-13

2387 Pseudomonas aeruginosa lasR mutant fitness in microoxia is supported by an Anr-regulated oxygen-binding hemerythrin

Clay, M. E.; Hammond, J. H.; Zhong, F.; Chen, X.; Kowalski, C. H.; Lee, A. J.; Porter, M. S.; Greene, C. S.; Pletneva, E. V.; Hogan, D. A.

10.1101/802934 — microbiology — Posted on 2019-10-13

2388 Novel insights into expansion and functional diversification of MIR169 family in tomato

Rao, S.; Balyan, S.; Jha, S.; Mathur, S.

10.1101/801969 — genomics — Posted on 2019-10-13

2389 Germline burden of rare damaging variants negatively affects human healthspan and lifespan

Shindyapina, A. V.; Zenin, A. A.; Tarkhov, A. E.; Fedichev, P. O.; Gladyshev, V. N.

10.1101/802082 — genetics — Posted on 2019-10-13

2390 High-amplitude co-fluctuations in cortical activity drive resting-state functional connectivity

Betzel, R.; Faskowitz, J.; Sporns, O.

10.1101/800045 — neuroscience — Posted on 2019-10-13

2391 Dopamine D2 receptors modulate intrinsic properties and synaptic transmission of parvalbumin interneurons in the mouse primary motor cortex

Cousineau, J.; Lescouzeres, L.; Taupignon, A.; Delgado-Zabalza, L.; Valjent, E.; Baufreton, J.; Le Bon-Jego, M.

10.1101/802140 — neuroscience — Posted on 2019-10-13

2392 An integrated multi-omic single cell atlas to redefine human B cell memory

Glass, D. R.; Tsai, A. G.; Oliveria, J. P.; Hartmann, F. J.; Kimmey, S. C.; Calderon, A. A.; Borges, L.; Bendall, S. C.

10.1101/801530 — immunology — Posted on 2019-10-13

2393 L1 and B1 repeats blueprint the spatial organization of chromatin

Lu, J. Y.; Chang, L.; Li, T.; Sun, Y.; Shen, X.

10.1101/802173 — genomics — Posted on 2019-10-13

2394 The RGG Domain of the Yeast Nucleolin Nsr1 Is Required for the Genome Instability Associated with Co-transcriptionally Formed G4 DNA

Singh, S.; Berroyer, A.; Kim, N.

10.1101/802876 — genetics — Posted on 2019-10-13

2395 Ambiguity coding allows accurate inference of evolutionary parameters from alignments in an aggregated state-space

Weber, C. C.; Perron, U.; Casey, D.; Yang, Z.; Goldman, N.

10.1101/802603 — evolutionary biology — Posted on 2019-10-13

2396 Root trait responses to drought depend on plant functional group

Lozano, Y. M.; Aguilar-Trigueros, C. A.; Flaig, I. C.; Rillig, M. C.

10.1101/801951 — ecology — Posted on 2019-10-13

2397 Indirect versus Direct Effects of Freshwater Browning on Larval Fish Foraging

Leech, D.; Clift, T. L.; Littlefield, J. L.; Ravagli, N. R.; Spain, J. E.

10.1101/804070 — ecology — Posted on 2019-10-13

2398 A Mechanical Model of Early Somite Segmentation

Adhyapok, P.; Piatkowska, A. M.; Clendenon, S. G.; Stern, C. D.; Glazier, J. A.; Belmonte, J. M.

10.1101/804203 — developmental biology — Posted on 2019-10-13

2399 HT Atlas v1.0 database: redefining human and mouse housekeeping genes and candidate reference transcripts by mining massive RNA-seq datasets

Hounkpe, B. W.; Chenou, F.; Lima, F.; de Paula, E. V.

10.1101/787150 — bioinformatics — Posted on 2019-10-13

2400 Searching for relief: Drosophila melanogaster navigation in a virtual bitter maze

Meda, N.; Frighetto, G.; Megighian, A.; Zordan, M. A.

10.1101/804054 — animal behavior and cognition — Posted on 2019-10-13

2401 Territory establishment, song learning strategies and survival in song sparrows

Akcay, C.; Campbell, S. E.; Darling, S. J.; Beecher, M. D.

10.1101/804021 — animal behavior and cognition — Posted on 2019-10-13

2402 Regulatory dynamic enzyme-cost flux balance analysis: A unifying framework for constraint-based modeling

Liu, L.; Bockmayr, A.

10.1101/802249 — systems biology — Posted on 2019-10-13

2403 Evolutionary regain of lost gene circuit function

Kheir Gouda, M.; Manhart, M.; Balazsi, G.

10.1101/804187 — systems biology — Posted on 2019-10-13

2404 RNAseq studies reveal distinct transcriptional response to vitamin A deficiency in small intestine versus colon, discovering novel VA-regulated genes

Chai, Z.; Lyu, Y.; Chen, Q.; Wei, C.-H.; Snyder, L.; Weaver, V.; Li, Q.; Cantorna, M.; Ross, C.

10.1101/798504 — physiology — Posted on 2019-10-13

2405 MetAP2 inhibition reduces food intake and body weight in a ciliopathy mouse model of obesity

Pottorf, T. S.; Fagan, M.; Burkey, B.; Cho, D. J.; Vath, J. E.; Tran, P. V.

10.1101/800151 — pharmacology and toxicology — Posted on 2019-10-13

2406 Neuro-Computational Foundations of Moral Preferences

Ugazio, G.; Grueschow, M.; Polania, R.; Lamm, C.; Tobler, P.; Ruff, C.

10.1101/801936 — neuroscience — Posted on 2019-10-13

2407 Orbitofrontal-striatal potentiation underlies stimulant induced hyperactivity

Bariselli, S.; Miyazaki, N.; Kravitz, A.

10.1101/802900 — neuroscience — Posted on 2019-10-13

2408 The neural signature of numerosity: Separating numerical and continuous magnitude extraction in early visual cortex with frequency-tagged EEG

Van Rinsveld, A.; Guillaume, M.; Kohler, P. J.; Schiltz, C.; Gevers, W.; Content, A.

10.1101/802744 — neuroscience — Posted on 2019-10-13

2409 Short interval intracortical inhibition as measured by TMS-EEG

Rawji, V.; Kaczmarczyk, I.; Rocchi, L.; Rothwell, J. C.; Sharma, N.

10.1101/802504 — neuroscience — Posted on 2019-10-13

2410 Coincidence of cholinergic pauses, dopaminergic activation and depolarization drives synaptic plasticity in the striatum

Zhang, Y.-F.; Fisher, S. D.; Oswald, M.; Wickens, J. R.; Reynolds, J. N. J.

10.1101/803536 — neuroscience — Posted on 2019-10-13

2411 A CellAge epigenetic clock for expedited discovery of anti-ageing compounds in vitro

Lujan, C.; Tyler, E. J.; Webster, A. P.; Stead, E. R.; Martinez Miguel, V. E.; Ecker, S.; Milligan, D.; Garbe, J. C.; Stampfer, M. R.; Beck, S.; Lowe, R.; Bishop, C.; Bjedov, I.

10.1101/803676 — molecular biology — Posted on 2019-10-13

2412 Alkyladenine DNA glycosylase associates with transcription elongation to coordinate DNA repair with gene expression

Montaldo, N. P.; Bordin, D. L.; Brambilla, A.; Rösinger, M.; Fordyce Martin, S. L.; Oian Bjoras, K.; Bradamante, S.; Aas, P. A.; Furrer, A.; Olsen, L. C.; Otterlei, M.; Saetrom, P.; Bjoras, M.; Samson, L. D.; van Loon, B.

10.1101/802983 — molecular biology — Posted on 2019-10-13

2413 Extreme storm-induced run-off causes rapid, context-dependent shifts in nearshore subtropical bacterial communities

Ares, A.; Mars Brisbin, M.; Sato, K. N.; Martin, J. P.; Iinuma, Y.; Mitarai, S.

10.1101/801886 — microbiology — Posted on 2019-10-13

2414 Characterization of vertically and cross-species transmitted viruses in the cestode parasite Schistocephalus solidus

Hahn, M. A.; Rosario, K.; Lucas, P.; Dheilly, N. M.

10.1101/803247 — microbiology — Posted on 2019-10-13

2415 CCmed: cross-condition mediation analysis for identifying robust trans-eQTLs and assessing their effects on human traits

Yang, F.; Gleason, K. J.; Wang, J.; The GTEx Consortium, ; Duan, J.; He, X.; Pierce, B. L.; Chen, L. S.

10.1101/803106 — genetics — Posted on 2019-10-13

2416 Identification of a core module for bone mineral density through the integration of a co-expression network and GWAS data

Sabik, O. L.; Calabrese, G. M.; Taleghani, E.; Ackert-Bicknell, C. L.; Farber, C. R.

10.1101/803197 — genetics — Posted on 2019-10-13

2417 Under-ice mesocosm experiments reveal the primacy of light but the importance of zooplankton in winter phytoplankton dynamics

Hrycik, A. R.; Stockwell, J. D.

10.1101/802819 — ecology — Posted on 2019-10-13

2418 Highly efficient direct conversion of human monocytes into neuronal cells using a small molecule combination

Ninomiya, I.; Kanazawa, M.; Koyama, A.; Hatakeyama, M.; Onodera, O.

10.1101/803254 — cell biology — Posted on 2019-10-13

2419 Imputing missing RNA-seq data from DNA methylation by using transfer learning based-deep neural network

Zhou, X.; Chai, H.; Zhao, H.; Luo, C.-H.; Yang, Y.

10.1101/803692 — bioinformatics — Posted on 2019-10-13

2420 Affinity-based polymers provide long-term immunotherapeutic drug delivery across particle size ranges optimal for macrophage targeting

Rohner, N. A.; Purdue, L.; von Recum, H. A.

10.1101/802801 — bioengineering — Posted on 2019-10-13

2421 Intercellular adhesion stiffness moderates cell decoupling on stiff substrates

Vargas, D. A.; Heck, T.; Smeets, B.; Ramon, H.; Parameswaran, H.; Van Oosterwyck, H.

10.1101/802520 — bioengineering — Posted on 2019-10-13

2422 Riboflavin Directly Mediates the Dealkylation by Microbial Cytochrome P450 Monooxygeneses

Zhang, C.; Lu, M.; Lin, L.; Huang, Z.; Zhang, R.; Wu, X.; Chen, Y.

10.1101/801928 — biochemistry — Posted on 2019-10-13

2423 A conveyor feeder for animal experiments

Oh, J.

10.1101/801993 — animal behavior and cognition — Posted on 2019-10-13

2424 Genome-informed integrative taxonomic description of three cryptic species in the earthworm genus Carpetania (Oligochaeta, Hormogastridae)

Marchan, D. F.; Fernandez, R.; Dominguez, J.; Diaz Cosin, D. J.; Novo, M.

10.1101/802017 — zoology — Posted on 2019-10-13

2425 Identification and comparison of genes differentially regulated by transcription factors and miRNAs

Abrams, Z. B.; Asiaee, A.; Nakayiza, S.; Sampath, D.; Coombes, K. R.

10.1101/803643 — systems biology — Posted on 2019-10-13

2426 DDIA: data dependent-independent acquisition proteomics - DDA and DIA in a single LC-MS/MS run

Guan, S.; Taylor, P. P.; Han, Z.; Moran, M. F.; Ma, B.

10.1101/802231 — systems biology — Posted on 2019-10-13

2427 A Consensus Proteomic Analysis of Alzheimer’s Disease Brain and Cerebrospinal Fluid Reveals Early Changes in Energy Metabolism Associated with Microglia and Astrocyte Activation

Johnson, E.; Dammer, E. B.; Duong, D. M.; Ping, L.; Zhou, M.; Yin, L.; Higginbotham, L. A.; Guajardo, A.; White, B.; Troncoso, J. C.; Thambisetty, M.; Montine, T. J.; Lee, E. B.; Trojanowski, J. Q.; Beach, T. G.; Reiman, E. M.; Haroutunian, V.; Wang, M.; Schadt, E.; Zhang, B.; Dickson, D. W.; Ertekin-Taner, N.; Golde, T. E.; Petyuk, V. A.; De Jager, P. L.; Bennett, D. A.; Wingo, T. S.; Rangaraju, S.; Hajjar, I.; Shulman, J. M.; Lah, J. J.; Levey, A. I.; Seyfried, N. T.

10.1101/802959 — systems biology — Posted on 2019-10-13

2428 Robust Estimation of Bacterial Cell Count from Optical Density

Beal, J.; Farny, N. G.; Haddock-Angelli, T.; Selvarajah, V.; Baldwin, G. S.; Buckley-Taylor, R.; Gershater, M.; Kiga, D.; Marken, J. P.; Sanchania, V.; Sison, A.; Workman, C.; iGEM Interlab Study Contributors,

10.1101/803239 — synthetic biology — Posted on 2019-10-13

2429 Impact of higher-order network structure on emergent cortical activity

Nolte, M.; Gal, E.; Markram, H.; Reimann, M. W.

10.1101/802074 — neuroscience — Posted on 2019-10-13

2430 Preexisting hippocampal network dynamics constrain optogenetically induced place fields

McKenzie, S.; Huszar, R.; English, D. F.; Kim, K.; Yoon, E.; Buzsaki, G.

10.1101/803577 — neuroscience — Posted on 2019-10-13

2431 Chronic Bilateral Stimulation through Cochlear Implants during Development Can Reverse the Effect of Early-Onset Deafness on Neural Binaural Sensitivity

Sunwoo, W.; Delgutte, B.; Chung, Y.

10.1101/803627 — neuroscience — Posted on 2019-10-13

2432 Zebrafish dorsal habenula is required for updating learned behaviors

Palumbo, F.; Serneels, B.; Pelgrims, R.; Yaksi, E.

10.1101/802256 — neuroscience — Posted on 2019-10-13

2433 Decisions bias future choices by modifying hippocampal associative memories

Luettgau, L.; Tempelmann, C.; Kaiser, L. F.; Jocham, G.

10.1101/802462 — neuroscience — Posted on 2019-10-13

2434 Optimal Experimental Design for Big Data: Applications in Brain Imaging

Bridgeford, E. W.; Wang, S.; Yang, Z.; Wang, Z.; Xu, T.; Craddock, C.; Kiar, G.; Gray-Roncal, W.; Priebe, C. E.; Caffo, B.; Milham, M.; Zuo, X.-N.; Consortium for Reliability and Reproducibility, ; Vogelstein, J. T.

10.1101/802629 — neuroscience — Posted on 2019-10-13

2435 Exome Sequencing Reveals a High Prevalence of BRCA1 and BRCA2 Founder Variants in a Diverse Population-Based Biobank

Abul-Husn, N. S.; Soper, E. R.; Odgis, J. A.; Cullina, S.; Bobo, D.; Moscati, A.; Rodriguez, J. E.; Loos, R. J.; Cho, J. H.; Belbin, G. M.; Suckiel, S. A.; Kenny, E. E.

10.1101/802348 — genomics — Posted on 2019-10-13

2436 Genetic interaction of mammalian IFT-A paralogs regulates cilia disassembly, ciliary protein trafficking, Hedgehog signaling and embryogenesis

Wang, W.; Allard, B. A.; Pottorf, T. S.; Vivian, J. L.; Tran, P. V.

10.1101/803544 — genetics — Posted on 2019-10-13

2437 Diversification of metazoan Kexin-like proprotein convertases: insights from the leech Helobdella

Tao, W.-Y.; Cheng, Y.-C.; Song, M. H.; Weisblat, D. A.; Kuo, D.-H.

10.1101/802215 — evolutionary biology — Posted on 2019-10-13

2438 Evolution in alternating environments with tunable inter-landscape correlations

Maltas, J.; McNally, D. M.; Wood, K. B.

10.1101/803619 — evolutionary biology — Posted on 2019-10-13

2439 SALTClass: classifying clinical short notes using background knowledge from unlabeled data

Bagheri, A.; Oberski, D. L.; Sammani, A.; van der Heijden, P. G. M.; Asselbergs, F. W.

10.1101/801944 — bioinformatics — Posted on 2019-10-13

2440 Segmentation-free inference of cell-types from in situ transcriptomics data

Park, J.; Choi, W.; Tiesmeyer, S.; Long, B.; Borm, L. E.; Garren, E.; Nguyen, T. N.; Codeluppi, S.; Schlesner, M.; Tasic, B.; Eils, R.; Ishaque, N.

10.1101/800748 — bioinformatics — Posted on 2019-10-13

2441 How flexible is tool use in Eurasian jays (Garrulus glandarius)?

Amodio, P.; Boeckle, M.; Jelbert, S. A.; Ostojic, L.; Clayton, N. S.

10.1101/803700 — animal behavior and cognition — Posted on 2019-10-13

2442 Channel Capacity Computations for Unregulated and Autoregulated Gene Expression

Vahdat, Z.; Farooq, Z.; Nienaltowski, K.; Komorowski, M.; Singh, A.

10.1101/802108 — systems biology — Posted on 2019-10-13

2443 Oscillation-driven memory encoding, maintenance and recall in an entorhinal-hippocampal circuit model

Kurikawa, T.; Mizuseki, K.; Fukai, T.

10.1101/804062 — neuroscience — Posted on 2019-10-13

2444 High-fidelity Musculoskeletal Modeling Reveals a Motor Planning Contribution to the Speed-Accuracy Tradeoff

Al Borno, M.; Vyas, S.; Shenoy, K. V.; Delp, S.

10.1101/804088 — neuroscience — Posted on 2019-10-13

2445 Edge-centric functional network representations of human cerebral cortex reveal overlapping system-level architecture

Faskowitz, J.; Zamani Esfahlani, F.; Jo, Y.; Sporns, O.; Betzel, R.

10.1101/799924 — neuroscience — Posted on 2019-10-13

2446 Epidemiology of bacterial contamination of inert hospital surfaces and equipment in critical and non-critical care units: a Brazilian multicenter study

Rodrigues, D. O.; Peixoto, L. P.; Barros, E. T. M.; Guimaraes, J. R.; Gontijo, B. C.; Almeida, J. L.; Azevedo, L. G.; Lima, J. C. O.; Camara, D. S.

10.1101/793034 — microbiology — Posted on 2019-10-13

2447 Trait-specific trade-offs prevent niche expansion in two parasites

Lievens, E. J.; Michalakis, Y.; Lenormand, T.

10.1101/621581 — evolutionary biology — Posted on 2019-10-13

2448 A mechanistic path to maximize biomass productivity while maintaining diversity.

Godoy, O.; Gomez-Aparicio, L.; Matias, L.; Perez-Ramos, I. M.; Allan, E.

10.1101/800706 — ecology — Posted on 2019-10-13

2449 Tree demographic performance of European tree species at their hot and cold edges.

Kunstler, G.; Guyennon, A.; Ratcliffe, S.; Ruger, N.; Ruiz-Benito, P.; Childs, D. Z.; Dahlgren, J.; Lehtonen, A.; Thuiller, W.; Wirth, C.; Zavala, M. A.; Salguero-Gomez, R.

10.1101/801084 — ecology — Posted on 2019-10-13

2450 Significant improvement of reprogramming efficiency by transient overexpression of ZGA inducer Dux but not Dppa2/4

Yang, L.; Liu, X.; Song, L.; Di, A.; Su, G.; Bai, C.; Wei, Z.; Li, G.

10.1101/803593 — bioengineering — Posted on 2019-10-13

2451 The interaction of aging and oxidative stress contributes to pathogenesis in mouse and human Huntington disease neurons

Machiela, E.; Jeloka, R.; Caron, N. S.; Mehta, S.; Schmidt, M. E.; Tom, C. M.; Potluri, N.; Xie, Y.; Mattis, V. B.; Hayden, M. R.; Southwell, A. L.

10.1101/800268 — neuroscience — Posted on 2019-10-13

2452 Metabolic Profiling of Aortic Stenosis and Hypertrophic Cardiomyopathy Identifies Mechanistic Contrasts in Substrate Utilisation

Pal, N.; Acharjee, A.; Ament, Z.; Dent, T.; Yavari, A.; Mahmod, M.; Ariga, R.; West, J.; Steeples, V.; Cassar, M.; Howell, N. J.; Lockstone, H.; Elliott, K.; Yavari, P.; Briggs, W.; Frenneaux, M.; Prendergast, B.; Dwight, J. S.; Kharbanda, R.; Watkins, H.; Ashrafian, H.; Griffin, J.

10.1101/715680 — systems biology — Posted on 2019-10-13

2453 C. elegans heritably adapts to P. vranovensis infection via a mechanism that requires the cysteine synthases cysl-1 and cysl-2

Burton, N. O.; Riccio, C.; Dallaire, A.; Price, J.; Jenkins, B.; Koulman, A.; Miska, E. A.

10.1101/675132 — genetics — Posted on 2019-10-13

2454 Loss of Competence in early development is mediated by loss of chromatin accessibility

Esmaeili, M.; Blythe, S. A.; Tobias, J. W.; Zhang, K.; Yang, J.; Klein, P. S.

10.1101/797183 — developmental biology — Posted on 2019-10-13

2455 Aquatic biodiversity enhances multiple nutritional benefits to humans

Bernhardt, J. R.; O'Connor, M. I.

10.1101/691444 — ecology — Posted on 2019-10-13

2456 Computational and cellular studies reveal structural destabilization and degradation of MLH1 variants in Lynch syndrome

Abildgaard, A. B.; Stein, A.; Nielsen, S. V.; Schultz-Knudsen, K.; Papaleo, E.; Shrikhande, A.; Hoffmann, E. R.; Bernstein, I.; Gerdes, A.-M.; Takahashi, M.; Ishioka, C.; Lindorff-Larsen, K.; Hartmann-Petersen, R.

10.1101/622266 — biochemistry — Posted on 2019-10-13

2457 Chromatin structure-dependent histone incorporation revealed by a genome-wide deposition assay

Tachiwana, H.; Dacher, M.; Maehara, K.; Harada, A.; Ohkawa, Y.; Kimura, H.; Kurumizaka, H.; Saitoh, N.

10.1101/641381 — biochemistry — Posted on 2019-10-13

2458 Imaging Sterols and Oxysterols in Mouse Brain Reveals Distinct Spatial Cholesterol Metabolism

Yutuc, E.; Angelini, R.; Baumert, M.; Mast, N.; Pikuleva, I.; Newton, J.; Clench, M. R.; Skibinski, D.; Howell, O.; Wang, Y.; Griffiths, W. J.

10.1101/450973 — neuroscience — Posted on 2019-10-13

2459 Heterochronically expressed midline netrin was recruited to guide mesoderm migration in epibolic gastrulation of the leech

Lee, J.-R.; Kuo, D.-H.

10.1101/803353 — developmental biology — Posted on 2019-10-13

2460 Exogenous supply of Hsp47 triggers fibrillar collagen deposition in skin cell cultures in vitro

Khan, E. S.; Sankaran, S.; LLontop, L. A.; del Campo Becares, A.

10.1101/803791 — cell biology — Posted on 2019-10-13

2461 The effects of polydisperse crowders on the compaction of the Escherichia coli nucleoid

Yang, D.; Männik, J.; Retterer, S. T.; Männik, J.

10.1101/803130 — biophysics — Posted on 2019-10-13

2462 Inserting small molecules across membrane mixtures: Insight from the potential of mean force

Centi, A.; Dutta, A.; Parekh, S. H.; Bereau, T.

10.1101/802769 — biophysics — Posted on 2019-10-13

2463 Gender-specific pathophysiological mGluR5-dependent Aβ oligomer signaling in Alzheimer mice

Abd-Elrahman, K. S.; Hamilton, A.; de Souza, J. M.; Albaker, A.; Ribeiro, F. M.; Ferguson, S. S. G.

10.1101/803262 — neuroscience — Posted on 2019-10-13

2464 High resolution, dynamic imaging of early mouse and human liver bud morphogenesis in three dimensions

Mon, T.; Ogoke, O.; Shamul, C.; Ross, S.; Rao, S.; Parashurama, N.

10.1101/803478 — developmental biology — Posted on 2019-10-13

2465 speck, first identified in Drosophila melanogaster in 1910, is encoded by the Arylalkalamine N-acetyltransferase (AANAT1) gene

Spana, E. P.; Abrams, A. B.; Ellis, K. T.; Klein, J. C.; Ruderman, B. T.; Shi, A. H.; Zhu, D.; Stewart, A.; May, S.

10.1101/800391 — developmental biology — Posted on 2019-10-13

2466 Chemogenetic Inhibition of Infralimbic Prefrontal Cortex GABA-ergic Parvalbuminpositive Interneurons Attenuates Chronic Stress Adaptions in Male Mice

Nawreen, N.; Morano, R.; Mahbod, P.; Cotella, E.; Dalal, K.; Fitzgerald, M.; Martelle, S.; Packard, B.; Moloney, R. D.; Herman, J.

10.1101/792721 — neuroscience — Posted on 2019-10-13

2467 Stress induces cytoprotective TDP-43 nuclear bodies through lncRNA NEAT1-promoted phase separation

Wang, C.; Duan, Y.; Duan, G.; Ma, Z.; Zhang, K.; Deng, X.; Qian, B.; Gu, J.; Wang, Q.; Zhang, S.; Guo, L.; Liu, C.; Fang, Y.

10.1101/802058 — neuroscience — Posted on 2019-10-12

2468 The effect of NMDA-R antagonist, MK-801, on Neuronal Mismatch along the Auditory Thalamocortical System

Parras, G. G.; Valdes-Baizabal, C.; Harms, L.; Michie, P.; Malmierca, M. S.

10.1101/636068 — neuroscience — Posted on 2019-10-13

2469 Early exposure to broadly neutralizing antibodies triggers a switch from progressive disease to lasting control of SHIV infection

Desikan, R.; Raja, R.; Dixit, N. M.

10.1101/548727 — immunology — Posted on 2019-10-13

2470 A sex difference in the composition of the rodent postsynaptic density

Mastro, T. L.; Preza, A.; Basu, S.; Chattarji, S.; Till, S. M.; Kind, P. C.; Kennedy, M. B.

10.1101/802538 — neuroscience — Posted on 2019-10-12

2471 MICU1 regulates mitochondrial cristae structure and function independent of the mitochondrial calcium uniporter channel

Tomar, D.; Thomas, M.; Garbincius, J. F.; Kolmetzky, D. W.; Salik, O.; Jadiya, P.; Carpenter, A. C.; Elrod, J. W.

10.1101/803213 — cell biology — Posted on 2019-10-12

2472 Neural correlates of cue-induced changes in decision-making distinguish subjects with gambling disorder from healthy controls

Genauck, A.; Matthis, C.; Andrejevic, M.; Ballon, L.; Chiarello, F.; Duecker, K.; Heinz, A.; Kathmann, N.; Romanczuk-Seiferth, N.

10.1101/498725 — neuroscience — Posted on 2019-10-12

2473 Steryl ester formation and accumulation in steroid-degrading bacteria

Holert, J.; Brown, K.; Hashimi, A.; Eltis, L. D.; Mohn, W. W.

10.1101/775916 — microbiology — Posted on 2019-10-12

2474 Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage

Lau, A. K.; Dörrer, S.; Leimeister, C.-A.; Bleidorn, C.; Morgenstern, B.

10.1101/550632 — bioinformatics — Posted on 2019-10-12

2475 Exons, Introns, and UCEs Reveal Conflicting Phylogenomic Signals in a Rapid Radiation of Frogs (Ranidae: Hylarana)

Chan, K. O.; Hutter, C.; Wood, P. L.; Grismer, L.; Brown, R.

10.1101/765610 — evolutionary biology — Posted on 2019-10-12

2476 The effect of APOBEC3B deaminase on double-stranded DNA

Chapman, J.; Custance, M.; Shen, B.; Furano, A. V.

10.1101/750877 — biochemistry — Posted on 2019-10-12

2477 Liver fluke granulin promotes exosome-mediated crosstalk and cellular microenvironment conducive to cholangiocarcinoma

Arunsan, P.; Chaidee, A.; Cochan, C. J.; Mann, V. H.; Tanno, T.; kumkhaek, c.; Smout, M.; Karinshak, S.; Rodpai, R.; Sotillo, J.; Loukas, A.; LAHA, T.; Brindley, P. J.; Ittiprasert, W.

10.1101/700427 — molecular biology — Posted on 2019-10-12

2478 Assessing a causal relationship between circulating lipids and breast cancer risk: Mendelian randomization study

Johnson, K. E.; Siewert, K. M.; Klarin, D.; Damrauer, S. M.; The VA Million Veteran Program, ; Chang, K.-M.; Tsao, P. S.; Assimes, T. L.; Maxwell, K. N.; Voight, B. F.

10.1101/794594 — genomics — Posted on 2019-10-12

2479 Genetic diversity and structure of sweet chestnut (Castanea sativa Mill.) in France: At the intersection between Spain and Italy

Bouffartigue, C.; Debille, S.; Fabreguettes, O.; Ramos Cabrer, A.; Pereira-Lorenzo, S.; Flutre, T.; Harvengt, L.

10.1101/792259 — genetics — Posted on 2019-10-12

2480 Genomic prediction informed by biological processes expands our understanding of the genetic architecture underlying free amino acid traits in dry Arabidopsis seeds

Turner-Hissong, S. D.; Bird, K. A.; Lipka, A. E.; King, E. G.; Beissinger, T. M.; Angelovici, R.

10.1101/272047 — genetics — Posted on 2019-10-12

2481 A versatile twin-microscope system for light-sheet imaging

Keomanee-Dizon, K.; Fraser, S. E.; Truong, T. V.

10.1101/801688 — biophysics — Posted on 2019-10-12

2482 Guiding T lymphopoiesis from pluripotent stem cells by defined transcription factors

Guo, R.; Hu, F.; Weng, Q.; Lv, C.; Wu, H.; Liu, L.; Li, Z.; Zeng, Y.; Bai, Z.; Zhang, M.; Liu, Y.; Liu, X.; Xia, C.; Wang, T.; Zhou, P.; Wang, K.; Dong, Y.; Luo, Y.; Zhang, X.; Guan, Y.; Geng, Y.; Du, J.; Li, Y.; Lan, Y.; Chen, J.; Liu, B.; Wang, J.

10.1101/660977 — immunology — Posted on 2019-10-12

2483 An unbiased high-throughput drug screen reveals a potential therapeutic vulnerability in the most lethal molecular subtype of pancreatic cancer

Pan, C.-H.; Otsuka, Y.; Sridharan, B.; Woo, M.; Babu, S.; Leiton, C. V.; Bai, J. D.; Chang, D. K.; Biankin, A.; Scampavia, L.; Spicer, T.; Escobar-Hoyos, L. F.; Shroyer, K. R.

10.1101/791913 — cancer biology — Posted on 2019-10-11

2484 The protein translation machinery is expressed for maximal efficiency in Escherichia coli

Hu, X.-P.; Dourado, H.; Lercher, M. J.

10.1101/802470 — biophysics — Posted on 2019-10-11

2485 Computational and experimental evidence to the permeability of withanolides across the normal cell membrane

Wadhwa, R.; Yadav, N. S.; Katiyar, S. P.; Yaguchi, T.; Lee, C.; Ahn, H.; Yun, C.-O.; Kaul, S. C.; Sundar, D.

10.1101/802645 — biophysics — Posted on 2019-10-11

2486 SOFIevaluator: a strategy for the quantitative quality assessment of SOFI data

Moeyaert, B.; Vandenberg, W.; Dedecker, P.

10.1101/802199 — biophysics — Posted on 2019-10-11

2487 Mechanochemical Model of Transcriptional Bursting

Klindziuk, A.; Meadowcroft, B.; Kolomeisky, A. B.

10.1101/802751 — biophysics — Posted on 2019-10-11

2488 Stretching DNA to twice the normal length with single-molecule hydrodynamic trapping

Jiang, Y.; Feldman, T.; Bakx, J. A. M.; Yang, D.; Wong, W. P.

10.1101/801464 — biophysics — Posted on 2019-10-11

2489 Imidazole-imidazole hydrogen bonding in the pH sensing Histidine sidechains of Influenza A M2

Tekwani Movellan, K.; Wegstroth, M.; Overkamp, K.; Leonov, A.; Becker, S.; Andreas, L. B.

10.1101/802942 — biophysics — Posted on 2019-10-11

2490 Ultra-high field imaging reveals increased whole brain connectivity underpins cognitive strategies that attenuate pain

Schulz, E.; Stankewitz, A.; Winkler, A. M.; Irving, S.; Witkovsky, V.; Tracey, I.

10.1101/802306 — neuroscience — Posted on 2019-10-11

2491 Rutin, a Natural Inhibitor of IGPD Protein, Inhibits the Biofilm Formation in Staphylococcus xylosus ATCC700404

BELLO-ONAGHISE, G.; Xiaoxu, X.; Yonghui, Z.; Qianwei, Q.; Wenqiang, C.; Yang, T.; Xingru, C.; Jinpeng, W.; Li, Y.

10.1101/802447 — pharmacology and toxicology — Posted on 2019-10-11

2492 The Effects of Leukocyte- and Platelet-Rich Plasma (L-Prp) and Pure Platelet-Rich Plasma (P-Prp) an a Rat Endometriosis Model

Angın, A. D.; gün, i.; sakin, o.; cıkman, m. s.; Pirimoglu, Z. M.; kale, a.; basak, k.; Kaygın, P.; oguztüzün, s.

10.1101/802421 — pathology — Posted on 2019-10-11

2493 Mechanisms of Synchrony in Heterogeneous Inhibitory Interneuronal Networks for Type 1 versus Type 2 Excitability

Tikidji-Hamburyan, R. A.; Canavier, C. C.

10.1101/802330 — neuroscience — Posted on 2019-10-11

2494 Optogenetic mapping of feeding and self-stimulation within the lateral hypothalamus of the rat

Urstadt, K.; Berridge, K. C.

10.1101/802405 — neuroscience — Posted on 2019-10-11

2495 Truncated WT1 protein isoform expression is increased in MCF-7 cells in a long-term estrogen depletion.

Saavedra, S.; Zapata-Benavides, P.; Mendoza-Gamboa, E.; Chavez-Escamilla, A. K.; Arellano-Rodriguez, M.; Rodriguez-Padilla, C.; Saavedra-Alonso Santiago, Zapata-Benavides Pablo and Rodriguez-Padilla Cristina,

10.1101/802439 — cell biology — Posted on 2019-10-11

2496 Larviposition site selection mediated by volatile semiochemicals of larval origin in Glossina palpalis gambiensis

Gimonneau, G.; Ouedraogo, R.; Salou, E.; Rayaisse, J.-B.; Buatois, B.; Solano, P.; Dormont, L.; Roux, O.; Bouyer, J.

10.1101/802397 — animal behavior and cognition — Posted on 2019-10-11

2497 DNA Double Strand Break Repair in E. coli Perturbs Cell Division and Chromosome Dynamics

White, M. A.; Darmon, E.; Lopez-Vernaza, M. A.; Leach, D. R. F.

10.1101/802389 — genetics — Posted on 2019-10-11

2498 The C. elegans homolog of the Evi1 proto-oncogene, egl-43, coordinates G1 cell cycle arrest with pro-invasive gene expression during anchor cell invasion

Deng, T.; Daube, M.; Hajnal, A.; Lattmann, E.

10.1101/802355 — developmental biology — Posted on 2019-10-11

2499 Insulator proteins contribute to expression of gene loci repositioned into heterochromatin in the course of Drosophila evolution

Funikov, S. Y.; Rezvykh, A. P.; Kulikova, D. A.; Zelentsova, E. S.; Chuvakova, L. N.; Tyukmaeva, V. I.; Arkhipova, I. R.; Evgen'ev, M. B.

10.1101/802371 — evolutionary biology — Posted on 2019-10-11

2500 Duplication and divergence of the retrovirus restriction gene Fv1 in Mus caroli mice allows protection from multiple retroviruses

Yap, M. W.; Young, G. R.; Varnaite, R.; Morand, S.; Stoye, J. P.

10.1101/802363 — evolutionary biology — Posted on 2019-10-11

2501 Single-cell RNA sequencing of adult Drosophila ovaryidentifies transcriptional programs governing oogenesis

Jevitt, A.; Chatterjee, D.; Xie, G.; Wang, X.-F.; Huang, Y.-C.; Otwell, T.; Deng, W.-M.

10.1101/802314 — developmental biology — Posted on 2019-10-11

2502 Tissue evolution: Mechanical interplay of adhesion, pressure, and heterogeneity

Büscher, T.; Ganai, N.; Gompper, G.; Elgeti, J.

10.1101/802322 — biophysics — Posted on 2019-10-11

2503 Treerecs: an integrated phylogenetic tool, from sequences to reconciliations

Comte, N.; Morel, B.; Hasic, D.; Gueguen, L.; Boussau, B.; Daubin, V.; Penel, S.; Scornavacca, C.; Gouy, M.; Stamatakis, A.; Tannier, E.; Parsons, D.

10.1101/782946 — bioinformatics — Posted on 2019-10-11

2504 miqoGraph : Fitting admixture graphs using mixed-integer quadratic optimization

Yan, J.; Patterson, N.; Narasimhan, V. M.

10.1101/801548 — genomics — Posted on 2019-10-11

2505 Microtubule tyrosination/detyrosination specifies a mitotic error code

Ferreira, L. T.; Orr, B.; Rajendraprasad, G.; Pereira, A. J.; Lemos, C.; Lima, J. T.; Guasch Boldu, C.; Ferreira, J. G.; Barisic, M.; Maiato, H.

10.1101/801977 — cell biology — Posted on 2019-10-11

2506 Exploring the Pannexin 1 interactome: In silico cross-analyses with postsynaptic proteins and neuropsychiatric disorder susceptibility genes

Frederiksen, S. F.; Wicki-Stordeur, L. E.; Sanchez-Arias, J. C.; Swayne, L. A.

10.1101/801563 — neuroscience — Posted on 2019-10-11

2507 AMP-activated protein kinase is a key regulator of retinal vascular permeability

Dragoni, S.; Caridi, B.; Karatsai, E.; Sarker, M. H.; Turowski, P.

10.1101/802033 — neuroscience — Posted on 2019-10-11

2508 AMP-activated protein kinase and adenylate kinase prevent ATP catastrophe and cytotoxic protein aggregation

Takaine, M.; Imamura, H.; Yoshida, S.

10.1101/801738 — cell biology — Posted on 2019-10-11

2509 Cooperative pattern formation in multi-species bacterial colonies

Curatolo, A. I.; Zhou, N.; Zhao, Y.; Liu, C.; Daerr, A.; Tailleur, J.; Huang, J.-D.

10.1101/798827 — biophysics — Posted on 2019-10-11

2510 scCancer: a package for automated processing of single cell RNA-seq data in cancer

Guo, W.; Wang, D.; Wang, S.; Shan, Y.; Gu, J.

10.1101/800490 — bioinformatics — Posted on 2019-10-11

2511 Disrupted Autophagy and Neuronal Dysfunction in C. elegans Knockin Models of FUS Amyotrophic Lateral Sclerosis

Baskoylu, S.; Chapkis, N.; Unsal, B.; Lins, J.; Simon, J.; Hart, A. C.

10.1101/799932 — neuroscience — Posted on 2019-10-11

2512 A versatile twin-microscope system for light-sheet imaging

Keomanee-Dizon, K.; Fraser, S. E.; Truong, T. V.

10.1101/801688 — biophysics — Posted on 2019-10-11

2513 Transposable elements contribute to regulatory hubs stress-related long noncoding RNAs in Maize

Lv, Y.; Hu, F.; Zhou, Y.; Wu, F.; Zhou, L.; Gaut, B. S.

10.1101/801704 — plant biology — Posted on 2019-10-11

2514 On the correspondence of electrical and optical physiology in in vivo population-scale two-photon calcium imaging.

Ledochowitsch, P.; Huang, L.; Knoblich, U.; Oliver, M.; Lecoq, J.; Reid, R. C.; Li, L.; Zeng, H.; Koch, C.; Waters, J.; de Vries, S.; Buice, M. A.

10.1101/800102 — neuroscience — Posted on 2019-10-11

2515 Parietal prefrontal feedforward connectivity in association with schizophrenia genetic risk and delusions

Borrajo-Greenman, D.; La, M.; Shah, S.; Chen, Q.; Berman, K. F.; Weinberger, D.; Tan, H. Y.

10.1101/801506 — neuroscience — Posted on 2019-10-11

2516 Shifting spaces: which disparity or dissimilarity metrics best summarise occupancy in multidimensional spaces?

Guillerme, T.; Puttick, M. N.; Marcy, A. E.; Weisbecker, V.

10.1101/801571 — evolutionary biology — Posted on 2019-10-11

2517 LRP2 controls sonic hedgehog-dependent differentiation of cardiac progenitor cells during outflow tract formation

Christ, A.; Willnow, T. E.

10.1101/801910 — developmental biology — Posted on 2019-10-11

2518 Tetraspanin Tspan15 is an essential subunit of an ADAM10 scissor complex

Koo, C. Z.; Harrison, N.; Noy, P. J.; Szyroka, J.; Matthews, A. L.; Hsia, H.-E.; Mueller, S. A.; Tushaus, J.; Goulding, J.; Willis, K.; Apicella, C.; Cragoe, B.; Davis, E.; Keles, M.; Malinova, A.; McFarlane, T. A.; Morrison, P. R.; Sykes, M. C.; Ahmed, H.; Di Maio, A.; Seipold, L.; Saftig, P.; Cull, E.; Rubinstein, E.; Poulter, N. S.; Briddon, S. J.; Holliday, N. D.; Lichtenthaler, S. F.; Tomlinson, M. G.

10.1101/800557 — cell biology — Posted on 2019-10-11

2519 Zero-shot imputations across species are enabled through joint modeling of human and mouse epigenomics

Schreiber, J.; Hedge, D.; Noble, W. S.

10.1101/801183 — bioinformatics — Posted on 2019-10-11

2520 KinasepKipred: A Predictive Model for Estimating Ligand-Kinase Inhibitor Constant (pKi).

KC, G.; Hassan, M. M.; Sirimulla, S.

10.1101/798561 — bioinformatics — Posted on 2019-10-11

2521 A fungal arrestin protein contributes to cell cycle progression and pathogenesis

Telzrow, C. L.; Nichols, C.; Castro-Lopez, N.; Wormley, F. L.; Alspaugh, J. A.

10.1101/801829 — microbiology — Posted on 2019-10-11

2522 The Intrinsically Disordered Region of ExbD is Required for Signal Transduction

Kopp, D. R.; Postle, K.

10.1101/797811 — microbiology — Posted on 2019-10-11

2523 Transcranial Electrical Stimulation Motor Threshold Combined with Reverse-Calculated Electric Field Modeling Can Determine Individualized tDCS Dosage

Caulfield, K. A.; Badran, B. W.; DeVries, W. H.; Summers, P. M.; Kofmehl, E.; Li, X.; Borckardt, J. J.; Bikson, M.; George, M. S.

10.1101/798751 — neuroscience — Posted on 2019-10-11

2524 A method for rapid selection of randomly induced mutations in a gene of interest using CRISPR/Cas9 mediated activation of gene expression.

Ng, W. A.; Ma, A.; Chen, M.; Reed, B. H.

10.1101/788372 — genetics — Posted on 2019-10-11

2525 Lysosomal degradation ensures accurate chromosomal segregation to prevent genomic instability

Almacellas, E.; Day, C.; Ambrosio, S.; Tauler, A.; Mauvezin, C.

10.1101/802025 — cell biology — Posted on 2019-10-11

2526 Dataset Decay: the problem of sequential analyses on open datasets

Thompson, W. H.; Wright, J.; Bissett, P. G.; Poldrack, R. A.

10.1101/801696 — bioinformatics — Posted on 2019-10-11

2527 Sequoia: An interactive visual analytics platform for interpretation and feature extraction from nanopore sequencing datasets

Koonchanok, R.; Daulatabad, S. V.; Mir, Q.; Reda, K.; Janga, S. C.

10.1101/801811 — bioinformatics — Posted on 2019-10-11

2528 Identifying relationships between imaging phenotypes and lung cancer-related mutation status: EGFR and KRAS

Pinheiro, G.; Pereira, T.; Dias, C.; Freitas, C.; Hespanhol, V.; Costa, J. L.; Cunha, A.; Oliveira, H.

10.1101/794123 — bioengineering — Posted on 2019-10-11

2529 Nanoparticle delivery of microRNA-146a regulates mechanotransduction in lung macrophages and mitigates lung injury during mechanical ventilation

Bobba, C.; Fei, Q.; Shukla, V.; Lee, H.; Patel, P.; Putman, R.; Spitzer, C.; Tsai, M.; Wewers, M.; Christman, J.; Ballinger, M.; Ghadiali, S.; Englert, J.

10.1101/796557 — molecular biology — Posted on 2019-10-11

2530 Chromosomal assembly and analyses of genome-wide recombination rates in the forest pathogenic fungus Armillaria ostoyae

Heinzelmann, R.; Rigling, D.; Sipos, G.; Münsterkötter, M.; Croll, D.

10.1101/794651 — genomics — Posted on 2019-10-11

2531 Human Endometrial Transcriptome and Progesterone Receptor Cistrome Reveal Important Pathways and Epithelial Regulators

Chi, R.-p. A.; Wang, T.; Adams, N. R.; Wu, S.-p.; Young, S. L.; Spencer, T. E.; DeMayo, F. J.

10.1101/680181 — developmental biology — Posted on 2019-10-11

2532 Membrane constriction and thinning by sequential ESCRT-III polymerization

Nguyen, H. C.; Talledge, N.; McCullough, J.; Sharma, A.; Moss, F. R.; Iwasa, J. H.; Vershinin, M. D.; Sundquist, W. I.; Frost, A.

10.1101/798181 — biophysics — Posted on 2019-10-11

2533 RedMed: Extending drug lexicons for social media applications

Lavertu, A.; Altman, R. B.

10.1101/663625 — bioinformatics — Posted on 2019-10-11

2534 Critical role for Slam/SAP signaling in the thymic developmental programming of IL-17- and IFN-γ-producing γδ T cells

Dienz, O.; DeVault, V. L.; Musial, S. C.; Mistri, S. K.; Mei, L.; Baraev, A.; Dragon, J. A.; Krementsov, D.; Veillette, A.; Boyson, J. E.

10.1101/802728 — immunology — Posted on 2019-10-11

2535 The Acute COPD Exacerbation Prediction Tool (ACCEPT): development and external validation study of a personalised prediction model

Adibi, A.; Sin, D. D.; Safari, A.; Johnson, K. M.; Aaron, S.; FitzGerald, J. M.; Sadatsafavi, M.

10.1101/651901 — epidemiology — Posted on 2019-10-11

2536 Single-neuron representations of spatial targets in humans

Tsitsiklis, M.; Miller, J.; Qasim, S. E.; Inman, C. S.; Gross, R. E.; Willie, J. R.; Smith, E. H.; Sheth, S. A.; Schevon, C. A.; Sperling, M. R.; Sharan, A.; Stein, J. M.; Jacobs, J.

10.1101/523753 — neuroscience — Posted on 2019-10-11

2537 Platelets fuel the inflammasome activation of innate immune cells

Rolfes, V.; Ribeiro, L. S.; Hawwari, I.; Buotcher, L.; Rosero, N. S.; Maasewerd, S.; Santos, M. L. S.; Schmidt, S. V.; Rothe, M.; Stunden, J.; Carvalho, L. H.; Fontes, C. J.; Prochnicki, T.; Arditi, M.; Latz, E.; Franklin, B. S.

10.1101/800771 — immunology — Posted on 2019-10-11

2538 The representation of a two-body shape in the human visual cortex

Abassi, E.; Papeo, L.

10.1101/637082 — neuroscience — Posted on 2019-10-11

2539 How brain reacts to targeted attack at a hub region

Tu, W.; Ma, Z.; Ma, Y.; Zhang, N.

10.1101/767863 — neuroscience — Posted on 2019-10-11

2540 Imprecise neural computations as source of human adaptive behavior in volatile environments

Findling, C.; Chopin, N.; Koechlin, E.

10.1101/799239 — neuroscience — Posted on 2019-10-11

2541 Broad geographic sampling reveals predictable, pervasive, and strong seasonal adaptation in Drosophila

Machado, H.; Bergland, A. O.; Taylor, R.; Tilk, S.; Behrman, E.; Dyer, K.; Fabian, D.; Flatt, T.; Gonzalez, J.; Karasov, T.; Kozeretska, I.; Lazzaro, B. P.; Merritt, T.; Pool, J.; O'Brien, K.; Rajpurohit, S.; Roy, P.; Schaeffer, S.; Serga, S.; Schmidt, P.; Petrov, D.

10.1101/337543 — evolutionary biology — Posted on 2019-10-11

2542 Mosaic evolution, preadaptation, and the evolution of evolvability in apes

Parins-Fukuchi, C.

10.1101/622134 — evolutionary biology — Posted on 2019-10-11

2543 Coexistence of lipid phases stabilizes interstitial water in the outer layer of mammalian skin

MacDermaid, C. M.; Hall, K. W.; DeVane, R. H.; Klein, M. L.; Fiorin, G.

10.1101/786699 — biophysics — Posted on 2019-10-11

2544 Age-linked heterogeneity among oligodendrocyte precursor cells in the cerebral cortex of mice and human

Bribian, A.; Medina-Rodriguez, E.; Josa-Prado, F.; Garcia-Alvarez, I.; Machin-Diaz, I.; Murcia-Belmonte, V.; Vega-Zelaya, L.; Pastor, J.; Garrido, L.; de Castro, F.

10.1101/799544 — neuroscience — Posted on 2019-10-11

2545 In silico hippocampal modeling for multi-target pharmacotherapy in schizophrenia

Sherif, M.; Neymotin, S. A.; Lytton, W.

10.1101/758466 — neuroscience — Posted on 2019-10-11

2546 Systematic profiling of full-length immunoglobulin and T-cell receptor repertoire diversity in rhesus macaque through long read transcriptome sequencing

Brochu, H.; Tseng, E.; Smith, E.; Thomas, M. J.; Jones, A.; Diveley, K.; Law, L.; Hansen, S. G.; Picker, L.; Gale, M.; Peng, X.

10.1101/782938 — immunology — Posted on 2019-10-11

2547 The role of atoh1 genes in the development of the lower rhombic lip during zebrafish hindbrain morphogenesis

Belzunce, I.; Pujades, C.

10.1101/719997 — developmental biology — Posted on 2019-10-11

2548 Transcriptomic learning for digital pathology

Schmauch, B.; Romagnoni, A.; Pronier, E.; Saillard, C.; Maille, P.; Calderaro, J.; Sefta, M.; Toldo, S.; Zaslavskiy, M.; Clozel, T.; Moarii, M.; Courtiol, P.; Wainrib, G.

10.1101/760173 — bioinformatics — Posted on 2019-10-11

2549 The genomic architecture of blood metabolites based on a decade of genome-wide analyses

Hagenbeek, F. A.; Pool, R.; van Dongen, J.; Draisma, H. H. M.; Hottenga, J. J.; Willemsen, G.; Abdellaoui, A.; Fedko, I. O.; den Braber, A.; Visser, P. J.; de Geus, E. J.; Willems van Dijk, K.; Verhoeven, A.; Suchiman, H. E. D.; Beekman, M.; Slagboom, P. E.; van Duijn, C. M.; BBMRI Metabolomics Consortium, ; Harms, A. C.; Hankemeier, T.; Bartels, M.; Nivard, M. G.; Boomsma, D. I.

10.1101/661769 — genetics — Posted on 2019-10-11

2550 Local adaptation and hybrid failure share a common genetic basis

Walter, G. M.; Aguirre, J. D.; Wilkinson, M. J.; Richards, T. J.; Blows, M. W.; Ortiz-Barrientos, D.

10.1101/520809 — evolutionary biology — Posted on 2019-10-11

2551 Long-term dynamics of aberrant neuronal activity in Alzheimer’s disease

Korzhova, V.; Marinkovic, P.; Goltstein, P. M.; Herms, J.; Liebscher, S.

10.1101/801902 — neuroscience — Posted on 2019-10-11

2552 FUS-dependent phase separation initiates double-strand break repair

Lenzken, S. C.; Levone, B. R.; Filosa, G.; Antonaci, M.; Conte, F.; Kizilirmak, C.; Reber, S.; Loffreda, A.; Biella, F.; Ronchi, A. E.; Muhlemann, O.; Bachi, A.; Ruepp, M.-D.; Barabino, S. M. L.

10.1101/798884 — molecular biology — Posted on 2019-10-11

2553 Binding of the motor protein SecA to the bacterial protein translocation channel SecYEG in the absence of ATP

Winkler, K.; Karner, A.; Horner, A.; Hannesschlaeger, C.; Knyazev, D.; Siligan, C.; Zimmermann, M.; Kuttner, R.; Pohl, P.; Preiner, J.

10.1101/799247 — biophysics — Posted on 2019-10-11

2554 FusB energises import across the outer membrane through direct interaction with its ferredoxin substrate

Wojnowska, M.; Walker, D.

10.1101/749960 — microbiology — Posted on 2019-10-11

2555 Out of the abyss: Genome and metagenome mining reveals unexpected environmental distribution of abyssomicins

Iglesias, A.; Latorre-Perez, A.; Stach, J. E. M.; Porcar, M.; Pascual, J.

10.1101/789859 — microbiology — Posted on 2019-10-11

2556 Chromosome-level assemblies of multiple Arabidopsis genomes reveal hotspots of rearrangements with altered evolutionary dynamics

Jiao, W.-B.; Schneeberger, K.

10.1101/738880 — genomics — Posted on 2019-10-11

2557 UNC-10/SYD-2 complex is sufficient to link kinesin-3 UNC-104 to RAB-3 containing synaptic vesicles in the absence of the motor’s PH domain

Bhan, P.; Bayansan, O.; Chang, C.-Y.; Wagner, O.

10.1101/723247 — cell biology — Posted on 2019-10-11

2558 Fibroblast-specific IL11 signaling is required for lung fibrosis and inflammation

Ng, B.; Dong, J.; Viswanathan, S.; Widjaja, A. A.; Paleja, B. S.; Adami, E.; Ko, N. S. J.; Wang, M.; Lim, S.; Tan, J.; Chothani, S. P.; Albani, S.; Schafer, S.; Cook, S. A.

10.1101/801852 — cell biology — Posted on 2019-10-11

2559 Visualization of the Dynamics of Histone Modifications and Their Crosstalk Using PTM-CrossTalkMapper

Kirsch, R.; Jensen, O. N.; Schwämmle, V.

10.1101/801837 — bioinformatics — Posted on 2019-10-11

2560 Whole genome analysis identifies the association of TP53 genomic deletions with lower survival in Stage III colorectal cancer

Xia, L. C.; Van Hummelen, P.; Kubit, M.; Lee, H.; Bell, J.; Grimes, S. M.; Wood-Bouwens, C.; Greer, S.; Barker, T.; Haslem, D.; Ford, J.; Fulde, G.; Ji, H.; Nadauld, L.

10.1101/784645 — genomics — Posted on 2019-10-11

2561 DNA methylation-based forensic age estimation in human bone

Gopalan, S.; Gaige, J.; Henn, B. M.

10.1101/801647 — genetics — Posted on 2019-10-11

2562 Dendrites with specialized glial attachments develop by retrograde extension using SAX-7 and GRDN-1

Cebul, E. R.; McLachlan, I. G.; Heiman, M. G.

10.1101/801761 — developmental biology — Posted on 2019-10-11

2563 Marizomib suppresses triple-negative breast cancer via proteasome and oxidative phosphorylation inhibition

Raninga, P. V.; Lee, A.; Sinha, D.; Dong, L.-f.; Datta, K. K.; Lu, X.; Kalita-de Croft, P.; Dutt, M.; Hill, M. M.; Pouliot, N. M.; Gowda, H.; Kalimutho, M.; Neuzil, J.; Khanna, K. K.

10.1101/801720 — cancer biology — Posted on 2019-10-11

2564 Collagen I weakly interacts with the β-sheets of β2-microglobulin and enhances conformational exchange to induce amyloid formation

Hoop, C. L.; Zhu, J.; Bhattacharya, S.; Tobita, C. A.; Radford, S. E.; Baum, J.

10.1101/801522 — biophysics — Posted on 2019-10-11

2565 Zonation-dependent single-endothelial cell transcriptomic changes in the aged brain

Zhao, L.; Li, Z.; Vong, J. S. L.; Chen, X.; Lai, H.-M.; Yan, L. Y. C.; Huang, J.; Sy, S. K. H.; Tian, X.; Huang, Y.; Chan, H. Y. E.; So, H.-C.; Ng, W.-L.; Tang, Y.; Lin, W.-J.; Mok, V. C. T.; Ko, H.

10.1101/800318 — neuroscience — Posted on 2019-10-11

2566 Revealing the molecular origins of fibrin’s elastomeric properties by in situ X-ray scattering

Vos, B. E.; Martinez-Torres, C.; Burla, F.; Weisel, J. W.; Koenderink, G. H.

10.1101/797464 — biophysics — Posted on 2019-10-11

2567 Shared transcriptional responses to con- and heterospecific behavioral antagonists in a wild songbird

Louder, M. I. M.; Lafayette, M. J.; Louder, A. N. A.; Uy, F. M. K.; Balakrishnan, C.; Yasukawa, K.; Hauber, M. E.

10.1101/795757 — animal behavior and cognition — Posted on 2019-10-11

2568 Age of seizure onset as a major determinant of memory changes following surgery for hippocampal sclerosis

Leal-Conceicao, E.; Bianchin, M.; Vendramini Borelli, W.; Januario de Oliveira, L.; Palmini, A.; Radaelli, G.; Wagner, M.; Paglioli, E.; Spencer Escobar, V.; Dacosta, J.; Wetters Portuguez, M.

10.1101/800888 — neuroscience — Posted on 2019-10-11

2569 A Survey and Systematic Assessment of Computational Methods for Drug Response Prediction

Chen, J.; Zhang, L.

10.1101/697896 — bioinformatics — Posted on 2019-10-11

2570 Forty high-intensity interval training sessions blunt exercise-induced changes in the nuclear protein content of PGC-1α and p53 in human skeletal muscle

Granata, C.; Oliveira, R. S. F.; Little, J. P.; Bishop, D. J.

10.1101/580373 — physiology — Posted on 2019-10-11

2571 Secondary Motor Cortex Transforms Spatial Information into Planned Action During Navigation

Olson, J. M.; Li, J.; Montgomery, S. E.; Nitz, D. A.

10.1101/776765 — neuroscience — Posted on 2019-10-11

2572 A Spiking Neuron and Population Model based on the Growth Transform Dynamical System

Gangopadhyay, A.; Mehta, D.; Chakrabartty, S.

10.1101/523944 — neuroscience — Posted on 2019-10-11

2573 Properties of rhizosphere soil associated with herbaceous plant roots analyzed using small-scale protocols

Yamazaki, S.; Ochiai, K.; Motokawa, J.; Hamamoto, S.; Sugiyama, A.; Kobayashi, M.

10.1101/800664 — plant biology — Posted on 2019-10-10

2574 The amino acid residue in position 163 of canine PrPC is critical to the exceptional resistance of dogs to prion infections: evidence from transgenic mouse models

Vidal, E.; Fernandez-Borges, N.; Erana, H.; Parra, B.; Pintado, B.; Sanchez-Martin, M.; Charco, J. M.; Ordonez, M.; Perez-Castro, M. A.; Pumarola, M.; Mathiason, C. K.; Mayoral, T.; Castilla, J.

10.1101/800698 — neuroscience — Posted on 2019-10-10

2575 Decorin inhibits glucose-induced lens epithelial cell apoptosis via suppressing p22phox-p38 MAPK signaling pathway

Du, S.; Shao, J.; Xie, D.; Zhang, F.

10.1101/800680 — cell biology — Posted on 2019-10-10

2576 Usefulness of a familiarity signal during recognition depends on test format: Neurocognitive evidence for a core assumption of the CLS framework

Bader, R.; Mecklinger, A.; Meyer, P.

10.1101/797837 — neuroscience — Posted on 2019-10-10

2577 Partner-specific induction of Spodoptera frugiperda immune genes in response to the entomopathogenic nematobacterial complex Steinernema carpocapsae-Xenorhabdus nematophila

Huot, L.; Bigourdan, A.; Pages, S.; Ogier, J.-C.; Girard, P.-A.; Negre, N.; Duvic, B.

10.1101/800656 — immunology — Posted on 2019-10-10

2578 Chromatiblock: scalable whole-genome visual-ization of structural differences in prokaryotes

Sullivan, M. J.; van Bakel, H.

10.1101/800920 — bioinformatics — Posted on 2019-10-10

2579 GAL4/GFP enhancer-trap lines for identification and manipulation of cells and tissues in developing Arabidopsis leaves

Amalraj, B.; Govindaraju, P.; Krishna, A.; Lavania, D.; Linh, N. M.; Ravichandran, S. J.; Scarpella, E.

10.1101/801357 — plant biology — Posted on 2019-10-10

2580 A high-content screen identifies the vulnerability of MYC-overexpressing cells to dimethylfasudil

Zhang, J.; Zhang, S.; Shi, Q.; Allen, T.; You, F.; Yang, D.

10.1101/801134 — cancer biology — Posted on 2019-10-10

2581 High-resolution Linkage Map with Allele Dosage Allows the Identification of an Apomixis Region and Complex Traits in Guinea Grass (Megathyrsus maximus)

Deo, T. G.; Ferreira, R. C. U.; Lara, L. A. d. C.; Moraes, A. d. C. L.; Alves-Pereira, A.; de Oliveira, F. A.; Garcia, A. A. F.; Santos, M. F.; Jank, L.; de Souza, A. P.

10.1101/801399 — plant biology — Posted on 2019-10-10

2582 A Distinctive Pattern of Hippocampal-Prefrontal Cortical Network Activity during Stress Predicts Learned Resistance

Marques, D. B.; Ruggiero, R. N.; Bueno-Junior, L. S.; Rossignoli, M. T.; Leite, J. P.

10.1101/801365 — neuroscience — Posted on 2019-10-10

2583 \"Metabolic contest\", a new way to control carbon source preference

Allmann, S.; Wargnies, M.; Cahoreau, E.; Biran, M.; Plazolles, N.; Pauline, M.; Pineda Ramirez, E.; Kulyk, H.; Asencio, C.; Villafraz, O.; Riviere, L.; Tetaud, E.; Rotureau, B.; Mourier, A.; Portais, J.-C.; Bringaud, F.

10.1101/800839 — microbiology — Posted on 2019-10-10

2584 Limited plasticity of Drosophila suzukii wing spot size in response to developmental temperature

Varon Gonzalez, C.; Fraimout, A.; Debat, V.

10.1101/800417 — ecology — Posted on 2019-10-10

2585 Multi-timescale hybrid components of the functional brain connectome: A bimodal EEG-fMRI decomposition

Wirsich, J.; Amico, E.; Guye, M.; Ranjeva, J.-P.; Giraud, A.-L.; Goni, J.; Sadaghiani, S.

10.1101/800797 — neuroscience — Posted on 2019-10-10

2586 Engineered fibre enables targeted activation of butyrate producing microbiota in the distal gut

Michalak, L.; Gaby, J. C.; Lagos, L.; La Rosa, S. L.; Terrapon, N.; Lombard, V.; Henrissat, B.; Arntzen, M.; Hagen, L. H.; Droge, J.; Overland, M.; Pope, P. B.; Westereng, B.

10.1101/799023 — microbiology — Posted on 2019-10-10

2587 Deciphering the transcriptomic landscape of tumor-infiltrating CD8 lymphocytes in B16 melanoma tumors with single-cell RNA-Seq

Carmona, S. J.; Siddiqui, I.; Bilous, M.; Held, W.; Gfeller, D.

10.1101/800847 — immunology — Posted on 2019-10-10

2588 Does researcher activity affect Dromiciops gliroides capture rates? A test in two contrasting forest habitats

Salazar, D. A.; Fonturbel, F. E.

10.1101/801332 — ecology — Posted on 2019-10-10

2589 Parallel 1024-ch Cyclic Voltammetry on Monolithic CMOS Electrochemical Detector Array

White, K. A.; Mulberry, G.; Kim, B. N.

10.1101/799916 — bioengineering — Posted on 2019-10-10

2590 Differences in directed functional brain connectivity related to age and sex

Lund, M. J.; Alnaes, D.; Schwab, S.; van der Meer, D.; Andreassen, O. A.; Westlye, L. T.; Kaufmann, T.

10.1101/799593 — neuroscience — Posted on 2019-10-10

2591 Genetic Rescue of Fragile X Syndrome Links FMRP Deficiency to Codon Optimality-Dependent RNA Destabilization

Shu, H. R.; Donnard, E.; Liu, B.; Richter, J.

10.1101/801449 — molecular biology — Posted on 2019-10-10

2592 Out of the abyss: Genome and metagenome mining reveals unexpected environmental distribution of abyssomicins

Iglesias, A.; Latorre-Perez, A.; Stach, J. E. M.; Porcar, M.; Pascual, J.

10.1101/789859 — microbiology — Posted on 2019-10-10

2593 Modelling Niemann-Pick disease type C in a human haploid cell line allows for patient variant characterization and clinical interpretation.

Erwood, S.; Brewer, R. A.; Bily, T. M. I.; Maino, E.; Zhou, L.; Cohn, R. D.; Ivakine, E. A.

10.1101/801019 — genetics — Posted on 2019-10-10

2594 raxmlGUI 2.0 beta: a graphical interface and toolkit for phylogenetic analyses using RAxML

Edler, D.; Klein, J.; Antonelli, A.; Silvestro, D.

10.1101/800912 — bioinformatics — Posted on 2019-10-10

2595 Tailor-made sRNAs: a toolbox to control metabolic targets

Apura, P.; Peregrina, A.; Saramago, M.; Viegas, S. C.; Carvalho, S. M.; Saraiva, L. M.; Domingues, S.; Arraiano, C. M.

10.1101/801027 — synthetic biology — Posted on 2019-10-10

2596 Assessing circular RNAs in Alzheimer disease

Cervera-Carles, L.; Dols-Icardo, O.; Cervantes-Gonzalez, A.; Molina-Porcel, L.; Munoz-Llahuna, L.; Clarimon, J.

10.1101/800342 — genomics — Posted on 2019-10-10

2597 Association between breastfeeding and DNA methylation over the life course: findings from the Avon Longitudinal Study of Parents and Children (ALSPAC)

Hartwig, F. P.; Davey Smith, G.; Simpkin, A. J.; Victora, C. G.; Relton, C. L.; Caramaschi, D.

10.1101/800722 — genetics — Posted on 2019-10-10

2598 Genetic signatures of evolutionary rescue by a selective sweep

Osmond, M. M.; Coop, G.

10.1101/800201 — evolutionary biology — Posted on 2019-10-10

2599 Genetic diversity and thermal performance in invasive and native populations of African fig flies

Comeault, A. A.; Wang, J.; Tittes, S.; Isbell, K.; Ingley, S.; Hurlbert, A. H.; Matute, D. R.

10.1101/800938 — evolutionary biology — Posted on 2019-10-10

Koch, M.; Duigou, T.; Faulon, J.-L.

10.1101/800474 — bioinformatics — Posted on 2019-10-10

2601 Biomechanical Modelling of Sitting Movements for Designing Robotic Lower-Limb Prostheses and Exoskeletons with Energy Regeneration

Laschowski, B.; Sharif Razavian, R.; McPhee, J.

10.1101/801258 — bioengineering — Posted on 2019-10-10

2602 Genomic profiling of circulating tumor DNA reveals genetics and residual disease in NK/T lymphoma

rao, J.; Zhang, W.; Li, Q.; Xiong, J.-K.; Li, J.-L.; Liu, J.; Chen, T.; Yao, H.; Wen, Q.; Zeng, Y.-J.; Gao, L.; Gao, L.; Zhang, C.; Kong, P.-Y.; Liu, Y.; Zhang, X.

10.1101/800409 — genomics — Posted on 2019-10-10

2603 Cell Type-specific Genome Scans of DNA Methylation Diversity Indicate an Important Role for Transposable Elements

Kartal, O.; Schmid, M. W.; Grossniklaus, U.

10.1101/801233 — genomics — Posted on 2019-10-10

2604 Citizen-Centered, Auditable, and Privacy-Preserving Population Genomics

Grishin, D.; Raisaro, J. L.; Troncoso-Pastoriza, J. R.; Obbad, K.; Quinn, K.; Misbach, M.; Gollhardt, J.; Sa, J.; Fellay, J.; Church, G. M.; Hubaux, J.-P.

10.1101/799999 — genomics — Posted on 2019-10-10

2605 Novel metabarcoded DNA sequencing tool for the detection of Plasmodium species in malaria positive patients

Wahab, A.; Shaukat, A.; Ali, Q.; Hussain, M.; Khan, T. A.; Khan, M. A. U.; Rashid, I.; Saleem, M. A.; Evans, M.; Sargison, N.; Chaudhry, U.

10.1101/801175 — genetics — Posted on 2019-10-10

2606 Quantitative proteomics and transcriptomics exploration of primary myeloid cells: importance of β tubulin isotypes for bone resorption.

Guerit, D.; Marie, P.; Morel, A.; Maurin, J.; Verollet, C.; Raynaud-Messina, B.; Urbach, S.; BLANGY, A.

10.1101/800516 — cell biology — Posted on 2019-10-10

2607 Exceptional biostability of paranemic crossover (PX) DNA, crossover-dependent nuclease resistance, and implications for DNA nanotechnology

Chandrasekaran, A. R.; Vilcapoma, J.; Halvorsen, K.

10.1101/801407 — bioengineering — Posted on 2019-10-10

2608 Thyroid hormone receptor beta mutations alter photoreceptor development and function in Danio rerio (zebrafish)

Deveau, C.; Jiao, X.; Suzuki, S.; Krishnakumar, A.; Yoshimatsu, T.; Hejtmancik, J. F.; Nelson, R. F.

10.1101/800821 — neuroscience — Posted on 2019-10-10

2609 Single-nucleus RNA-seq identifies Huntington disease astrocyte states

Al-Dalahmah, O.; Sosunov, A. A.; Shaik, A.; Ofori, K.; Liu, Y.; Vonsattel, J. P. G.; Adorjan, I.; Menon, V.; Goldman, J. E.

10.1101/799973 — neuroscience — Posted on 2019-10-10

2610 Visual discrimination of optical material properties: a large-scale study

Sawayama, M.; Dobashi, Y.; Okabe, M.; Hosokawa, K.; Koumura, T.; Saarela, T.; Olkkonen, M.; Nishida, S.

10.1101/800870 — neuroscience — Posted on 2019-10-10

2611 Adaptive time scales in recurrent neural networks

Quax, S. C.; D'Asaro, M.; van Gerven, M. A. J.

10.1101/800540 — neuroscience — Posted on 2019-10-10

2612 Conservation of an Ancient Oxidation Response That Controls Archaeal Epigenetic Traits Through Chromatin Protein Networks

Payne, S.; Facciotti, M.; Van Cott, K.; Yao, A.; Wilson, M. A.; Sutter, S.; Rodriguez-Acevedo, K. L.; Blum, P.

10.1101/801316 — microbiology — Posted on 2019-10-10

2613 Genomes of Symbiodiniaceae reveal extensive sequence divergence but conserved functions at family and genus levels

Gonzalez-Pech, R. A.; Chen, Y.; Stephens, T. G.; Shah, S.; Mohamed, A. R.; Lagorce, R.; Bhattacharya, D.; Ragan, M. A.; Chan, C. X.

10.1101/800482 — genomics — Posted on 2019-10-10

2614 Heterosis indices: What do we really measure?

de Vienne, D.; Fievet, J. B.

10.1101/800441 — genetics — Posted on 2019-10-10

2615 Inference of population genetic structure from temporal samples of DNA

Francois, O.; Demaille, B.; Severine, L.; Jay, F.

10.1101/801324 — evolutionary biology — Posted on 2019-10-10

2616 Interplay between cortical actin and E-cadherin dynamics regulates cell shape in the Drosophila embryonic epidermis

Greig, J.; Bulgakova, N. A.

10.1101/801456 — developmental biology — Posted on 2019-10-10

2617 BiomeSeq: A Tool for the Characterization of Animal Microbiomes from Metagenomic Data

Mulholland, K. A.; Keeler, C. L.

10.1101/800995 — bioinformatics — Posted on 2019-10-10

2618 DAMEfinder: A Method to Detect Differential Allele-Specific Methylation

Orjuela, S.; Machlab, D.; Menigatti, M.; Marra, G.; Robinson, M. D.

10.1101/800383 — bioinformatics — Posted on 2019-10-10

2619 Freezing displayed by others is a learned cue of danger resulting from co-experiencing own-freezing and shock

Cruz, A.; Heinemans, M.; Marquez, C.; Moita, M. A.

10.1101/800714 — animal behavior and cognition — Posted on 2019-10-10

2620 Developmental Changes in Visual Responses to Social Interactions

Walbrin, J.; Mihai, I.; Landsiedel, J.; Koldewyn, K.

10.1101/800532 — neuroscience — Posted on 2019-10-10

2621 Homeostatic regulation of perisynaptic MMP9 activity in the amblyopic visual cortex

Murase, S.; Winkowski, D. E.; Liu, J.; Kanold, P. O.; Quinlan, E. M.

10.1101/796623 — neuroscience — Posted on 2019-10-10

2622 A hierarchical model of perceptual multistability involving interocular grouping

Wang, Y.; Kilpatrick, Z. P.; Josic, K.

10.1101/800219 — neuroscience — Posted on 2019-10-10

2623 A link between mitochondrial gene expression and life stage morphologies in Trypanosoma cruzi

Ramirez-Barrios, R.; Susa, E. K.; Faacks, S. P.; Liggett, C. K.; Zimmer, S. L.

10.1101/798421 — molecular biology — Posted on 2019-10-10

2624 Resolving cellular systems by ultra-sensitive and economical single-cell transcriptome filtering

Vallejo, A. F.; Davies, J.; Grover, A.; Tsai, c.-h.; Jepras, R.; Polak, M. E.; West, J. E.

10.1101/800631 — molecular biology — Posted on 2019-10-10

2625 Numerous post-translational modifications of RNA polymerase II subunit Rpb4 link transcription to post-transcriptional mechanisms

Richard, S.; Gross, L.; Fischer, J.; Bendalak, K.; Ziv, T.; Urim, S.; Choder, M.

10.1101/798603 — molecular biology — Posted on 2019-10-10

2626 Conditional knockout of RAD51-related genes in Leishmania major reveals a critical role for homologous recombination during genome replication

Damasceno, J. D.; Reis-Cunha, J.; Crouch, K.; Lapsley, C.; Tosi, L.; Bartholomeu, D.; McCulloch, R.

10.1101/800573 — microbiology — Posted on 2019-10-10

2627 Characterization of novel regulators for heat stress tolerance in tomato from Indian sub-continent

Balyan, S.; Rao, S.; Jha, S.; Bansal, C.; Das, J. R.; Mathur, S.

10.1101/800607 — genomics — Posted on 2019-10-10

2628 Multi-model functionalization of disease-associated PTEN missense mutations identifies multiple molecular mechanisms underlying protein dysfunction

Post, K. L.; Belmadani, M.; Ganguly, P.; Meili, F.; Dingwall, R.; McDiarmid, T. A.; Meyers, W. M.; Herrington, C.; Young, B. P.; Callaghan, D. B.; Rogic, S.; Edwards, M.; Niciforovic, A.; Cau, A.; Rankin, C.; OConnor, T. P.; Bamji, S. X.; Loewen, C. J.; Allan, D. W.; Pavlidis, P.; Haas, K.

10.1101/800011 — genetics — Posted on 2019-10-10

2629 TRACE: transcription factor footprinting using DNase I hypersensitivity data and DNA sequence

Ouyang, N.; Boyle, A. P.

10.1101/801001 — bioinformatics — Posted on 2019-10-10

2630 Spectral Jaccard Similarity: A new approach to estimating pairwise sequence alignments

Baharav, T.; Kamath, G. M.; Tse, D. N.; Shomorony, I.

10.1101/800581 — bioinformatics — Posted on 2019-10-10

2631 S-conLSH: Alignment-free gapped mapping of noisy long reads

Chakraborty, A.; Morgenstern, B.; Bandyopadhyay, S.

10.1101/801118 — bioinformatics — Posted on 2019-10-10

2632 Loss of UGP2 in brain leads to a severe epileptic encephalopathy, emphasizing that bi-allelic isoform specific start-loss mutations of essential genes can cause genetic diseases

Perenthaler, E.; Nikoncuk, A.; Yousefi, S.; Berdowski, W. M.; Capo, I.; van der Linde, H. C.; van den Berg, P.; Jacobs, E. H.; Putar, D.; Ghazvini, M.; Aronica, E.; van IJcken, W. F. J.; de Valk, W. G.; Medici-van den Herik, E.; van Slegtenhorst, M.; Brick, L.; Kozenko, M.; Kohler, J. F.; Bernstein, J. A.; Monaghan, K. G.; Begtrup, A.; Torene, R.; Al Futaisi, A.; Al Murshedi, F.; Mani, R.; Al Azri, F.; Kamsteeg, E.-J.; Mojarrad, M.; Eslahi, A.; Khazaei, Z.; Massinaei Darmiyan, F.; Doosti, M.; Ghayoor Karimiani, E.; Vandrovcova, J.; Zafar, F.; Rana, N.; Kandaswamy, K. K.; Hertecant, J.; Bauer,

10.1101/799841 — genetics — Posted on 2019-10-10

2633 Identification and Utilization of Copy Number Information for Correcting Hi-C Contact Map of Cancer Cell Line

Khalil, A. I. S.; Muzaki, S. R. M.; Chattopadhyay, A.; Sanyal, A.

10.1101/798710 — bioinformatics — Posted on 2019-10-10

2634 Occasion setters determine responses of putative dopamine neurons to discriminative stimuli

Aquili, L.; Bowman, E. M.; Schmidt, R.

10.1101/799387 — neuroscience — Posted on 2019-10-10

2635 Age of seizure onset as a major determinant of memory changes following surgery for hippocampal sclerosis

Leal-Conceicao, E.; Bianchin, M.; Vendramini Borelli, W.; Januario de Oliveira, L.; Palmini, A.; Radaelli, G.; Wagner, M.; Paglioli, E.; Spencer Escobar, V.; Dacosta, J.; Wetters Portuguez, M.

10.1101/800888 — neuroscience — Posted on 2019-10-10

2636 Control of Social Withdrawal of Mice Deficient for the Autism Gene Magel2 by Restoration of Vasopressin-Oxytocin Dialogue in Septum

Borie, A. M.; Dromard, Y.; Dufner, D.; Pollozi, E.; Huzard, D.; Tomboli, C.; Olma, A.; Manning, M.; Colson, P.; Guillon, G.; Muscatelli, F.; Desarmenien, M. G.; Jeanneteau, F.

10.1101/800425 — neuroscience — Posted on 2019-10-10

2637 TEsorter: lineage-level classification of transposable elements using conserved protein domains

Zhang, R.-G.; Wang, Z.-X.; Ou, S.; Li, G.-Y.

10.1101/800177 — bioinformatics — Posted on 2019-10-10

2638 A G-protein-coupled receptor mediates neuropeptide-induced oocyte maturation in the jellyfish Clytia

Quiroga Artigas, G.; Lapebie, P.; Leclere, L.; Bauknecht, P.; Uveira, J.; Chevalier, S.; Jekely, G.; Momose, T.; Houliston, E.

10.1101/801225 — developmental biology — Posted on 2019-10-10

2639 FMRP Control of Ribosome Translocation Promotes Chromatin Modifications and Alternative Splicing of Neuronal Genes Linked to Autism

Richter, J.; Huber, K.; Shah, S.; Molinaro, G.; Liu, B.; Wang, R.

10.1101/801076 — neuroscience — Posted on 2019-10-10

2640 Neurodevelopmental shifts in learned value transfer on cognitive control during adolescence

Insel, C.; Charifson, M.; Somerville, L. H.

10.1101/801126 — neuroscience — Posted on 2019-10-10

2641 Accurate in vivo population sequencing uncovers drivers of within-host genetic diversity in viruses

Gelbart, M.; Harari, S.; Ben-Ari, Y.; Kustin, T.; Wolf, D.; Mandelboim, M.; Mor, O.; Pennings, P. S.; Stern, A.

10.1101/349498 — evolutionary biology — Posted on 2019-10-10

2642 A single-cell transcriptional atlas identifies extensive heterogeneity in the cellular composition of tendons

Swanson, J. B.; De Micheli, A. J.; Disser, N. P.; Martinez, L. M.; Walker, N. R.; Cosgrove, B. D.; Mendias, C. L.

10.1101/801266 — cell biology — Posted on 2019-10-10

2643 Transient Reprogramming of Neonatal Cardiomyocytes to a Proliferative Dedifferentiated State

Kisby, T.; de Lazaro, I.; Stylianou, M.; Cossu, G.; Kostarelos, K.

10.1101/801092 — cell biology — Posted on 2019-10-10

2644 Single-molecule study of the dynamic organization of Vascular Endothelial Growth Factor Receptor 2 on the endothelial cell surface

da Rocha-Azevedo, B.; Lee, S.; Dasgupta, A.; Vega, A. R.; de Oliveira, L. R.; Kim, T.; Kittisopikul, M.; Jaqaman, K.

10.1101/800946 — biophysics — Posted on 2019-10-10

2645 High-fidelity continuum modeling predicts avian voiced sound production

Jiang, W.; Rasmussen, J. H.; Xue, Q.; Ding, M.; Zheng, X.; Elemans, C. P.

10.1101/790857 — zoology — Posted on 2019-10-10

2646 Zonation-dependent single-endothelial cell transcriptomic changes in the aged brain

Zhao, L.; Li, Z.; Vong, J. S. L.; Chen, X.; Lai, H.-M.; Yan, L. Y. C.; Huang, J.; Sy, S. K. H.; Tian, X.; Huang, Y.; Chan, H. Y. E.; So, H.-C.; Ng, W.-L.; Tang, Y.; Lin, W.-J.; Mok, V. C. T.; Ko, H.

10.1101/800318 — neuroscience — Posted on 2019-10-10

2647 Listener’s vmPFC simulates speaker choices when reading between the lines

Mi, Q.; Wang, C.; Camerer, C. F.; Zhu, L.

10.1101/800359 — neuroscience — Posted on 2019-10-10

2648 Functional characterization of Komagataella phaffii centromeres by a color-based plasmid stability assay

Piva, L. C.; De Marco, J.; Moraes, L.; Reis, V.; Torres, F. A. G.

10.1101/433417 — molecular biology — Posted on 2019-10-10

2649 Pick Your Poison: Benzalkonium Chloride and Copper Enable Nanocellulose Derivatives to Form Antimicrobial Properties Against a Spectrum of Microorganisms

Winans, M. J.; Gallagher, J. E. G.; Jaczynski, J.; Oporto, G.

10.1101/783076 — microbiology — Posted on 2019-10-10

2650 Genomic prediction informed by biological processes expands our understanding of the genetic architecture underlying free amino acid traits in dry Arabidopsis seeds

Turner-Hissong, S. D.; Bird, K. A.; Lipka, A. E.; King, E. G.; Beissinger, T. M.; Angelovici, R.

10.1101/272047 — genetics — Posted on 2019-10-10

2651 Inference of coevolutionary dynamics and parameters from host and parasite polymorphism data of repeated experiments

Maerkle, H.; Tellier, A.

10.1101/625301 — evolutionary biology — Posted on 2019-10-10

2652 A low-cost, open source, self-contained bacterial EVolutionary biorEactor (EVE)

Gopalakrishnan, V.; Krishnan, N. P.; McClure, E.; Pelesko, J.; Guo, D.; Williamson, D. F. K.; Webster, N.; Ecker, D.; Nichol, D.; Mandal, S.; Bonomo, R. A.; Scott, J. G.

10.1101/729434 — bioengineering — Posted on 2019-10-10

2653 Sub-optimality of the early visual system explained through biologically plausible plasticity

Chauhan, T.; Masquelier, T.; Cottereau, B. R.

10.1101/799155 — systems biology — Posted on 2019-10-10

2654 Predicting cellular position in the Drosophila embryo from Single-Cell Transcriptomics data

Tanevski, J.; Nguyen, T.; Truong, B.; Karaiskos, N.; Ahsen, M. E.; Zhang, X.; Shu, C.; Hu, Y.; Pham, H. V. V.; Li, X.; Le, T. D.; Tarca, A.; Bhatti, G.; Romero, R.; Karathanasis, N.; Loher, P.; Chen, Y.; Ouyang, Z.; Mao, D.; Zhang, Y.; Zand, M.; Ruan, J.; Hafemeister, C.; Qiu, P.; Tran, D.; Nguyen, T.; Gabor, A.; Yu, T.; Glaab, E.; Krause, R.; Banda, P.; Stolovitzky, G.; Rajewsky, N.; Saez-Rodriguez, J.; Meyer, P.

10.1101/796029 — systems biology — Posted on 2019-10-10

2655 Reptile-like physiology in Early Jurassic stem-mammals

Newham, E.; Gill, P. G.; Brewer, P.; Benton, M. J.; Fernandez, V.; Gostling, N. J.; Haberthür, D.; Kankaanpaa, T.; Kallonen, A.; Navarro, C.; Pacureanu, A.; Zeller-Plumhoff, B.; Richards, K.; Robson-Brown, K.; Schneider, P.; Suhonen, H.; Tafforeau, P.; Williams, K.; Corfe, I. J.

10.1101/785360 — paleontology — Posted on 2019-10-10

2656 Microglial ERK signaling is a critical regulator of pro-inflammatory immune responses in Alzheimer’s disease

Chen, M. J.; Ramesha, S.; Weinstock, L. D.; Gao, T.; Ping, L.; Xiao, H.; Dammer, E. B.; Duong, D. D.; Levey, A. I.; Lah, J. J.; Wood, L. B.; Rangaraju, S.

10.1101/798215 — neuroscience — Posted on 2019-10-10

2657 Age-linked heterogeneity among oligodendrocyte precursor cells in the cerebral cortex of mice and human

Bribian, A.; Medina-Rodriguez, E.; Josa-Prado, F.; Garcia-Alvarez, I.; Machin-Diaz, I.; Murcia-Belmonte, V.; Vega-Zelaya, L.; Pastor, J.; Garrido, L.; de Castro, F.

10.1101/799544 — neuroscience — Posted on 2019-10-10

2658 Sonic Hedgehog Signaling (Shh) regulates the developmental shift of GABA polarity in rat somatosensory cortex

Delmotte, Q.; Medina, I.; Hamze, M.; Buhler, E.; Zhang, J.; Belgacem, Y. H.; Porcher, C.

10.1101/799015 — neuroscience — Posted on 2019-10-10

2659 Effects of enriched housing on the neuronal morphology of mice that lack zinc transporter 3 (ZnT3) and vesicular zinc

McAllister, B. B.; Thackray, S.; Garcia de la Orta, B. K.; Gosse, E.; Tak, P.; Chipak, C.; Rehal, S.; Valverde Rascon, A.; Dyck, R. H.

10.1101/754747 — neuroscience — Posted on 2019-10-10

2660 Microstructures amplify seemingly honest signals in carotenoid-colored tanagers

McCoy, D. E.; Shultz, A. J.; Vidoudez, C.; van der Heide, E.; Trauger, S. A.; Haig, D.

10.1101/799783 — evolutionary biology — Posted on 2019-10-10

2661 Choosing the optimal population for a genome-wide association study: a simulation using whole-genome sequences from rice

Hamazaki, K.; Kajiya-Kanegae, H.; Yamasaki, M.; Ebana, K.; Yabe, S.; Nakagawa, H.; Iwata, H.

10.1101/798850 — genomics — Posted on 2019-10-10

2662 Evolution of microbial growth traits under serial dilution

Lin, J.; Manhart, M.; Amir, A.

10.1101/798678 — evolutionary biology — Posted on 2019-10-10

2663 Hypermutation in Cryptococcus reveals anovel pathway to 5-fluorocytosine (5FC) resistance

Billmyre, R. B.; Applen Clancey, S.; Li, L. X.; Doering, T. L.; Heitman, J.

10.1101/636928 — microbiology — Posted on 2019-10-10

2664 A powerful subset-based gene-set analysis method identifies novel associations and improves interpretation in UK Biobank

Dutta, D.; VandeHaar, P.; Scott, L.; Boehnke, M.; Lee, S.

10.1101/799791 — genetics — Posted on 2019-10-10

2665 The interaction of aging and oxidative stress contributes to pathogenesis in mouse and human Huntington disease neurons

Machiela, E.; Jeloka, R.; Caron, N. S.; Mehta, S.; Schmidt, M. E.; Tom, C. M.; Potluri, N.; Xie, Y.; Mattis, V. B.; Hayden, M. R.; Southwell, A. L.

10.1101/800268 — neuroscience — Posted on 2019-10-10

2666 The role of SRSF3 splicing factor in generating circular RNAs

Naqvi, A. S.; Asnani, M.; Black, K. L.; Hayer, K. E.; Taylor, D.; Thomas-Tikhonenko, A.

10.1101/799700 — molecular biology — Posted on 2019-10-10

2667 Pick Your Poison: Benzalkonium Chloride and Copper Enable Nanocellulose Derivatives to Form Antimicrobial Properties Against a Spectrum of Microorganisms

Winans, M. J.; Gallagher, J. E. G.; Jaczynski, J.; Oporto, G.

10.1101/783076 — microbiology — Posted on 2019-10-10

2668 Site Frequency Spectrum of the Bolthausen-Sznitman coalescent

Kersting, G.; Siri-Jegousse, A.; Wences, A. H.

10.1101/799627 — genetics — Posted on 2019-10-10

2669 ZGRF1 variants implicated in a sensory reflex epilepsy

Roy Choudhury, S.; Satishchandra, P.; Sinha, S.; Anand, A.

10.1101/728188 — genetics — Posted on 2019-10-10

2670 Invasion implies substitution in ecological communities with class-structured populations

Priklopil, T.; Lehmann, L.

10.1101/773580 — evolutionary biology — Posted on 2019-10-10

2671 Inference of Single-Cell Phylogenies from Lineage Tracing Data

Jones, M. G.; Khodaverdian, A.; Quinn, J. J.; Chan, M. M.; Hussmann, J. A.; Wang, R.; Xu, C.; Weissman, J. S.; Yosef, N.

10.1101/800078 — bioinformatics — Posted on 2019-10-10

2672 Fast and precise single-cell data analysis using hierarchical autoencoder

Tran, D.; Nguyen, H.; Tran, B.; Nguyen, T.

10.1101/799817 — bioinformatics — Posted on 2019-10-10

2673 Response of neuroglia to hypoxia-induced oxidative stress using enzymatically crosslinked hydrogels

Zambuto, S. G.; Serrano, J. F.; Vilbert, A.; Lu, Y.; Harley, B.; Pedron, S.

10.1101/799692 — bioengineering — Posted on 2019-10-10

2674 Cognitive control and automatic interference in mind and brain: A unified model of saccadic inhibition and countermanding

Bompas, A.; Campbell, A. E.; Sumner, P.

10.1101/535104 — animal behavior and cognition — Posted on 2019-10-10

2675 Regulatory network analysis of Paneth cell and goblet cell enriched gut organoids using transcriptomics approaches

Treveil, A.; Sudhakar, P.; Matthews, Z. J.; Wrzesinski, T.; Jones, E. J.; Brooks, J.; Olbei, M.; Hautefort, I.; Hall, L. J.; Carding, S. R.; Mayer, U.; Powell, P. P.; Wileman, T.; Di Palma, F.; Haerty, W.; Korcsmaros, T.

10.1101/575845 — systems biology — Posted on 2019-10-10

2676 Multistable and dynamic CRISPRi-based synthetic circuits

Santos-Moreno, J.; Schaerli, Y.

10.1101/756338 — synthetic biology — Posted on 2019-10-10

2677 Contributions of spatial and temporal control of step length symmetry in the transfer of locomotor adaptation from a motorized to a non-motorized split-belt treadmill

Gregory, D. L.; Sup, F. C.; Choi, J. T.

10.1101/699736 — neuroscience — Posted on 2019-10-10

2678 A 5’ UTR G-quadruplex controls localisation and translation of a potassium leak channel mRNA

Maltby, C. J.; Schofield, J. P. R.; Houghton, S. D.; O'Kelly, I.; Vargas-Caballero, M.; Deinhardt, K.; Coldwell, M. J.

10.1101/797423 — molecular biology — Posted on 2019-10-10

2679 Erythropoietic miR-486-5p and miR-451a depletion from whole blood-derived small RNA sequencing libraries

Juzenas, S.; Lindqvist, C. M.; Ito, G.; Dolshanskaya, Y.; Halfvarson, J.; Franke, A.; Hemmrich-Stanisak, G.

10.1101/789891 — molecular biology — Posted on 2019-10-10

2680 North American Birds Require Mitigation and Adaptation to Reduce Vulnerability to Climate Change

Bateman, B. L.; Wildey, C.; Taylor, L.; Wu, J.; LeBaron, G. S.; Langham, G.

10.1101/798652 — ecology — Posted on 2019-10-10

2681 C. elegans LIN-28 controls temporal cell-fate progression by regulating LIN-46 expression via the 5’UTR of lin-46 mRNA

Ilbay, O.; Nelson, C.; Ambros, V.

10.1101/697490 — developmental biology — Posted on 2019-10-10

2682 RRP7A links primary microcephaly to radial glial cells and dysfunction of ribosomal biogenesis, neurogenesis and ciliary resorption

Farooq, M.; Lindbaek, L.; Krogh, N.; Doganli, C.; Keller, C.; Monnich, M.; Sakthivel, S.; Mang, Y.; Fatima, A.; Andersen, V. S.; Hussain, M. S.; Eiberg, H.; Hansen, L.; Kjaer, K. W.; Gopalakrishnan, J.; Pedersen, L. B.; Mollgard, K.; Nielsen, H.; Baig, S. M.; Tommerup, N.; Christensen, S. T.; Larsen, L. A.

10.1101/793877 — neuroscience — Posted on 2019-10-10

2683 Transient arousal modulations are responsible for resting-state functional connectivity changes associated with head motion

Gu, Y.; Han, F.; Sainburg, L. E.; Liu, X.

10.1101/444463 — neuroscience — Posted on 2019-10-10

2684 The solution structure of Dead End bound to AU-rich RNA reveals an unprecedented mode of tandem RRM-RNA recognition required for mRNA regulation

Duszczyk, M. M.; Wischnewski, H.; Kazeeva, T.; Loughlin, F. E.; von Schroetter, C.; Pradere, U.; Hall, J.; Ciaudo, C.; Allain, F. H.- T.

10.1101/572156 — molecular biology — Posted on 2019-10-10

2685 Symbiotic Lactobacillus brevis promote stem cell expansion and tumorigenesis in the Drosophila intestine.

Ferguson, M.; Petkau, K.; Shin, M.; Galenza, A.; Fast, D.; Foley, E.

10.1101/799981 — cell biology — Posted on 2019-10-10

2686 BELLA: Berkeley Efficient Long-Read to Long-Read Aligner and Overlapper

Guidi, G.; Ellis, M.; Rokhsar, D.; Yelick, K.; Buluc, A.

10.1101/464420 — bioinformatics — Posted on 2019-10-10

2687 BELLA: Berkeley Efficient Long-Read to Long-Read Aligner and Overlapper

Guidi, G.; Ellis, M.; Rokhsar, D.; Yelick, K.; Buluc, A.

10.1101/464420 — bioinformatics — Posted on 2019-10-10

2688 Network organization of antibody interactions in sequence and structure space: the RADARS model

Prechl, J.

10.1101/438804 — systems biology — Posted on 2019-10-10

2689 Random Parametric Perturbations of Gene Regulatory Circuit Uncover State Transitions in Cell Cycle

Katebi, A.; Kohar, V.; Lu, M.

10.1101/799965 — systems biology — Posted on 2019-10-10

2690 Transcriptomic signatures predict regulators of drug synergy and clinical regimen efficacy against Tuberculosis

Ma, S.; Jaipalli, S.; Larkins-Ford, J.; Lohmiller, J.; Aldridge, B.; Sherman, D. R.; Chandrasekaran, S.

10.1101/800334 — systems biology — Posted on 2019-10-10

2691 Modeling a gene regulatory network of EMT hybrid states for mouse embryonic skin cells

Ramirez, D.; Kohar, V.; Katebi, A.; Lu, M.

10.1101/799908 — systems biology — Posted on 2019-10-10

2692 Joint Universal Modular Plasmids (JUMP): A flexible and comprehensive platform for synthetic biology

Valenzuela-Ortega, M.; French, C.

10.1101/799585 — synthetic biology — Posted on 2019-10-10

2693 An anti-diuretic hormone receptor in the human disease vector, Aedes aegypti: identification, expression analysis and functional deorphanization

Sajadi, F.; Uyuklu, A.; Paputsis, C.; Lajevardi, A.; Wahedi, A.; Ber, L. T.; Matei, A.; Paluzzi, J.-P. V.

10.1101/799833 — physiology — Posted on 2019-10-10

2694 A dual role for shape skeletons in human vision: perceptual organization and object recognition

Ayzenberg, V.; Kamps, F. S.; Dilks, D. D.; Lourenco, S. F.

10.1101/799650 — neuroscience — Posted on 2019-10-10

2695 Persons post-stroke restore step length symmetry by walking asymmetrically

Padmanabhan, P.; Rao, K. S.; Gulhar, S.; Cherry-Allen, K. M.; Leech, K. A.; Roemmich, R. T.

10.1101/799775 — neuroscience — Posted on 2019-10-10

2696 Modeling the Hemodynamic Response Function for Prediction Errors in the Ventral Striatum

Bravo-Hermsdorff, G.; Niv, Y.

10.1101/800136 — neuroscience — Posted on 2019-10-10

2697 Estrogen Receptor α Regulates Ethanol Excitation of Ventral Tegmental Area Neurons and Binge Drinking in Female Mice

Vandegrift, B. J.; Hildebrand, E. R.; Satta, R.; Tai, R.; He, D.; You, C.; Coles, C.; Chen, H.; Brodie, M. S.; Lasek, A. W.

10.1101/800052 — neuroscience — Posted on 2019-10-10

2698 Conscious perception of flickering stimuli in binocular rivalry and continuous flash suppression is not affected by tACS-induced SSR modulation

Schauer, G.; Ogawa, C. Y.; Tsuchiya, N.; Bartels, A.

10.1101/788950 — neuroscience — Posted on 2019-10-10

2699 Patterned Neuronal Activities Dictate Cell Type-specific Axon Regeneration

Ruppell, K. T.; Wang, F.; Li, F.; Shang, Y.; Gong, J.; Guttipatti, P.; Song, Y.; Xiang, Y.

10.1101/799635 — neuroscience — Posted on 2019-10-10

2700 Ultrastructure of light-activated axons following optogenetic stimulation to produce late-phase long-term potentiation

Kuwajima, M.; Ostrovskaya, O. I.; Cao, G.; Weisberg, S. A.; Harris, K. M.; Zemelman, B. V.

10.1101/799890 — neuroscience — Posted on 2019-10-10

2701 Functional brain network reconfiguration during learning in a dynamic environment

Kao, C.-H.; Khambhati, A. N.; Bassett, D. S.; Nassar, M. R.; McGuire, J. T.; Gold, J. I.; Kable, J. W.

10.1101/800284 — neuroscience — Posted on 2019-10-10

2702 Bootstrapping promotes the RSFC-behavior associations: an application of individual cognitive traits prediction

Wei, L.; Jing, B.; Li, H.

10.1101/800243 — neuroscience — Posted on 2019-10-10

2703 A large inner membrane pore defines the ESX translocon

Poweleit, N.; Czudnochowski, N.; Nakagawa, R.; Murphy, K. C.; Sassetti, C. M.; Rosenberg, O.

10.1101/800169 — microbiology — Posted on 2019-10-10

2704 Comparative therapeutic potential of ALX-0171 and palivizumab against RSV clinical isolate infection of well-differentiated primary pediatric bronchial epithelial cell cultures

Broadbent, L.; Guo Parke, H.; Ferguson, L. J.; Miller, A.; Shields, M. D.; Detalle, L.; Power, U. F.

10.1101/800326 — microbiology — Posted on 2019-10-10

2705 Large X-linked palindromes undergo arm-to-arm gene conversion across Mus lineages

Swanepoel, C. M.; Gerlinger, E. R.; Mueller, J. L.

10.1101/800185 — genetics — Posted on 2019-10-10

2706 Latent information about optimal behaviour forces evolution of noisy signal transduction

Tjalma, A. J.; Bruggeman, F. J.

10.1101/800292 — evolutionary biology — Posted on 2019-10-10

2707 Microstructures amplify seemingly honest signals in carotenoid-colored tanagers

McCoy, D. E.; Shultz, A. J.; Vidoudez, C.; van der Heide, E.; Trauger, S. A.; Haig, D.

10.1101/799783 — evolutionary biology — Posted on 2019-10-10

2708 Major changes in plastid protein import and the origin of the Chloroplastida

Knopp, M. R.; Garg, S. G.; Handrich, M.; Gould, S. B.

10.1101/799577 — evolutionary biology — Posted on 2019-10-10

2709 Risk to North American Birds from Climate Change-Related Threats

Bateman, B. L.; Taylor, L.; Wilsey, C.; Wu, J.; LeBaron, G. S.; Langham, G.

10.1101/798694 — ecology — Posted on 2019-10-10

2710 Pan-cancer predictions of MEK inhibitor sensitivity are partially driven by between-tissue differences

Lloyd, J. P.; Soellner, M.; Merajver, S. D.; Li, J. Z.

10.1101/800193 — cancer biology — Posted on 2019-10-10

2711 Trans-NanoSim characterizes and simulates nanopore RNA-seq data

Hafezqorani, S.; Yang, C.; Nip, K. M.; Warren, R. L.; Birol, I.

10.1101/800110 — bioinformatics — Posted on 2019-10-10

2712 Shared transcriptional responses to con- and heterospecific behavioral antagonists in a wild songbird

Louder, M. I. M.; Lafayette, M. J.; Louder, A. N. A.; Uy, F. M. K.; Balakrishnan, C.; Hauber, M. E.

10.1101/795757 — animal behavior and cognition — Posted on 2019-10-10

2713 Somatic mutations and genome stability maintenance in clonal coral colonies

Lopez, E. H.; Palumbi, S. R.

10.1101/799643 — evolutionary biology — Posted on 2019-10-10

Baden, A. L.; Webster, T. H.; Bradley, B. J.

10.1101/799825 — animal behavior and cognition — Posted on 2019-10-10

2715 Palmitate induces apoptotic cell death and inflammasome activation in human placental macrophages

Rogers, L.; Serezani, C. H.; Eastman, A.; Hasty, A.; Englund-Ogge, L.; Jacobsson, B.; Vickers, K.; Aronoff, D. M.

10.1101/799718 — immunology — Posted on 2019-10-10

2716 Vaccine-specific immune responses against Mycobacterium ulcerans infection in a low-dose murine challenge model

Mangas, K. M.; Buultjens, A. H.; Porter, J. L.; Baines, S. L.; Marion, E.; Marsollier, L.; Tobias, N. J.; Pidot, S. J.; Quinn, K. M.; Price, D. J.; Kedzierska, K.; Zeng, W.; Jackson, D. C.; Chua, B. Y.; Stinear, T. P.

10.1101/800250 — immunology — Posted on 2019-10-10

2717 Early Polycomb-target deregulations in Hutchinson-Gilford Progeria Syndrome revealed by heterochromatin analysis

Sebestyen, E.; Marullo, F.; Lucini, F.; Bianchi, A.; Petrini, C.; Valsoni, S.; Olivieri, I.; Antonelli, L.; Gregoretti, F.; Oliva, G.; Ferrari, F.; Lanzuolo, C.

10.1101/799668 — molecular biology — Posted on 2019-10-10

2718 Mechanistic insights into NAD synthase NMNAT chaperoning phosphorylated Tau from pathological aggregation

Li, D.; Ma, X.; Lu, J.; Zhu, Y.; Xie, J.; Li, C.; Shin, A.; Qiang, J.; Liu, J.; Dou, S.; Xiao, Y.; Wang, C.; Jia, C.; Long, H.; Fang, Y.; Jiang, L.; Zhang, Y.; Zhang, S.; Zhai, R. G.; Liu, C.

10.1101/800565 — biochemistry — Posted on 2019-10-10

2719 Temporal analyses of CRISPR-directed gene editing on NRF2, a clinically relevant human gene involved in chemoresistance

Banas, K.; Rivera-Torres, N.; Bialk, P.; Yoo, B.-C.; Kmiec, E. B.

10.1101/799676 — molecular biology — Posted on 2019-10-10

2720 The effects of modified sialic acids on mucus and erythrocytes on influenza A virus HA and NA functions

Barnard, K. N.; Alford-Lawrence, B. K.; Buchholz, D. W.; Wasik, B. R.; LaClair, J. R.; Yu, H.; Honce, R.; Ruhl, S.; Pajic, P.; Daugherity, E. K.; Chen, X.; Schultz-Cherry, S.; Aguilar, H. C.; Varki, A.; Parrish, C. R.

10.1101/800300 — microbiology — Posted on 2019-10-10

2721 Fatty acid oxidation impairs macrophage effector functions that control Mycobacterium tuberculosis

Chandra, P.; He, L.; Zimmerman, M.; Yang, G.; Koster, S.; Ouimet, M.; Wang, H.; Moore, K. J.; Dartois, V.; Schilling, J. D.; Philips, J. A.

10.1101/799619 — microbiology — Posted on 2019-10-10

2722 Predicting 3D genome folding from DNA sequence

Fudenberg, G.; Kelley, D. R.; Pollard, K. S.

10.1101/800060 — genomics — Posted on 2019-10-10

2723 Litmus-Body: a Molecularly Targeted Sensor for Cell-Surface pH Measurements

Goudge, M. C.; Kuo, J. C.-H.; Metzloff, A. E.; Huang, L.-T.; Colville, M. J.; Zipfel, W. R.; Paszek, M. J.

10.1101/800003 — cell biology — Posted on 2019-10-10

2724 Improved prediction of MHC II antigen presentation throughintegration and motif deconvolution of mass spectrometryMHC eluted ligand data

Reynisson, B.; Barra, C.; Peters, B.; Nielsen, M.

10.1101/799882 — bioinformatics — Posted on 2019-10-10

2725 An endogenous glucocorticoid-cytokine signaling circuit promotes CD8+ T cell dysfunction in the tumor microenvironment

Acharya, N.; Madi, A.; Zhang, H.; Klapholz, M.; Christian, E.; Dixon, K. O.; Fell, G.; Tooley, K.; Mangani, D.; Xia, J.; Singer, M.; Neuberg, D.; Rozenblatt-Rosen, O.; Regev, A.; Kuchroo, V. K.; Anderson, A. C.

10.1101/799759 — immunology — Posted on 2019-10-10

2726 First fossil skull of an anteater (Vermilingua, Myrmecophagidae) from northern South America, a taxonomic reassessment of Neotamandua and a discussion of the myrmecophagid diversification

Jimenez-Lara, K.; Gonzalez, J.

10.1101/793307 — paleontology — Posted on 2019-10-10

2727 Measuring anesthetic resistance in Drosophila by VAAPR

Petersen, E. N.; Clowes, K. R.; Hansen, S. B.

10.1101/797209 — pharmacology and toxicology — Posted on 2019-10-10

2728 Proteome and phosphoproteome changes associated with prognosis in acute myeloid leukemia

Hernandez-Valladares, M. d. C.; Aasebo, E.; Berven, F. S.; Bartaula-Brevik, S.; Stokowy, T.; Hovland, R.; Vaudel, M.; Doskeland, S. O.; McCormack, E.; Batth, T. S.; Olsen, J. V.; Bruserud, O.; Selheim, F.

10.1101/796011 — cancer biology — Posted on 2019-10-10

2729 Predicting cellular position in the Drosophila embryo from Single-Cell Transcriptomics data

10.1101/796029 — systems biology — Posted on 2019-10-10

2730 Phenotypic differences in reversible attachment behavior reveal distinct P. aeruginosa surface colonization strategies

Lee, C. K.-m.; Vachier, J.; de Anda, J.; zhao, k.; Baker, A.; Bennett, R. R.; Armbruster, C. R.; Lewis, K. A.; Tarnopol, R. L.; Lomba, C. J.; Hogan, D. A.; Parsek, M. R.; O'Toole, G. A.; Golestanian, R.; Wong, G. C. L.

10.1101/798843 — microbiology — Posted on 2019-10-10

2731 Bacterial cell cycle control by citrate synthase independent of enzymatic activity

Berge, M.; Pezzatti, J.; Gonzalez-Ruiz, V.; Theraulaz, L.; Rudaz, S.; Viollier, P. H.

10.1101/799742 — cell biology — Posted on 2019-10-10

2732 Systems-level physiology of the human red blood cell is computed from metabolic and macromolecular mechanisms

Yurkovich, J. T.; Yang, L.; Palsson, B. O.

10.1101/797258 — systems biology — Posted on 2019-10-10

2733 An Optimization framework for Nonspiking Neuronal Networks and Aided Discovery of a Model for the Elementary Motion Detector

Banerjee, A.

10.1101/666149 — neuroscience — Posted on 2019-10-10

2734 Single chromosome gains can function as metastasis suppressors and metastasis promoters

Vasudevan, A.; Baruah, P. S.; Smith, J. C.; Wang, Z.; Sayles, N. M.; Andrews, P.; Kendall, J.; Leu, J.; Chunduri, N. K.; Levy, D.; Wigler, M.; Storchova, Z.; Sheltzer, J. M.

10.1101/590547 — cancer biology — Posted on 2019-10-10

2735 Alpha oscillations in the human brain implement distractor suppression independent of target selection

Woestmann, M.; Alavash, M.; Obleser, J.

10.1101/721019 — neuroscience — Posted on 2019-10-10

2736 Altered EEG resting-state large-scale brain network dynamics in euthymic bipolar disorder patients

Damborska, A.; Piguet, C.; Aubry, J.-M.; Dayer, A.; Michel, C.; Berchio, C.

10.1101/668004 — neuroscience — Posted on 2019-10-10

2737 Access to unexplored regions of sequence space in directed enzyme evolution via insertion/deletion mutagenesis

Emond, S.; Petek, M.; Kay, E.; Heames, B.; Devenish, S.; Tokuriki, N.; Hollfelder, F.

10.1101/790014 — biochemistry — Posted on 2019-10-10

2738 Rotavirus re-programs multiple IFN receptors and restricts their intestinal antiviral and inflammatory functions

Sen, A.; Namsa, N.; Feng, N.; Greenberg, H. B.

10.1101/702837 — immunology — Posted on 2019-10-10

2739 The inner junction complex of the cilia is an interaction hub that involves tubulin post-translational modifications

Khalifa, A. A. Z.; Ichikawa, M.; Dai, D.; Black, C.; Peri, K.; McAlear, T. S.; Kubo, S.; Veyron, S.; Yang, S. K.; Vargas, J.; Trempe, J.-F.; Bechstedt, S.; Bui, K. H.

10.1101/774695 — biophysics — Posted on 2019-10-10

2740 Individual Learning Phenotypes Drive Collective Cognition

Cook, C. N.; Lemanski, N. J.; Mosqueiro, T.; Ozturk, C.; Gadau, J.; Pinter-Wollman, N.; Smith, B. H.

10.1101/761676 — animal behavior and cognition — Posted on 2019-10-10

2741 Fibroblast-specific genome-scale modelling predicts an imbalance in amino acid metabolism in Refsum disease

Wegrzyn, A. B.; Herzog, K.; Gerding, A.; Kwiatkowski, M.; Wolters, J. C.; Dolga, A. M.; van Lint, A. E. M.; Wanders, R. J. A.; Waterham, H. R.; Bakker, B. M.

10.1101/776575 — systems biology — Posted on 2019-10-10

2742 A roadblock-and-kill model explains the dynamical response to the DNA-targeting antibiotic ciprofloxacin

Ojkic, N.; Lilia, E.; Direito, S.; Dawson, A.; Allen, R. J.; Waclaw, B.

10.1101/791145 — systems biology — Posted on 2019-10-10

2743 Human iPSC modeling elucidates mutation-specific responses to gene therapy in a genotypically diverse dominant maculopathy

Sinha, D.; Steyer, B. G.; Shahi, P. K.; Mueller, K.; Valiauga, R.; Edwards, K. L.; Bacig, C.; Steltzer, S. S.; Srinivasan, S.; Abdeen, A.; Cory, E.; Periyasamy, V.; Siahpirani, A. F.; Roy, S.; Pattnaik, B. R.; Saha, K.; Gamm, D. M.

10.1101/796581 — genetics — Posted on 2019-10-10

2744 Invasion implies substitution in ecological communities with class-structured populations

Priklopil, T.; Lehmann, L.

10.1101/773580 — evolutionary biology — Posted on 2019-10-10

2745 Dynamically Evolving Cell Sizes During Early Development Enable Normal Gastrulation Movements In Zebrafish Embryos

Menon, T.; Borbora, A. S.; Kumar, R.; Nair, S.

10.1101/481325 — developmental biology — Posted on 2019-10-10

2746 Detecting Zero-Inflated Genes in Single-Cell Transcriptomics Data

Clivio, O.; Lopez, R.; Regier, J.; Gayoso, A.; Jordan, M. I.; Yosef, N.

10.1101/794875 — bioinformatics — Posted on 2019-10-10

2747 Structured event memory: a neuro-symbolic model of event cognition

Franklin, N.; Norman, K. A.; Ranganath, C.; Zacks, J. M.; Gershman, S. J.

10.1101/541607 — neuroscience — Posted on 2019-10-10

2748 Sociality and Interaction Envelope Organize Visual Action Representations

Tarhan, L.; Konkle, T.

10.1101/618272 — neuroscience — Posted on 2019-10-10

2749 Estrogen Drives Melanocortin Neurons To Reduce Sedentary Behavior

Krause, W. C.; Rodriguez, R.; Gegenhuber, J. B.; Matharu, N.; Rodriguez, A. N.; Padilla, A.; Herber, C. B.; Correa, S. M.; Ahituv, N. M.; Tollkuhn, J.; Ingraham, H. A.

10.1101/794792 — neuroscience — Posted on 2019-10-10

2750 Mitochondrial volume fraction and translation speed impact mRNA localization and production of nuclear-encoded mitochondrial proteins

Tsuboi, T.; Viana, M. P.; Xu, F.; Yu, J.; Chanchani, R.; Arceo, X. G.; Tutucci, E.; Choi, J.; Chen, Y. S.; Singer, R. H.; Rafelski, S. M.; Zid, B. M.

10.1101/529289 — cell biology — Posted on 2019-10-10

2751 Allosteric Motions of the CRISPR-Cas9 HNH Nuclease Probed by NMR and Molecular Dynamics

East, K. W.; Newton, J. C.; Morzan, U. N.; Acharya, A.; Skeens, E.; Jogl, G.; Batista, V. S.; Palermo, G.; Lisi, G. P.

10.1101/660613 — biophysics — Posted on 2019-10-10

2752 Revealing the molecular origins of fibrin’s elastomeric properties by in situ X-ray scattering

Vos, B. E.; Martinez-Torres, C.; Burla, F.; Weisel, J. W.; Koendernik, G. H.

10.1101/797464 — biophysics — Posted on 2019-10-10

2753 Genome-wide associations reveal human-mouse genetic convergence and modifiers of myogenesis, CPNE1 and STC2

Hernandez Cordero, A. I.; Gonzales, N. M.; Parker, C. C.; Sokoloff, G.; Vandenbergh, D. J.; Cheng, R.; Abney, M.; Skol, A.; Douglas, A.; Palmer, A. A.; Gregory, J. S.; Lionikas, A.

10.1101/370312 — genetics — Posted on 2019-10-10

2754 DNA Barcoding of fogged caterpillars in Peru: A novel approach for unveiling host-plant relationships of tropical moths (Insecta, Lepidoptera)

Hausmann, A.; Diller, J.; Moriniere, J.; Höcherl, A.; Floren, A.; Haszprunar, G.

10.1101/799221 — zoology — Posted on 2019-10-09

2755 Studying global processing in autism and attention-deficit/hyperactivity disorder with gaze movements: The example of a copying task

Seernani, D.; Ioannou, C.; Damania, K.; Spindler, K.; Hill, H.; Foulsham, T.; Smyrnis, N.; Bender, S.; Fleischhaker, C.; Biscaldi, M.; Ebner-Priemer, U.; Klein, C.

10.1101/799205 — neuroscience — Posted on 2019-10-09

2756 scPADGRN: A preconditioned ADMM approach for reconstructing dynamic gene regulatory network using single-cell RNA sequencing data

Zheng, X.; Huang, Y.; Zou, X.

10.1101/799189 — bioinformatics — Posted on 2019-10-09

2757 Asymmetric gait patterns alter the reactive control of intersegmental coordination patterns during walking

Finley, J.; Liu, C.

10.1101/799213 — neuroscience — Posted on 2019-10-09

2758 The relative contributions of infectious and mitotic spread to HTLV-1 persistence

Laydon, D. J.; Sunkara, V.; Boelen, L.; Bangham, C.; Asquith, B.

10.1101/799197 — immunology — Posted on 2019-10-09

2759 Transcriptomics at maize embryo/endosperm interfaces identify a novel transcriptionally distinct endosperm sub-domain adjacent to the embryo scutellum (EAS)

Doll, N. M.; Just, J.; Brunaud, V.; Caius, J.; Grimault, A.; Depege-Fargeix, N.; Esteban, E.; Pasha, A.; Provart, N. J.; Ingram, G. C.; Rogowsky, P. C.; Widiez, T.

10.1101/799338 — plant biology — Posted on 2019-10-09

2760 Relaxed constraint and functional divergence of the progesterone receptor (PGR) in the human stem-lineage

Marinic, M.; Lynch, V. J.

10.1101/799569 — evolutionary biology — Posted on 2019-10-09

2761 CIC is a Critical Regulator of Neuronal Differentiation

Hwang, I.; Pan, H.; Yao, J.; Elemento, O.; Zheng, H.; Paik, J.

10.1101/799536 — cell biology — Posted on 2019-10-09

2762 Robust blind spectral unmixing for fluorescence microscopy using unsupervised learning

McRae, T. D.; Oleksyn, D.; Miller, J.; Gao, Y.-R.

10.1101/797993 — bioinformatics — Posted on 2019-10-09

2763 All-optical electrophysiology refines populations of in silico human iPS-CMs for drug evaluation

Paci, M.; Passini, E.; Klimas, A.; Severi, S.; Hyttinen, J.; Rodriguez, B.; Entcheva, E.

10.1101/799478 — pharmacology and toxicology — Posted on 2019-10-09

2764 Excessive drinking and checking in the rat model of Schedule-Induced Polydipsia reveal impaired bi-directional plasticity at BNST GABA synapses

Angelis, S.; Gardner Gregory, J.; Hawken, E. R.; Dumont, E. C.

10.1101/799452 — neuroscience — Posted on 2019-10-09

2765 Salmonella Enhances Osteogenic Differentiation in Adipose-Derived Mesenchymal Stem Cells

Foutouhi, S. H.; Mohamad-Fauzi, N.; Storey, D. B.; Foutouhi, A. A.; Kong, N.; Kol, A.; Borjesson, D.; Desai, P.; Shah, J.; Murray, J. D.; Weimer, B. C.

10.1101/795617 — microbiology — Posted on 2019-10-09

2766 Microbial Signalling of Rhizobium Bacteria as a Method for Cereal Crop Germination Enhancement

Judge, C.; Hickey, E.

10.1101/788125 — plant biology — Posted on 2019-10-09

2767 Priming enables a NEK7-independent route of NLRP3 activation

Schmacke, N. A.; Gaidt, M. M.; Szymanska, I.; O'Duill, F.; Stafford, C. A.; Chauhan, D.; Froehlich, A. L.; Nagl, D.; Pinci, F.; Schmid-Burgk, J. L.; Hornung, V.

10.1101/799320 — immunology — Posted on 2019-10-09

2768 Evolution of protective human antibodies against Plasmodium falciparum circumsporozoite protein repeat motifs

Murugan, R.; Scally, S. W.; Costa, G.; Mustafa, G.; Thai, E.; Decker, T.; Bosch, A.; Prieto, K.; Levashina, E. A.; Julien, J.-P.; Wardemann, H.

10.1101/798769 — immunology — Posted on 2019-10-09

2769 Effects of mutations in pigeon Mc1r implicate an expanded plumage color patterning regulatory network

Krishnan, S.; Cryberg, R. L.

10.1101/792945 — genetics — Posted on 2019-10-09

2770 Fetal liver hepcidin supports acquisition of iron stores in utero

Kammerer, L.; Mohammad, G.; Wolna, M.; Robbins, P.; Lakhal-Littleton, S.

10.1101/799304 — developmental biology — Posted on 2019-10-09

2771 Disinhibition-assisted LTP in the prefrontal-amygdala pathway via suppression of somatostatin-expressing interneurons

Ito, W.; Fisco, B.; Morozov, A.

10.1101/799346 — neuroscience — Posted on 2019-10-09

2772 Shigella sonnei O-antigen inhibits internalisation, vacuole escape and inflammasome activation

Watson, J.; Sanchez-Garrido, J.; Goddard, P.; Torraca, V.; Mostowy, S.; Shenoy, A. R.; Clements, A.

10.1101/799379 — microbiology — Posted on 2019-10-09

2773 Genome duplication in Leishmania major relies on DNA replication outside S phase

Damasceno, J.; Marques, C.; Beraldi, D.; Crouch, K.; Lapsley, C.; Obonaga, R.; Tosi, L.; McCulloch, R.

10.1101/799429 — microbiology — Posted on 2019-10-09

2774 The biogeography and biodiversity of endophytes--how far have we come and where do we go from here?

Harrison, J. G.; Griffin, E. A.

10.1101/793471 — ecology — Posted on 2019-10-09

2775 Asamataxis: A cooperative relayed migration in response to subsurface inhomogeneity leads to long-range self-patterning of cells

Khadpekar, A.; Mistry, K.; Dwivedi, N.; Paspunurwar, A.; Tandaiya, P.; Majumder, A.

10.1101/799437 — biophysics — Posted on 2019-10-09

2776 Genetic encoding of targeted MRI contrast agents for in vivo tumor imaging

Schuerle, S.; Furubayashi, M.; Soleimany, A. P.; Gwisai, T.; Huang, W.; Voigt, C.; Bhatia, S. N.

10.1101/799411 — synthetic biology — Posted on 2019-10-09

2777 Recurrent neural network models of multi-area computation underlying decision-making

Kleinman, M.; Chandrasekaran, C.; Kao, J. C.

10.1101/798553 — neuroscience — Posted on 2019-10-09

2778 Perceptual spatial suppression and sensitivity for motion are weakened in schizophrenia

Linares, D.; Amoretti, S.; Marin-Campos, R.; Sousa, A.; Prades, L.; Dalmau, J.; Bernardo, M.; Compte, A.

10.1101/799395 — neuroscience — Posted on 2019-10-09

2779 Age-linked heterogeneity among oligodendrocyte precursor cells in the cerebral cortex of mice and human

Bribian, A.; Medina-Rodriguez, E.; Josa-Prado, F.; Garcia-Alvarez, I.; Machin-Diaz, I.; Murcia-Belmonte, V.; Vega-Zelaya, L.; Pastor, J.; Garrido, L.; de Castro, F.

10.1101/799544 — neuroscience — Posted on 2019-10-09

2780 A Microsporidian blocks Plasmodium falciparum transmission in Anopheles arabiensis mosquitoes

Herren, J. K.; Mbaisi, L.; Mararo, E.; Oundo, J. W.; Makhulu, E.; Butungi, H.; Mancini, M. V.; Mobegi, V. A.; Jabara, J.; Sinkins, S. P.

10.1101/799445 — microbiology — Posted on 2019-10-09

2781 Gene-environment interactions using a Bayesian whole genome regression model

Kerin, M.; Marchini, J.

10.1101/797829 — genetics — Posted on 2019-10-09

2782 t-SNE transformation: a normalization method for local features of single-cell RNA-seq data

An, C.; Bacardit, J.; Zhang, N.; Wu, B.

10.1101/799288 — bioinformatics — Posted on 2019-10-09

2783 Potent CRISPR-Cas9 inhibitors from Staphylococcus genomes

Watters, K. E.; Shivram, H.; Fellmann, C.; Lew, R. J.; McMahon, B.; Doudna, J. A.

10.1101/799403 — biochemistry — Posted on 2019-10-09

2784 The secretome of a parasite is sufficient to alter its host’s behaviour

Berger, C. S.; Aubin-Horth, N.

10.1101/799551 — animal behavior and cognition — Posted on 2019-10-09

2785 High-resolution micro-epidemiology of parasite spatial and temporal dynamics in a high malaria transmission setting in Kenya

Nelson, C. S.; Sumner, K. M.; Freedman, E.; Saelens, J. W.; Obala, A. A.; Mangeni, J. N.; Taylor, S. M.; O'Meara, W. P.

10.1101/799312 — microbiology — Posted on 2019-10-09

2786 A multilayer network model of neuron-astrocyte populations in vitro reveals mGluR5 inhibition is protective following traumatic injury

Schroeder, M. E.; Bassett, D. S.; Meaney, D. F.

10.1101/798611 — neuroscience — Posted on 2019-10-09

2787 Specialization of the chromatin remodeler RSC to mobilize partially-unwrapped nucleosomes

Schlichter, A.; Kasten, M. M.; Parnell, T. J.; Cairns, B. R.

10.1101/799361 — molecular biology — Posted on 2019-10-09

2788 Universal assay for measuring vertebrate telomeres by real-time quantitative PCR

Hudon, S. F.; Palencia Hurtado, E.; Beck, J. D.; Burden, S. J.; Bendixsen, D. P.; Callery, K. R.; Forbey, J. S.; Waits, L. P.; Miller, R. A.; Nielsen, O. K.; Heath, J. A.; Hayden, E. J.

10.1101/797068 — molecular biology — Posted on 2019-10-09

2789 HSP110 dependent HSP70 disaggregation machinery mediates prion-like propagation of amyloidogenic proteins in metazoa

Tittelmeier, J.; Sandhof, C. A.; Ries, H. M.; Druffel-Augustin, S.; Mogk, A.; Bukau, B.; Nussbaum-Krammer, C.

10.1101/795435 — cell biology — Posted on 2019-10-09

2790 Deep learning of virus infections reveals mechanics of lytic cells

Andriasyan, V.; Yakimovich, A.; Georgi, F.; Petkidis, A.; Witte, R.; Puntener, D.; Greber, U. F.

10.1101/798074 — cell biology — Posted on 2019-10-09

2791 What do ossification sequences tell us about the origin of extant amphibians?

Laurin, M.; Lapauze, O.; Marjanovic, D.

10.1101/352609 — paleontology — Posted on 2019-10-09

2792 Systematic revision and redefinition of the genus Scirrotherium Edmund & Theodor, 1997 (Cingulata, Pampatheriidae): Implications for the origin of pampatheriids and the evolution of the South American lineage including Holmesina

Jimenez-Lara, K.

10.1101/719153 — paleontology — Posted on 2019-10-09

2793 Stimulation of Gαq Promotes Stress Granule Formation

Qifti, A.; Jackson, L.; Singla, A.; Garwain, O.; Scarlata, S.

10.1101/521369 — biochemistry — Posted on 2019-10-09

2794 Does extrinsic mortality accelerate the pace of life? A bare-bones approach

Andre, J.-B.; Rousset, F.

10.1101/777698 — evolutionary biology — Posted on 2019-10-09

2795 A signaling axis involving CNOT3, Aurora B and ERK promotes mesendodermal differentiation of ES cells in response to FGF2 and BMP4

Sarkar, M.; Martufi, M.; Roman-Trufero, M.; Wang, Y.-F.; Whilding, C.; Dormann, D.; Sabbattini, P.; Dillon, N.

10.1101/756932 — developmental biology — Posted on 2019-10-09

2796 Metabolic remodeling by TIGAR overexpression is a therapeutic target in esophageal squamous-cell carcinoma

Chu, J.; Niu, X.; Chang, J.; Shao, M.; Peng, L.; Xi, Y.; Lin, A.; Wang, C.; Cui, Q.; Luo, Y.; Fan, W.; Chen, Y.; Sun, Y.; Guo, W.; Tan, W.; Lin, D.; Wu, C.

10.1101/789271 — cancer biology — Posted on 2019-10-09

2797 Insights from a survey-based analysis of the academic job market

Fernandes, J. D.; Sarabipour, S.; Smith, C. T.; Niemi, N. M.; Jadavji, N. M.; Kozik, A. J.; Holehouse, A. S.; Pejaver, V.; Symmons, O.; Bisson Filho, A. W.; Haage, A.

10.1101/796466 — scientific communication and education — Posted on 2019-10-09

2798 High molecular weight DNA isolation method from diverse plant species for use with Oxford Nanopore sequencing

Vaillancourt, B.; Buell, C. R.

10.1101/783159 — plant biology — Posted on 2019-10-09

2799 Presynaptic GABAergic receptors modulate inhibitory synaptic feedback in the avian cochlear nucleus angularis

Eisenbach, S. L.; Soueidan, S. E.; MacLeod, K. M.

10.1101/619783 — neuroscience — Posted on 2019-10-09

2800 Reliability-Based Voxel Selection

Tarhan, L.; Konkle, T.

10.1101/703603 — neuroscience — Posted on 2019-10-09

2801 Phase-based coordination of hippocampal and neocortical oscillations during human sleep

Cox, R.; Ruber, T.; Staresina, B.; Fell, J.

10.1101/745745 — neuroscience — Posted on 2019-10-09

2802 Correlation between Retinal Ganglion Cell Loss and Nerve Crush Force-Impulse Established with an Instrumented Tweezers in Mice

Liu, X.; Feng, L.; Shinde, I.; Cole, J. D.; Troy, J. B.; Saggere, L.

10.1101/687616 — neuroscience — Posted on 2019-10-09

2803 Gq-mediated calcium dynamics and membrane tension modulate neurite plasticity

Pearce, K. M.; Bell, M.; Linthicum, W.; Wen, Q.; Srinivasan, J.; Rangamani, P.; Scarlata, S.

10.1101/661975 — biophysics — Posted on 2019-10-09

2804 A decrease in transcription capacity limits growth rate upon translation inhibition

Zhang, Q.; Brambilla, E.; Li, R.; Shi, H.; Cosentino Lagomarsino, M.; Sclavi, B.

10.1101/599183 — microbiology — Posted on 2019-10-09

2805 Polymer-like model to study the dynamics of dynamin filaments on deformable membrane tubes

Noel, J. K.; Noe, F.; Daumke, O.; Mikhailov, A.

10.1101/686873 — biophysics — Posted on 2019-10-09

2806 A systematic evaluation of interneuron morphologyrepresentations for cell type discrimination

Laturnus, S.; Kobak, D.; Berens, P.

10.1101/591370 — neuroscience — Posted on 2019-10-09

2807 Macrophages utilize a bet-hedging strategy for antimicrobial activity in phagolysosomal acidification

Dragotakes, Q.; Stouffer, K.; Fu, M. S.; Sella, Y.; Youn, C.; Yoon, I.; Leon-Rodriguez, C. M.; Freij, J. B.; Bergman, A.; Casadevall, A.

10.1101/470617 — microbiology — Posted on 2019-10-09

2808 Sub-optimality of the early visual system explained through biologically plausible plasticity

Chauhan, T.; Cottereau, B. R.; Masquelier, T.

10.1101/799155 — systems biology — Posted on 2019-10-09

2809 Impact of small RNAs in retrograde signalling pathways in Arabidopsis thaliana

Habermann, K.; Frank, W.; Arif, A. M.; Tiwari, B.; Krantz, M.; Adler, S. O.; Klipp, E.

10.1101/798900 — plant biology — Posted on 2019-10-09

2810 Whole brain delivery of an instability-prone Mecp2 transgene improves behavioral and molecular pathological defects in mouse models of Rett syndrome

Luoni, M.; Giannelli, S. G.; Indrigo, M.; Niro, A.; Massimino, L.; Iannielli, A.; Passeri, L.; Russo, F.; Morabito, G.; Calamita, P.; Gregori, S.; Deverman, B. E.; Broccoli, V.

10.1101/798793 — neuroscience — Posted on 2019-10-09

2811 New Targeted Approaches for Epigenetic Age Predictions

Han, Y.; Franzen, J.; Stiehl, T.; Gobs, M.; Kuo, C.-C.; Nikolic, M.; Hapala, J.; Koop, B. E.; Strathmann, K.; Ritz-Timme, S.; Wagner, W.

10.1101/799031 — genetics — Posted on 2019-10-09

2812 Extracting Super-resolution Structures inside a Single Molecule or Overlapped Molecules from One Blurred Image

Sheffield, E. Y.

10.1101/798934 — biophysics — Posted on 2019-10-09

2813 The Future of OA: A large-scale analysis projecting Open Access publication and readership

Piwowar, H.; Priem, J.; Orr, R.

10.1101/795310 — scientific communication and education — Posted on 2019-10-09

2814 MARSHAL, a novel tool for virtual phenotyping of maize root system hydraulic architectures

Meunier, F.; Heymans, A.; Draye, X.; Couvreur, V.; Lobet, G.; Javaux, M.

10.1101/798975 — plant biology — Posted on 2019-10-09

2815 Remote control of neural function by X-ray-induced scintillation

Matsubara, T.; Yanagida, T.; Kawaguchi, N.; Nakano, T.; Yoshimoto, J.; Tsunoda, S. P.; Horigane, S.-i.; Ueda, S.; Takemoto-Kimura, S.; Kandori, H.; Yamanaka, A.; Yamashita, T.

10.1101/798702 — neuroscience — Posted on 2019-10-09

2816 Intrinsic Architecture of Global Signal Topography and Its Modulation by Tasks

Zhang, J.; Huang, Z.; Tumati, S.; Northoff, G.

10.1101/798819 — neuroscience — Posted on 2019-10-09

2817 Critical role of de novo LTD in the formation and maintenance of hippocampal CA1 place-cell fields

Ashby, D. M.; Seamans, J. K.; Wang, Y. T.

10.1101/788729 — neuroscience — Posted on 2019-10-09

2818 The semantic control network mediates the relationship between symbolic numerical order processing and arithmetic performance in children

Sommerauer, G.; Grass, K.-H.; Grabner, R.; Vogel, S.

10.1101/791012 — neuroscience — Posted on 2019-10-09

2819 Imprecise neural computations as source of human adaptive behavior in volatile environments

Findling, C.; Chopin, N.; Koechlin, E.

10.1101/799239 — neuroscience — Posted on 2019-10-09

2820 Apparent Propagator Anisotropy from reduced Diffusion MRI acquisitions

Aja-Fernandez, S.; Tristan-Vega, A.; Jones, D.

10.1101/798892 — neuroscience — Posted on 2019-10-09

2821 Efficient sampling and noisy decisions

Heng, J. A.; Woodford, M.; Polania, R.

10.1101/799064 — neuroscience — Posted on 2019-10-09

2822 Acute and repeated intranasal oxytocin differentially modulate brain-wide functional connectivity

Pagani, M.; De Felice, A.; Montani, C.; Galbusera, A.; Papaleo, F.; Gozzi, A.

10.1101/798025 — neuroscience — Posted on 2019-10-09

2823 Area-specific synapse structure in branched axons reveals a subcellular level of complexity in thalamocortical networks

Rodriguez-Moreno, J.; Porrero, C.; Rollenhagen, A.; Rubio-Teves, M. V.; Casas-Torremocha, D.; Alonso-Nanclares, L.; Yakoubi, R.; Santuy, A.; Merchan-Perez, A.; DeFelipe, J.; Luebke, J. H.; Clasca, F.

10.1101/798926 — neuroscience — Posted on 2019-10-09

2824 Structure of E3 ligase E6AP with a novel proteasome-binding site provided by substrate receptor hRpn10

Buel, G. R.; Chen, X.; Chari, R.; O'Neill, M. J.; Ebelle, D. L.; Jenkins, C.; Sridharan, V.; Tarasov, S. G.; Tarasova, N. I.; Andresson, T.; Walters, K. J.

10.1101/797027 — molecular biology — Posted on 2019-10-09

2825 Substrate-mediated regulation of the arginine transporter of Toxoplasma gondii

Rajendran, E.; Clark, M.; Goulart, C.; Steinhoefel, B.; Tjhin, E. T.; Smith, N. C.; Kirk, K.; van Dooren, G. G.

10.1101/798967 — microbiology — Posted on 2019-10-09

2826 Native and invasive populations of the ectomycorrhizal death cap Amanita phalloides are highly sexual but dispersal limited

Golan, J. J.; Adams, C.; Cross, H.; Elmore, H.; Gardes, M.; Glassman, S. I.; Goncalves, S.; Hess, J. I.; Richard, F.; Wang, Y.-W.; Wolfe, B.; Pringle, A.

10.1101/799254 — microbiology — Posted on 2019-10-09

2827 Validating a screening agar for linezolid-resistant enterococci

Werner, G.; Fleige, C.; Klare, I.; Weber, R. E.; Bender, J. K.

10.1101/798983 — microbiology — Posted on 2019-10-09

2828 Persistent transmission of shigellosis in England is associated with a recently emerged multi-drug resistant strain of Shigella sonnei

Jenkins, C.; Bardsley, M.; Mitchell, H. D.; Mikhail, A. F. W.; Baker, K. S.; Foster, K.; Hughes, G.; Dallman, T. J.

10.1101/798835 — genomics — Posted on 2019-10-09

2829 Saturation mutagenesis genome engineering of infective {Phi}X174 bacteriophage via unamplified oligo pools and golden gate assembly

Faber, M. S.; Van Leuven, J. T.; Ederer, M. M.; Wilson, Z. L.; Sapozhnikov, Y.; Wichman, H. A.; Whitehead, T. A.; Miller, C. R.

10.1101/798546 — genomics — Posted on 2019-10-09

2830 Choosing the optimal population for a genome-wide association study: a simulation using whole-genome sequences from rice

Hamazaki, K.; Kajiya-Kanegae, H.; Yamasaki, M.; Ebana, K.; Yabe, S.; Nakagawa, H.; Iwata, H.

10.1101/798850 — genomics — Posted on 2019-10-09

2831 Chromosome-level genome assembly of the greenfin horse-faced filefish (Thamnaconus septentrionalis) using Oxford Nanopore PromethION sequencing and Hi-C technology

Bian, L.; Li, F.; Ge, J.; Wang, P.; Chang, Q.; Zhang, S.; Li, J.; Liu, C.; Liu, K.; Liu, X.; Li, X.; Chen, H.; Chen, S.; Shao, C.; Lin, Z.

10.1101/798744 — genomics — Posted on 2019-10-09

2832 Physical activity reduces colorectal cancer risk independent of BMI - A two-sample Mendelian randomisation study

ZHANG, X.; Theodoratou, E.; Li, X.; Farrington, S. M.; Law, P. J.; Broderick, P.; Walker, M.; Rees, J. M.; Houlston, R.; Tomlinson, I. P.; Campbell, H.; Dunlop, M. G.; Timofeeva, M.

10.1101/798470 — genetics — Posted on 2019-10-09

2833 Whole genome sequencing of 358 brown planthoppers uncovers the landscape of their migration and dispersal worldwide

Hu, Q.-L.; Zhuo, J.-C.; Ye, Y.-X.; Li, D.-T.; Lou, Y.-H.; Zhang, X.-Y.; Chen, X.; Wang, S.-L.; Wang, Z.-C.; Lu, J.-B.; Mizlan, N.; Nguyen, H. C.; Oo, S. S.; Thet, T.; Sharma, P. N.; Jauharlina, J.; Rahman, S. M. M.; Ansari, N. A.; Chen, A.-D.; Zhu, Z.-R.; Heong, K. L.; Cheng, J.-A.; Zhan, S.; Zhang, C.-X.

10.1101/798876 — evolutionary biology — Posted on 2019-10-09

2834 Trade-offs between host tolerances to different pathogens in plant-virus interactions

montes, N.; Vijayan, V.; Pagan, I.

10.1101/799007 — evolutionary biology — Posted on 2019-10-09

2835 Hox gene expression during the development of the phoronid Phoronopsis harmeri

Gasiorowski, L.; Hejnol, A.

10.1101/799056 — developmental biology — Posted on 2019-10-09

2836 Membrane tension mediated mechanotransduction drives fate choice in embryonic stem cells

De Belly, H.; Jones, P. H.; Paluch, E. K.; Chalut, K. J.

10.1101/798959 — cell biology — Posted on 2019-10-09

2837 Cell surface mechanics gate stem cell differentiation

Bergert, M.; Lembo, S.; Milovanovic, D.; Boermel, M.; Neveu, P.; Diz-Munoz, A.

10.1101/798918 — biophysics — Posted on 2019-10-09

2838 Evolution of microbial growth traits under serial dilution

Lin, J.; Manhart, M.; Amir, A.

10.1101/798678 — evolutionary biology — Posted on 2019-10-09

2839 The challenge of heterogeneous evidence in conservation

Christie, A. P.; Amano, T.; Martin, P. A.; Petrovan, S. O.; Shackelford, G. E.; Simmons, B. I.; Smith, R. K.; Williams, D. R.; Wordley, C. F. R.; Sutherland, W. J.

10.1101/797639 — ecology — Posted on 2019-10-09

2840 TerrestrialMetagenomeDB: a public repository of curated and standardized metadata for terrestrial metagenomes

Borim Correa, F.; Saraiva, J. P.; Stadler, P. F.; Nunes da Rocha, U.

10.1101/796441 — bioinformatics — Posted on 2019-10-09

2841 The conserved DNMT1 dependent methylation regions in human cells are vulnerable to environmental rotenone.

Freeman, D. M.; Lou, D.; Li, Y.; Martos, S. N.; Wang, Z.

10.1101/798587 — molecular biology — Posted on 2019-10-09

2842 Keeping it clean: the cell culture quality control experience at the National Center for Advancing Translational Sciences

Roth, J. S.; Lee, T. D.; Cheff, D. M.; Gosztyla, M. L.; Asawa, R.; Danchik, C.; Michael, S.; Simeonov, A.; Klumpp-Thomas, C.; Wilson, K.; Hall, M. D.

10.1101/798629 — cell biology — Posted on 2019-10-09

2843 StoatyDive: Evaluation and Classification of Peak Profiles for Sequencing Data

Heyl, F.; Backofen, R.

10.1101/799114 — bioinformatics — Posted on 2019-10-09

2844 Gene-signatures predict biologically relevant dose-response potencies in phenotypic assays

Renner, S.; Bergsdorf, C.; Bouhelal, R.; Koziczak-Holbro, M.; Amati, A. M.; Techer-Etienne, V.; Flotte, L.; Reymann, N.; Kapur, K.; Hoersch, S.; Oakeley, E. J.; Schuffenhauer, A.; Gubler, H.; Lounkine, E.; Farmer, P.

10.1101/799106 — bioinformatics — Posted on 2019-10-09

2845 Comprehensive molecular characterization of PRKCG for glioma diagnosis, prognosis and treatment prediction

Liu, L.; Wang, G.; Wang, L.; Yu, C.; Li, M.; Song, S.; Hao, L.; Ma, L.; Zhang, Z.

10.1101/798785 — bioinformatics — Posted on 2019-10-09

2846 An NMDA-R mediated short-term memory resistant to anesthesia in adult Danio rerio

Rajan, G.; Joseph, J.

10.1101/795351 — neuroscience — Posted on 2019-10-09

2847 Non-invasive multiphoton imaging of neural structure and activity in Drosophila

Aragon, M. J.; Wang, M.; Shea, J.; Mok, A. T.; Kim, H.; Lett, K. M.; Barkdull, N.; Schaffer, C. B.; Xu, C.; Yapici, N.

10.1101/798686 — neuroscience — Posted on 2019-10-09

2848 rsCaMPARI: an erasable marker of neuronal activity

Sha, F.; Abdelfattah, A. S.; Patel, R.; Schreiter, E. R.

10.1101/798298 — neuroscience — Posted on 2019-10-09

2849 Role of CRF receptor 1 antagonism in the bed nucleus of the stria terminalis of male rats after intermittent social defeat stress

Vasconcelos, M.; Stein, D.; Gallas-Lopes, M.; Landau, L.; Behrens, L.; Albrechet-Souza, L.; Miczek, K.; de Almeida, R. M. M.

10.1101/784488 — neuroscience — Posted on 2019-10-09

2850 Multimodal Study of the Effects of Varying Task Load Utilizing EEG, GSR and Eye-Tracking

Born, J.; Ramachandran, B. R. N.; Romero Pinto, S. A.; Rama, R.; Winkler, S.

10.1101/798496 — neuroscience — Posted on 2019-10-09

2851 Genotype imputation using the Positional Burrows Wheeler Transform

Rubinacci, S.; Delaneau, O.; Marchini, J.

10.1101/797944 — genetics — Posted on 2019-10-09

2852 Estimating the genome-wide contribution of selection to temporal allele frequency change

Buffalo, V.; Coop, G.

10.1101/798595 — evolutionary biology — Posted on 2019-10-09

2853 Two-stage electro-mechanical coupling of a Kv channel in voltage-dependent activation

Hou, P.; Kang, P. W.; Deyawe Kongmeneck, A.; Yang, N.-D.; Liu, Y.; Shi, J.; Xu, X.; White, K. M.; Zaydman, M. A.; Kasimova, M. A.; Seebohm, G.; Zhong, L.; Zou, X.; Tarek, M.; Cui, J.

10.1101/798207 — biophysics — Posted on 2019-10-09

2854 Post-translational polymodification of β1 tubulin regulates motor protein localisation in platelet production and function

Khan, A. O.; Slater, A.; Maclachlan, A.; Nicolson, P. L.; Pike, J. A.; Reyat, J. S. S.; Yule, J.; Thomas, S. G.; Morgan, N. V.

10.1101/595868 — cell biology — Posted on 2019-10-09

2855 Loss of the transcription factor NEUROD2 causes a spectrum of neurobehavioral phenotypes in mice and humans

Bugeon, S.; Lafi, S.; Beurrier, C.; Sahu, S.; Runge, K.; Schaller, F.; Loubat, A.; Mathieu, R.; Herault, L.; Gaillard, S.; Cahuc, M.; Pallesi-Pocachard, E.; Montheil, A.; Bosio, A.; Represa, A.; Cardoso, C.; Cremer, H.; de Chevigny, A.; Rosenfeld, J. A.; Hudson, E.; Lindstrom, K.; Mercimek-Andrews, S.; Jeffries, L.; Van Haeringen, A.; Vanakker, O.; Pichon, B.; Van Hecke, A.; Amrom, D.; Kury, S.; Gamble, C.

10.1101/296889 — neuroscience — Posted on 2019-10-09

2856 A Novel and Direct Metamobilome Approach improves the Detection of Larger-sized Circular Elements across Kingdoms

Alanin, K. S.; Joergensen, T. S.; Browne, P. D.; Petersen, B.; Riber, L.; Kot, W. P.; Hansen, L. H.

10.1101/761098 — microbiology — Posted on 2019-10-09

2857 Stop Codon Context Influences Genome-Wide Stimulation of Termination Codon Readthrough by Aminoglycosides

Wangen, J. R.; Green, R.

10.1101/798579 — molecular biology — Posted on 2019-10-09

2858 Microscaled Proteogenomic Methods for Precision Oncology

Satpathy, S.; Jaehnig, E. J.; Krug, K.; Kim, B.-J.; Saltzman, A. B.; Chan, D.; Holloway, K. R.; Anurag, M.; Huang, C.; Singh, P.; Gao, A.; Namai, N.; Dou, Y.; Wen, B.; Vasaikar, S.; Mutch, D.; Watson, M.; Ma, C.; Ademuyiwa, F. O.; Rimawi, M.; Schiff, R.; Hoog, J.; Jacobs, S.; Malovannaya, A.; Hyslop, T.; Clauser, K. C.; Mani, D. R.; Perou, C.; Miles, G.; Zhang, B.; Gillette, M. A.; Carr, S. A.; Ellis, M. J.

10.1101/796318 — cancer biology — Posted on 2019-10-09

2859 Individual Learning Phenotypes Drive Collective Cognition

Cook, C. N.; Lemanski, N. J.; Mosqueiro, T.; Ozturk, C.; Gadau, J.; Pinter-Wollman, N.; Smith, B. H.

10.1101/761676 — animal behavior and cognition — Posted on 2019-10-09

2860 Revealing the Temporal Dynamics in Non-invasive Electrophysiological recordings with Topography-based Analyses

Wang, X.; Zhu, H.; Tian, X.

10.1101/779546 — neuroscience — Posted on 2019-10-09

2861 Multi-domain cognitive assessment of male mice reveals whole body exposure to space radiation is not detrimental to high-level cognition and actually improves pattern separation.

Whoolery, C.; Yun, S.; Reynolds, R. P.; Lucero, M. J.; Soler, I.; Tran, F. H.; Ito, N.; Redfield, R. L.; Richardson, D. R.; Shih, H.-y.; Rivera, P. D.; Chen, B. P. C.; Birnbaum, S. G.; Stowe, A. M.; Eisch, A. J.

10.1101/796938 — neuroscience — Posted on 2019-10-09

2862 Transcriptome Analysis of Desquamative Interstitial Pneumonia (DIP)

Saito, S.; Kolls, J. K.; Liu, Y.; Higashi, Y.; Ohkouchi, S.; Kondoh, Y.; Lasky, J.; Suzuki, T.

10.1101/791350 — molecular biology — Posted on 2019-10-09

2863 Transmembrane 163 (TMEM163) protein effluxes zinc

Sanchez, V. B.; Ali, S.; Escobar, A.; Cuajungco, M. P.

10.1101/692525 — cell biology — Posted on 2019-10-09

2864 Cell cycle-balanced expression of pluripotency regulators via cyclin-dependent kinase 1

Kasvandik, S.; Schilf, R.; Saarma, M.; Loog, M.; Jaager, K.

10.1101/764639 — cell biology — Posted on 2019-10-09

2865 A Quantitative Proteome Map of the Human Body

Jiang, L.; Wang, M.; Lin, S.; Jian, R.; Li, X.; Chan, J. Y.; Fang, H.; Dong, G.; Tang, H.; Snyder, M.

10.1101/797373 — systems biology — Posted on 2019-10-09

2866 Wide-field time-gated SPAD imager for phasor-based FLIM applications

Ulku, A. C.; Ardelean, A.; Antolovic, I. M.; weiss, s.; Charbon, E.; Bruschini, C.; Michalet, X.

10.1101/687277 — biophysics — Posted on 2019-10-09

2867 HCMV glycoprotein B nucleoside-modified mRNA vaccine elicits antibody responses with greater durability and breadth than MF59-adjuvanted gB protein immunization

Nelson, C.; Jenks, J.; Pardi, N.; Goodwin, M.; Roark, H.; Edwards, W.; McClellan, J.; Pollara, J.; Weissman, D.; Permar, S.

10.1101/797894 — immunology — Posted on 2019-10-08

2868 Positive and negative determinants of normal linear growth among pre-school children living in better-off households: an analysis of secondary data from sub-Saharan Africa

Amugsi, D. A.; Dimbuene, Z. T.; Kimani-Murage, E. W.

10.1101/797845 — scientific communication and education — Posted on 2019-10-08

2869 Virulence potential of a multidrug-resistant Escherichia coli belonging to the emerging clonal group ST101-B1 isolated from bloodstream infection

Gheller, A. C. d. M. S.; Silva, R. M.; Valiatti, T. B.; Santos, F. F.; Cayo, R.; Streling, A. P.; Nodari, C. S.; Gales, A. C.; Nishiyama-Junior, M. Y.; Carvalho, E.; Gomes, T. A. T.

10.1101/797928 — microbiology — Posted on 2019-10-08

2870 Leukocyte-derived High-mobility group box 1 controls innate immune responses against Listeria monocytogenes.

Volmari, A.; Foelsch, K.; Yan, K.; Qi, M.; Bartels, K.; Kondratowicz, S.; Boettcher, M.; Nishibori, M.; Liu, K.; Schwabe, R. F.; Lohse, A. W.; Huber, S.; Mittruecker, H.-W.; Huebener, P.

10.1101/797902 — immunology — Posted on 2019-10-08

2871 Validating metabarcoding-based biodiversity assessments with multi-species occupancy models: a case study using coastal marine eDNA

McClenaghan, B.; Compson, Z. G.; Hajibabaei, M.

10.1101/797852 — ecology — Posted on 2019-10-08

2872 Modeling the effects of motivation on choice and learning in the basal ganglia

van Swieten, M. M. H.; Bogacz, R.

10.1101/797860 — neuroscience — Posted on 2019-10-08

2873 Overlapping and distinct roles of CDPK family members in the pre-erythrocytic cycle of the rodent malaria parasite, Plasmodium berghei

Govindasamy, K.; Bhanot, P.

10.1101/797886 — microbiology — Posted on 2019-10-08

2874 A sub-exponential branching process to study early epidemic dynamics with application to Ebola

Zarebski, A. E.; Moss, R.; McCaw, J. M.

10.1101/797878 — bioinformatics — Posted on 2019-10-08

2875 Usefulness of a familiarity signal during recognition depends on test format: Neurocognitive evidence for a core assumption of the CLS framework

Bader, R.; Mecklinger, A.; Meyer, P.

10.1101/797837 — neuroscience — Posted on 2019-10-08

2876 Schizophrenia risk from locus-specific human endogenous retroviruses

Duarte, R. R.; Bendall, M. L.; de Mulder, M.; Ormsby, C. E.; Beckerle, G. A.; Selvackadunco, S.; Troakes, C.; Reyes-Teran, G.; Crandall, K. A.; Srivastava, D. P.; Nixon, D. F.; Powell, T. R.

10.1101/798017 — neuroscience — Posted on 2019-10-08

2877 Microglial ERK activation is a critical regulator of pro-inflammatory immune responses in Alzheimer’s disease

Chen, M. J.; Ramesha, S.; Weinstock, L. D.; Gao, T.; Ping, L.; Xiao, H.; Dammer, E. B.; Duong, D. D.; Levey, A. I.; Lah, J. J.; Wood, L. B.; Rangaraju, S.

10.1101/798215 — neuroscience — Posted on 2019-10-08

2878 Social isolation uncovers a brain-wide circuit underlying context-dependent territory-covering micturition behavior

Hyun, M.; Radeljic, G.; Miner, L.; Wang, W.; Ochandarena, N.; Huang, K. W.; Osten, P.; Sabatini, B.

10.1101/798132 — neuroscience — Posted on 2019-10-08

2879 Set2-mediated alternative splicing of Srsf11 regulates cocaine reward behavior

Xu, S.-J.; Lombroso, S. I.; Carpenter, M.; Marchione, D. M.; Gazzara, M.; Hamilton, P. J.; Lim, C. J.; Neve, R.; Garcia, B. A.; Barash, Y.; Wimmer, M. E.; Lynch, K. W.; Pierce, R. C.; Heller, E. A.

10.1101/798009 — neuroscience — Posted on 2019-10-08

2880 Multivoxel Pattern of Blood Oxygen Level Dependent Activity can be sensitive to stimulus specific fine scale responses

Vizioli, L.; De Martino, F.; Petro, L.; Kersten, D.; Ugurbil, K.; Yacoub, E.; Muckli, L.

10.1101/798306 — neuroscience — Posted on 2019-10-08

2881 Remembrance of things practiced: A two-pathway circuit for sequential learning

Murray, J. M.; Escola, S.

10.1101/797548 — neuroscience — Posted on 2019-10-08

2882 Multi-domain cognitive assessment of male mice reveals whole body exposure to space radiation is not detrimental to high-level cognition and actually improves pattern separation.

10.1101/796938 — neuroscience — Posted on 2019-10-08

2883 An amygdala circuit mediates experience-dependent momentary exploratory arrests

Botta, P.; Fushiki, A.; Vicente, A. M.; Hammond, L. A.; Mosberger, A. C.; Gerfen, C. R.; Peterka, D. S.; Costa, R. M.

10.1101/797001 — neuroscience — Posted on 2019-10-08

2884 Ensemble cryo-EM structures demonstrate human IMPDH2 filament assembly tunes allosteric regulation

Johnson, M. C.; Kollman, J. M.

10.1101/798322 — molecular biology — Posted on 2019-10-08

2885 Fatty acid bioconversion in harpacticoid copepods in a changing environment: a transcriptomic approach

Boyen, J.; Fink, P.; Mensens, C.; Hablützel, P. I.; De Troch, M.

10.1101/797753 — ecology — Posted on 2019-10-08

2886 Brain Network Constraints and Recurrent Neural Networks reproduce unique Trajectories and State Transitions seen over the span of minutes in resting state fMRI

Kashyap, A.; Keilholz, S.

10.1101/798520 — bioengineering — Posted on 2019-10-08

2887 Stress-mediated convergence of splicing landscapes in male and female Rock Doves

Lang, A. S.; MacManes, M. D.; Calisi, R. M.; Harris, R. M.; Austin, S. H.

10.1101/798413 — genomics — Posted on 2019-10-08

2888 Revealing the molecular origins of fibrin’s elastomeric properties by in situ X-ray scattering

Vos, B. E.; Martinez-Torres, C.; Burla, F.; Weisel, J. W.; Koendernik, G. H.

10.1101/797464 — biophysics — Posted on 2019-10-08

2889 Imitation as a model-free process in human reinforcement learning

Najar, A.; Bonnet, E.; Bahrami, B.; Palminteri, S.

10.1101/797407 — neuroscience — Posted on 2019-10-08

2890 Seagrass excretes sugars to their rhizosphere making them the sweet spots in the sea

Sogin, E. M.; Michellod, D.; Gruber-Vodicka, H.; Bourceau, P.; Geier, B.; Meier, D.; Seidel, M.; Hach, P.; Procaccini, G.; Dubilier, N.; Liebeke, M.

10.1101/797522 — microbiology — Posted on 2019-10-08

2891 Establishment of chromatin accessibility by the conserved transcription factor Grainy head is developmentally regulated

Nevil, M.; Gibson, T. J.; Bartolutti, C.; Iyengar, A.; Harrison, M. M.

10.1101/798454 — developmental biology — Posted on 2019-10-08

2892 An experimentally-derived measure of inter-replicate variation in reference samples: the same-same permutation methodology

Handler, D. C. L.; Haynes, P. A.

10.1101/797217 — biochemistry — Posted on 2019-10-08

2893 Light-mediated decreases in cyclic di-GMP levels are potentiated by pyocyanin and inhibit structure formation in Pseudomonas aeruginosa biofilms

Kahl, L. J.; Price-Whelan, A.; Dietrich, L. E. P.

10.1101/797357 — microbiology — Posted on 2019-10-08

2894 Bacterial derived vitamin B12 enhances predatory behaviors in nematodes

Akduman, N.; Lightfoot, J. W.; Roeseler, W.; Witte, H.; Lo, W.-S.; Roedelsperger, C.; Sommer, R. J.

10.1101/797803 — microbiology — Posted on 2019-10-08

2895 Insects as phyllosphere microbiome engineers: effects of aphids on a plant pathogen.

Smee, M. R.; Real-Ramirez, I.; Hendry, T. A.

10.1101/797738 — evolutionary biology — Posted on 2019-10-08

2896 Long-term research needed to avoid spurious and misleading trends in sustainability attributes of no-till

Cusser, S.; Bahlai, C.; Swinton, S. M.; Robertson, G. P.; Haddad, N. M.

10.1101/788240 — ecology — Posted on 2019-10-08

2897 A Data-Driven Model to Identify Fatigue Level Based on the Motion Data from a Smartphone

Karvekar, S.; Abdollahi, M.; Rashedi, E.

10.1101/796854 — bioengineering — Posted on 2019-10-08

2898 Ratiometric bioluminescent sensors towards in vivo imaging of bacterial signaling

Dippel, A. B.; Anderson, W. A.; Park, J. H.; Yildiz, F. H.; Hammond, M. C.

10.1101/798140 — synthetic biology — Posted on 2019-10-08

2899 Reduced Hippocampal and Amygdala Volumes as Mechanisms of Stress Sensitization to Depression following Childhood Violence Exposure

Weissman, D. G.; Lambert, H. K.; Rodman, A. M.; Peverill, M.; Sheridan, M. A.; McLaughlin, K. A.

10.1101/798033 — neuroscience — Posted on 2019-10-08

2900 Foreign body responses in central nervous system mimic natural wound responses and alter biomaterial functions

O'Shea, T. M.; Wollenberg, A. L.; Kim, J. H.; Ao, Y.; Deming, T. J.; Sofroniew, M. V.

10.1101/797092 — neuroscience — Posted on 2019-10-08

2901 Definition of naturally processed peptides reveals convergent presentation of autoantigenic topoisomerase-I epitopes in scleroderma

Tiniakou, E.; Fava, A.; McMahan, Z.; Guhr, T. N.; O'Meally, R. N.; Shah, A. A.; Wigley, F. M.; Cole, R. N.; Boin, F.; Darrah, E.

10.1101/798249 — immunology — Posted on 2019-10-08

2902 Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape

Nguyen, B. N.; Shen, E. W.; Seemann, J.; Correa, A. M.; O'Donnell, J. L.; Altieri, A. H.; Knowlton, N.; Crandall, K. A.; Egan, S. P.; McMillan, W. O.; Leray, M.

10.1101/797712 — ecology — Posted on 2019-10-08

2903 Computational insights into mechanism of AIM4-mediated inhibition of aggregation of TDP-43 protein implicated in ALS and evidence for in vitro inhibition of liquid-liquid phase separation (LLPS) of TDP-432C-A315T by AIM4.

Girdhar, A.; Bharathi, V.; Tiwari, V. R.; Abhishek, S.; Mahawar, U. S.; Raju, G.; Singh, S. K.; Prabusankar, G.; Rajakumara, E.; Patel, B. K.

10.1101/797613 — bioinformatics — Posted on 2019-10-08

2904 REP-X: An Evolution-guided Strategy for the Rational Design of Cysteine-less Protein Variants

Dalton, K.; Lopez, T.; Pande, V.; Frydman, J.

10.1101/797969 — biochemistry — Posted on 2019-10-08

2905 Multivariate pattern analysis techniques for electroencephalography data to study interference effects

Lopez-Garcia, D.; Sobrado, A.; Penalver, J. M. G.; Gorriz, J. M.; Ruz, M.

10.1101/797415 — neuroscience — Posted on 2019-10-08

2906 Two brain pathways initiate distinct forward walking programs in Drosophila

Bidaye, S. S.; Laturney, M.; Chang, A. K.; Liu, Y.; Bockemuhl, T.; Buschges, A.; Scott, K.

10.1101/798439 — neuroscience — Posted on 2019-10-08

2907 Estrogen Drives Melanocortin Neurons To Reduce Sedentary Behavior

Krause, W. C.; Rodriguez, R.; Gegenhuber, J. B.; Matharu, N.; Rodriguez, A. N.; Padilla, A.; Herber, C. B.; Correa, S. M.; Ahituv, N. M.; Tollkuhn, J.; Ingraham, H. A.

10.1101/794792 — neuroscience — Posted on 2019-10-08

2908 Potent and lasting seizure suppression by systemic delivery of antagomirs targeting miR-134 timed with blood-brain barrier disruption

Reschke, C. R.; Almeida Silva, L. F.; Vangoor, V. R.; Rosso, M.; David, B.; Cavanagh, B.; Connolly, N. M. C.; Brennan, G. P.; Sanz-Rodriguez, A.; Mooney, C.; Batool, A.; Greene, C.; Brennan, M.; Conroy, R. M.; Ruber, T.; Prehn, J.; Campbell, M.; Pasterkamp, R. J.; Henshall, D. C.

10.1101/797621 — neuroscience — Posted on 2019-10-08

2909 Fully automated, sequential focused ion beam milling for cryo-electron tomography

Zachs, T.; Medeiros, J. M.; Schertel, A.; Weiss, G. L.; Hugener, J.; Pilhofer, M.

10.1101/797514 — molecular biology — Posted on 2019-10-08

2910 Placental Editome Profiling Reveals Widespread RNA-Editing Dysregulation in Preeclampsia

Yang, X.; Yang, J.; Liang, X.; Chen, Q.; Jiang, S.; Liu, H.; Gao, Y.; Ren, Z.; Yu, Y.; Zhong, M.; Yang, X.

10.1101/797365 — genomics — Posted on 2019-10-08

2911 Selective constraints and pathogenicity of mitochondrial DNA variants inferred from a novel database of 196,554 unrelated individuals

Bolze, A.; Mendez, F.; White, S.; Tanudjaja, F.; Isaksson, M.; Rashkin, M.; Bowes, J.; Cirulli, E. T.; Metcalf, W. J.; Grzymski, J. J.; Lee, W.; Lu, J.; Washington, N. L.

10.1101/798264 — genetics — Posted on 2019-10-08

2912 Ecology, phylogeny, and the evolution of developmental duration in birds

Cooney, C. R.; Sheard, C.; Clark, A. D.; Healy, S. D.; Liker, A.; Street, S. E.; Troisi, C. A.; Thomas, G. H.; Szekely, T.; Hemmings, N.; Wright, A. E.

10.1101/797498 — evolutionary biology — Posted on 2019-10-08

2913 Multifaceted diversity traits of crucial microbial groups in biological soil crusts promote soil multifunctionality

Li, H.; Chen, Y.-X.; Yu, G.-L.; Rossi, F.; Hua, D.; De Philippis, R.; Cheng, X.-L.; Wang, W.-B.; Li, R.-H.

10.1101/797191 — ecology — Posted on 2019-10-08

2914 BATCAVE: Calling somatic mutations with a tumor- and site-specific prior

Mannakee, B. K.; Gutenkunst, R. N.

10.1101/798348 — bioinformatics — Posted on 2019-10-08

2915 Freewater EstimatoR using iNtErpolated iniTialization (FERNET): Toward Accurate Estimation of Free Water in Peritumoral Region Using Single-Shell Diffusion MRI Data

Ould Ismail, A. A.; Parker, D.; Hernandez Fernandez, M.; Wolf, R.; Brem, S.; Alexander, S.; Hodges, W.; Pasternak, O.; Caruyer, E.; Verma, R.

10.1101/796615 — bioengineering — Posted on 2019-10-08

2916 Phenotype-Based Probabilistic Analysis of Heterogeneous Responses to Cancer Drugs and Their Combination Efficacy

Comandante-Lou, N.; Khaliq, M.; Venkat, D.; Manikkam, M.; Fallahi-Sichani, M.

10.1101/797225 — systems biology — Posted on 2019-10-08

2917 PANDAA-monium: Intentional violations of conventional qPCR design enables rapid, HIV-1 subtype-independent drug resistance SNP detection

MacLeod, I. J.; Rowley, C. F.; Essex, M.

10.1101/795054 — molecular biology — Posted on 2019-10-08

2918 Human CST complex protects replication fork stability by directly blocking MRE11 degradation of nascent strand DNA

Lyu, X.; Lei, K.-H.; Shiva, O.; Chastain, M.; Chi, P.; Chai, W.

10.1101/797647 — molecular biology — Posted on 2019-10-08

2919 ASEP: gene-based detection of allele-specific expression in a population by RNA-seq

Fan, J.; Hu, J.; Xue, C.; Zhang, H.; Reilly, M. P.; Xiao, R.; Li, M.

10.1101/798124 — genomics — Posted on 2019-10-08

2920 Genetic predisposition to myeloproliferative neoplasms implicates hematopoietic stem cell biology

Bao, E. L.; Nandakumar, S. K.; Liao, X.; Bick, A. G.; Karjalainen, J.; Tabaka, M.; Gan, O. I.; Havulinna, A.; Kiiskinen, T.; Lareau, C. A.; de Lapuente Portilla, A. L.; Li, B.; Emdin, C. A.; Codd, V.; Nelson, C. P.; Natarajan, P.; Churchhouse, C.; 23andMe Research Team, ; Nilsson, B.; Wilson, P. W. F.; Cho, K.; Pyarajan, S.; Gaziano, J. M.; Samani, N. J.; Million Veteran Program, ; Regev, A.; Palotie, A.; Neale, B. M.; Dick, J. E.; O'Donnell, C. J.; Daly, M. J.; Milyavsky, M.; Kathiresan, S.; Sankaran, V. G.

10.1101/790626 — genetics — Posted on 2019-10-08

2921 Comparative genomics identifies putative signatures of sociality in spiders

Tong, C.; Najm, G. M.; Pinter-Wollman, N.; Pruitt, J. N.; Linksvayer, T. A.

10.1101/797241 — evolutionary biology — Posted on 2019-10-08

2922 Quantifying the relative importance of competition, predation, and environmental variation for species coexistence

Shoemaker, L. G.; Barner, A. K.; Bittleston, L. S.; Teufel, A. I.

10.1101/797704 — ecology — Posted on 2019-10-08

2923 Influence of selective treatment on Haematobia irritans infestation of untreated cattle

Miraballes, C.; Stryhn, H.; Barros, A. T. M.; Lucas, M.; Domingues, L. N.; Ribeiro, R.; Monge, M.; Fraga, A.; Riet-Correa, F.

10.1101/798231 — ecology — Posted on 2019-10-08

2924 Identification of the lymphangioleiomyomatosis cell and its uterine origin

Guo, M.; Yu, J. J.; Perl, A. K.; Wikenheiser-Brokamp, K. A.; Riccetti, M.; Zhang, E. Y.; Sudha, P.; Adam, M.; Potter, A.; Kopras, E. J.; Giannikou, K.; Potter, S. S.; Sherman, S.; Hammes, S. R.; Kwiatkowski, D. J.; Whitsett, J. A.; McCormack, F. X.; Xu, Y.

10.1101/784199 — cancer biology — Posted on 2019-10-08

2925 Coordination during group departures and group progressions in the tolerant multilevel society of wild Guinea baboons (Papio papio)

Montanari, D.; Hambuckers, J.; Fischer, J.; Zinner, D.

10.1101/797761 — animal behavior and cognition — Posted on 2019-10-08

2926 Even neurotypical children are heterogeneous: using multivariate decoding to improve individual subject analysis of lexico-semantic EEG data

Petit, S.; Badcock, N. A.; Grootswagers, T.; Woolgar, A.

10.1101/797175 — animal behavior and cognition — Posted on 2019-10-08

2927 A space-saving visual screening method, Glycine max FAST, for generating transgenic soybean

Iwabuchi, K.; Shimada, T. L.; Yamada, T.; Hara-Nishimura, I.

10.1101/797282 — plant biology — Posted on 2019-10-08

2928 Phytoene Synthase 2 Can Compensate for the Absence of Psy1 in Pepper Fruit (Capsicum annuum)

Jang, S.-J.; Jeong, H.-B.; Jung, A.; Kang, M.-Y.; Kim, S.; Ha, S.-H.; Kwon, J.-K.; Kang, B.-C. S. H.

10.1101/797977 — plant biology — Posted on 2019-10-08

2929 A neural circuit basis for context-modulation of individual locomotor behavior

Skutt-Kakaria, K.; Reimers, P.; Currier, T. A.; Werkhoven, Z.; de Bivort, B. L.

10.1101/797126 — neuroscience — Posted on 2019-10-08

2930 Vaping nicotine-containing electronic cigarettes produces addiction-like behaviors and cardiopulmonary abnormalities in rats

Smith, L. C.; Kallupi, M.; Tieu, L.; Jaquish, A.; Barr, J.; Su, Y.; Velarde, N.; Sedighim, S.; Klodnicki, M.; Carrette, L. L. G.; Sun, X.; de Guglielmo, G.; George, O.

10.1101/797084 — neuroscience — Posted on 2019-10-08

2931 Regime shifts in a phage-bacterial ecosystem and strategies for its control

Maslov, S.; sneppen, k.

10.1101/797456 — microbiology — Posted on 2019-10-08

2932 Shifting transmission risk for malaria in Africa with climate change: a framework for planning and intervention

Ryan, S. J.; Lippi, C. A.; Zermoglio, F.

10.1101/797050 — ecology — Posted on 2019-10-08

2933 Loss of Competence in early development is mediated by loss of chromatin accessibility

Esmaeili, M.; Blythe, S. A.; Tobias, J. W.; Zhang, K.; Yang, J.; Klein, P. S.

10.1101/797183 — developmental biology — Posted on 2019-10-08

2934 Enhancing fMRI language lateralization indices by homotopic mapping

Pesci, M.; van Steensel, M.; Ramsey, N.; Raemaekers, M.

10.1101/792515 — neuroscience — Posted on 2019-10-08

2935 Genomic Polymorphisms in Toxin-Antitoxin Systems and Identification of Novel Phylo-SNPs and Polymorphisms Associated with Drug Resistance/Susceptibility in Clinical Isolates of Mycobacterium tuberculosis from Mumbai, India

Nilgiriwala, K. S.; Chitalia, V.; Shah, S.; Papewar, A.

10.1101/797274 — bioinformatics — Posted on 2019-10-08

2936 Automated cryo-lamella preparation for high-throughput in-situ structural biology

Buckley, G.; Gervinskas, G.; Venugopal, H.; Taveneau, C.; Whisstock, J. C.; de Marco, A.

10.1101/797506 — cell biology — Posted on 2019-10-08

2937 High-resolution cryo-EM reconstructions in the presence of substantial aberrations

Bromberg, R.; Guo, Y.; Borek, D.; Otwinowski, Z.

10.1101/798280 — biophysics — Posted on 2019-10-08

2938 Cryo-EM structure of the mitochondrial protein-import channel TOM complex from Saccharomyces cerevisiae.

Tucker, K.; Park, E.

10.1101/798371 — biochemistry — Posted on 2019-10-08

2939 A Single-Cell Atlas and Lineage Analysis of the Adult Drosophila Ovary

Rust, K.; Byrnes, L.; Shengyang Yu, K.; Park, J. S.; Sneddon, J. B.; Tward, A. D.; Nystul, T. G.

10.1101/798223 — developmental biology — Posted on 2019-10-08

2940 DMD-based super-resolution structured illumination microscopy visualizes live cell dynamics at high speed and low cost

Sandmeyer, A.; Lachetta, M.; Sandmeyer, H.; Hübner, W.; Huser, T.; Müller, M.

10.1101/797670 — biophysics — Posted on 2019-10-08

2941 Mammary epithelial cells have lineage-restricted metabolic identities

Mahendralingam, M.; Aliar, K.; Casey, A. E.; Pellacani, D.; Kim, H.; Ignatchenko, V.; Valero, M. G.; Palomero, L.; Sinha, A.; Stambolic, V.; Alam, M.; Schimmer, A.; Berman, H.; Pujana, M. A.; Eaves, C. J.; Kislinger, T. R.; Khokha, R.

10.1101/798173 — cell biology — Posted on 2019-10-08

2942 Obstacles to Studying Alternative Splicing Using scRNA-seq

Westoby, J.; Artemov, P.; Hemberg, M.; Ferguson-Smith, A. C.

10.1101/797951 — bioinformatics — Posted on 2019-10-08

2943 Adaptive resetting of tuberoinfundibular dopamine (TIDA) network activity during lactation in mice

Thorn Perez, C.; Ferraris, J.; van Lunteren, J. A.; Hellysaz, A.; Iglesias, M. J.; Broberger, C.

10.1101/797159 — neuroscience — Posted on 2019-10-08

2944 Selecting for altered substrate specificity reveals the evolutionary flexibility of ATP-binding cassette transporters

Srikant, S.; Gaudet, R.; Murray, A. W.

10.1101/797100 — evolutionary biology — Posted on 2019-10-08

2945 Abscission couples cell division to embryonic stem cell fate

Chaigne, A.; Labouesse, C.; Agnew, M.; Hannezo, E.; Chalut, K. J.; Paluch, E. K.

10.1101/798165 — cell biology — Posted on 2019-10-08

2946 Autonomous bioluminescence imaging of single mammalian cells with the bacterial bioluminescence system

Gregor, C.; Pape, J. K.; Gwosch, K. C.; Gilat, T.; Sahl, S. J.; Hell, S. W.

10.1101/798108 — biochemistry — Posted on 2019-10-08

2947 Fluorescent reporter plasmids for single-cell and bulk-level composition assays in E. faecalis

Hallinen, K. M.; Guardiola-Flores, K. A.; Wood, K. B.

10.1101/797936 — microbiology — Posted on 2019-10-08

2948 Phase separation by ssDNA binding protein controlled via protein-protein and protein-DNA interactions

Harami, G. M.; Kovacs, Z. J.; Pancsa, R.; Palinkas, J.; Barath, V.; Tarnok, K.; Malnasi-Csizmadia, A.; Kovacs, M.

10.1101/797431 — biochemistry — Posted on 2019-10-08

2949 Systems-level physiology of the human red blood cell is computed from metabolic and macromolecular mechanisms

Yurkovich, J. T.; Yang, L.; Palsson, B. O.

10.1101/797258 — systems biology — Posted on 2019-10-08

2950 The PMK-3 (p38) Mitochondrial Retrograde Response Functions in Intestinal Cells to Extend Life via the ESCRT Machinery.

Radetskaya, O.; Lane, R. K.; Friedman, T.; Garrett, A.; Borror, M. B.; Russell, J.; Rea, S. L.

10.1101/797308 — pathology — Posted on 2019-10-08

2951 Hif-1alpha stabilisation is protective against infection in a zebrafish model of co-morbidity

Schild, Y.; Mohamed, A.; Wootton, E. J.; Lewis, A.; Elks, P. M.

10.1101/797480 — immunology — Posted on 2019-10-08

2952 TRMT2B is responsible for both tRNA and rRNA m5U-methylation in human mitochondria

Minczuk, M.; Powell, C. A.

10.1101/797472 — molecular biology — Posted on 2019-10-08

2953 Small molecule activation of metabolic enzyme pyruvate kinase muscle isozyme 2, PKM2, provides photoreceptor neuroprotection

Wubben, T. J.; Pawar, M.; Weh, E.; Smith, A.; Sajjakulnukit, P.; Zhang, L.; Dai, L.; Hager, H.; Pai, M. P.; Lyssiotis, C. A.; Besirli, C. G.

10.1101/797118 — molecular biology — Posted on 2019-10-08

2954 Detection of antibodies against a conserved capsid epitope as the basis of a novel universal serological test for foot-and-mouth disease

Asfor, A. S.; Howe, N.; Grazioli, S.; Berryman, S.; Parekh, K.; Wilsden, G.; Ludi, A. B.; King, D. P.; Parida, S.; Brocchi, E.; Tuthill, T. J.

10.1101/797332 — immunology — Posted on 2019-10-08

2955 In Vivo Study of Key Transcription Factors in Muscle Satellite Cells by CRISPR/Cas9/AAV9-sgRNA Mediated Genome Editing

WANG, H.; HE, L.; Ding, Y.; Zhao, Y.; SO, K.; Peng, X.; Li, Y.; Yuan, J.; Sun, H.

10.1101/797746 — genetics — Posted on 2019-10-08

2956 Degradation of the repetitive genomic landscape in a close relative of C. elegans

Woodruff, G. C.; Teterina, A. A.

10.1101/797035 — evolutionary biology — Posted on 2019-10-08

2957 Differential sorting behavior for soluble and transmembrane cargoes at the trans-Golgi network in endocrine cells.

Hummer, B. H.; Maslar, D.; Soltero Gutierrez, M.; de Leeuw, N. F.; Asensio, C. S.

10.1101/797134 — cell biology — Posted on 2019-10-08

2958 miR-206 family is important for mitochondrial and muscle function, but not essential for myogenesis in vitro

Przanowska, R. K.; Sobierajska, E.; Su, Z.; Jensen, K.; Przanowski, P.; Nagdas, S.; Kashatus, J. A.; Kashatus, D. F.; Bhatnagar, S.; Lukens, J. R.; Dutta, A.

10.1101/796821 — molecular biology — Posted on 2019-10-08

2959 Grandpaternal effects are lineage- and sex-specific in threespined sticklebacks

Hellmann, J. K.; Carlson, E. R.; Bell, A. M.

10.1101/796995 — evolutionary biology — Posted on 2019-10-08

2960 Establishment of morphological atlas of Caenorhabditis elegans embryo with cellular resolution using deep-learning-based 4D segmentation

Cao, J.; Guan, G.; Wong, M.-K.; Chan, L.-Y.; Tang, C.; Zhao, Z.; Yan, H.

10.1101/797688 — developmental biology — Posted on 2019-10-08

2961 Biophysical properties of intermediate states of EMT outperform both epithelial and mesenchymal states.

Margaron, Y.; Nagai, T.; Guyon, L.; Kurzawa, L.; Morel, A.-P.; Pinheiro, A.; Blanchoin, L.; Reyal, F.; Puisieux, A.; Thery, M.

10.1101/797654 — cell biology — Posted on 2019-10-08

2962 Disentangling the Behavioural Variability of Confined Cell Migration

Brueckner, D. B.; Fink, A.; Raedler, J. O.; Broedersz, C. P.

10.1101/797555 — biophysics — Posted on 2019-10-08

2963 Coexistence of lipid phases stabilizes interstitial water in the outer layer of mammalian skin

MacDermaid, C. M.; Hall, K. W.; DeVane, R. H.; Klein, M. L.; Fiorin, G.

10.1101/786699 — biophysics — Posted on 2019-10-08

2964 Characterization of conformational dynamics at microsecond timescale in the RNA-binding regions of dsRNA-binding domains

Paithankar, H.; Chugh, J.

10.1101/797449 — biophysics — Posted on 2019-10-08

2965 A Quantitative Proteome Map of the Human Body

Jiang, L.; Wang, M.; Lin, S.; Jian, R.; Li, X.; Chan, J. Y.; Fang, H.; Dong, G.; Tang, H.; Snyder, M.

10.1101/797373 — systems biology — Posted on 2019-10-08

2966 Complex roles for reactive astrocytes in the triple transgenic mouse model of Alzheimer disease

Guillemaud, O.; Ceyzeriat, K.; Saint-Georges, T.; Cambon, K.; Petit, F.; Ben Haim, L.; Carrillo-de Sauvage, M.-A.; Guillermier, M.; Bernier, S.; Herard, A.-S.; Josephine, C.; Bemelmans, A.-P.; Brouillet, E.; Hantraye, P.; Bonvento, G.; Escartin, C.

10.1101/797662 — neuroscience — Posted on 2019-10-08

2967 Isolation and maintenance of Batrachochytrium salamandrivorans cultures

Robinson, K. A.; Pereira, K. E.; Bletz, M. C.; Carter, E. D.; Gray, M. J.; Piovia-Scott, J.; Romansic, J. M.; Woodhams, D. C.; Fritz-Laylin, L.

10.1101/796920 — microbiology — Posted on 2019-10-08

2968 Astrovirus Replication Is Inhibited by Nitazoxanide In Vitro and In Vivo

Hargest, V.; Sharp, B.; Livingston, B.; Cortez, V.; Schultz-Cherry, S.

10.1101/797316 — microbiology — Posted on 2019-10-08

2969 Sporulation environment drives phenotypic variation in the pathogen Aspergillus fumigatus

Kang, S. E.; Momany, M.

10.1101/797076 — microbiology — Posted on 2019-10-08

2970 Rapid and differential evolution of the venom composition of a parasitoid wasp depending on the host strain

Cavigliasso, F.; Mathe-Hubert, H.; Kremmer, L.; Rebuf, C.; Gatti, J.-L.; Malausa, T.; Colinet, D.; Poirie, M.

10.1101/796649 — evolutionary biology — Posted on 2019-10-08

2971 Somatic selection of poorly differentiating variant stem cell clones could be a key to human ageing

Bodmer, W. F.; Crouch, D. J. M.

10.1101/797530 — cell biology — Posted on 2019-10-08

2972 Phosphoregulation provides functional specificity to biomolecular condensates in the cell cycle and cell polarity

Gerbich, T.; Gladfelter, A.

10.1101/796755 — cell biology — Posted on 2019-10-08

2973 Examining go-or-grow using fluorescent cell-cycle indicators and cell cycle-inhibiting drugs

Vittadello, S. T.; McCue, S. W.; Gunasingh, G.; Haass, N. K.; Simpson, M. J.

10.1101/797142 — biophysics — Posted on 2019-10-08

2974 Estimation of high-order aberrations and anisotropic magnification from cryo-EM datasets in RELION-3.1

Zivanov, J.; Nakane, T.; Scheres, S.

10.1101/798066 — biophysics — Posted on 2019-10-08

2975 The maize heterotrimeric G-protein β subunit controls shoot meristem development and immune responses.

Wu, Q.; Xu, F.; Liu, L.; Char, S. N.; Ding, Y.; Schmelz, E. A.; Yang, B.; Jackson, D.

10.1101/797985 — plant biology — Posted on 2019-10-08

2976 Regulation of community functional composition across taxonomic variation by resource-consumer dynamics

Worden, L.

10.1101/677682 — ecology — Posted on 2019-10-08

2977 MetaSanity: An integrated, customizable microbial genome evaluation and annotation pipeline

Neely, C. J.; Graham, E. D.; Tully, B. J.

10.1101/789024 — bioinformatics — Posted on 2019-10-08

2978 Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: An inter-laboratory study

Doyle, R. M.; O'Sullivan, D. M.; Aller, S. D.; Bruchmann, S.; Clark, T. G.; Coello Pelegrin, A.; Cormican, M.; Diez Benavente, E.; Ellington, M. J.; McGrath, E.; Motro, Y.; Phuong Thuy Nguyen, T.; Phelan, J.; Shaw, L. P.; Stabler, R. A.; van Belkum, A. A.; van Dorp, L.; Woodford, N.; Moran-Gilad, J.; Huggett, J.; Harris, K. A.

10.1101/793885 — microbiology — Posted on 2019-10-08

2979 Immuno-moodulin: a new anxiogenic factor produced by autoimmune-prone T cells

Piras, G.; Rattazzi, L.; Paschalidis, N.; Oggero, S.; Berti, G.; Ono, M.; Bellia, F.; D'Addario, C.; Dell'Osso, B.; Pariante, C.; Perretti, M.; D'Acquisto, F.

10.1101/796664 — immunology — Posted on 2019-10-08

2980 Evolutionary analyses guide selection of model systems to investigate proto-oncogene function in ALK and LTK

Wang, Z.; Dornburg, A.; Wang, J.; Elizabeth, M.; Lopez-Giraldez, F.; Townsend, J. P.

10.1101/795468 — cancer biology — Posted on 2019-10-08

2981 GenomeQC: A quality assessment tool for genome assemblies and gene structure annotations

Manchanda, N.; Portwood, J. L.; Woodhouse, M. R.; Seetharam, A.; Lawrence-Dill, C. J.; Andorf, C. M.; Hufford, M.

10.1101/795237 — bioinformatics — Posted on 2019-10-08

2982 Genetic diversity and structure of sweet chestnut (Castanea sativa Mill.) in France: At the intersection between Spain and Italy

Bouffartigue, C.; Debille, S.; Fabreguettes, O.; Ramos Cabrer, A.; Pereira-Lorenzo, S.; Flutre, T.; Harvengt, L.

10.1101/792259 — genetics — Posted on 2019-10-08

2983 Multi Epitope Vaccine Prediction Against Aichi Virus using Immunoinformatic Approach

Ali Hassan, A.; Mohamed, S. A.; Musa, M. A.; ELtahier, A. F.; Abdelrahman Ali, W. M.; Ibrahim, E. A.; Hamdi, A.; Hassan, M. A. S.

10.1101/795427 — bioinformatics — Posted on 2019-10-08

2984 Daughterless, the Drosophila orthologue of TCF4, is required for associative learning and maintenance of synaptic proteome

Tamberg, L.; Jaago, M.; Säälik, K.-L.; Shubina, A.; Kiir, C. S.; Sirp, A.; Timmusk, T.; Palgi, M.

10.1101/792796 — neuroscience — Posted on 2019-10-08

2985 Multiple environmental signaling pathways control the differentiation of RORγt-expressing regulatory T cells

Hussein, H.; Denanglaire, S.; Van Gool, F.; Azouz, A.; Ajouaou, Y.; El-Khatib, H.; Oldenhove, G.; Leo, O.; Andris, F.

10.1101/791244 — immunology — Posted on 2019-10-08

2986 The PRR14 heterochromatin tether encodes modular domains that mediate and regulate nuclear lamina targeting

Dunlevy, K. L.; Medvedeva, V.; Wilson, J. E.; Hoque, M.; Pellegrin, T.; Maynard, A.; Kremp, M. M.; Wasserman, J. S.; Poleshko, A.; Katz, R. A.

10.1101/788356 — cell biology — Posted on 2019-10-08

2987 Alzheimer’s genetic risk factor FERMT2 (Kindlin-2) is regulated by risk allele-binding of miR-4504 and leads to synaptic dysfunction in an APP-dependent manner

Eysert, F.; Coulon, A.; Boscher, E.; Vreulx, A.-C.; Flaig, A.; Mendes, T.; Hughes, S.; Grenier-Boley, B.; Hanoulle, X.; Demiautte, F.; Bauer, C.; Marttinen, M.; Takalo, M.; Amouyel, P.; Desai, S.; Pike, I.; Hiltunen, M.; Checler, F.; Farinelli, M.; Delay, C.; Malmanche, N.; Hebert, S.; Dumont, J.; Kilinc, D.; Lambert, J.-C.; Chapuis, J.

10.1101/767194 — neuroscience — Posted on 2019-10-08

2988 DNA breaks are key contributors to the cost of antibiotic resistance

Balbontin, R.; Gordo, I.

10.1101/756767 — microbiology — Posted on 2019-10-08

2989 Geomagnetic field absence reduces adult body weight of a migratory insect by disrupting feeding behavior and appetite regulation

Wan, G.; Jiang, S.; Zhang, M.; Zhao, J.; Zhang, Y.; Pan, W.; Sword, G. A.; Chen, F.

10.1101/737361 — physiology — Posted on 2019-10-08

2990 The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues

Muyas, F.; Zapata, L.; Guigo, R.; Ossowski, S.

10.1101/687822 — genomics — Posted on 2019-10-08

2991 Empirical patterns of environmental variation favor the evolution of adaptive transgenerational plasticity

Colicchio, J.; Herman, J. J.

10.1101/426007 — ecology — Posted on 2019-10-08

2992 Polymer-like model to study the dynamics of dynamin filaments on deformable membrane tubes

Noel, J. K.; Noe, F.; Daumke, O.; Mikhailov, A.

10.1101/686873 — biophysics — Posted on 2019-10-08

2993 The complexity dividend: when sophisticated inference matters

Tavoni, G.; Doi, T.; Pizzica, C.; Balasubramanian, V.; Gold, J. I.

10.1101/563346 — neuroscience — Posted on 2019-10-08

2994 Colour preferences of Spotted Wing Drosophila, Drosophila suzukii, under field conditions in various crops

Fahrentrapp, J.; Roosjen, P.; Green, D. R.; Gregory, B.; Panassiti, B.

10.1101/756189 — ecology — Posted on 2019-10-08

2995 Mitf links neuronal activity and long-term homeostatic intrinsic plasticity

Atacho, D.; Reynisson, H.; Peturdottir, A. T.; Eysteinsson, T.; Steingrimsson, E.; Petersen, P.

10.1101/507640 — neuroscience — Posted on 2019-10-08

2996 Plexin-Bs enhance their GAP activity with a novel activation switchloop

LI, Z.; Greven, J. M.; Kim, S.; Tamagnone, L.; Buck, M.

10.1101/796748 — biophysics — Posted on 2019-10-08

2997 Genome-scale Model Constrained by Proteomics Reveals Metabolic Rearrangements in the Heterologous Host Streptomyces coelicolor

Sulheim, S.; Kumelj, T.; van Dissel, D.; Salehzadeh-Yazdi, A.; Du, C.; Nieselt, K.; Almaas, E.; Wentzel, A.; Kerkhoven, E. J.

10.1101/796722 — systems biology — Posted on 2019-10-08

2998 MYPT1 O-GlcNAcylation controls the sensitivity of fibroblasts to sphingosine-1-phosphate mediated cellular contraction

Pedowitz, N. J.; Batt, A. R.; Darabedian, N.; Pratt, M. R.

10.1101/796672 — cell biology — Posted on 2019-10-08

2999 Microscaled Proteogenomic Methods for Precision Oncology

10.1101/796318 — cancer biology — Posted on 2019-10-08

3000 Modeling brain dynamics after tumor resection using The Virtual Brain

Aerts, H.; Schirner, M.; Dhollander, T.; Jeurissen, B.; Achten, E.; Van Roost, D.; Ritter, P.; Marinazzo, D.

10.1101/752931 — neuroscience — Posted on 2019-10-08

3001 Modelling in vitro mycelial growth, sporulation and spore germination of Pseudocercospora musae under different illuminance levels

Santana-Filho, D. M.; Silva, M. C.; Cordeiro, Z. J. M.; Rocha, H. S.; Laranjeira, F. F.

10.1101/795450 — microbiology — Posted on 2019-10-08

3002 The transcriptional response of genes to RpoS concentration in Escherichia coli is not determined by core promoter sequences

Beeler, S. M.; Doering, C. R.; Tran, S.; Stoebel, D. M.

10.1101/796656 — microbiology — Posted on 2019-10-08

3003 Immuno-moodulin: a new anxiogenic factor produced by autoimmune-prone T cells

D'Acquisto, F.; Piras, G.; Rattazzi, L.; Paschalidis, N.; Oggero, S.; Berti, G.; Ono, M.; Bellia, F.; D'Addario, C.; Dell'Osso, B.; Pariante, C.; Perretti, M.

10.1101/796664 — immunology — Posted on 2019-10-08

3004 Phosphoproteomics of CD2 signaling reveals an AMPK-dependent regulation of lytic granule polarization in cytotoxic T cells

Zurli, V.; Montecchi, T.; Heilig, R.; Poschke, I.; Volkmar, M.; Wimmer, G.; Boncompagni, G.; Turacchio, G.; D'Elios, M. M.; Campoccia, G.; Resta, N.; Offringa, R.; Fischer, R.; Acuto, O.; Baldari, C. T.; Kabanova, A.

10.1101/795963 — immunology — Posted on 2019-10-08

3005 Evaluating the performance of malaria genomics for inferring changes in transmission intensity using transmission modelling

Watson, O. J.; Okell, L. C.; Joel, H.; Slater, H.; Unwin, H. J. T.; Omedo, I.; Bejon, P.; Snow, R. W.; Noor, A. M.; Rockett, K.; Hubbart, C.; Nankabirwa, J. I.; Greenhouse, B.; Chang, H.-H.; Ghani, A. C.; Verity, R.

10.1101/793554 — genetics — Posted on 2019-10-08

3006 Large scale genome-wide association study in a Japanese population identified 45 novel susceptibility loci for 22 diseases

Ishigaki, K.; Akiyama, M.; Kanai, M.; Takahashi, A.; Kawakami, E.; Sugishita, H.; Sakaue, S.; Matoba, N.; Low, S.-K.; Okada, Y.; Terao, C.; Amariuta, T.; Gazal, S.; Kochi, Y.; Horikoshi, M.; Suzuki, K.; Ito, K.; Momozawa, Y.; Hirata, M.; Matsuda, K.; Ikeda, M.; Iwata, N.; Ikegawa, S.; Kou, I.; Tanaka, T.; Nakagawa, H.; Suzuki, A.; Hirota, T.; Tamari, M.; Chayama, K.; Miki, D.; Mori, M.; Nagayama, S.; Daigo, Y.; Miki, Y.; Katagiri, T.; Ogawa, O.; Obara, W.; Ito, H.; Yoshida, T.; Imoto, I.; Takahashi, T.; Tanikawa, C.; Suzuki, T.; Sinozaki, N.; Minami, S.; Yamaguchi, H.; Asai, S.; Takahashi, Y.;

10.1101/795948 — genetics — Posted on 2019-10-08

3007 Genetic diversity and structure of sweet chestnut (Castanea sativa Mill.) in France: At the intersection between Spain and Italy

Bouffartigue, C.; Debille, S.; Fabreguettes, O.; Ramos Cabrer, A.; Pereira-Lorenzo, S.; Flutre, T.; Harvengt, L.

10.1101/792259 — genetics — Posted on 2019-10-08

3008 Intra-individual behavioural variability: a trait under genetic control

Henriksen, R.; Hoeglund, A.; Fogelholm, J.; Abbey-Lee, R.; Johnsson, M.; Dingemanse, N.; Wright, D.

10.1101/795864 — evolutionary biology — Posted on 2019-10-08

3009 Computational identification of cell-specific variable regions in ChIP-seq data

Andreani, T.; Albrecht, S.; Fontaine, J.-F.; Andrade, M.

10.1101/796383 — bioinformatics — Posted on 2019-10-08

3010 Measurement of organ-specific and acute-phase blood protein levels in early Lyme disease

Zhou, Y.; Qin, S.; Sun, M.; Tang, L.; Yan, X.; Kim, T.-K.; Caballero, J.; Glusman, G.; Brunkow, M. E.; Soloski, M. J.; Rebman, A. W.; Scanvarda, C.; Cooper, D.; Omenn, G. S.; Moritz, R. L.; Wormser, G. P.; Price, N. D.; Aucoutt, J. N.; Hood, L.

10.1101/795344 — systems biology — Posted on 2019-10-08

3011 From cognitive control to creativity: The conflict resolution of surrealistic imagery

Ruzzoli, M.; McGuinness, A.; Moris Fernandez, L.; Soto-Faraco, S.

10.1101/796128 — neuroscience — Posted on 2019-10-08

3012 A reciprocal inhibition model of alternations between non-dissociative and dissociative states in patients with PTSD

Chiba, T.; Ide, K.; Boku, S.; Taylor, J. E.; Toda, H.; Kanazawa, T.; Kato, S.; Horiuchi, Y.; Hishimoto, A.; Maruyama, T.; Yamamoto, T.; Shirakawa, M.; Sora, I.; Kawato, M.; Koizumi, A.

10.1101/795732 — neuroscience — Posted on 2019-10-08

3013 Eye contact in active and passive viewing: event-related brain potential evidence from a combined eye tracking and EEG study

Stephani, T.; Kirk Driller, K.; Dimigen, O.; Sommer, W.

10.1101/669341 — neuroscience — Posted on 2019-10-08

3014 Upstream translation initiation expands the coding capacity of segmented negative-strand RNA viruses

Sloan, E.; Alenquer, M.; Chung, L.; Clohisey, S. M. R.; Dinan, A. M.; Gifford, R. J.; Gu, Q.; Irigoyen, N.; Jones, J. D.; van Knippenberg, I.; Rezelj, V. V.; Wang, B.; Wise, H.; Amorim, M.-J.; Baillie, J. K.; Brierley, I.; Digard, P.; Firth, A.; MacLeod, M. K.; Hutchinson, E.

10.1101/795815 — molecular biology — Posted on 2019-10-08

3015 Human iPSC modeling elucidates mutation-specific responses to gene therapy in a genotypically diverse dominant maculopathy

10.1101/796581 — genetics — Posted on 2019-10-08

3016 Physical fitness in community dwelling older adults is linked to dietary intake, gut microbiota and metabolomic signatures

Castro-Mejia, J. L.; Khakimov, B.; Krych, L.; Bülow, J.; Bechshoft, R. L.; Hojfeldt, G.; Mertz, K. H.; Garne, E. S.; Schacht, S. R.; Ahmad, H. F. A.; Kot, W.; Hansen, L. H.; Perez-Cueto, F. J. A.; Lind, M. V.; Lassen, A. J.; Tetens, I.; Jensen, T.; Reitelseder, S.; Jespersen, A. P.; Holm, L.; Engelsen, S. B.; Nielsen, D. S.

10.1101/793612 — cell biology — Posted on 2019-10-08

3017 Human gut mobileome during antibiotic therapy. A trajectory-based approach to analysis of the metagenomic time-series datasets

Gorska, A.; Schlaberg, R.; Willmann, M.; Liese, J.; Feria, J. V. M.; Wagner, S.; Autenrieth, I.; Huson, D.; Peter, S.

10.1101/793737 — bioinformatics — Posted on 2019-10-08

3018 Transcriptome Analysis of Desquamative Interstitial Pneumonia (DIP)

Saito, S.; Kolls, J. K.; Liu, Y.; Higashi, Y.; Ohkouchi, S.; Kondoh, Y.; Lasky, J.; Suzuki, T.

10.1101/791350 — molecular biology — Posted on 2019-10-08

3019 Spatial variability in pollen and resource limitation for fruit production of two species in Interior Alaska: Vaccinium uliginosum and V. vitis-idaea

Parkinson, L. V.; Mulder, C. P.

10.1101/796169 — ecology — Posted on 2019-10-08

3020 Representation of Task Structure in Human Hippocampus

Mizrak, E.; Bouffard, N.; Libby, L. A.; Boorman, E.; Ranganath, C.

10.1101/794305 — neuroscience — Posted on 2019-10-08

3021 Female rats consume and prefer oxycodone more than males in a chronic two-bottle oral voluntary choice paradigm

Zanni, G.; DeSalle, M. J.; Deutsch, H. M.; Barr, G. A.; Eisch, A. J.

10.1101/690735 — neuroscience — Posted on 2019-10-08

3022 Default mode network anatomy and function is linked to pediatric concussion recovery

Iyer, K. K.; Zalesky, A.; Barlow, K. M.; Cocchi, L.

10.1101/795740 — neuroscience — Posted on 2019-10-08

3023 Predictive Modeling Achieves High Test-Retest Reliability with Resting State Functional Connectivity

Sripada, C.; Angstadt, M.; Rutherford, S.; Taxali, A.

10.1101/796714 — neuroscience — Posted on 2019-10-08

3024 Individual structural features constrain the mouse functional connectome

Melozzi, F.; Bergmann, E.; Harris, J. A.; Kahn, I.; Jirsa, V.; Bernard, C.

10.1101/613307 — neuroscience — Posted on 2019-10-08

3025 CHANging Consciousness Epistemically (CHANCE): An empirical method to convert subjective content of consciousness to scientific data

Tanaka, D. H.; Tanabe, T.

10.1101/495523 — neuroscience — Posted on 2019-10-08

3026 The Lipid Elongation Enzyme ELOVL2 is a molecular regulator of aging in the retina

Chen, D.; Chao, D. L.; Rocha, L.; Kolar, M.; Nguyen Huu, V. A.; Krawczyk, M.; Dasyani, M.; Wang, T.; Jabari, M.; Jafari, M.; Ross, K. D.; Saghatelian, A.; Hamilton, B. A.; Zhang, K.; Skowronska-Krawczyk, D.

10.1101/795559 — molecular biology — Posted on 2019-10-08

3027 Biofilm structure promotes coexistence of phage-resistant and phage-susceptible bacteria

Simmons, M.; Bond, M. C.; Koskella, B.; Drescher, K.; Bucci, V.; Nadell, C. D.

10.1101/552265 — microbiology — Posted on 2019-10-08

3028 Next-generation sequencing of double stranded RNA is greatly improved by treatment with the inexpensive denaturing reagent DMSO

Wilcox, A. H.; Delwart, E.; Diaz-Munoz, S.

10.1101/644591 — microbiology — Posted on 2019-10-08

3029 Minimally invasive classification of pediatric solid tumors using reduced representation bisulfite sequencing of cell-free DNA: a proof-of-principle study

Van Paemel, R.; De Koker, A.; Vandeputte, C.; van Zogchel, L.; Lammens, T.; Laureys, G.; Vandesompele, J.; Schleiermacher, G.; Chicard, M.; Van Roy, N.; Vicha, A.; Tytgat, G. A. M.; Callewaert, N.; De Preter, K.; De Wilde, B.

10.1101/795047 — genomics — Posted on 2019-10-08

3030 Evolutionary branching in distorted trait spaces

Ito, H. C.; Sasaki, A.

10.1101/794966 — evolutionary biology — Posted on 2019-10-08

3031 The reliability and heritability of cortical folds and their genetic correlations across hemispheres.

10.1101/795591 — genetics — Posted on 2019-10-08

3032 Electrospun cellulose acetate/gelatin nanofibrous wound dressing containing berberine for diabetic foot ulcer healing: in vitro and in vivo studies

Samadian, H.; Ehterami, A.; Farzamfar, S.; Vaez, A.; Khastar, H.; Alam, M.; Ai, A.; Allahyari, Z.; Salehi, M.

10.1101/787093 — bioengineering — Posted on 2019-10-08

3033 The impact of local adaptation and biological invasion on the geographical distribution of Aedes aegypti in Panama

Bennett, K. L.; McMillian, W. O.; Loaiza, J. R.

10.1101/744607 — evolutionary biology — Posted on 2019-10-08

3034 Senescence and entrenchment in evolution of amino acid sites

Stolyarova, A. V.; Nabieva, E.; Ptushenko, V. V.; Favorov, A. V.; Popova, A. V.; Neverov, A. D.; Bazykin, G. A.

10.1101/794743 — evolutionary biology — Posted on 2019-10-08

3035 Early vegetation recovery after the 2008-2009 explosive eruption of the Chaiten Volcano

Moreno Gonzalez, R.; Diaz, I. A.; Christie, D. A.; Coopman, R. E.; Lara, A.

10.1101/746859 — ecology — Posted on 2019-10-08

3036 Frameshifts and wild-type protein sequences are always highly similar because the genetic code is optimal for frameshift tolerance

Wang, X.; Dong, Q.; Chen, G.; Zhang, J.; Liu, Y.; Cai, Y.

10.1101/067736 — genetics — Posted on 2019-10-08

3037 Complex ecological phenotypes on phylogenetic trees: a Markov process model for comparative analysis of multivariate count data

Grundler, M. C.; Rabosky, D. L.

10.1101/640334 — evolutionary biology — Posted on 2019-10-08

3038 Estimating Northern Fur Seal Pup Production: A case study of batch mark abundance estimation

Johnson, D. S.; Towell, R.; Baker, J.

10.1101/772350 — ecology — Posted on 2019-10-08

3039 GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

Jin, J.-J.; Yu, W.-B.; Yang, J.-B.; Song, Y.; dePamphilis, C. W.; Yi, T.-S.; Li, D.-Z.

10.1101/256479 — bioinformatics — Posted on 2019-10-08

3040 Highly expressed maize pollen genes display coordinated expression with neighboring transposable elements and contribute to pollen fitness

Warman, C.; Panda, K.; Vejlupkova, Z.; Hokin, S.; Unger-Wallace, E.; Cole, R. A.; Chettoor, A. M.; Jiang, D.; Vollbrecht, E.; Evans, M. M.; Slotkin, R. K.; Fowler, J. E.

10.1101/796060 — plant biology — Posted on 2019-10-07

3041 Changes in extracellular matrix gene and protein expressions in human trabecular meshwork cells in response to mechanical fluid flow stimulation

Yoshida, K.; Kawai, M.; Utsunomiya, T.; Ishibazawa, A.; Song, Y.-S.; Udo, M. S. B.; Tasaki, Y.; Yoshida, A.

10.1101/796094 — molecular biology — Posted on 2019-10-07

3042 Early conservation benefits of a de facto marine protected area at San Clemente Island, California

Esgro, M. W.; Lindholm, J.; Nickols, K. J.; Bredvik, J.

10.1101/796193 — ecology — Posted on 2019-10-07

3043 Effects of Chinese herbal medicine residues on antibiotic resistance genes and the bacterial community in chicken manure composting

Wu, J.; Li, J.; Chen, J.; Li, D.; Zhang, H.; Li, Z.

10.1101/796086 — ecology — Posted on 2019-10-07

3044 Relationship of sociodemographic and lifestyle factors and diet habits with metabolic syndrome (MetS) in a multi-ethnic Asian population

Iqbal, S. P.; Ramadas, A.; Fatt, Q. K.; Shin, H. L.; Onn, W. Y.; Kadir, K. A.

10.1101/796144 — scientific communication and education — Posted on 2019-10-07

3045 Understanding the factors influencing citizens willingness-to-accept the use of insects to feed poultry, cattle, pig and fish in Brazil

Domingues, C. H. d. F.; Borges, J. A. R.; Ruviaro, C. F.; Gomes Freire Guidolin, D.; Rosa Mauad Carrijo, J.

10.1101/796177 — scientific communication and education — Posted on 2019-10-07

3046 The fodder grass resources for ruminants: A indigenous treasure of local communities of Thal desert Punjab, Pakistan

shaheen, h.; Qureshi, R.; Qaseem, M. F.; Bruschi, P.; listed,

10.1101/796227 — plant biology — Posted on 2019-10-07

3047 Testicular toxicity following chronic codeine administration is via oxidative DNA damage and up-regulation of NO and caspase 3

Ajayi, A. F.; Akhigbe, R. E.

10.1101/796110 — pharmacology and toxicology — Posted on 2019-10-07

3048 Exploring Disturbance as a Force for Good in Motor Learning

Brookes, J.; Mushtaq, F.; Jamieson, E.; Fath, A. J.; Bingham, G.; Culmer, P.; Wilkie, R. M.; Mon-Williams, M.

10.1101/796136 — neuroscience — Posted on 2019-10-07

3049 A new method of recording from the giant fiber of Drosophila melanogaster shows that the strength of its auditory inputs remains constant with age

Blagburn, J. M.

10.1101/796185 — neuroscience — Posted on 2019-10-07

3050 Herpes Simplex Virus type 1 Inflammasome Activation in Human Macrophages is Dependent on NLRP3, ASC, and Caspase-1

Karaba, A. H.; Figueroa, A.; Massaccesi, G.; Botto, S.; DeFilippis, V. R.; Cox, A.

10.1101/796235 — microbiology — Posted on 2019-10-07

3051 Extended-spectrum beta-lactamase antibiotic resistance plasmids have diverse transfer rates and can be spread in the absence of selection

Benz, F.; Huisman, J. S.; Bakkeren, E.; Herter, J. A.; Stadler, T.; Ackermann, M.; Diard, M.; Egli, A.; Hall, A. R.; Hardt, W.-D.; Bonhoeffer, S.

10.1101/796243 — microbiology — Posted on 2019-10-07

3052 Mechanism of interaction of an endofungal bacterium Serratia marcescens D1 with its host and non-host fungi

Hazarika, D. J.; Gautom, T.; Parveen, A.; Goswami, G.; Barooah, M.; Modi, M. K.; Boro, R. C.

10.1101/796102 — microbiology — Posted on 2019-10-07

3053 A mechanistic, stigmergy model of territory formation in asocial animals: Territorial behavior can dampen disease prevalence but increase persistence

White, L. A.; VandeWoude, S.; Craft, M. E.

10.1101/796045 — ecology — Posted on 2019-10-07

3054 Patients with different cancer types are stratified by CBC data

Sadovsky, M. G.; Feller, A.; Martynova, E.; Chernyaev, D.; Semenov, E.; Slepov, E.; Zukov, R.

10.1101/796078 — cancer biology — Posted on 2019-10-07

3055 Zinc-independent activation of Toll-like receptor 4 by S100A9

Loes, A. N.; Shi, R.; Harms, M. J.

10.1101/796219 — biochemistry — Posted on 2019-10-07

3056 Somatic genetics of CDR3 control H-bonds to MHC via V-domain rotational probability (dV) effecting germline CDR2 ‘scanning’ (dθ) of polymorphic MHC

Murray, J.

10.1101/796052 — immunology — Posted on 2019-10-07

3057 A polyclonal allelic expression assay for detecting regulatory effects of transcript variants

Brandt, M.; Gokden, A.; Ziosi, M.; Lappalainen, T.

10.1101/794081 — genetics — Posted on 2019-10-07

3058 Globins and hemogenic cells in the marine Annelid Platynereis dumerilii shed new light on blood evolution in Bilaterians

Song, S.; Starunov, V. V.; Bailly, X.; Ruta, C.; Kerner, P.; Cornelissen, A. J.; Balavoine, G.

10.1101/789214 — evolutionary biology — Posted on 2019-10-07

3059 Multicentric tracking of multiple agents by anterior cingulate cortex during pursuit and evasion

Yoo, S. B. M.; Tu, J. C.; Hayden, B.

10.1101/796375 — neuroscience — Posted on 2019-10-07

3060 Structural basis of cowpox evasion of NKG2D immunosurveillance

Lazear, E.; Sun, M. M.; Wang, X.; Geurs, T. L.; Nelson, C. A.; Campbell, J. A.; Lippold, D.; Krupnick, A. S.; Davis, R. S.; Carayannolpoulos, L. N.; French, A. R.; Fremont, D. H.

10.1101/796862 — immunology — Posted on 2019-10-07

3061 Metabolomic profiling of mouse mammary tumor derived cell lines reveals targeted therapy options for cancer subtypes

Ogrodzinski, M. P.; Lunt, S. Y.

10.1101/796573 — cancer biology — Posted on 2019-10-07

3062 Comprehensive characterization of the mutational landscape in localized anal squamous cell carcinoma

Trilla-Fuertes, L.; Ghanem, I.; Maurel, J.; G-Pastrian, L.; Mendiola, M.; Pena, C.; Lopez-Vacas, R.; Prado-Vazquez, G.; Lopez-Camacho, E.; Zapater-Moros, A.; Heredia, V.; Cuatrecasas, M.; Garcia-Alfonso, P.; Capdevila, J.; Conill, C.; Garcia-Carbonero, R.; Heath, K.; Ramos-Ruiz, R.; Llorens, C.; Campos-Barros, A.; Gamez-Pozo, A.; Feliu, J.; Fresno, J. A.

10.1101/796367 — cancer biology — Posted on 2019-10-07

3063 Spans attributed to short-term memory are explained by sensitivity to long-term statistics in both musicians and individuals with dyslexia

Kimel, E.; Hai Weiss, A.; Jakoby, H.; Daikhin, L.; Ahissar, M.

10.1101/795385 — neuroscience — Posted on 2019-10-07

3064 Late- but not early-onset blindness impairs the development of audio-haptic multisensory integration

Scheller, M.; Proulx, M. J.; de Haan, M.; Dahlmann-Noor, A.; Petrini, K.

10.1101/795500 — neuroscience — Posted on 2019-10-07

3065 Maternal immune activation in rats is associated with a lower number of dopamine receptor 3-expressing granulocytes in the male offspring with no alterations in cocaine reward, resistance to extinction or cue-induced reinstatement

Santos-Toscano, R.; Ucha, M.; Borcel, E.; Ambrosio, E.; Higuera-Matas, A.

10.1101/796425 — neuroscience — Posted on 2019-10-07

3066 A Study of Association of ABO Blood Group types with Cancer Risk

Singh, V.; Yadav, U.; Rai, V.; Kumar, P.

10.1101/796284 — genetics — Posted on 2019-10-07

3067 Nanopatterned Thermoresponsive Functionalization of Substrates via Nanosphere Lithography

Mireles, M.; Soule, C. W.; Delgadillo, L. F.; Gaborski, T. R.

10.1101/796268 — bioengineering — Posted on 2019-10-07

3068 Introducing ExHiBITT - Exploring Host microbiome inTeractions in Twins-, a colon multiomic cohort study

Mora-Ortiz, M.; Ibraheim, H.; Hermangild Kottoor, S.; Bowyer, R.; Metrustry, S.; Sanderson, J.; Powell, N.; Spector, T. D.; Small, K. S.; Steves, C. J.

10.1101/795070 — systems biology — Posted on 2019-10-07

3069 Storage root yield of sweetpotato as influenced by sweetpotato leaf curl virus and its interaction with sweetpotato feathery mottle virus, and sweetpotato chlorotic stunt virus in Kenya

Wanjala, B. W.; Ateka, E. M.; Miano, D. W.; Low, J. W.; Kreuze, J. F.

10.1101/795518 — plant biology — Posted on 2019-10-07

3070 Sensitization of knee-innervating sensory neurons by tumor necrosis factor-α activated fibroblast-like synoviocytes: an in vitro, co-culture model of inflammatory pain

Chakrabarti, S.; Pattison, L. A.; Bhebhe, C. N.; Callejo, G.; Bulmer, D. C.; Smith, E. S. J.

10.1101/791251 — neuroscience — Posted on 2019-10-07

3071 Neuronal activity in the premotor cortex of monkeys reflects both cue salience and motivation for action generation and inhibition

Giamundo, M.; Giarrocco, F.; Brunamonti, E.; Fabbrini, F.; Pani, P.; Ferraina, S.

10.1101/796417 — neuroscience — Posted on 2019-10-07

3072 Activation and inhibition of nonsense-mediated mRNA decay controls the abundance of alternative polyadenylation products

Kishor, A.; Fritz, S. E.; Haque, N.; Zhu, J.; Yang, W.; Hogg, J. R.

10.1101/794719 — molecular biology — Posted on 2019-10-07

3073 Discovery and Optimization of Inhibitors for the Pup Proteasome System in Mycobacterium tuberculosis

Janssen, G.; Merkx, R.; Zhang, S.; Schiesswohl, C.; Chatterjee, C.; Darwin, H.; Ovaa, H.

10.1101/796359 — microbiology — Posted on 2019-10-07

3074 Chi.Bio: An open-source automated experimental platform for biological science research

Steel, H.; Habgood, R.; Kelly, C.; Papachristodoulou, A.

10.1101/796516 — bioengineering — Posted on 2019-10-07

3075 Amino Acid Requirements of the Chinese Hamster Ovary Cell Metabolism during Recombinant Protein Production

Traustason, B.

10.1101/796490 — systems biology — Posted on 2019-10-07

3076 Intersubject consistent dynamic connectivity during natural vision revealed by functional MRI

Di, X.; Biswal, B. B.

10.1101/796433 — neuroscience — Posted on 2019-10-07

3077 Astrocyte redox dysregulation causes prefrontal hypoactivity: sulforaphane treats non-ictal pathophysiology in ALDH7A1-mediated epilepsy

Faust, T. E.; Xin, W.; Lee, B. J.; Agarwal, A.; Saha, S.; Palen, T.; Cash-Padgett, T.; Wood, D.; Bonci, A.; Fahey, J. W.; Jaaro-Peled, H.; Bergles, D. E.; Sawa, A.

10.1101/796474 — neuroscience — Posted on 2019-10-07

3078 A proximity biotinylation map of a human cell

Go, C. D.; Knight, J. D. R.; Rajasekharan, A.; Rathod, B.; Hesketh, G. G.; Abe, K. T.; Youn, J.-Y.; Samavarchi-Tehrani, P.; Zhang, H.; Zhu, L. Y.; Popiel, E.; Lambert, J.-P.; Coyaud, E.; Cheung, S. W. T.; Rajendran, D.; Wong, C. J.; Antonicka, H.; Pelletier, L.; Raught, B.; Palazzo, A. F.; Shoubridge, E. A.; Gingras, A.-C.

10.1101/796391 — molecular biology — Posted on 2019-10-07

3079 A topological analysis of difference topology experiments of condensin with Topoisomerases II

Kim, S.; Darcy, I. K.

10.1101/795898 — molecular biology — Posted on 2019-10-07

3080 Running rabid: modelling of European bat lyssavirus (EBLV) pathways in a bat population

Breeze, C.; Aegerter, J. C.; Smith, G. C.

10.1101/795856 — ecology — Posted on 2019-10-07

3081 Human CardioChimeras: Creation of a Novel \"Next Generation\" Cardiac Cell

Firouzi, F.; Sinha Choudhury, S.; Broughton, K.; Salazar, A.; Sussman, M.

10.1101/796870 — cell biology — Posted on 2019-10-07

3082 Mitogen-independent cell cycle progression in B lymphocytes

Singh, A.; Spitzer, M. H.; Joy, J. P.; Kaileh, M.; Qiu, X.; Nolan, G. P.; Sen, R.

10.1101/796904 — cell biology — Posted on 2019-10-07

3083 Abundant α-Synuclein compact dimers

Zaer, S.; Drori, P.; Lebendiker, M.; Razvag, Y.; Lerner, E.

10.1101/795997 — biophysics — Posted on 2019-10-07

3084 Dynamic light experiments and semi-automated plant phenotyping enabled by self-built growth racks and simple upgrades to the IMAGING-PAM

Schneider, D.; Lopez, L. S.; Li, M.; Crawford, J. D.; Kirchhoff, H.; Kunz, H.-H.

10.1101/795476 — plant biology — Posted on 2019-10-07

3085 SpikeInterface, a unified framework for spike sorting

Buccino, A. P.; Hurwitz, C. L.; Magland, J.; Garcia, S.; Siegle, J. H.; Hurwitz, R.; Hennig, M. H.

10.1101/796599 — neuroscience — Posted on 2019-10-07

3086 Chemogenetic inhibition in the dorsal striatum reveals regional specificity of direct and indirect pathway control of action sequencing.

Garr, E.; Delamater, A. R.

10.1101/796698 — neuroscience — Posted on 2019-10-07

3087 Stable task information from an unstable neural population

Loback, A.; Rule, M. E.; Raman, D. V.; Driscoll, L. N.; Harvey, C. D.; O'Leary, T.

10.1101/796334 — neuroscience — Posted on 2019-10-07

3088 Oncogenic role of FGFR1 and vulnerability of RBL2-FGFR1 axis in small cell lung cancer development

Kim, K.-B.; Kim, Y.; Kim, D.-W.; Park, K.-S.

10.1101/796607 — cancer biology — Posted on 2019-10-07

3089 Persistent Prolate Polymersomes for Enhanced Co-Delivery of Hydrophilic and Hydrophobic Drugs

L'Amoreaux, N.; Ali, A.; Iqbal, S.; Larsen, J.

10.1101/796201 — bioengineering — Posted on 2019-10-07

3090 Selectivity and engineering of the sialoglycan-binding spectrum in Siglec-like adhesins

Bensing, B.; Loukachevitch, L. V.; Agarwal, R.; Yamakawa, I.; Luong, K.; Hadadianpour, A.; Yu, H.; Fialkowski, K.; Castro, M.; Wawrzak, Z.; Chen, X.; Baudry, J.; Smith, J.; Sullam, P.; Iverson, T. M.

10.1101/796912 — biochemistry — Posted on 2019-10-07

3091 A Novel Optimization-Based Tool to Automate Infeasible Cycle-Free Gapfilling of Genome-Scale Metabolic Models

Schroeder, W. L.; Saha, R.

10.1101/796706 — systems biology — Posted on 2019-10-07

3092 A detailed graphical and computational model of the mammalian renal circadian clock

Ivy, J. R.; Shih, B.; Hogenesch, J. J.; Mullins, J. J.; Freeman, T. C.

10.1101/795906 — systems biology — Posted on 2019-10-07

3093 Active inference under intersensory conflict: Simulation and empirical results

Limanowski, J.; Friston, K.

10.1101/795419 — neuroscience — Posted on 2019-10-07

3094 Reduced Influence of Perceptual Context in Schizophrenia: Behavioral and Neurophysiological Evidence

Pokorny, V.; Lano, T. J.; Schallmo, M.-P.; Olman, C. A.; Sponheim, S. R.

10.1101/795534 — neuroscience — Posted on 2019-10-07

3095 Predictive Modeling Achieves High Test-Retest Reliability with Resting State Functional Connectivity

Sripada, C.; Angstadt, M.; Rutherford, S.; Taxali, A.

10.1101/796714 — neuroscience — Posted on 2019-10-07

3096 Cryo-EM Structures of the XPF-ERCC1 Endonuclease Reveal an Auto-Inhibited Conformation and the Basis for Activation

Jones, M. L.; Beuron, F.; Borg, A.; Nans, A.; Earl, C.; Briggs, D. C.; Bowles, M.; Morris, E. P.; Linch, M.; McDonald, N. Q.

10.1101/796524 — molecular biology — Posted on 2019-10-07

3097 In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with Autism risk genes

Jin, X.; Simmons, S. K.; Guo, A. X.; Shetty, A. S.; Ko, M.; Nguyen, L.; Robinson, E. B.; Oyler, P.; Curry, N.; Deangeli, G.; Lodato, S.; Levin, J. Z.; Regev, A.; Zhang, F.; Arlotta, P.

10.1101/791525 — genomics — Posted on 2019-10-07

3098 Agent-based Modeling of Asian Corn Borer Resistance to BT Corn

Jacildo, A. J.; Rabajante, J. F.; Alcantara, E. P.

10.1101/795724 — evolutionary biology — Posted on 2019-10-07

3099 Three-dimensional super-resolution fluorescence imaging of DNA

Yardimci, S.; Burnham, D. R.; Terry, S. Y. A.; Yardimci, H.

10.1101/796151 — biophysics — Posted on 2019-10-07

3100 Testing gene-environment interactions for rare and/or common variants in sequencing association studies

Zhao, Z.; Zhang, J.; Sha, Q.; Hao, H.

10.1101/796540 — bioinformatics — Posted on 2019-10-07

3101 Qualitative and quantitative analyses of tree forking habit with single-image photogrammetry: a case study of old-growth temperate oaks in a mixed, deciduous forest remnant near Krakow, Poland

Kedra, K. W.

10.1101/795286 — plant biology — Posted on 2019-10-07

3102 Epigenetic contributions to hemisphere asymmetry in healthy brain, aging, and Parkinson’s disease

Li, P.; Ensink, E.; Lang, S.; Marshall, L.; Schilthuis, M.; Lamp, J.; Vega, I.; Labrie, V.

10.1101/794255 — neuroscience — Posted on 2019-10-07

3103 Assessment of phylo-functional coherence along the bacterial phylogeny and taxonomy

Parras-Molto, M.; Aguirre de Carcer, D.

10.1101/795914 — microbiology — Posted on 2019-10-07

3104 Minimally invasive classification of pediatric solid tumors using reduced representation bisulfite sequencing of cell-free DNA: a proof-of-principle study

10.1101/795047 — genomics — Posted on 2019-10-07

3105 Brain rhythms shift and deploy attention

Richter, C. G.; Bosman, C. A.; Vezoli, J.; Schoffelen, J.-M.; Fries, P.

10.1101/795567 — neuroscience — Posted on 2019-10-07

3106 Comparison of beamformer implementations for MEG source localization

Jaiswal, A. K.; Nenonen, J.; Stenroos, M.; Gramfort, A.; Dalal, S. S.; Westner, B. U.; Litvak, V.; Mosher, J. C.; Schoffelen, J. M.; Witton, C.; Oostenveld, R.; Parkkonen, L.

10.1101/795799 — neuroscience — Posted on 2019-10-07

3107 Long-range interhemispheric projection neurons show biased response properties and fine-scale local subnetworks in mouse visual cortex

Hagihara, K. M.; Ishikawa, A. W.; Yoshimura, Y.; Tagawa, Y.; Ohki, K.

10.1101/795922 — neuroscience — Posted on 2019-10-07

3108 Atypical processing of uncertainty in individuals at risk for psychosis

Cole, D. M.; Diaconescu, A. O.; Pfeiffer, U. J.; Brodersen, K. H.; Mathys, C. D.; Julkowski, D.; Ruhrmann, S.; Schilbach, L.; Tittgemeyer, M.; Vogeley, K.; Stephan, K. E.

10.1101/796300 — neuroscience — Posted on 2019-10-07

3109 Multi-scale spatial genetic structure of a vector-borne plant pathogen in orchards and wild habitat

Marie-Jeanne, V.; Bonnot, F.; Thebaud, G.; Peccoud, J.; Labonne, G.; Sauvion, N.

10.1101/795096 — ecology — Posted on 2019-10-07

3110 Phenylethynylbenzyl-Modified Biguanides Inhibit Pancreatic Cancer Tumor Growth

Hebert, A.; Parisotto, M.; Rowell, M.-C.; Dore, A.; Fernandez, A.; Lefrancois, G.; Kalegari, P.; Ferbeyre, G.; Schmitzer, A.

10.1101/793109 — cancer biology — Posted on 2019-10-07

3111 MYPT1 O-GlcNAcylation Dictates Timely Disjunction of Centrosomes

Liu, C.; Shi, Y.; Liu, X.; Xiahou, Z.; Li, J.; Tan, Z.; Chen, X.; Li, J.

10.1101/795674 — biochemistry — Posted on 2019-10-07

3112 Metagenomic discovery and co-infection of diverse wobbly possum disease viruses and novel hepaciviruses in Australian brushtail possums

Chang, W.-S.; Eden, J.-S.; Rose, K.; Shi, M.; Holmes, E. C.

10.1101/795336 — pathology — Posted on 2019-10-07

3113 Default mode network anatomy and function is linked to pediatric concussion recovery

Iyer, K. K.; Zalesky, A.; Barlow, K. M.; Cocchi, L.

10.1101/795740 — neuroscience — Posted on 2019-10-07

3114 Electroencephalographic evidence for the involvement of mirror neuron and error monitoring related processes in virtual body ownership

Raz, G.; Gurevitch, G.; Vaknin, T.; Aazamy, A.; Gefen, I.; Grunstein, S.; Azouri, G.; Goldway, N.

10.1101/795773 — neuroscience — Posted on 2019-10-07

3115 Thetaburst TMS to the posterior superior temporal sulcus decreases resting-state fMRI connectivity across the face processing network

Handwerker, D. A.; Ianni, G.; Gutierrez, B.; Roopchansingh, V.; Gonzalez-Castillo, J. A.; Chen, G.; Bandettini, P. A.; Ungerleider, L. G.; Pitcher, D.

10.1101/794578 — neuroscience — Posted on 2019-10-07

3116 Human Reference Genome and a High Contiguity Ethnic Genome AK1

Kim, J.; Sung, J.; Han, K.; Lee, W.; Mun, S.; Lee, J.; Bahk, K.; Yang, I.; Bae, Y.-K.; Kim, C.; Kim, J.-i.; Seo, J.

10.1101/795807 — genomics — Posted on 2019-10-07

3117 The SAMPL6 SAMPLing challenge: Assessing the reliability and efficiency of binding free energy calculations

Rizzi, A.; Jensen, T.; Slochower, D. R.; Aldeghi, M.; Gapsys, V.; Ntekoumes, D.; Bosisio, S.; Papadourakis, M.; Henriksen, N. M.; de Groot, B. L.; Cournia, Z.; Dickson, A.; Michel, J.; Gilson, M. K.; Shirts, M. R.; Mobley, D. L.; Chodera, J. D.

10.1101/795005 — biophysics — Posted on 2019-10-07

3118 GenomeQC: A quality assessment tool for genome assemblies and gene structure annotations

Manchanda, N.; Lawrence-Dill, C. J.; Hufford, M.; Andorf, C. M.; Woodhouse, M. R.; Seetharam, A.; Portwood, J. L.

10.1101/795237 — bioinformatics — Posted on 2019-10-07

3119 CodAn: predictive models for the characterization of mRNA transcripts in Eukaryotes

Nachtigall, P. G.; Kashiwabara, A. Y.; Durham, A. M.

10.1101/794107 — bioinformatics — Posted on 2019-10-07

3120 GiniClust3: a fast and memory-efficient tool for rare cell type identification

Dong, R.; Yuan, G.-C.

10.1101/788554 — bioinformatics — Posted on 2019-10-07

3121 Non-Canonical Binding of a Small Molecule to Sortilin Alters Cellular Trafficking of ApoB and PCSK9 in Liver Derived Cells

Sparks, R. P.; Arango, A. S.; Aboff, Z. L.; Jenkins, J. L.; Guida, W. C.; Tajkhorshid, E.; Sparks, C. E.; Sparks, J. D.; Fratti, R. A.

10.1101/795658 — biochemistry — Posted on 2019-10-07

3122 Mechanism of RPA-Facilitated Processive DNA Unwinding by the Eukaryotic CMG Helicase

Kose, H. B.; Xie, S.; Cameron, G.; Strycharska, M. S.; Yardimci, H.

10.1101/796003 — biochemistry — Posted on 2019-10-07

3123 Chimpanzees use advanced spatial cognition to plan least-cost routes

Green, S. J.; Boruff, B. J.; Grueter, C. C.

10.1101/793562 — animal behavior and cognition — Posted on 2019-10-07

3124 From ridge tops to ravines: landscape drivers of chimpanzee ranging patterns

Green, S. J.; Boruff, B. J.; Grueter, C. C.

10.1101/795393 — animal behavior and cognition — Posted on 2019-10-07

3125 Exact calculation of stationary solution and parameter sensitivity analysis of stochastic continuous time Boolean models

Koltai, M.; Noel, V.; Zinovyev, A.; Calzone, L.; Barillot, E.

10.1101/794230 — systems biology — Posted on 2019-10-07

3126 Stable neutralization of virulent bacteria using temperate phage in the mammalian gut

Hsu, B.; Way, J. C.; Silver, P. A.

10.1101/794222 — synthetic biology — Posted on 2019-10-07

3127 New North American isolates of Venturia inaequalis can overcome apple scab resistance of Malus floribunda 821

Papp, D.; Singh, J.; Gadoury, D.; Khan, A.

10.1101/794636 — pathology — Posted on 2019-10-07

3128 Evolution of crab eye structures and the utility of ommatidia morphology in resolving phylogeny

Luque, J.; Allison, W. T.; Bracken-Grissom, H. D.; Jenkins, K. M.; Palmer, A. R.; Porter, M. L.; Wolfe, J. M.

10.1101/786087 — paleontology — Posted on 2019-10-07

3129 Serotonin depletion amplifies distinct human social emotions as a function of individual differences in personality

Kanen, J. W.; Arntz, F. E.; Yellowlees, R.; Cardinal, R. N.; Price, A.; Christmas, D. M.; Apergis-Schoute, A. M.; Sahakian, B. J.; Robbins, T. W.

10.1101/789669 — neuroscience — Posted on 2019-10-07

3130 Structural controllability predicts functional patterns and neuromodulatory benefits associated with working memory

Beynel, L.; Deng, L.; Crowell, C.; Dannhauer, M.; Palmer, H.; Hilbig, S.; Peterchev, A. V.; Luber, B.; Lisanby, S. H.; Cabeza, R.; Appelbaum, L. G.; Davis, S. W.

10.1101/794388 — neuroscience — Posted on 2019-10-07

3131 Sub-species niche specialization in the oral microbiome is associated with nasopharyngeal carcinoma risk in an endemic area of southern China

Debelius, J. W.; Huang, T.; Cai, Y.; Ploner, A.; Barrett, D.; Zhou, X.; Xiao, X.; Li, Y.; Liao, J.; Zheng, Y.; Huang, G.; Adami, H.-O.; Zeng, Y.; Zhang, Z.; Ye, W.

10.1101/782417 — microbiology — Posted on 2019-10-07

3132 The reliability and heritability of cortical folds and their genetic correlations across hemispheres.

10.1101/795591 — genetics — Posted on 2019-10-07

3133 ATR16 Syndrome: Mechanisms Linking Monosomy to Phenotype

Babbs, C.; Brown, J.; Horsley, S. W.; Slater, J.; Maifoshie, E.; Kumar, S.; Ooijevaar, P.; Kriek, M.; Dixon-McIver, A.; Harteveld, C. L.; Traeger-Synodinos, J.; Higgs, D.; Buckle, V. J.

10.1101/768895 — genetics — Posted on 2019-10-07

3134 Reduction of insulin/IGF-1 receptor rejuvenates immunity via positive feedback circuit

Lee, Y.; Jeong, D.-E.; Hwang, W.; Ham, S.; Park, H.-E.; Kwon, S.; Jung, Y.; Ashraf, J. M.; Murphy, C.; Lee, S.-J. V.

10.1101/795781 — genetics — Posted on 2019-10-07

3135 Evolution of Gene Expression and Splicing in Parallel Cold-Adapted Fly Populations

Huang, Y.; Lack, J. B.; Hoppel, G. T.; Pool, J. E.

10.1101/795716 — evolutionary biology — Posted on 2019-10-07

3136 Evolutionary analyses guide selection of model systems to investigate proto-oncogene function in ALK and LTK

Wang, Z.; Dornburg, A.; Wang, J.; Elizabeth, M.; Lopez-Giraldez, F.; Townsend, J. P.

10.1101/795468 — cancer biology — Posted on 2019-10-07

3137 Establishing the baseline for using plankton as biosensor

Pastore, V. P.; Zimmerman, T.; Biswas, S.; Bianco, S.

10.1101/795203 — bioengineering — Posted on 2019-10-07

3138 Unveiling cryptic diversity among Mullerian co-mimics: insights from the Western Palaearctic Syntomis moths (Lepidoptera: Erebidae)

Chiocchio, A.; Arduino, P.; Cianchi, R.; Canestrelli, D.; Zilli, A.

10.1101/794602 — zoology — Posted on 2019-10-07

3139 The Lipid Elongation Enzyme ELOVL2 is a molecular regulator of aging in the retina

Skowronska-Krawczyk, D.; Chen, D.; Chao, D. L.; Rocha, L.; Kolar, M.; Nguyen Huu, V. A.; Krawczyk, M.; Dasyani, M.; Wang, T.; Jabari, M.; Jafari, M.; Ross, K. D.; Saghatelian, A.; Hamilton, B. A.; Zhang, K.

10.1101/795559 — molecular biology — Posted on 2019-10-07

3140 The usage of six human IGHJ genes follows a particular nonrandom selection: The recombination signal sequence affects the usage frequency of six human IGHJ genes

Shi, B.; Dong, X.; Ma, Q.; Sun, S.; Ma, L.; Yu, J.; Wang, X.; Pan, J.; He, X.; Su, D.; Yao, X.

10.1101/792085 — genomics — Posted on 2019-10-07

3141 Single-cell ATAC-seq Signal Extraction and Enhancement with SCATE

Ji, Z.; Zhou, W.; Ji, H.

10.1101/795609 — genomics — Posted on 2019-10-07

3142 A Genotype Concordance Study between Consumer Genetic Testing Services

Batra, P.; Huang, K.-l.

10.1101/795666 — genetics — Posted on 2019-10-07

3143 Dynamical Systems Modeling of Bt Resistant Cornborer Population Dynamics

Rabajante, J. F.; Jacildo, A. J.; Alcantara, E. C.

10.1101/795682 — evolutionary biology — Posted on 2019-10-07

3144 Amitosis confers benefits of sex in the absence of sex to Tetrahymena

Zhang, H.; West, J. A.; Zufall, R. A.; Azevedo, R. B. R.

10.1101/794735 — evolutionary biology — Posted on 2019-10-07

3145 A global indicator of the capacity of terrestrial ecosystems to retain biological diversity under climate change: the Bioclimatic Ecosystem Resilience Index

Ferrier, S.; Harwood, T. D.; Ware, C.; Hoskins, A. J.

10.1101/795377 — ecology — Posted on 2019-10-07

3146 Platinum chemotherapy induces lymphangiogenesis to prime tissues for tumor metastasis

Harris, A. R.; Azimi, M. S.; Cornelison, R.; Azar, F. N.; Llaneza, D. C.; Belanger, M.; Mathew, A.; Tkachenko, S.; Esparza, S.; Perez, M. J.; Buchta Rosean, C.; Bostic, R.; Cornelison, R. C.; Tate, K. M.; Peirce-Cottler, S. M.; Paquette, C.; Mills, A.; Landen, C. N.; Saucerman, J.; Dillon, P. M.; Pompano, R. R.; Rutkowski, M. A.; Munson, J.

10.1101/781443 — cancer biology — Posted on 2019-10-07

3147 Coexistence of lipid phases stabilizes interstitial water in the outer layer of mammalian skin

MacDermaid, C. M.; Hall, K. W.; DeVane, R. H.; Klein, M. L.; Fiorin, G.

10.1101/786699 — biophysics — Posted on 2019-10-07

3148 Bayesian Linear Mixed Models for Motif Activity Analysis

Lederer, S. I.; Heskes, T.; van Heeringen, S. J.; Albers, C.

10.1101/782615 — bioinformatics — Posted on 2019-10-07

3149 Noise propagation shapes condition-dependent gene expression noise in Escherichia coli

Urchueguia, A.; Galbusera, L.; Bellement-Theroue, G.; Julou, T.; van Nimwegen, E. J.

10.1101/795369 — systems biology — Posted on 2019-10-07

3150 Semantic Reversal Anomalies under the Microscope: Task and Modality Influences on Language-Related ERP components

Kyriaki, L.; Schlesewsky, M.; Bornkessel-Schlesewsky, I.

10.1101/788976 — neuroscience — Posted on 2019-10-07

3151 Finding the neural correlates of collaboration using a three-person fMRI hyperscanning paradigm

Xie, H.; Howell, A.; Schreier, M.; Sheau, K.; Manchanda, M.; Ayub, R.; Glover, G.; Jung, M.; Reiss, A. L.; Saggar, M.

10.1101/782870 — neuroscience — Posted on 2019-10-07

3152 Calcium Imaging Reveals Host-Graft Synaptic Network Formation in Spinal Cord Injury

Ceto, S.; Sekiguchi, K. J.; Takashima, Y.; Nimmerjahn, A.; Tuszynski, M. H.

10.1101/795583 — neuroscience — Posted on 2019-10-07

3153 FB5P-seq: FACS-based 5-prime end single-cell RNAseq for integrative analysis of transcriptome and antigen receptor repertoire in B and T cells

Attaf-Bouabdallah, N.; Cervera-Marzal, I.; Dong, C.; Gil, L.; Renand, A.; Spinelli, L.; Milpied, P.

10.1101/795575 — immunology — Posted on 2019-10-07

3154 Sexual dimorphism and the effect of wild introgressions on recombination in Manihot esculenta

Chan, A. W.; Williams, A. L.; Jannink, J.-L.

10.1101/794339 — genomics — Posted on 2019-10-07

3155 Benchmarking bacterial genome-wide association study (GWAS) methods using simulated genomes and phenotypes

Saber, M. M.; Shapiro, B. J.

10.1101/795492 — genomics — Posted on 2019-10-07

3156 Regional differences in gene regulation may underlie patterns of sensitivity to novel insecticides in Colorado potato beetle

Hawthorne, D. J.; Crossley, M. S.; Schoville, S. D.; Steinhauer, N.; Dively, G. P.

10.1101/794446 — evolutionary biology — Posted on 2019-10-07

3157 Paulinella micropora KR01 holobiont genome assembly for studying primary plastid evolution

Lhee, D.; Lee, J.; Cho, C. H.; Ha, J.-S.; Jeong, S. E.; Jeon, C. O.; Zelzion, U.; Price, D. C.; Chan, Y.-F.; Gabr, A.; Bhattacharya, D.; Yoon, H. S.

10.1101/794941 — evolutionary biology — Posted on 2019-10-07

3158 Integrative modelling of the full-length human dehydrodolichyl diphosphate synthase using a hybrid computational and experimental approach

Lisnyansky Barel, M.; Lee, S. Y.; Ki, A. Y.; Kapelushnik, N.; Loewenstein, A.; Chung, K. Y.; Schneidman-Duhovny, D.; Giladi, M.; Newman, H.; Haitin, Y.

10.1101/787119 — biophysics — Posted on 2019-10-07

3159 Multi Epitope Vaccine Prediction Against Aichi Virus using Immunoinformatic Approach

Ali, A.; Mohamed, S. A.; Musa, M. A.; ELtahier, A. F.; Abdelrahman Ali, W. M.; Ibrahim, E. A.; Hassan, M. A. S.

10.1101/795427 — bioinformatics — Posted on 2019-10-07

3160 Knowledge-primed neural networks enable biologically interpretable deep learning on single-cell sequencing data

Fortelny, N.; Bock, C.

10.1101/794503 — bioinformatics — Posted on 2019-10-07

3161 Observations on the interactions of mammals and birds with badger (Meles meles) dung pits at a site used by a single social group in an urban area

Hughes, M.; Brown, S.

10.1101/795484 — animal behavior and cognition — Posted on 2019-10-07

3162 Gene balance predicts transcriptional responses immediately following ploidy change in Arabidopsis thaliana

Potter, B. I.; Song, M. J.; Doyle, J. J.; Coate, J. E.

10.1101/795328 — plant biology — Posted on 2019-10-07

3163 Sensitivity to gains during risky decision-making differentiates chronic cocaine users from stimulant-naive controls

Schiavon, B. K.; Kexel, A.-K.; Manenti, G.; Cole, D.; Baumgartner, M.; Oliveira, R. G.; Tobler, P.; Quednow, B.

10.1101/795443 — neuroscience — Posted on 2019-10-07

3164 Senescence and entrenchment in evolution of amino acid sites

Stolyarova, A. V.; Nabieva, E.; Ptushenko, V. V.; Favorov, A. V.; Popova, A. V.; Alexey, N. D.; Bazykin, G. A.

10.1101/794743 — evolutionary biology — Posted on 2019-10-07

3165 PRC2 bridges non-adjacent nucleosomes to establish heterochromatin

Leicher, R.; Ge, E. J.; Lin, X.; Reynolds, M. J.; Walz, T.; Zhang, B.; Muir, T. W.; Liu, S.

10.1101/795260 — biophysics — Posted on 2019-10-07

3166 PlasClass improves plasmid sequence classification

Pellow, D.; Mizrahi, I.; Shamir, R.

10.1101/783571 — bioinformatics — Posted on 2019-10-07

3167 A plant host enables the heterologous production and combinatorial study of fungal lignin-degrading enzymes

Khlystov, N. A.; Yoshikuni, Y.; Deutsch, S.; Sattely, E. S.

10.1101/794834 — bioengineering — Posted on 2019-10-07

3168 A Sense of Place: Transcriptomics Identifies Environmental Signatures in Cabernet Sauvignon Berry Skins in the Late Stages of Ripening.

Cramer, G. R.; Cochetel, N.; Ghan, R.; Destrac-Irvine, A.; Delrot, S.

10.1101/729236 — plant biology — Posted on 2019-10-07

3169 Context-invariant neural dynamics underlying the encoding of Bayesian uncertainty, but not confidence

Fiore, V. G.; Gu, X.

10.1101/794669 — neuroscience — Posted on 2019-10-07

3170 Replacement of microglia by monocyte-derived macrophages prevents long-term memory deficits after therapeutic irradiation

Feng, X.; Chen, D.; Gupta, S.; Boosalis, Z.; Liu, S.; Gupta, N.; Rosi, S.

10.1101/794354 — neuroscience — Posted on 2019-10-07

3171 Effect of Geometric Sharpness on Translucent Material Perception

Xiao, B.; Zhao, S.; Gkioulekas, I.; Bi, W.; Bala, K.

10.1101/795294 — neuroscience — Posted on 2019-10-07

3172 Class I histone deacetylase HDA-3 is required for full maintenance of locomotor ability in Caenorhabditis elegans

Kawamura, K.; Maruyama, I. N.

10.1101/794974 — genetics — Posted on 2019-10-07

3173 Evolutionary branching in distorted trait spaces

Ito, H. C.; Sasaki, A.

10.1101/794966 — evolutionary biology — Posted on 2019-10-07

3174 Light exposure decreases infectivity of the Daphnia parasite Pasteuria ramosa

Overholt, E. P.; Duffy, M. A.; Meeks, M. P.; Leach, T. H.; Williamson, C. E.

10.1101/789628 — ecology — Posted on 2019-10-07

3175 Deep Active Lesion Segmentation

Hatamizadeh, A.; Hoogi, A.; Sengupta, D.; Lu, W.; Wilcox, B.; Rubin, D.; Terzopoulos, D.

10.1101/794529 — bioengineering — Posted on 2019-10-07

3176 A YoeB toxin from A. tumefaciens has metal-dependent DNA cleaving activity

Bourne, C. R.; Reddem, E.; Murphy, T.; Ames, J. R.; McGillick, J.

10.1101/795211 — biochemistry — Posted on 2019-10-07

3177 Stable and dynamic representations of value in the prefrontal cortex

Enel, P.; Wallis, J.; Rich, E.

10.1101/794685 — neuroscience — Posted on 2019-10-07

3178 Noninvasive Sleep Scoring in Mice using Electric Field Sensors

Kloefkorn, H.; Aiani, L. M.; Lakhani, A.; Nagesh, S.; Moss, A.; Goolsby, W.; Rehg, J.; Pedersen, N. P.; Hochman, S.

10.1101/794552 — neuroscience — Posted on 2019-10-07

3179 The norepinephrine transporter regulates dopamine-dependent synaptic plasticity in the mouse dorsal hippocampus

Sonneborn, A. J.; Greene, R. W.

10.1101/793265 — neuroscience — Posted on 2019-10-07

3180 Molecular and histologic outcomes following spinal cord injury in spiny mice, Acomys cahirinus

Streeter, K. A.; Sunshine, M. D.; Brant, J. O.; Sandoval, A. G. W.; Maden, M.; Fuller, D. D.

10.1101/793133 — neuroscience — Posted on 2019-10-07

3181 Optimizing a human fecal assay that elicits bacterial swarming

Byju, A.; Patel, D.; Chen, W.; Mani, S.

10.1101/794487 — microbiology — Posted on 2019-10-07

3182 Intragenic Recombination Influences Rotavirus Diversity and Evolution

Hoxie, I.; Dennehy, J. J.

10.1101/794826 — evolutionary biology — Posted on 2019-10-07

3183 The Impact of Glyphosate-Based Herbicides and Their Components on Daphnia Magna

Duan, K. R.; Kish, A.; Kish, L.; Faletra, P.; Salmon, K.

10.1101/794156 — ecology — Posted on 2019-10-07

3184 A Joint Model of RNA Expression and Surface Protein Abundance in Single Cells

Gayoso, A.; Lopez, R.; Steier, Z. R.; Regier, J.; Streets, A. M.; Yosef, N.

10.1101/791947 — bioinformatics — Posted on 2019-10-07

3185 Detecting Zero-Inflated Genes in Single-Cell Transcriptomics Data

Clivio, O.; Lopez, R.; Regier, J.; Gayoso, A.; Jordan, M. I.; Yosef, N.

10.1101/794875 — bioinformatics — Posted on 2019-10-07

3186 A Machine Learning Approach to Predict Hypotensive Events in ICU Settings

Chookhachizadeh Moghadam, M.; Masoumi, E.; Bagherzadeh, N.; Ramsingh, D.; Li, G.-P.; Kain, Z. N.

10.1101/794768 — bioengineering — Posted on 2019-10-07

3187 Orbitofrontal control of visual cortex gain promotes visual associative learning

Liu, D.; Deng, J.; Zhang, Z.; Zhang, Z.-Y.; Sun, Y.-G.; Yang, T.; Yao, H.

10.1101/794958 — neuroscience — Posted on 2019-10-07

3188 Determinants of telomere length across human tissues

Demanelis, K.; Jasmine, F.; Chen, L. S.; Chernoff, M.; Tong, L.; Shinkle, J.; Sabarinathan, M.; Lin, H.; Ramirez, E.; Oliva, M.; Kim-Hellmuth, S.; Stranger, B. E.; Ardlie, K. G.; Aguet, F.; Ahsan, H.; GTEx Consortium, ; Doherty, J.; Kibriya, M. G.; Pierce, B. L.

10.1101/793406 — genetics — Posted on 2019-10-07

3189 Evolution of the DAN gene family in vertebrates

Opazo, J. C.; Hoffmann, F. G.; Zavala, K.; Edwards, S. V.

10.1101/794404 — evolutionary biology — Posted on 2019-10-07

3190 Fine-scale position effects shape the distribution of inversion breakpoints in Drosophila melanogaster

McBroome, J.; Liang, D.; Corbett-Detig, R.

10.1101/793364 — evolutionary biology — Posted on 2019-10-07

3191 An artistic approach to neurofeedback for emotion regulation

Gabriel, D.; Chabin, T.; Joucla, C.; Bussiere, T.; Tarka, A.; Galmes, N.; Comte, A.; Bertrand, G.; Giustiniani, J.; Haffen, E.

10.1101/794560 — neuroscience — Posted on 2019-10-07

3192 Venlafaxine stimulates an MMP-9-dependent increase in excitatory/inhibitory balance in a stress model of depression

Alaiyed, S.; McCann, M.; Mahajan, G.; Rajkowska, G.; Stockmeier, C.; Kellar, K.; Wu, J.-y.; Conant, K.

10.1101/794628 — neuroscience — Posted on 2019-10-07

3193 Differential polysaccharide utilization is the basis for a nanohaloarchaeon : haloarchaeon symbiosis.

La Cono, V.; Messina, E.; Rohde, M.; Arcadi, E.; Ciordia, S.; Crisafi, F.; Denaro, R.; Ferrer, M.; Giuliano, L.; Golyshin, P. N.; Golyshina, O. V.; Hallsworth, J. E.; La Spada, G.; Mena, M. C.; Shevchenko, M. A.; Smedile, F.; Sorokin, D. Y.; Toshchakov, S. V.; Mushegian, A.; Yakimov, M. M.

10.1101/794461 — microbiology — Posted on 2019-10-07

3194 Scalable empirical mixture models that account for across-site compositional heterogeneity

Schrempf, D.; Lartillot, N.; Szöllosi, G.

10.1101/794263 — bioinformatics — Posted on 2019-10-07

3195 ProteoClade: a taxonomic toolkit for multi-species and metaproteomic analysis

Mooradian, A. D.; van der Post, S.; Naegle, K. M.; Held, J. M.

10.1101/793455 — bioinformatics — Posted on 2019-10-07

3196 Molecular Mechanism of Brassinosteroids Perception by the Plant Growth Receptor BRI1

Aldukhi, F.; Deb, A.; Zhao, C.; Moffett, A. S.; Shukla, D.

10.1101/794750 — plant biology — Posted on 2019-10-07

3197 Increases in structural shortest path lengths provide information about the distal neurophysiological consequences of focal brain lesions

Griffis, J. C.; Metcalf, N. V.; Corbetta, M.; Shulman, G. L.

10.1101/785576 — neuroscience — Posted on 2019-10-07

3198 Bioinformatic analysis of brain-specific miRNAs for identification of candidate traumatic brain injury blood biomarkers.

Smothers, C. G.; Winkelman, C.; O'Connell, G. C.

10.1101/794321 — neuroscience — Posted on 2019-10-07

3199 Representation of Task Structure in Human Hippocampus

Mizrak, E.; Bouffard, N.; Libby, L. A.; Boorman, E.; Ranganath, C.

10.1101/794305 — neuroscience — Posted on 2019-10-07

3200 Exact Distribution of Linkage Disequilibrium in the Presence of Mutation, Selection or Minor Allele Frequency Filtering

Cheng, H.; Qu, J.; Fernando, R. L.; Garrick, D.; Kachman, S.

10.1101/794347 — genetics — Posted on 2019-10-07

3201 Disentangling Sources of Gene Tree Discordance in Phylotranscriptomic Datasets: A Case Study from Amaranthaceae s.l.

Morales-Briones, D. F.; Kadereit, G.; Tefarikis, D. T.; Moore, M.; Smith, S. A.; Brockington, S. F.; Timoneda, A.; Yim, W. C.; Cushman, J. C.; Yang, Y.

10.1101/794370 — evolutionary biology — Posted on 2019-10-07

3202 Opportunistically collected photographs can be used to estimate large-scale phenological trends

Taylor, S. D.; Guralnick, R. P.

10.1101/794396 — ecology — Posted on 2019-10-07

3203 Diversity and seasonality of horse flies (Diptera: Tabanidae) in Uruguay

Lucas, M.; Krolow, T. K.; Riet-Correa, F.; Barros, A. T. M.; Krüger, R. F.; Saravia, A.; Miraballes, C.

10.1101/794479 — ecology — Posted on 2019-10-07

3204 Evaluating the boundaries of marine biogeographic regions of the Southwestern Atlantic using halacarid mites (Halacaridae), meiobenthic organisms with a low dispersal potential

Pepato, A. R.; Vidigal, T. H. D. A.; Klimov, P. B.

10.1101/794040 — evolutionary biology — Posted on 2019-10-07

3205 HOPS: a quantitative score reveals pervasive horizontal pleiotropy in human genetic variation is driven by extreme polygenicity of human traits and diseases

Jordan, D. M.; Verbanck, M.; Do, R.

10.1101/311332 — genetics — Posted on 2019-10-07

3206 A mechanism for how Cdr1/Nim1 kinase promotes mitotic entry by inhibiting Wee1

Opalko, H. E.; Nasa, I.; Kettenbach, A. N.; Moseley, J. B.

10.1101/730242 — cell biology — Posted on 2019-10-07

3207 Disrupting the Transmembrane Domain Oligomerization of Protein Tyrosine Phosphatase Receptor J Promotes its Activity in Cancer Cells

Bloch, E.; Sikorski, E.; Pontoriero, D.; Berger, B. W.; Lazzara, M. J.; Thevenin, D.

10.1101/672147 — biochemistry — Posted on 2019-10-07

3208 Vascular Progenitors Generated from Tankyrase Inhibitor-Regulated Naive Diabetic Induced Pluripotent Stem Cells Potentiate Efficient Revascularization of Ischemic Retina

Park, T. S.; Zimmerlin, L.; Evans-Moses, R.; Thomas, J.; Huo, J. S.; Kanherkar, R.; He, A.; Ruzgar, N.; Grebe, R.; Bhutto, I.; Lutty, G.; Zambidis, E. T.

10.1101/678599 — developmental biology — Posted on 2019-10-07

3209 Multivariate AND-gate substrate probes as enhanced contrast agents for fluorescence-guided surgery

Widen, J. C.; Tholen, M.; Yim, J. J.; antaris, A.; Casey, K. M.; Rogalla, S.; Klaassen, A.; Sorger, J.; Bogyo, M.

10.1101/695403 — bioengineering — Posted on 2019-10-07

3210 Relationship between neural phase-locked responses to speech and speech-in-noise perception in young and older adults

Mai, G.; Howell, P.

10.1101/794313 — neuroscience — Posted on 2019-10-07

3211 Acquired FGFR and FGF alterations confer resistance to estrogen receptor (ER) targeted therapy in ER+ metastatic breast cancer

Mao, P.; Cohen, O.; Kowalski, K. J.; Kusiel, J. G.; Buendia-Buendia, J. E.; Cuoco, M. S.; Exman, P.; Wander, S. A.; Waks, A. G.; Nayar, U.; Chung, J.; Freeman, S.; Rozenblatt-Rosen, O.; Miller, V. A.; Federica Piccioni, F.; Root, D. E.; Regev, A.; Winer, E. P.; Lin, N. U.; Wagle, N.

10.1101/605436 — cancer biology — Posted on 2019-10-07

3212 On a simple general principle of brain organization.

Perez Velazquez, J. L.; Mateos, D. M.; Guevara Erra, R.

10.1101/771535 — neuroscience — Posted on 2019-10-07

3213 Dominant Vibrio cholerae phage exhibits lysis inhibition sensitive to disruption by a defensive phage satellite

Hays, S. G.; Seed, K.

10.1101/790493 — microbiology — Posted on 2019-10-07

3214 Detection of H3N8 influenza A virus with multiple mammalian-adaptive mutations in a rescued Grey seal (Halichoerus grypus) pup

Venkatesh, D.; Bianco, C.; Nunez, A.; Collins, R.; Thorpe, D.; Reid, S. M.; Brookes, S. M.; Essen, S.; McGinn, N.; Seekings, J.; Cooper, J.; Brown, I. H.; Lewis, N. S.

10.1101/741173 — microbiology — Posted on 2019-10-07

3215 Treg cells maintain selective access to IL-2 and immune homeostasis despite substantially reduced CD25 function

Hayes, E. T.; Hagan, C. E.; Campbell, D. J.

10.1101/786228 — immunology — Posted on 2019-10-07

3216 Integration of Multi-level Molecular Scoring for the Interpretation of RAS-Family Genetic Variation

Tripathi, S.; Dsouza, N. R.; Urrutia, R. A.; Zimmermann, M. T.

10.1101/794131 — genetics — Posted on 2019-10-07

3217 UAV Based Imaging Platform for Monitoring Maize Growth Throughout Development

Tirado, S. B.; Hirsch, C. N.; Springer, N. M.

10.1101/794057 — plant biology — Posted on 2019-10-07

3218 A simple and sensitive SYBR Gold-based assay to quantify DNA-protein interactions

Schreier, S.; Petla, B. P.; Lin, T.; Chakravarty, S.; Subramanian, S.

10.1101/634816 — plant biology — Posted on 2019-10-07

3219 Type I-F CRISPR-Cas distribution and array dynamics in Legionella pneumophila.

Deecker, S. R.; Ensminger, A. W.

10.1101/276188 — microbiology — Posted on 2019-10-07

3220 The genomic landscape of metastatic castration-resistant prostate cancers reveals multiple distinct genotypes with potential clinical impact

van Dessel, L. F.; van Riet, J.; Smits, M.; Zhu, Y.; Hamberg, P.; van der Heijden, M. S.; Bergman, A. M.; van Oort, I. M.; de Wit, R.; Voest, E. E.; Steeghs, N.; Yamaguchi, T. N.; Livingstone, J.; Boutros, P. C.; Martens, J. W. M.; Sleijfer, S.; Cuppen, E.; Zwart, W.; van de Werken, H. J. G.; Mehra, N.; Lolkema, M. P.

10.1101/546051 — cancer biology — Posted on 2019-10-07

3221 First fossil skull of an anteater (Vermilingua, Myrmecophagidae) from northern South America, a taxonomic reassessment of Neotamandua and a discussion of the myrmecophagid diversification

Jimenez-Lara, K.; Gonzalez, J.

10.1101/793307 — paleontology — Posted on 2019-10-07

3222 Perceptual learning evidence for an interval- and modality invariant representation of subsecond time

Yu, C.; Xiong, Y.-Z.; Guan, S.-C.

10.1101/794032 — neuroscience — Posted on 2019-10-07

3223 Transparent and Reproducible Research Practices in the Surgical Literature

Hughes, T.; Niemann, A.; Tritz, D.; Boyer, K.; Robbins, H.; Vassar, M.

10.1101/779702 — scientific communication and education — Posted on 2019-10-07

3224 Sites of Circadian Clock Neuron Plasticity Mediate Sensory Integration and Entrainment.

Fernandez, M. d. l. P.; Pettibone, H. L.; Roell, C. J.; Huynh, K. V.; Davey, C. E.; Lennox, S. M.; Kostadinov, B. S.; Shafer, O. T.

10.1101/794537 — neuroscience — Posted on 2019-10-07

3225 Automated highly multiplexed super-resolution imaging of protein nano-architecture in cells and tissues

Klevanski, M.; Herrmannsdoerfer, F.; Venkataramani, V.; Sass, S.; Heilemann, M.; Kuner, T.

10.1101/791053 — neuroscience — Posted on 2019-10-07

3226 Choosing to view morbid information involves reward circuitry

Oosterwijk, S.; Snoek, L.; Tekoppele, J.; Engelbert, L.; Scholte, H. S.

10.1101/795120 — neuroscience — Posted on 2019-10-07

3227 Distribution of iridescent colours in hummingbird communities results from the interplay between selection for camouflage and communication

Gruson, H.; Elias, M.; Parra, J. L.; Andraud, C.; Berthier, S.; Doutrelant, C.; Gomez, D.

10.1101/586362 — ecology — Posted on 2019-10-07

3228 A new actin depolymerase: a Myosin 1 motor

Pernier, J.; Kusters, R.; Bousquet, H.; Lagny, T.; Morchain, A.; Joanny, J.-F.; Bassereau, P.; Coudrier, E.

10.1101/375923 — biophysics — Posted on 2019-10-07

3229 Altered synaptic ingestion by human microglia in Alzheimer’s disease

Tzioras, M.; Daniels, M. J.; King, D.; Popovic, K.; Holloway, R. K.; Stevenson, A. J.; Tulloch, J.; Kandasamy, J.; Sokol, D.; Latta, C.; Rose, J.; Smith, C.; Miron, V. E.; Henstridge, C. M.; McColl, B. W.; Spires-Jones, T. L.

10.1101/795930 — neuroscience — Posted on 2019-10-07

3230 Sticky Situations: Bacterial Attachment Deciphered by Interferometry of Silicon Microstructures

Leonard, H.; Holtzman, L.; Haimov, Y.; Weizman, D.; Kashi, Y.; Halachmi, S.; Segal, E.

10.1101/793125 — microbiology — Posted on 2019-10-07

3231 Perineuronal nets stabilize the grid cell network

Christensen, A. C.; Lensjo, K. K.; Lepperod, M. E.; Dragly, S.-A.; Sutterud, H.; Blackstad, J. S.; Fyhn, M.; Hafting, T.

10.1101/796342 — neuroscience — Posted on 2019-10-07

3232 FB5P-seq: FACS-based 5-prime end single-cell RNAseq for integrative analysis of transcriptome and antigen receptor repertoire in B and T cells

Attaf-Bouabdallah, N.; Cervera-Marzal, I.; Dong, C.; Gil, L.; Renand, A.; Spinelli, L.; Milpied, P.

10.1101/795575 — immunology — Posted on 2019-10-07

3233 High-throughput sequencing analysis of bacterial diversity in raw and pasteurized goat milk

Huang, F.; Liu, S.; Zhou, X.; Wang, P.; He, R.; Zhou, Z.; Zou, C.

10.1101/751149 — microbiology — Posted on 2019-10-07

3234 Too much, too young? Altered corticolimbic axonal innervation and resting state functional connectivity suggests sex-dependent outcomes in a rat model of early life adversity

Honeycutt, J. A.; Demaestri, C.; Peterzell, S.; Silveri, M. M.; Cai, X.; Kulkarni, P.; Cunningham, M. G.; Ferris, C. F.; Brenhouse, H. C.

10.1101/700666 — neuroscience — Posted on 2019-10-07

3235 Integration of locomotion and auditory signals in the mouse inferior colliculus

Yang, Y.; Lee, J.; Kim, G.

10.1101/795872 — neuroscience — Posted on 2019-10-07

3236 Creating Artificial Human Genomes Using Generative Models

Yelmen, B.; Decelle, A.; Ongaro, L.; Marnetto, D.; Tallec, C.; Montinaro, F.; Furtlehner, C.; Pagani, L.; Jay, F.

10.1101/769091 — bioinformatics — Posted on 2019-10-07

3237 A novel approach to localize cortical TMS effects

Weise, K.; Numssen, O.; Thielscher, A.; Hartwigsen, G.; Knoesche, T.

10.1101/595603 — neuroscience — Posted on 2019-10-07

3238 Automated data-intensive forecasting of plant phenology throughout the United States

Taylor, S. D.; White, E. P.

10.1101/634568 — ecology — Posted on 2019-10-07

3239 The lhfpl5 ohnologs lhfpl5a and lhfpl5b are required for mechanotransduction in distinct populations of sensory hair cells in zebrafish.

Erickson, T.; Pacentine, I. V.; Venuto, A.; Clemens, R.; Nicolson, T.

10.1101/793042 — neuroscience — Posted on 2019-10-07

3240 The majority of the matrix protein TapA is dispensable for biofilm formation by Bacillus subtilis

Stanley-Wall, N.; MacPhee, C.; Arnaouteli, S.; Sukhodub, T.; Earl, C.

10.1101/794164 — microbiology — Posted on 2019-10-07

3241 Accelerated Protein Biomarker Discovery from FFPE tissue samples using Single-shot, Short Gradient Microflow SWATH MS

Sun, R.; Hunter, C.; Chen, C.; Weigang, G.; Morrice, N.; Liang, S.; Hui, Y. c.; Zhang, Q.; Cai, X.; Yu, X.; Chen, L.; Dai, S.; Luan, Z.; Aebersold, R.; Zhu, Y.; Guo, T.

10.1101/675348 — cancer biology — Posted on 2019-10-07

3242 Ingested insecticide to control Aedes aegypti: Developing a novel dried attractive toxic sugar bait device for intra-domiciliary control

Sippy, R. J.; Rivera, G. E.; Sanchez, V.; Heras, F. H.; Morejon, B.; Ayala, E. B.; Hikida, R. A.; Lopes-Latorre, M. A.; Aguirre, A.; Stewart-Ibarra, A. M.; Larsen, D. A.; Neira, M.

10.1101/794065 — ecology — Posted on 2019-10-07

3243 CaBLAM for CryoEM Chiropraxis, UnDowser to Rethink \"Waters\", and NGL Viewer to Recapture Online 3D Graphics in MolProbity Validation

Prisant, M. G.; Williams, C. J.; Chen, V. B.; Richardson, J. S.; Richardson, D. C.

10.1101/795161 — biophysics — Posted on 2019-10-07

3244 Physical interactions between Gsx2 and Ascl1 regulate the balance between progenitor expansion and neurogenesis in the mouse lateral ganglionic eminence

Roychoudhury, K.; Salomone, J.; Qin, S.; Nakafuku, M.; Gebelein, B.; Campbell, K.

10.1101/794511 — neuroscience — Posted on 2019-10-07

3245 Comparative Genomics Shows Differences in the Electron Transport and Carbon Metabolic Pathways of Mycobacterium africanum relative to Mycobacterium tuberculosis and suggests an adaptation to low oxygen tension

Ofori-Anyinam, A. B.; Riley, A.; Jobarteh, T.; Gitteh, E.; Sarr-Kuyateh, B.; Faal-Jawara, T. I.; Rigouts, L.; Senghore, M.; Kehinde, A.; Onyejepu, N.; Antonio, M.; C. de Jong, B.; Gehre, F.; Meehan, C. J.

10.1101/792762 — microbiology — Posted on 2019-10-07

3246 Parallel and non-parallel changes of the gut microbiota during trophic diversification in repeated young adaptive radiations of sympatric cichlid fish

Haerer, A.; Torres-Dowdall, J.; Rometsch, S.; Yohannes, E.; Machado-Schiaffino, G.; Meyer, A.

10.1101/793760 — evolutionary biology — Posted on 2019-10-07

3247 Structural Basis and Designing of Peptide Vaccine using PE-PGRS Family Protein of Mycobacterium ulcerans - An Integrated Vaccinomics Approach

Nain, Z.; Karim, M. M.; Sen, M. K.; Adhikari, U. K.

10.1101/795146 — bioinformatics — Posted on 2019-10-07

3248 Pancreas-specific miR-216a regulates proliferation and endocrine and exocrine cell function in vivo

Erener, S.; Ellis, C. E.; Ramzy, A.; Glavas, M. M.; O'Dwyer, S.; Pereira, S.; Wang, T.; Pang, J.; Bruin, J. E.; Riedel, M. J.; Baker, R. J.; Webber, T. D.; Kopp, J. L.; Herzig, S.; Kieffer, T. J.

10.1101/792655 — physiology — Posted on 2019-10-07

3249 Higher performers upregulate brain signal variability in response to more feature-rich visual input

Garrett, D. D.; Epp, S. M.; Kleemeyer, M.; Lindenberger, U.; Polk, T.

10.1101/249029 — neuroscience — Posted on 2019-10-07

3250 Range expansion shifts clonal interference patterns in evolving populations

Krishnan, N.; Scott, J. G.

10.1101/794867 — evolutionary biology — Posted on 2019-10-07

3251 Accelerated Biochemical Kinetic Model Fitting via the Asynchronous, Generalized Island Method

Medley, J. K.; Asifullah, S.; Hellerstein, J.; Sauro, H. M.

10.1101/660522 — systems biology — Posted on 2019-10-06

3252 Activity labeling in vivo using CaMPARI2 reveals electrophysiological differences between neurons with high and low firing rate set points

Trojanowski, N. F.; Turrigiano, G.

10.1101/795252 — neuroscience — Posted on 2019-10-07

3253 Abbreviated assessment of psychopathology in patients with suspected seizure disorders

Malpas, C. B.; Wang, A.; Leong, M.; Johnstone, B.; Rayner, G.; Kalincik, T.; Kwan, P.; O'Brien, T. J.; Velakoulis, D.

10.1101/677278 — neuroscience — Posted on 2019-10-07

3254 Fine chromatin-driven mechanism of transcription interference by antisense noncoding transcription

Gill, J. K.; Maffioletti, A.; Garcia-Molinero, V.; Stutz, F.; Soudet, J.

10.1101/649434 — molecular biology — Posted on 2019-10-07

3255 Extracellular 2’3’-cGAMP is an immunotransmitter produced by cancer cells and regulated by ENPP1

Carozza, J. A.; Boehnert, V.; Nguyen, K. C.; Skariah, G.; Shaw, K. E.; Brown, J. A.; Rafat, M.; von Eyben, R.; Graves, E. E.; Glenn, J. S.; Smith, M.; Li, L.

10.1101/539312 — biochemistry — Posted on 2019-10-07

3256 Rationally derived inhibitors of hepatitis C virus (HCV) p7 channel activity reveal prospect for bimodal antiviral therapy

Shaw, J.; Gosein, R.; Kalita, M. M.; Kankanala, J.; Mahato, D. R.; Foster, T.; Scott, C.; Brown, E.; King, B. J.; Bentham, M.; Wetherill, L.; Bloy, A.; Samson, A.; Harris, M.; Mankouri, J.; Rowlands, D.; Macdonald, A.; Tarr, A. W.; Fischer, W.; Foster, R.; Griffin, S.

10.1101/374793 — microbiology — Posted on 2019-10-07

3257 The polyphagous plant pathogenic fungus Botrytis cinerea encompasses host-specialized and generalist populations

Mercier, A.; Carpentier, F.; Duplaix, C.; Auger, A.; Pradier, J.-M.; Viaud, M.; Gladieux, P.; Walker, A.-S.

10.1101/716985 — microbiology — Posted on 2019-10-07

3258 MTS1338, a small Mycobacterium tuberculosis RNA, regulates transcriptional shifts consistent with bacterial adaptation for entering into dormancy and survival within host macrophages

Salina, E. G.; Grigorov, A.; Skvortsova, Y.; Majorov, K.; Bychenko, O.; Ostrik, A.; Logunova, N.; Ignatov, D.; Kaprelyants, A.; Apt, A.; Azhikina, T.

10.1101/474304 — microbiology — Posted on 2019-10-06

3259 A decoy heterotrimeric Gα protein has substantially reduced nucleotide binding but retains nucleotide-independent interactions with its cognate RGS protein and Gβγ dimer

Lou, F.; Abramyan, T. M.; Jia, H.; Tropsha, A.; Jones, A. M.

10.1101/795088 — biochemistry — Posted on 2019-10-06

3260 Activity labeling in vivo using CaMPARI2 reveals electrophysiological differences between neurons with high and low firing rate set points

Trojanowski, N. F.; Turrigiano, G.

10.1101/795252 — neuroscience — Posted on 2019-10-06

3261 Structure of a rabies virus polymerase complex from electron cryo-microscopy

Horwitz, J. A.; Jenni, S.; Harrison, S. C.; Whelan, S. P. J.

10.1101/794073 — molecular biology — Posted on 2019-10-06

3262 The mTORC1/S6K/PDCD4/eIF4A axis determines outcome of mitosis.

Kamal, M. M.; Kucharski, T.; El Assad, W.; Gandin, V.; Abas, Y.; Nagar, B.; Pelletier, J.; Toposiviric, I.; Teodoro, J. G.

10.1101/794545 — molecular biology — Posted on 2019-10-06

3263 Structural and mechanical remodeling of the cytoskeleton studied in 3D microtissues under acute dynamic stretch

Walker, M.; Rizzuto, P.; Godin, M.; Pelling, A.

10.1101/780312 — biophysics — Posted on 2019-10-06

3264 OpenCRAVAT, an open source collaborative platform for the annotation of human genetic variation

Pagel, K. A.; Kim, R.; Moad, K.; Busby, B.; Zheng, L.; Hynes-Grace, M.; Tokheim, C.; Ryan, M.; Karchin, R.

10.1101/794297 — bioinformatics — Posted on 2019-10-06

3265 Mechanisms of tissue-specific genetic regulation revealed by latent factors across eQTLs

He, Y.; Chhetri, S. B.; Arvanitis, M.; Srinivasan, K.; Aguet, F.; Ardlie, K. G.; Barbeira, A. N.; Bonazzola, R.; Im, H. K.; GTEx Consortium, ; Brown, C. D.; Battle, A.

10.1101/785584 — genomics — Posted on 2019-10-06

3266 Assessing a causal relationship between circulating lipids and breast cancer risk via Mendelian randomization

Johnson, K. E.; Siewert, K. M.; Klarin, D.; Damrauer, S. M.; The VA Million Veteran Program, ; Chang, K.-M.; Tsao, P. S.; Assimes, T. L.; Maxwell, K. N.; Voight, B. F.

10.1101/794594 — genomics — Posted on 2019-10-06

3267 The effect of habitat choice on evolutionary rescue in subdivided populations

Czuppon, P.; Blanquart, F.; Uecker, H.; Debarre, F.

10.1101/738898 — evolutionary biology — Posted on 2019-10-06

3268 Steric Regulation of Tandem Calponin Homology Domain Actin-Binding Affinity

Harris, A. R.; Belardi, B.; Jreij, P.; Wei, K.; Shams, H.; Bausch, A.; Fletcher, D. A.

10.1101/598359 — biochemistry — Posted on 2019-10-06

3269 Weighted burden analysis of exome-sequenced late onset Alzheimer’s cases and controls provides further evidence for a role for PSEN1 and suggests involvement of the PI3K/Akt/GSK-3β and WNT signalling pathways

Curtis, D.; Bakaya, K.; Sharma, L.; Bandyopadhyay, S.

10.1101/596007 — genetics — Posted on 2019-10-06

3270 A Framework of All Discovered Immunological Pathways and Their Roles for Four Specific Types of Pathogens and Hypersensitivities

Hu, W.

10.1101/006965 — immunology — Posted on 2019-10-06

3271 Nonsense suppression position effect implicates poly(A)-binding protein in the regulation of translation termination

Wu, C.; Roy, B.; He, F.; Jacobson, A.

10.1101/793158 — molecular biology — Posted on 2019-10-06

3272 Lytic infection with murine gammaherpesvirus 68 activates host and viral RNA polymerase III-dependent promoters to enhance non-coding RNA expression

Knox, A. N.; Mueller, A.; Medina, E. M.; Clambey, E. T.; van Dyk, L. F.

10.1101/795278 — microbiology — Posted on 2019-10-06

3273 A general quantitative relation linking bacterial cell growth and the cell cycle

Zheng, H.; Bai, Y.; Jiang, M.; Tokuyasu, T. A.; Huang, X.; Zhong, F.; Fu, X.; Kleckner, N.; Hwa, T.; Liu, C.

10.1101/795013 — microbiology — Posted on 2019-10-06

3274 Clonal interference patterns shift during range expansion

Scott, J. G.; Krishnan, N.

10.1101/794867 — evolutionary biology — Posted on 2019-10-06

3275 Novel functional insights revealed by distinct protein-protein interactions of the residual SWI/SNF complex in SMARCA4-deficient small cell carcinoma of the ovary, hypercalcemic type

Raupach, E. A.; Garcia-Mansfield, K.; Sharma, R.; Hegde, A. M.; David-Dirgo, V.; Wang, Y.; Young Shin, C.; Tao, L. V.; Facista, S. J.; Moore, R.; Lang, J. D.; Zismann, V. L.; Orlando, K. A.; Spillman, M.; Karnezis, A. N.; Bennett, L. B.; Huntsman, D. G.; Trent, J. M.; Hendricks, W. P.; Weissman, B. E.; Pirrotte, P.

10.1101/794776 — cancer biology — Posted on 2019-10-06

3276 A Novel Droplet Digital PCR Human mtDNA Assay for Global Fecal Source Tracking

Zhu, K.; Suttner, B.; Konstantinidis, K. T.; Brown, J.

10.1101/794891 — microbiology — Posted on 2019-10-06

3277 B-cell enforced expression of the mouse ortholog of MYD88L265P is responsible for Waldenstrom-like B-cell lymphoma.

Ouk, C.; Roland, L.; Saintamand, A.; Gachard, N.; Thomas, M.; Deveza, M.; Faumont, N.; Feuillard, J.; VINCENT-FABERT, C.

10.1101/794024 — cancer biology — Posted on 2019-10-06

3278 Amyloidogenic Proteins Drive Hepatic Proteostasis Remodeling in an Induced Pluripotent Stem Cell Model of Systemic Amyloid Disease

Giadone, R. M.; Liberti, D. C.; Matte, T. M.; Rosarda, J. D.; Torres-Arancivia, C.; Ghosh, S.; Diedrich, J. K.; Pankow, S.; Skvir, N.; Jean, J.-C.; Yates, J. R.; Wilson, A. A.; Connors, L. H.; Kotton, D. N.; Wiseman, R. L.; Murphy, G. J.

10.1101/358515 — cell biology — Posted on 2019-10-06

3279 Non-replication of functional connectivity differences in autism spectrum disorder across multiple sites and denoising strategies

He, Y.; Byrge, L.; Kennedy, D. P.

10.1101/640797 — neuroscience — Posted on 2019-10-06

3280 Deer slow down litter decomposition by reducing litter quality in a temperate forest

Chollet, S.; Maillard, M.; Schorghuber, J.; Grayston, S.; Martin, J.-L.

10.1101/690032 — ecology — Posted on 2019-10-06

3281 Detection and characterization of copy number variants based on whole-genome sequencing by DNBSEQ platforms

Rao, J.; Peng, L.; Chen, F.; Jiang, H.; Geng, C.; Xia, Z.; Liu, X.; Liang, X.; Mu, F.

10.1101/786962 — bioinformatics — Posted on 2019-10-06

3282 Effect of sampling frequency on fractal fluctuations during treadmill walking

Marmelat, V.; Duncan, A.; Meltz, S.

10.1101/670810 — bioengineering — Posted on 2019-10-06

3283 An Optimized Registration Workflow and Standard Geometric Space for Small Animal Brain Imaging

Ioanas, H.-I.; Marks, M.; Yanik, M. F.; Rudin, M.

10.1101/619650 — neuroscience — Posted on 2019-10-06

3284 Perceptions, attitudes and practices towards scabies in communities on the Bijagos Islands, Guinea-Bissau

Lopes, M. J.; Teixeira da Silva, E.; Ca, J.; Goncalves, A.; Rodrigues, A.; Manjuba, C.; Nakutum, J.; D'Alessandro, U.; Achan, J.; Logan, J.; Bailey, R.; Walker, S.; Last, A.; Marks, M.

10.1101/574327 — epidemiology — Posted on 2019-10-06

3285 Light activates the translational regulatory GCN2 kinase via reactive oxygen species emanating from the chloroplast

Lokdarshi, A.; Guan, J.; Urquidi-Camacho, R. A.; Cho, S. K.; Morgan, P. W.; Leonard, M.; Shimono, M.; Day, B.; von Arnim, A. G.

10.1101/794362 — plant biology — Posted on 2019-10-05

3286 Hormonal and modality specific effects on males’ emotion recognition ability

Lausen, A.; Broering, C.; Penke, L.; Schacht, A.

10.1101/791376 — physiology — Posted on 2019-10-05

3287 Multispectral Imaging Differentiates Unique Macrophage Profiles in Patients with Distinct Chronic Liver Diseases

Saldarriaga, O. A.; Booth, A.; Freiberg, B.; Burks, J.; Krishnan, S.; Rao, A.; Utay, N.; Ferguson, M.; Yi, M.; Beretta, L.; Stevenson, H. L.

10.1101/794610 — pathology — Posted on 2019-10-05

3288 Pitfalls in estimating the global carbon removal via forest expansion - a comment on Bastin et al. (2019)

Krause, A.; Arneth, A.; Bayer, A.; Buras, A.; Knoke, T.; Zang, C.; Rammig, A.

10.1101/788026 — ecology — Posted on 2019-10-05

3289 The human sperm beats anisotropically and asymmetrically in 3D

Gadelha, H.; Hernandez-Herrera, P.; Montoya, F.; Darszon, A.; Corkidi, G.

10.1101/795245 — cell biology — Posted on 2019-10-05

3290 Mitigating Temozolomide Resistance in Glioblastoma via DNA Damage-Repair Inhibition

Sorribes, I. C.; Handelman, S. K.; Jain, H. V.

10.1101/794115 — cancer biology — Posted on 2019-10-05

3291 Antimicrobial resistance gene levels are independent of levofloxacin administration but related to abundance of specific pathobionts in dementia patients

Rowan-Nash, A. D.; Araos, R.; D'Agata, E. M.; Belenky, P.

10.1101/783969 — microbiology — Posted on 2019-10-05

3292 SKIPHOS: non-kinase specific phosphorylation site prediction with random forests and amino acid skip-gram embeddings

Trac, T. Q.; Phan, K. H.; Nguyen, C. M.; Dang, H. T.

10.1101/793794 — bioinformatics — Posted on 2019-10-05

3293 Using fluorescence flow cytometry data for single-cell gene expression analysis in bacteria

Galbusera, L.; Bellement-Theroue, G.; Urchueguia, A.; Julou, T.; van Nimwegen, E. J.

10.1101/793976 — bioinformatics — Posted on 2019-10-05

3294 A Solution Method for Predictive Simulations in a Stochastic Environment

Koelewijn, A. D.; van den Bogert, A. J.

10.1101/793588 — bioengineering — Posted on 2019-10-05

3295 Datelife: leveraging databases and analytical tools to reveal the dated Tree of Life.

Sanchez Reyes, L. L.; O'Meara, B. C.

10.1101/782094 — scientific communication and education — Posted on 2019-10-05

3296 Integration of contours defined by second-order contrast-modulation of texture

Baldwin, A. S.; Kenwood, M.; Hess, R. F.

10.1101/792820 — neuroscience — Posted on 2019-10-05

3297 Characterisation of AmpC Hyper-Producing Escherichia coli from Humans and Dairy Farms Collected in Parallel in the Same Geographical Region

Alzayn, M.; Findlay, J.; Schubert, H.; Mounsey, O.; Gould, V. C.; Heesom, K. J.; Turner, K. M.; Barrett, D. C.; Reyher, K. K.; Avison, M. B.

10.1101/784694 — microbiology — Posted on 2019-10-05

3298 Isolation and comparative genomic analysis of reuterin-producing Lactobacillus reuteri from poultry gastrointestinal tract

Greppi, A.; Asare, P. T.; Schwab, C.; Zemp, N.; Stephan, R.; Lacroix, C.

10.1101/793299 — genomics — Posted on 2019-10-05

3299 Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases

Chen, Q.; Britto, R.; Erill, I.; Jeffery, C. J.; Liberzon, A.; Magrane, M.; Onami, J.-i.; Robinson-Rechavi, M.; Sponarova, J.; Zobel, J.; Verspoor, K.

10.1101/788034 — scientific communication and education — Posted on 2019-10-05

3300 Evidence of a cellulosic layer in Pandoravirus tegument and the mystery of the genetic support of its biosynthesis

BRAHIM BELHAOUARI, D.; BAUDOIN, J.-P.; GNANKOU, F.; DI PINTO, F.; Colson, P.; Aherfi, S.; LA SCOLA, B.

10.1101/793711 — microbiology — Posted on 2019-10-05

3301 Ketamine effects on anxiety and fear-related behaviors: current literature evidence and new findings

Silote, G. P.; Oliveira, S. F.; Ribeiro, D. E.; Souza, M. M.; Andreatini, R.; Joca, S. R.; Beijamini, V.

10.1101/793398 — animal behavior and cognition — Posted on 2019-10-05

3302 Differential protein metabolism and regeneration in hypertrophic diaphragm and atrophic gastrocnemius muscles in hibernating Daurian ground squirrels

Yan, X.; Gao, X.; Peng, X.; Zhang, J.; Ma, X.; Wei, Y.; Wang, H.; Gao, Y.; Chang, H.

10.1101/793752 — physiology — Posted on 2019-10-05

3303 MTHFR gene A1298C polymorphism and Alzheimer’s disease susceptibility

Rai, V.

10.1101/785063 — neuroscience — Posted on 2019-10-05

3304 Dose-controlled tDCS reduces electric field intensity variability at a cortical target site

Evans, C.; Bachmann, C.; Lee, J.; Gregoriou, E.; Ward, N.; Bestmann, S.

10.1101/793836 — neuroscience — Posted on 2019-10-05

3305 Gamma-cycle duration predicts instantaneous amplitude, spike rate and synchrony in macaque V1.

Spyropoulos, G.; Dowdall, J. R.; Scholvinck, M. L.; Bosman, C. A.; Lima, B.; Peter, A.; Onorato, I.; Klon-Lipok, J.; Roese, R.; Neuenschwander, S.; Singer, W.; Vinck, M.; Fries, P.

10.1101/793729 — neuroscience — Posted on 2019-10-05

3306 Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: An inter-laboratory study

10.1101/793885 — microbiology — Posted on 2019-10-05

3307 Differential spatiotemporal targeting of Toxoplasma and Salmonella by GBP1 assembles caspase signalling platforms

Fisch, D.; Clough, B.; Domart, M.-C.; Bando, H.; Masonou, T.; Collinson, L. M.; Yamamoto, M.; Shenoy, A.; Frickel, E.-M.

10.1101/792804 — microbiology — Posted on 2019-10-05

3308 Gouania willdenowi is a teleost fish without immunoglobulin genes

Mirete-Bachiller, S.; Olivieri, D. N.; Gambon-Deza, F.

10.1101/793695 — immunology — Posted on 2019-10-05

3309 Physiological synchrony promotes cooperative success in real-life interactions

Behrens, F.; Snijdewint, J.; Moulder, R. G.; Prochazkova, E.; Sjak-Shie, E. E.; Boker, S. M.; Kret, M. E.

10.1101/792416 — physiology — Posted on 2019-10-05

3310 DNA transistors switched by the Hofmeister effect

Hoog, T. G.; Pawlak, M. R.; Aufdembrink, L. M.; Bachan, B. R.; Galles, M. B.; Bense, N. B.; Adamala, K. P.; Engelhart, A. E.

10.1101/784561 — synthetic biology — Posted on 2019-10-05

3311 SCRIBE: a new approach to dropout imputation and batch effects correction for single-cell RNA-seq data

Zhang, Y.; Liang, K.; Liu, M.; Li, Y.; Ge, H.; Zhao, H.

10.1101/793463 — bioinformatics — Posted on 2019-10-05

3312 Derivation of oligodendrocyte precursor cells from human bone marrow stromal cells and use for re-myelination in the congenitally dysmyelinated brain

Lam, G.; Shea, G. K.-H.; Wu, K. L. K.; Li, M. T.-S.; Kwok, C. H.; Chan, Z. C. K.; Wong, C. Y.; Tsui, A. Y. P.; Shum, D. K. Y.; Chan, Y. S.

10.1101/658997 — neuroscience — Posted on 2019-10-05

3313 Rapid, large-scale species discovery in hyperdiverse taxa using 1D MinION sequencing

Srivathsan, A.; Hartop, E.; Puniamoorthy, J.; Lee, W. T.; Kutty, S. N.; Kurina, O.; Meier, R.

10.1101/622365 — evolutionary biology — Posted on 2019-10-05

3314 Bad and good news for ash trees in Europe: alien pest Agrilus planipennis has spread to Ukraine and the south of European Russia, but serious damage of Fraxinus excelsior in the forests is not detected

Orlova-Bienkowskaja, M. J.; Drogvalenko, A. N.; Zabaluev, I. A.; Sazhnev, A. S.; Peregudova, E. Y.; Mazurov, S. G.; Komarov, E. V.; Bienkowski, A. O.

10.1101/689240 — ecology — Posted on 2019-10-05

3315 Spatially and temporally distinct encoding of muscle and kinematic information in rostral and caudal primary motor cortex.

Kolasinski, J.; Dima, D. C.; Mehler, D. M. A.; Stephenson, A.; Valadan, S.; Kusmia, S.; Rossiter, H. E.

10.1101/613323 — neuroscience — Posted on 2019-10-05

3316 Shh induces symmetry breaking in the presomitic mesoderm by inducing tissue shear and orientated cell rearrangements

Yin, J.; Saunders, T. E.

10.1101/589549 — developmental biology — Posted on 2019-10-05

3317 The role of land use types and water chemical properties in structuring the microbiomes of a connected lakes system

Marmen, S.; Blank, L.; Al-Ashhab, A.; Malik, A.; Ganzert, L.; Lalzar, M.; Grossart, H.-P.; Sher, D.

10.1101/401299 — microbiology — Posted on 2019-10-05

3318 Development of new food-sharing relationships among nonkin vampire bats

Carter, G. G.; Farine, D. R.; Crisp, R. J.; Vrtilek, J. K.; Ripperger, S.; Page, R.

10.1101/534321 — animal behavior and cognition — Posted on 2019-10-05

3319 Broadly Conserved Roles of TMEM-131 Family Proteins in Intracellular Collagen Assembly and Secretory Cargo Trafficking

Zhang, Z.; Bai, M.; Barbosa, G. O.; Chen, A.; Wei, Y.; Luo, S.; Wang, X.; Wang, B.; Tsukui, T.; LI, H.; Sheppard, D.; Kornberg, T.; Ma, D. K.

10.1101/794842 — cell biology — Posted on 2019-10-05

3320 Epidermal cell surface structure and chitin-protein co-assembly determine fiber architecture in the Locust cuticle

Sviben, S.; Spaeker, O.; Bennet, M.; Alberic, M.; Dirks, a.-H.; Moussian, B.; Fratzl, P.; Bertinetti, L.; Politi, Y.

10.1101/793992 — biophysics — Posted on 2019-10-05

3321 Control of brain state transitions with light

Barbero, A.; Riefolo, F.; Matera, C.; Claro, E.; Sanchez-Vives, M. V.; Gorostiza, P.

10.1101/793927 — neuroscience — Posted on 2019-10-05

3322 Muscle-derived Myoglianin regulates Drosophila melanogaster imaginal disc growth

Upadhyay, A.; Peterson, A. J.; O'Connor, M. B.

10.1101/793851 — developmental biology — Posted on 2019-10-05

3323 Amyloid precursor protein-b facilitates cell adhesion during early development in zebrafish

Abramsson, A.; Banote, R. K.; Chebli, J.; Satir, T. M.; Varshney, G. K.; Camacho, R.; Ledin, J.; Burgess, S. M.; Zetterberg, H.

10.1101/795187 — developmental biology — Posted on 2019-10-05

3324 Imaging FCS Delineates Subtle Heterogeneity in Plasma Membranes of Resting Mast Cells

Bag, N.; Holowka, D.; Baird, B.

10.1101/794248 — biophysics — Posted on 2019-10-05

3325 Structural effects and functional implications of phalloidin and jasplakinolide binding to actin filaments

Pospich, S.; Merino, F.; Raunser, S.

10.1101/794495 — biochemistry — Posted on 2019-10-05

3326 Microfluidic trapping of vesicles reveals membrane-tension dependent FtsZ cytoskeletal re-organisation

Ganzinger, K. A.; Merino-Salomon, A.; Garcia-Soriano, D. A.; Butterfield, A. N.; Litschel, T.; Siedler, F.; Schwille, P.

10.1101/791459 — synthetic biology — Posted on 2019-10-05

3327 Longitudinal study of persistence in professional development outcomes of early career biology faculty

Emery, N. C.; Maher, J. M.; Ebert-May, D.

10.1101/785857 — scientific communication and education — Posted on 2019-10-05

3328 Energy landscape steering in SecYEG mediates dynamic coupling in ATP driven protein translocation

Crossley, J.; Watson, M. A.; Fessl, T.; Watkins, D.; Corey, R. A.; Sabir, T.; Radford, S. E.; Collinson, I.; Tuma, R.

10.1101/793943 — biophysics — Posted on 2019-10-05

3329 Dynamics of Heat Shock Detection and Response in theIntestine of Caenorhabditis elegans

Dahlstrom, E. K.; Levine, E.

10.1101/794800 — biophysics — Posted on 2019-10-05

3330 A physics-based energy function allows the computational redesign of a PDZ domain

Opuu, V.; Sun, Y. J.; Hou, T.; Panel, N.; Ichikawa, D. M.; Corbi-Verge, C.; Kim, P. M.; Noyes, M.; Fuentes, E. J.; Simonson, T.

10.1101/790667 — biophysics — Posted on 2019-10-05

3331 Recombinant human soluble thrombomodulin is associated with attenuation of sepsis-induced renal impairment by inhibition of extracellular histone release

Akatsuka, M.; Masuda, Y.; Tatsumi, H.; Yamakage, M.

10.1101/780403 — pharmacology and toxicology — Posted on 2019-10-05

3332 Multiplexed code of navigation variables in the anterior limbic system

Laurens, J.; Abrego, A.; Cham, H.; Popeney, B.; Yu, Y.; Rotem, N.; Aarse, J.; Asprodini, E. K.; Dickman, J. D.; Angelaki, D. E.

10.1101/684464 — neuroscience — Posted on 2019-10-05

3333 Induction of hierarchy and time through one-dimensional probability space with certain topologies

Adachi, S.

10.1101/780882 — evolutionary biology — Posted on 2019-10-05

3334 Hierarchical Compression Reveals Sub-Second to Day-Long Structure in Larval Zebrafish Behaviour

Ghosh, M.; Rihel, J.

10.1101/694471 — neuroscience — Posted on 2019-10-05

3335 A new clustering method for building multiple trees using deep learning.

Tahiri, N.

10.1101/781252 — evolutionary biology — Posted on 2019-10-05

3336 Diffusion tubes: a method for the mass culture of ctenophores and other pelagic marine invertebrates

Patry, W. L.; Bubel, M. K.; Hansen, C.; Knowles, T.

10.1101/751099 — developmental biology — Posted on 2019-10-05

3337 Diagnostic value of circulating tumor DNA as an effective biomarker in cervical cancer: a meta-analysis

Wan, C.; Gu, Y.; Qiu, J.; Cui, Y.; Jiang, T.

10.1101/793869 — bioinformatics — Posted on 2019-10-04

3338 Reproducibility warning: The curious case of Polyethylene glycol 6000 and spheroid cell culture

Krol, S.; Serrati, S.; Martinelli, C.; Palazzo, A.; Iacobazzi, R. M.; Perrone, M.; Santoliquido, R.; Ong, Q. K.; Luo, Z.; Bekdemir, A.; Pinto, G.; Cavalleri, O.; Laquintana, V.; Denora, N.; Stellacci, F.; Cutrignelli, A.

10.1101/793828 — scientific communication and education — Posted on 2019-10-04

3339 Regional Disparities of Antenatal Care Utilization in Indonesia

Laksono, A. D.; Rukmini, R. D.; Wulandari, R. D.

10.1101/793802 — scientific communication and education — Posted on 2019-10-04

3340 Theory of neural coding predicts an upper bound on estimates of memory variability

Taylor, R.; Bays, P. M.

10.1101/793430 — neuroscience — Posted on 2019-10-04

3341 Methodological considerations on selection of stable reference genes for RT-qPCR in the neonatal rat brain in hypoxia and hypothermia

Bustelo, M.; Bruno, M.; Loidl, F.; Steinbusch, H.; Gavilanes, D.; van den Hove, D.

10.1101/793786 — molecular biology — Posted on 2019-10-04

3342 A LAMP at the end of the tunnel: a rapid, field deployable assay for the kauri dieback pathogen, Phytophthora agathidicida

Winkworth, R. C.; Nelson, B. C. W.; Bellgard, S. E.; Probst, C. M.; McLenachan, P. A.; Lockhart, P. J.

10.1101/793844 — microbiology — Posted on 2019-10-04

3343 Genetic and physical interaction of Drosophila Ino80 with Polycomb Responsive Element

Ghasemi, M.; Maini, J.; Jain, S.; Dasari, V.; Mishra, R.; Brahmachari, V.

10.1101/793778 — developmental biology — Posted on 2019-10-04

3344 Education influences knowledge about environmental issues in Washington, DC, USA

Richardson, M.; Milton, A.; Harrison, E.

10.1101/793810 — ecology — Posted on 2019-10-04

3345 Heart rate variability as an indicator of autonomic nervous system disturbance in tetanus

Duong, H. T. H.; Abebe Tadesse, G.; Nhat, P. T. H.; Hao, N. V.; Prince, J.; Duong, T. D.; Kien, T. T.; Tan, L. V.; Pugh, C.; Loan, H. T.; Nguyen, C.; Yen, L. M.; Zhu, T.; Clifton, D.; Thwaites, C. L.

10.1101/793497 — pathology — Posted on 2019-10-04

3346 Circuit mechanisms underlying chromatic encoding in Drosophila photoreceptors

Heath, S. L.; Christenson, M. P.; Oriol, E.; Saavedra-Weisenhaus, M.; Kohn, J. R.; Behnia, R.

10.1101/790295 — neuroscience — Posted on 2019-10-04

3347 Targeting the Pregnane X Receptor Using Microbial Metabolite Mimicry

Dvorak, Z.; Felix Kopp, F.; Costello, C. M.; Kemp, J. S.; Li, H.; Vrzalova, A.; Stepankova, M.; Iveta Bartonkov, I.; Poulikova, K.; Vyhlidalova, B.; Nordstroem, L. U.; Karunaratne, C.; Ranhotra, H.; Mun, K. S.; Naren, A. P.; Murray, I.; Perdew, G. H.; Brtko, J.; Toporova, L.; Schon, A.; Wallace, B.; Walton, W. G.; Redinbo, M. R.; Sun, K.; Beck, A.; Kortagere, S.; Neary, M. C.; Chandran, A.; Vishveshwara, S.; Cavalluzzi, M. M.; Lentini, G.; Cui, J. Y.; Gu, H.; March, J. C.; Chaterjee, S.; Matson, A.; Wright, D.; Flannigan, K. L.; Hirota, S. A.; Mani, S.

10.1101/792671 — biochemistry — Posted on 2019-10-04

3348 Faecal virome transplantation decrease symptoms of type-2-diabetes and obesity in a murine model

Rasmussen, T. S.; Mentzel, C. M. J.; Kot, W.; Castro-Mejia, J. L.; Zuffa, S.; Swann, J. R.; Hansen, L. H.; Vogensen, F. K.; Hansen, A. K.; Nielsen, D. S.

10.1101/792556 — microbiology — Posted on 2019-10-04

3349 Development of a multiparent advanced generation intercross (MAGIC) population for genetic exploitation of complex traits in Brassica juncea: glucosinolate content as an example

Wang, T.; Wan, W.; Yu, K.; Nawaz Khattak, A.; Ye, B.; Yang, R.; Tian, E.

10.1101/793331 — genetics — Posted on 2019-10-04

3350 SCRIBE: a new approach to dropout imputation and batch effects correction for single-cell RNA-seq data

Zhang, Y.; Liang, K.; Liu, M.; Li, Y.; Ge, H.; Zhao, H.

10.1101/793463 — bioinformatics — Posted on 2019-10-04

3351 Human hepatic tryptophan 2,3-dioxygenase ubiquitin-dependent protein degradation: The critical role of its exosite as the molecular lynchpin of its substrate-mediated protein stabilization

Kim, S.-M.; Liu, Y.; Wang, Y.; Karkashon, S.; Lewis-Ballester, A.; Yeh, S.-R.; Correia, M. A.

10.1101/793380 — biochemistry — Posted on 2019-10-04

3352 Dietary carotenoid supplementation facilitates egg laying in a wild passerine

Garcia-Campa, J.; Muller, W.; Gonzalez-Braojos, S.; Garcia-Juarez, E.; Morales, J.

10.1101/792234 — animal behavior and cognition — Posted on 2019-10-04

3353 Reducing shade avoidance can improve Arabidopsis canopy performance against competitors

Pantazopoulou, C. K.; Bongers, F. J.; Pierik, R.

10.1101/792283 — plant biology — Posted on 2019-10-04

3354 Investigating the Influence of the Brain-Derived Neurotrophic Factor Val66Met Single Nucleotide Polymorphism on Familiarity and Recollection Event-Related Potentials

McKay, N. S.; Moreau, D.; Corballis, P. M.; Kirk, I. J.

10.1101/793356 — neuroscience — Posted on 2019-10-04

3355 The genetics of male pheromone preference difference between Drosophila melanogaster and D. simulans

Shahandeh, M.; Pischedda, A.; Rodriguez, J. M.; Turner, T. L.

10.1101/793315 — genetics — Posted on 2019-10-04

3356 Defining epidermal basal cell states during skin homeostasis and wound healing using single-cell transcriptomics

Haensel, D. W.; Jin, S.; Cinco, R.; Sun, P.; Nguyen, Q.; Cang, Z.; Dragan, M.; Gong, Y.; MacLean, A. L.; Kessenbrock, K. L.; Gratton, E.; Nie, Q.; Dai, X.

10.1101/793117 — developmental biology — Posted on 2019-10-04

3357 Ancient genomes reveal early Andean farmers selected common beans while preserving diversity

Trucchi, E.; Benazzo, A.; Lari, M.; Iob, A.; Vai, S.; Nanni, L.; Bellucci, E.; Bitocchi, E.; Xu, C.; Jackson, S. A.; Lema, V.; Babot, P.; Oliszewski, N.; Gil, A.; Neme, G.; Michieli, T. C.; De Lorenzi, M.; Calcagnile, L.; Caramelli, D.; Star, B.; de Boer, H.; Boessenkool, S.; Papa, R.; Bertorelle, G.

10.1101/791806 — genomics — Posted on 2019-10-04

3358 Chromosome-wide distribution and characterization of intersubspecific meiotic noncrossovers in mice

Gergelits, V.; Parvanov, E.; Simecek, P.; Forejt, J.

10.1101/792226 — genetics — Posted on 2019-10-04

3359 Novel molecular targets for treating alcohol use disorder and hepatotoxicity

Gray, J. C.; Murphy, M.; Leggio, L.

10.1101/791723 — genetics — Posted on 2019-10-04

3360 Plexin-B2 is a key regulator of cell mechanics during multicellular organization

Junqueira Alves, C.; Dariolli, R.; Hannah, T.; Wiener, R. J.; Daviaud, N.; Tejero, R.; Luca Gusella, G.; Tsankova, N. M.; Alves Dias, R.; RF de Mendonca, J. P.; Azeloglu, E. U.; Friedel, R. H.; Zou, H.

10.1101/792077 — developmental biology — Posted on 2019-10-04

3361 Salt Inducible Kinases as Novel Notch Interactors in the Developing Drosophila Retina

Sahin, H. B.; Sayin, S.; Bugra Bilge, K.; Celik, A.

10.1101/786004 — developmental biology — Posted on 2019-10-04

3362 Saak Transform-Based Machine Learning for Light-Sheet Imaging of Cardiac Trabeculation

Ding, Y.; Gudapati, V.; Lin, R.; Fei, Y.; Song, S.; Chang, C.-C.; Baek, K. I.; Wang, Z.; Roustaei, M.; Kuang, D.; Kuo, C.- C. J.; Hsiai, T. K.

10.1101/793182 — bioengineering — Posted on 2019-10-04

3363 A Bayesian Non-parametric Mixed-Effects Model of MicrobialPhenotypes

Tonner, P. D.; Darnell, C. L.; Bushell, F. M.; Lund, P. A.; Schmid, A. K.; Schmidler, S. C.

10.1101/793174 — systems biology — Posted on 2019-10-04

3364 Policy should change to improve invited speaker diversity and reflect trainee diversity

Hagan, A. K.; Pollet, R. M.; Libertucci, J.

10.1101/785717 — scientific communication and education — Posted on 2019-10-04

3365 Skilled strategies of release parameters for accurate free-throw shooting in the presence of motor noise

Nakano, N.; Inaba, Y.; Fukashiro, S.; Yoshioka, S.

10.1101/793513 — neuroscience — Posted on 2019-10-04

3366 Antiviral signalling in human IPSC-derived neurons recapitulates neurodevelopmental disorder phenotypes

Warre Cornish, K.; Perfect, L.; Nagy, R.; Reid, M. J.; Mueller, A.; Evans, A.; Ghevaert, C.; McAlonan, G.; Loth, E.; Murphy, D.; Srivastava, D. P.; Price, J.

10.1101/789321 — neuroscience — Posted on 2019-10-04

3367 Pal stabilises the bacterial outer membrane during constriction by a mobilisation-and-capture mechanism

Szczepaniak, J.; Holmes, P.; Rajasekar, K.; Kaminska, R.; Samsudin, F.; Inns, P. G.; Rassam, P.; Khalid, S.; Murray, S. M.; Redfield, C.; Kleanthous, C.

10.1101/790931 — microbiology — Posted on 2019-10-04

3368 Phylogenetic relationships of heteroscleromorph demosponges and the affinity of the genus Myceliospongia (Demospongiae incertae sedis)

Lavrov, D. V.; Maldonado, M.; Perez, T.; Morrow, C.

10.1101/793372 — genomics — Posted on 2019-10-04

3369 A new clustering method for building multiple trees using deep learning.

Tahiri, N.

10.1101/781252 — evolutionary biology — Posted on 2019-10-04

3370 No evidence for motion dazzle in an evolutionary citizen science game

Hughes, A. E.; Griffiths, D.; Troscianko, J.; Kelley, L. A.

10.1101/792614 — evolutionary biology — Posted on 2019-10-04

3371 Genome Elimination Mediated by Gene Expression from a Selfish Chromosome

Dalla Benetta, E.; Antoshechkin, I.; Yang, T.; Nguyen, H. Q. M.; Ferree, P. M.; Akbari, O. s.

10.1101/793273 — evolutionary biology — Posted on 2019-10-04

3372 Woody plants constructing tundra soils

Kemppinen, J.; Niittynen, P.; Virkkala, A.-M.; Happonen, K.; Riihimaki, H.; Aalto, J.; Luoto, M.

10.1101/789743 — ecology — Posted on 2019-10-04

3373 Further Exploration of the SAR of Imidazoquinolines; Identification of Potent C7 Substituted Imidazoquinolines

Hunt, J.; Kleindl, P. A.; Moulder, R.; Prisinzano, T. E.; Forrest, M. L.

10.1101/793232 — bioengineering — Posted on 2019-10-04

3374 Precise hyperacuity estimation of spike timing from calcium imaging

Hoang, H.; Sato, M.-a.; Shinomoto, S.; Tsutsumi, S.; Hashizume, M.; Ishikawa, T.; Kano, M.; Ikegaya, Y.; Kitamura, K.; Kawato, M.; Toyama, K.

10.1101/790600 — neuroscience — Posted on 2019-10-04

3375 Bulked segregant RNA-Seq reveals differential genes and non-synonymous genetic variants linked to sucrose accumulation in sugarcane

Banerjee, N.; Kumar, S.

10.1101/792218 — genetics — Posted on 2019-10-04

3376 Structure-Based Function Prediction using Graph Convolutional Networks

Gligorijevic, V.; Renfrew, P. D.; Kosciolek, T.; Leman, J. K.; Cho, K.; Vatanen, T.; Berenberg, D.; Taylor, B. C.; Fisk, I. M.; Xavier, R. J.; Knight, R.; Bonneau, R. A.

10.1101/786236 — bioinformatics — Posted on 2019-10-04

3377 Gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure

Zrimec, J.; Buric, F.; Muhammad, A. S.; Chen, R.; Verendel, V.; Topel, M.; Zelezniak, A.

10.1101/792531 — systems biology — Posted on 2019-10-04

3378 Live imaging-assisted domain-specific CRISPR genome editing at single cell resolution in plants

Li, T.; Yan, A.; Meyerowitz, E. M.

10.1101/793240 — plant biology — Posted on 2019-10-04

3379 Not all MDAs should be created equal-determinants of MDA impact and designing MDAs towards malaria elimination

Gao, B.; Saralamba, S.; Lubell, Y.; Dondorp, A. M.; White, L.; Aguas, R.

10.1101/793505 — physiology — Posted on 2019-10-04

3380 Aberrant connectivity in auditory precision encoding in schizophrenia spectrum disorder and across the continuum of psychotic-like experiences

Larsen, K. M.; Dzafic, I.; Darke, H.; Pertile, H.; Carter, O. L.; Sundram, S.; Garrido, M.

10.1101/792473 — neuroscience — Posted on 2019-10-04

3381 Construction of habitat-specific training sets to achieve species-level assignment in 16S rRNA gene datasets

Escapa, I. F.; Huang, Y.; Chen, T.; Lin, M.; Kokaras, A.; Dewhirst, F. E.; Lemon, K. P.

10.1101/791574 — microbiology — Posted on 2019-10-04

3382 Development of Candida auris microsatellite typing and its application on a global collection of isolates

de Groot, T.; Puts, Y.; Berrio, I.; Chowdhary, A.; Meis, J.

10.1101/792663 — microbiology — Posted on 2019-10-04

3383 Reward-based improvements in motor control are driven by multiple error-reducing mechanisms

Codol, O.; Holland, P. J.; Manohar, S. G.; Galea, J. M.

10.1101/792598 — neuroscience — Posted on 2019-10-04

3384 Anterior cingulate cortex activity regulates effort-based decision making

Hart, E. E.; Blair, G. J.; O'Dell, T. J.; Blair, H. T.; Izquierdo, A.

10.1101/792069 — neuroscience — Posted on 2019-10-04

3385 Self-Incompatibility Alleles in Iranian Pear Cultivars

Bagheri, M.; Ershadi, A.

10.1101/792507 — molecular biology — Posted on 2019-10-04

3386 Single-cell transcriptome profiling reveals neutrophil heterogeneity and orchestrated maturation during homeostasis and bacterial infection

Xie, X.; Shi, Q.; Wu, P.; Zhang, X.; Kambara, H.; Su, J.; Yu, H.; Park, S.-Y.; Guo, R.; Ren, Q.; Zhang, S.; Xu, Y.; Silberstein, L. E.; Cheng, T.; Ma, F.; Li, C.; Luo, H. R.

10.1101/792200 — immunology — Posted on 2019-10-04

3387 The consequences of surviving infection across the metamorphic boundary: tradeoff insights from RNAseq and life history measures

Keehnen, N. L. P.; Kucerova, L.; Nylin, S.; Theopold, U.; Wheat, C. W.

10.1101/792176 — evolutionary biology — Posted on 2019-10-04

3388 Metabarcoding unsorted kick-samples facilitates macroinvertebrate-based biomonitoring with increased taxonomic resolution, while outperforming environmental DNA

Pereira da Conceicoa, L.; Elbrecht, V.; Hall, A. C.; Briscoe, A.; Barber-James, H.; Price, B.

10.1101/792333 — ecology — Posted on 2019-10-04

3389 Ocular hypertension drives remodeling of AMPA receptors in select populations of retinal ganglion cells

Sladek, A. L.; Nawy, S.

10.1101/743559 — neuroscience — Posted on 2019-10-04

3390 Hippocampal neural stem cells facilitate access from circulation via apical cytoplasmic processes

Licht, T.; Keshet, E.

10.1101/792192 — neuroscience — Posted on 2019-10-04

3391 Deep Generative Models for Detecting Differential Expression in Single Cells

Boyeau, P.; Lopez, R.; Regier, J.; Gayoso, A.; Jordan, M. I.; Yosef, N.

10.1101/794289 — cell biology — Posted on 2019-10-04

3392 Fibroblast-specific genome-scale modelling predicts an imbalance in amino acid metabolism in Refsum disease

Wegrzyn, A. B.; Herzog, K.; Gerding, A.; Kwiatkowski, M.; Wolters, J. C.; Dolga, A. M.; van Lint, A. E. M.; Wanders, R. J. A.; Waterham, H. R.; Bakker, B. M.

10.1101/776575 — systems biology — Posted on 2019-10-04

3393 Interferon-responsive genes are targeted during the establishment of human cytomegalovirus latency

Elder, E. G.; Krishna, B. A.; Williamson, J.; Lim, E. Y.; Poole, E.; Sedikides, G. X.; O'Connor, C. M.; Wills, M.; Lehner, P. J.; Sinclair, J.

10.1101/791673 — microbiology — Posted on 2019-10-04

3394 Adhesion-free cell migration by topography-based force transduction

Reversat, A.; Merrin, J.; Hauschild, R.; De Vries, I.; Piel, M.; Callan-Jones, A.; Voituriez, R.; Sixt, M.

10.1101/793919 — cell biology — Posted on 2019-10-04

3395 Two XMAP215/TOG microtubule polymerases, Alp14 and Dis1, play non-exchangeable, distinct roles in microtubule organisation in fission yeast

Yukawa, M.; Kawakami, T.; Pinder, C.; toda, t.

10.1101/793489 — cell biology — Posted on 2019-10-04

3396 Prohibitin depletion suppresses mitochondrial, lipogenic and autophagic defects of SGK-1 mutant extending lifespan; implication of autophagy and the UPRmt

Hernando-Rodriguez, B.; Perez-Jimenez, M. M.; Rodriguez-Palero, M. J.; Pla, A.; Martinez-Bueno, M. D.; de la Cruz Ruiz, P.; Gatsi, R.; Artal-Sanz, M.

10.1101/792465 — cell biology — Posted on 2019-10-04

3397 Alpha-ketoglutarate, an endogenous metabolite, extends lifespan and compresses morbidity in aging mice

Asadi Shahmirzadi, A.; Edgar, D.; Liao, C.-Y.; Hsu, Y.-M.; Lucanic, M.; Asadi Shahmirzadi, A.; Wiley, C.; Riley, R.; Gan, G.; Kuehnemann, C.; Bhaumik, D.; Lithgow, G. J.; Kennedy, B. K.

10.1101/779157 — cell biology — Posted on 2019-10-04

3398 B cells extract antigens using Arp2/3-generated actin foci interspersed with linear filaments

Roper, S. I.; Wasim, L.; Malinova, D.; Way, M.; Cox, S.; Tolar, P.

10.1101/792481 — immunology — Posted on 2019-10-04

3399 A Highly Conserved Shh Enhancer Coordinates Hypothalamic and Craniofacial Development

Crane-Smith, Z.; Schoenebeck, J.; Graham, K. A.; Devenney, P. S.; Rose, L.; Ditzell, M.; Klenin, N.; Kurrasch, D. M.; Lettice, L. A.; Hill, R.

10.1101/794198 — developmental biology — Posted on 2019-10-04

3400 Premature arterial stiffening in Hutchinson-Gilford Progeria Syndrome linked to early induction of Lysyl Oxidase (LOX) and corrected by LOX inhibition

von Kleeck, R.; Brankovic, S. A.; Roberts, I.; Hawthorne, E. A.; Bruun, K.; Castagnino, P.; Assoian, R. K.

10.1101/773184 — molecular biology — Posted on 2019-10-04

3401 Abrogation of pathogenic attributes in drug resistant Candida auris strains by farnesol

Srivastava, V.; Ahmad, A.

10.1101/792168 — microbiology — Posted on 2019-10-04

3402 Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses

Zhang, H.; Ahearn, T.; Lecarpentier, J.; Barnes, D.; Beesley, J.; Qi, G.; Jiang, X.; O'Mara, T. A.; Zhao, N.; Bolla, M. K.; Dunning, A. M.; Dennis, J.; Wang, Q.; Abu Ful, Z.; Aittomaki, K.; Andrulis, I. L.; Anton-Culver, H.; Arndt, V.; Aronson, K. J.; Arun, B. K.; Auer, P. L.; Azzollini, J.; Barrowdale, D.; Becher, H.; Beckmann, M. W.; Behrens, S.; Benitez, J.; Bermisheva, M.; Bialkowska, K.; Blanco, A.; Blomqvist, C.; Bogdanova, N. V.; Bojesen, S. E.; Bonanni, B.; Bondavalli, D.; Borg, A.; Brauch, H.; Brenner, H.; Briceno, I.; Broeks, A.; Brucker, S. Y.; Bruning, T.; Burwinkel, B.; Buys, S.

10.1101/778605 — genetics — Posted on 2019-10-04

3403 Systematic assessment of regulatory effects of human disease variants in pluripotent cells

Bonder, M. J.; Smail, C.; Gloudemans, M. J.; Fresard, L.; Jakubosky, D.; D'Antonio, M.; Li, X.; Ferraro, N. M.; Carcamo-Orive, I.; Mirauta, B.; Seaton, D. D.; Cai, N.; Horta, D.; HipSci Consortium, ; iPSCORE Consortium, ; GENESiPS Consortium, ; PhLiPS Consortium, ; Smith, E. N.; Frazer, K. A.; Montgomery, S. B.; Stegle, O.

10.1101/784967 — genomics — Posted on 2019-10-04

3404 Direct-fit to nature: an evolutionary perspective on biological (and artificial) neural networks

Hasson, U.; Nastase, S. A.; Goldstein, A.

10.1101/764258 — neuroscience — Posted on 2019-10-04

3405 Rap-protein paralogs of B. thuringiensis: a multifunctional and redundant regulatory repertoire for the control of collective functions.

Gastelum, G.; de la Torre, M.; Rocha, J.

10.1101/784611 — microbiology — Posted on 2019-10-04

3406 Machine Source Localization of Tursiops Truncatus Whistle-like Sounds in a Reverberant Aquatic Environment

Woodward, S. F.; Reiss, D.; Magnasco, M.

10.1101/606673 — biophysics — Posted on 2019-10-04

3407 Encapsulation boosts islet-cell signature in differentiating human induced pluripotent stem cells via integrin signalling

Vethe, H.; Legoy, T. A.; Abadpour, S.; Strand, B. L.; Scholz, H.; Paulo, J. A.; Raeder, H.; Ghila, L. M.; Chera, S.

10.1101/791442 — molecular biology — Posted on 2019-10-04

3408 Virtual reality as a tool for environmental conservation and fundraising

Nelson, K. M.; Schlueter, A.; Anggraini, E.

10.1101/785014 — scientific communication and education — Posted on 2019-10-04

3409 Alanine, arginine, and proline but not glutamine are the feed-back regulators in the liver-alpha cell axis in mice

Galsgaard, K. D.; Jepsen, S. L.; Kjeldsen, S.; Svendsen, B.; Pedersen, J.; Wewer Albrechtsen, N. J.; Holst, J. J.

10.1101/792119 — physiology — Posted on 2019-10-04

3410 Assembly of novel, nuclear dimers of the PI3-Kinase regulatory subunits underpins the pro-proliferative activity of the Cdc42-activated tyrosine kinase, ACK

Clayton, N. S.; Fox, M.; Vicente-Garcia, J. J.; Schroeder, C. M.; Littlewood, T. D.; Wilde, J. I.; Corry, J.; Krishnan, K.; Zhang, Q.; Wakelam, M. J. O.; Brown, M. J.; Crafter, C.; Mott, H. R.; Owen, D.

10.1101/791277 — molecular biology — Posted on 2019-10-04

3411 Sequence-Dependent Dynamics of Synthetic and Endogenous RSSs in V(D)J Recombination

Hirokawa, S.; Chure, G.; Belliveau, N. M.; Lovely, G. A.; Anaya, M.; Schatz, D. G.; Baltimore, D.; Phillips, R.

10.1101/791954 — immunology — Posted on 2019-10-04

3412 Beneficial bacteria activate type-I interferon production via the cytosolic sensors STING and MAVS

Gutierrez-Merino, J.; Isla, B.; Combes, T.; Martinez-Estrada, F. O.; Maluquer de Motes, C.

10.1101/792523 — immunology — Posted on 2019-10-04

3413 Beyond the ecology of fear: non-lethal effects of predators are strong whereas those of parasites are diverse

Daversa, D. R.; Hechinger, R. F.; Madin, E.; Fenton, A.; Dell, A. I.; Ritchie, E.; Rohr, J.; Rudolph, V. H. W.

10.1101/766477 — ecology — Posted on 2019-10-04

3414 SCryPTA - SAS Crystallographic Peak Treatment and Analysis: A web-based platform for analyzing Small Angle Scattering curves of lyotropic liquid crystals.

Castro, R. D. d.; Casadei, B. R.; Santana, B. V.; Lotierzo, M.; Oliveira, N. F.; Malheiros, B.; Kaminski, R. C. K.; Barbosa, L. R. S.

10.1101/791848 — biophysics — Posted on 2019-10-04

3415 Flexible Fitting of Biomolecular Structures to Atomic Force Microscopy Images via Biased Molecular Simulations

Niina, T.; Fuchigami, S.; Takada, S.

10.1101/793901 — biophysics — Posted on 2019-10-04

3416 Cell-to-cell expression dispersion of B-cell surface proteins displays genetic variation among humans

Triqueneaux, G.; Burny, C.; Symmons, O.; Janczarski, S.; Gruffat, H.; Yvert, G.

10.1101/792606 — genetics — Posted on 2019-10-04

3417 Development of a lipid-based delivery system for the chemotherapeutic compound SN-38

Danelon, C.; Soler Canton, A.; van den Broek, N.

10.1101/792317 — biochemistry — Posted on 2019-10-04

3418 Sphingomyelinase disables Piezo1 channel inactivation to enable sustained response to mechanical force

Shi, J.; Hyman, A. J.; De Vecchis, D.; Chong, J.; Lichtenstein, L.; Futers, S. T.; Rouahi, M.; Negre-Salvayre, A.; Auge, N.; Kalli, A. C.; Beech, D. J.

10.1101/792564 — physiology — Posted on 2019-10-04

3419 Plasmodium falciparum immunodominant IgG epitopes in subclinical malaria

Azcarate, I. G.; Marin-Garcia, P.; Abad, P.; Perez-Benavente, S.; Paz-Artal, E.; Reche, P. A.; Fobil, J. N.; Rubio, J. M.; Diez, A.; Puyet, A.; Bautista, J. M.

10.1101/792499 — microbiology — Posted on 2019-10-04

3420 Weighted burden analysis of exome-sequenced late onset Alzheimer’s cases and controls provides further evidence for a role for PSEN1 and suggest involvement of the PI3K/Akt/GSK-3β and WNT signalling pathways

Curtis, D.; Bakaya, K.; Sharma, L.; Bandyopadhyay, S.

10.1101/596007 — genetics — Posted on 2019-10-04

3421 Microvasculopathy, Luminal Calcification and Premature Aging in Fetuin-A Deficient Mice

Herrmann, M.; Babler, A.; Moshkova, I.; Gremse, F.; Kiessling, F.; Kusebauch, U.; Nelea, V.; Kramann, R.; Moritz, R. L.; McKee, M. D.; Jahnen-Dechent, W.

10.1101/577098 — physiology — Posted on 2019-10-04

3422 Neural Correlates of Causal Confounding

Liljeholm, M.

10.1101/395707 — neuroscience — Posted on 2019-10-04

3423 High-throughput prediction of MHC Class I and Class II neoantigens with MHCnuggets

Shao, X. M.; Bhattacharya, R.; Huang, J.; Sivakumar, I. K. A.; Tokheim, C.; Zheng, L.; HIrsch, D.; Kaminow, B.; Omdahl, A.; Bonsack, M.; Riemer, A. B.; Velculescu, V.; Anagnostou, V.; Pagel, K.; Karchin, R.

10.1101/752469 — immunology — Posted on 2019-10-04

3424 Visual body form and orientation cues do not modulate visuo-tactile temporal integration

Smit, S.; Rich, A. N.; Zopf, R.

10.1101/647594 — neuroscience — Posted on 2019-10-04

3425 Latitudinal variation in circadian rhythmicity in Nasonia vitripennis

Paolucci, S.; Dalla Benetta, E.; Salis, L.; Dolezel, D.; van de Zande, L.; Beukeboom, L.

10.1101/594606 — evolutionary biology — Posted on 2019-10-04

3426 The geometry of abstraction in hippocampus and prefrontal cortex

Bernardi, S.; Benna, M. K.; Rigotti, M.; Munuera, J.; Fusi, S.; Salzman, D.

10.1101/408633 — neuroscience — Posted on 2019-10-04

3427 DiscoSnp-RAD: de novo detection of small variants for population genomics

Gauthier, J.; Mouden, C.; Suchan, T.; Alvarez, N.; Arrigo, N.; Riou, C.; Lemaitre, C.; Peterlongo, P.

10.1101/216747 — bioinformatics — Posted on 2019-10-04

3428 Control of cytokinesis by β-adrenergic receptors indicates an approach for regulating cardiomyocyte endowment

Liu, H.; Zhang, C.-H.; Ammanamanchi, N.; Suresh, S.; Lewarchik, C.; Rao, K.; Uys, G. M.; Han, L.; Abrial, M.; Yimlamai, D.; Ganapathy, B.; Guillermier, C.; Chen, N.; Khaladkar, M.; Spaethling, J.; Eberwine, J. H.; Kim, J.; Walsh, S.; Choudhury, S.; Little, K.; Francis, K.; Sharma, M.; Viegas, M.; Bais, A.; Kostka, D.; Ding, J.; Bar-Joseph, Z.; Wu, Y.; Steinhauser, M. L.; Kuhn, B.

10.1101/782920 — cell biology — Posted on 2019-10-04

3429 Expression profiling of single cells and patient cohorts identifies multiple immunosuppressive pathways and an altered natural killer cell phenotype in glioblastoma

Close, H. J.; Stead, L. F.; Nsengimana, J.; Reilly, K.; Droop, A.; Wurdak, H.; Mathew, R. K.; Corns, R.; Newton-Bishop, J. A.; Melcher, A. A.; Short, S. C.; Cook, G. P.; Wilson, E. B.

10.1101/792846 — immunology — Posted on 2019-10-04

3430 Generation of nanometer-size aggregates using Solubility Controlling Peptide tags and their ability to increase a proteins immunogenicity in vivo

RAHMAN, N.; ISLAM, M. M.; UNZAI, S.; MIURA, S.; KURODA, Y.

10.1101/793687 — immunology — Posted on 2019-10-04

3431 Differential antitumor activity of compounds targeting the ubiquitin-proteasome machinery in gastrointestinal stromal tumors (GIST)

Rausch, J. L.; Ali, A. A.; Lee, D. M.; Gebreyohannes, Y. K.; Mehalek, K. R.; Agha, A.; Patil, S. S.; Tolstov, Y.; Wellens, J.; Dhillon, H. S.; Makielski, K. R.; Debiec-Rychter, M.; Schoeffski, P.; Wozniak, A.; Duensing, A.

10.1101/791426 — cancer biology — Posted on 2019-10-04

3432 Differential degradation of RNA species by autophagy related pathways in plants

Hickl, D.; Drews, F.; Girke, C.; Zimmer, D.; Muehlhaus, T.; Hauth, J.; Nordstroem, K.; Trentmann, O.; Neuhaus, E.; Fehlmann, T.; Keller, A.; Simon, M.; Moehlmann, T.

10.1101/793950 — plant biology — Posted on 2019-10-04

3433 The Medicago truncatula DREPP protein triggers microtubule fragmentation in membrane nanodomains during symbiotic infections

Su, C.; Klein, M.-L.; Hernandez-Reyes, C.; Batzenschlager, M.; Ditengou, F. A.; Keller, J.; Delaux, P.-M.; Ott, T.

10.1101/794008 — plant biology — Posted on 2019-10-04

3434 Combining free energy simulations and NMR chemical-shift perturbation to identify transient cation-π contacts in proteins

Reis, A. A. O.; Sayegh, R. S. R.; Marana, S. R.; Arantes, G. M.

10.1101/793984 — biophysics — Posted on 2019-10-04

3435 Dual-targeted transcription factors are required for optimal photosynthesis and stress responses in Arabidopsis thaliana

Gawronski, P.; Burdiak, P.; Scharff, L. B.; Mielecki, J.; Zaborowska, M.; Waszczak, C.; Karpinski, S.

10.1101/793968 — plant biology — Posted on 2019-10-04

3436 Long non-coding RNA gene regulation and trait associations across human tissues

de Goede, O. M.; Ferraro, N. M.; Nachun, D. C.; Rao, A.; Aguet, F.; Barbeira, A. N.; Castel, S. E.; Kim-Hellmuth, S.; Park, Y.; Scott, A. J.; Strober, B. J.; GTEx Consortium, ; Brown, C. D.; Wen, X.; Hall, I. M.; Battle, A.; Lappalainen, T.; Im, H. K.; Ardlie, K. G.; Quertermous, T.; Kirkegaard, K.; Montgomery, S. B.

10.1101/793091 — genetics — Posted on 2019-10-04

3437 Membrane stiffness is a key determinant of E coli MscS channel mechanosensitivity

Xue, F.; Cox, C. D.; Bavi, N.; Rohde, P. R.; Nakayama, Y.; Martinac, B.

10.1101/790501 — biophysics — Posted on 2019-10-04

3438 Rapid disruption of the cortical microcirculation after mild traumatic brain injury

Witkowski, E. D.; Erdener, S. E.; Kılıc, K.; Kura, S.; Tang, J.; Postnov, D. D.; Lee, E.; Kong, S.; Boas, D. A.; Davison, I. G.

10.1101/788455 — neuroscience — Posted on 2019-10-04

3439 Minimal in vivo requirements for developmentally regulated cardiac long intergenic non-coding RNAs

George, M.; Duan, Q.; Nagle, A.; Kathiriya, I.; Huang, Y.; Rao, K.; Haldar, S.; Bruneau, B.

10.1101/793257 — developmental biology — Posted on 2019-10-04

3440 DNA-dependent protein kinase promotes DNA end processing by MRN and CtIP

Deshpande, R.; Myler, L.; Soniat, M.; Makharashvili, N.; Lee, L.; Lees-Miller, S.; Finkelstein, I.; Paull, T. T.

10.1101/395731 — molecular biology — Posted on 2019-10-04

3441 An Erwinia amylovora inducible promoter for intragenic improvement of apple fire blight resistance

Gaucher, M.; Righetti, L.; Aubourg, S.; Duge de Bernonville, T.; Brisset, M.-N.; Chevreau, E.; Vergne, E.

10.1101/767772 — bioengineering — Posted on 2019-10-04

3442 Intracellular dynamics of CA3 pyramidal cells underlie changes in firing output during theta and large irregular activity

Malezieux, M.; Kees, A. L.; Mulle, C.

10.1101/652461 — neuroscience — Posted on 2019-10-04

3443 Global Genetic Cartography of Urban Metagenomes andAnti-Microbial Resistance

Danko, D. C.; Bezdan, D.; Afshinnekoo, E.; Ahsanuddin, S.; Alicea, J.; Bhattacharya, C.; Bhattacharyya, M.; Blekhman, R.; Butler, D. J.; Castro-Nallar, E.; Canas, A. M.; Chatziefthimiou, A. D.; Chng, K. R.; Coil, D. A.; Court, D. S.; Crawford, R. W.; Desnues, C.; Dias-Neto, E.; Donnellan, D.; Dybwad, M.; Eisen, J. A.; Elhaik, E.; Ercolini, D.; De Filippis, F.; Frolova, A.; Graf, A. B.; Green, D. C.; Lee, P. K. H.; Hecht, J.; Hernandez, M.; Jang, S.; Kahles, A.; Karasikov, M.; Knights, K.; Kyrpides, N. C.; Ljungdahl, P.; Lyons, A.; Mason-Buck, G.; McGrath, K.; Mongodin, E. F.; Mustafa, H.; Muta

10.1101/724526 — microbiology — Posted on 2019-10-04

3444 A least microenvironmental uncertainty principle (LEUP) as a generative model of collective cell migration mechanisms.

Barua, A.; Navas Sedeno, J. M.; Hatzikirou, H.

10.1101/404889 — biophysics — Posted on 2019-10-04

3445 Population Dynamics and Biological Feasibility of Sustainable Harvesting as a Conservation Strategy for Tropical and Temperate Freshwater Turtles

Rachmansah, A.; Norris, D.; Gibbs, J. P.

10.1101/786806 — zoology — Posted on 2019-10-04

3446 Optimal bang--bang feedback for bursty gene expression

Zabaikina, I.; Bokes, P.; Singh, A.

10.1101/793638 — systems biology — Posted on 2019-10-04

3447 Expanding functional protein sequence space using generative adversarial networks

Repecka, D.; Jauniskis, V.; Karpus, L.; Rembeza, E.; Zrimec, J.; Rokaitis, I.; Poviloniene, S.; Laurynenas, A.; Abuajwa, W.; Savolainen, O.; Meskys, R.; Engqvist, M. K.; Zelezniak, A.

10.1101/789719 — synthetic biology — Posted on 2019-10-04

3448 Optimizing auditory brainstem response acquisition using interleaved frequencies

Buran, B. N.; Elkins, S.; Kempton, J. B.; Porsov, E. V.; Brigande, J. V.; David, S. V.

10.1101/781831 — neuroscience — Posted on 2019-10-04

3449 Microbiota supplementation with Bifidobacterium and Lactobacillus modifies the preterm infant gut microbiota and metabolome

Alcon-Giner, C.; Dalby, M.; Caim, S.; Ketskemety, J.; Shaw, A.; Sim, K.; Lawson, M.; Kiu, R.; Leclaire, C.; Chalklen, L.; Kujawska, M.; Mitra, S.; Fardus-Reid, F.; Belteki, G.; Lloyd, K.; Swann, J.; Kroll, S.; Clarke, P.; Hall, L. J.

10.1101/698092 — microbiology — Posted on 2019-10-04

3450 Genome-Wide Classification of Type I, Type II and Type III Interferon-Stimulated Genes in Chicken Fibroblasts

Munir, M.; Santhakumar, D.; Rohaim, M. A.

10.1101/793448 — immunology — Posted on 2019-10-04

3451 Motorized shoes induce robust sensorimotor adaptation in walking

Aucie, Y.; Zhang, X.; Sargent, R.; Torres-Oviedo, G.

10.1101/788943 — bioengineering — Posted on 2019-10-04

3452 Mechanisms of chromosome biorientation and bipolar spindle assembly analyzed by computational modeling

Edelmaier, C. J.; Lamson, A. R.; Gergely, Z. R.; Ansari, S.; Blackwell, R.; McIntosh, J. R.; Glaser, M. A.; Betterton, M. D.

10.1101/649913 — cell biology — Posted on 2019-10-04

3453 A framework for gene mapping in wheat demonstrated using the Yr7 yellow rust resistance gene

O'Sullivan, D. M.; Gardiner, L.-J.; Bansept-Basler, P.; El-Soda, M.; Hall, A.

10.1101/793604 — genetics — Posted on 2019-10-04

3454 Dual-stage 3D network super-resolution for volumetric fluorescence microscopy far beyond throughput limit

Zhang, H.; Fang, C.; Zhao, Y.; Li, G.; Li, Y.; Zhang, M.; Li, Y.; Wan, P.; Yu, T.; Zhang, Y.; Zhu, D.; Gao, S.; Fei, P.

10.1101/435040 — biophysics — Posted on 2019-10-04

3455 A Suboptimal Model Explained the Spatiotemporal Control of Human Eye Movements in Visual Search

Zhou, Y.; Yu, Y.

10.1101/779652 — neuroscience — Posted on 2019-10-04

3456 The Insulin Receptor In Astrocytes Is Involved In The Entrance Of Circulating Insulin Into The Brain

Fernandez, A. M.; Davila, J. C.; Garcia-Caceres, C.; Navarrete Llinas, M.; Palenzuela, R.; Ruiz de Martin, S.; Mostany, R.; Tschop, M.; Gutierrez, M. A.; Torres Aleman, I.

10.1101/720813 — neuroscience — Posted on 2019-10-04

3457 Adenine DNA methylation, 3D genome organization and gene expression in the parasite Trichomonas vaginalis

Lizarraga, A.; Klapholz OBrown, Z.; Roach, L.; Lieberman Greer, E.; Johnson, P. J.; Strobl-Mazzulla, P. H.; de Miguel, N.

10.1101/603894 — microbiology — Posted on 2019-10-04

3458 Inhibitory mechanisms involved in the retroactive orienting of attention within visual working memory: A neural oscillations perspective

Roesner, M.; Arnau, S.; Skiba, I.; Wascher, E.; Schneider, D.

10.1101/681031 — neuroscience — Posted on 2019-10-04

3459 Global Genetic Cartography of Urban Metagenomes andAnti-Microbial Resistance

10.1101/724526 — microbiology — Posted on 2019-10-04

3460 The C. elegans 3’-UTRome V2: an updated genomic resource to study 3’-UTR biology

Steber, H.; Gallante, C.; O'Brien, S.; Chiu, P.-L.; Mangone, M.

10.1101/704098 — genomics — Posted on 2019-10-04

3461 Rapid evolution at the telomere: transposable element dynamics at an intrinsically unstable locus

McGurk, M. P.; Dion-Cote, A.-M.; Barbash, D. A.

10.1101/782904 — genetics — Posted on 2019-10-04

3462 Impact of modular mitochondrial epistatic interactions on the evolution of human subpopulations

Shinde, P.; Whitwell, H. J.; Verma, R. K.; Ivanchenko, M.; Zaikin, A.; Jalan, S.

10.1101/505818 — systems biology — Posted on 2019-10-04

3463 Rigbox: An Open-source Toolbox for Probing Neurons and Behavior

Bhagat, J.; Wells, M. J.; Peters, A. J.; Harris, K. D.; Carandini, M.; Burgess, C. P.

10.1101/672204 — neuroscience — Posted on 2019-10-04

3464 Recalibrating the Genome-wide Association Null Hypothesis Enables the Detection of Core Genes Underlying Complex Traits

Cheng, W.; Ramachandran, S.; Crawford, L.

10.1101/597484 — genetics — Posted on 2019-10-04

3465 Carbon monoxide, a retrograde messenger generated in post-synaptic mushroom body neurons evokes non-canonical dopamine release

Ueno, K.; Morstein, J.; Ofusa, K.; Naganos, S.; Suzuki-Sawano, E.; Minegishi, A.; Rezgui, S. P.; Michel, B. W.; Kitagishi, H.; Chang, C.; Horiuchi, J.; Saitoe, M.

10.1101/382127 — neuroscience — Posted on 2019-10-04

3466 Evaluation of IL-1 blockade as a host-directed therapy for tuberculosis in mice and macaques

Winchell, C. G. M.; Mishra, B. B.; Phuah, J. Y.; Saqib, M.; Nelson, S. J.; Maiello, P.; Causgrove, C. M.; Ameel, C. L.; Stein, B.; Borish, H. J.; White, A. G.; Klein, E. C.; Zimmerman, M. D.; Dartois, V.; Lin, P. L.; Sassetti, C. M.; Flynn, J. L.

10.1101/792390 — microbiology — Posted on 2019-10-03

3467 Predicting Alzheimer’s disease progression trajectory and clinical subtypes using machine learning

Satone, V. K.; Kaur, R.; Leonard, H.; Iwaki, H.; Sargent, L.; Scholz, S. W.; Nalls, M. A.; Singleton, A. B.; Faghri, F.; Campbell, R. H.; Alzheimers Disease Neuroimaging Initiative,

10.1101/792432 — neuroscience — Posted on 2019-10-03

3468 Evaluation of bacterial proliferation with a microfluidic-based device: Antibiochip.

Pizzi, M.; Gallo, V.; Ruiba, A.; Zanin, M.; Begnamino, P.; Ledda, S.; Pesce, T.; Melioli, G.

10.1101/792358 — microbiology — Posted on 2019-10-03

3469 Grass Carp Reovirus (GCRV) Giving Its All to Suppress IFN Production by Countering MAVS-TBK1 Activation .

Lu, L.-F.; Li, Z.-C.; Zhang, C.; Zhou, X.-y.; Zhou, Y.; Jiang, J.-Y.; Chen, D.-d.; Li, S.; Zhang, Y.-A.

10.1101/792408 — immunology — Posted on 2019-10-03

3470 Repository-based plasmid design

Timmons, J. J.; Densmore, D.

10.1101/792341 — bioinformatics — Posted on 2019-10-03

3471 Maximizing the Reusability of Gene Expression Data by Predicting Missing Metadata

Lung, P.-Y.; Pang, X.; Li, Y.; Zhang, J.

10.1101/792382 — bioinformatics — Posted on 2019-10-03

3472 Plasminogen repairs abnormal pain perception through improving sensory function recovery and regeneration of peripheral small nerve fiber in db/db mice

yuanyuan, W.

10.1101/792325 — biochemistry — Posted on 2019-10-03

3473 Pupil diameter differentiates expertise in dental radiography visual search

Castner, N.; Appel, T.; Eder, T.; Ricther, J.; Scheiter, K.; Keutel, C.; Hüttig, F.; Duchowski, A.; Kasneci, E.

10.1101/792374 — scientific communication and education — Posted on 2019-10-03

3474 Elevated CO2 and warming change the nutrient status and use efficiency of Panicum maximum Jacq.

Carvalho, J. M.; Prado, R. d. M.; Barreto, R. F.; Habermann, E.; Branco, R. B. F.; Martinez, C. A.

10.1101/792440 — plant biology — Posted on 2019-10-03

3475 An evaluation model for aboveground biomass Based on Hyperspectral Data from field and TM8 in Khorchin grassland, China

xiaohua, z.; Tian, M.; Chen, X.; Fan, Y.; Ma, J.; Xing, D.

10.1101/792424 — ecology — Posted on 2019-10-03

3476 Field decomposition of Bt-506 corn leaf and its effect on Collembola in the black soil region of China

Wang, B.; Wu, F.; Yin, J.; Zhang, L.; Song, X.

10.1101/792309 — ecology — Posted on 2019-10-03

3477 Late ERP amplitude for self-face perception positively associated with heartbeat perception accuracy

Tumialis, A. V.; Alikovskaia, T. A.; Smirnov, A. S.; Fadeev, K. A.; Gutnikov, S. A.; Golokhvast, K. S.

10.1101/792366 — neuroscience — Posted on 2019-10-03

3478 Contribution of unfixed transposable element insertions to human regulatory variation

Goubert, C.; Arce Zevallos, N.; Feschotte, C.

10.1101/792937 — genomics — Posted on 2019-10-03

3479 Genomic epidemiology of a complex, multi-species plasmid-borne blaKPC carbapenemase outbreak in Enterobacterales in the UK, 2009-2014

Stoesser, N.; Phan, H. T.; Seale, A. C.; Aiken, Z.; Thomas, S.; Smith, M.; Wyllie, D.; George, R.; Sebra, R.; Mathers, A. J.; Vaughan, A.; Peto, T. E.; Ellington, M. J.; Hopkins, K. L.; Crook, D. W.; Orlek, A.; Welfare, W.; Cawthorne, J.; Lenney, C.; Dodgson, A.; Woodford, N.; Walker, A. S.; TRACE Investigators' Group,

10.1101/779538 — genomics — Posted on 2019-10-03

3480 Chemogenetic Inhibition of Infralimbic Prefrontal Cortex GABA-ergic Parvalbuminpositive Interneurons Attenuates Chronic Stress Adaptions in Male Mice

Nawreen, N.; Morano, R.; Mahbod, P.; Cotella, E.; Dalal, K.; Fitzgerald, M.; Martelle, S.; Packard, B.; Moloney, R. D.; Herman, J.

10.1101/792721 — neuroscience — Posted on 2019-10-03

3481 TLR5 participates in the TLR4 receptor complex and biases towards MyD88-dependent signaling in environmental lung injury

Hussain, S.; Johnson, C. C.; Sciurba, J.; Meng, X.; Stober, V. P.; Liu, C.; Cypher-Daly, J.; Bulek, K.; Qian, W.; Solis, A.; Sakamachi, Y.; Trempus, C.; Aloor, J. J.; Gowdy, K.; Foster, W. M.; Hollingsworth, J. W.; Tighe, R. M.; Li, X.; Fessler, M. B.; Garantziotis, S.

10.1101/792705 — immunology — Posted on 2019-10-03

3482 Tissue-Specific Alteration of Metabolic Pathways Influences Glycemic Regulation

Ng, N. H. J.; Willems, S. M.; Gloyn, A. L.; Barroso, I.; Meta-Analyses of Glucose and Insulin-related traits Consortium (MAGIC),

10.1101/790618 — genetics — Posted on 2019-10-03

3483 Non-conservation of folding rates in the thioredoxin family reveals degradation of ancestral unassisted-folding

Gamiz-Arco, G.; Risso, V. A.; Candel, A. M.; Ingles-Prieto, A.; Romero-Romero, M. L.; Gaucher, E. A.; Gavira, J. A.; Ibarra-Molero, B.; Sanchez-Ruiz, J. M.

10.1101/790840 — biophysics — Posted on 2019-10-03

3484 RCy3: Network Biology using Cytoscape from within R

Gustavsen, J. A.; Pai, S.; Isserlin, R.; Demchak, B.; Pico, A. R.

10.1101/793166 — bioinformatics — Posted on 2019-10-03

3485 ASM-Clust: classifying functionally diverse protein families using alignment score matrices

Speth, D. R.; Orphan, V. J.

10.1101/792739 — bioinformatics — Posted on 2019-10-03

3486 Repeated hypoglycemia blunts the responsiveness of glucose-inhibited GHRH neurons by remodeling neural inputs and disrupting mitochondrial structure and function.

Bayne, M.; Alvarsson, A.; Devarakonda, K.; Li, R.; Jimenez-Gonzalez, M.; Conner, K.; Varghese, M.; Serasinghe, M. N.; Chipuk, J. E.; Hof, P. R.; Stanley, S. A.

10.1101/788869 — physiology — Posted on 2019-10-03

3487 PRMT5 in T helper lymphocytes is essential for cholesterol biosynthesis-mediated Th17 responses and autoimmunity

Webb, L. M.; Sengupta, S.; Edell, C.; Amici, S. A.; Narvaez-Miranda, J.; Kennemer, A.; Guerau-de-Arellano, M.

10.1101/792788 — immunology — Posted on 2019-10-03

3488 No genetic evidence for involvement of alcohol dehydrogenase genes in risk for Parkinson’s disease

Kim, J. J.; Bandres Ciga, S.; Blauwendraat, C.; International Parkinson's Disease Genomics Consortium, ; Gan-Or, Z.

10.1101/784405 — genetics — Posted on 2019-10-03

3489 A physics-based energy function allows the computational redesign of a PDZ domain

Opuu, V.; Sun, Y. J.; Hou, T.; Panel, N.; Ichikawa, D. M.; Corbi-Verge, C.; Kim, P. M.; Noyes, M.; Fuentes, E. J.; Simonson, T.

10.1101/790667 — biophysics — Posted on 2019-10-03

3490 Target-responsive vasoactive probes for ultrasensitive molecular imaging

Ohlendorf, R.; Wisniowska, A.; Desai, M.; Barandov, A.; Slusarczyk, A.; Jasanoff, A.

10.1101/786079 — bioengineering — Posted on 2019-10-03

3491 Diverse transcriptomic signatures across human tissues identify functional rare genetic variation

Ferraro, N. M.; Strober, B. J.; Einson, J.; Li, X.; Aguet, F.; Barbeira, A. N.; Castel, S. E.; Davis, J. R.; Hilliard, A. T.; Kotis, B.; Park, Y.; Scott, A. J.; Smail, C.; Tsang, E. K.; Ardlie, K. G.; Assimes, T. L.; Hall, I.; Im, H. K.; GTEx Consortium, ; Lappalainen, T.; Mohammadi, P.; Montgomery, S. B.; Battle, A.

10.1101/786053 — genomics — Posted on 2019-10-03

3492 Lupus auto-antibodies act as positive allosteric modulators at NMDA receptors and induce spatial memory deficits

Chan, K.; Nestor, J.; Huerta, T. S.; Certain, N.; Moody, G.; Kowal, C.; Huerta, P. T.; Volpe, B. T.; Diamond, B.; Wollmuth, L. P.

10.1101/791715 — neuroscience — Posted on 2019-10-03

3493 Cortico-cortical feedback from V2 exerts a powerful influence over the visually evoked local field potential and associated spike timing in V1

Hartmann, T. S.; Raja, S.; Lomber, S. G.; Born, R. T.

10.1101/792010 — neuroscience — Posted on 2019-10-03

3494 A Petascale Automated Imaging Pipeline for Mapping Neuronal Circuits with High-throughput Transmission Electron Microscopy

Yin, W.; Brittain, D.; Borseth, J.; Scott, M. E.; Williams, D.; Perkins, J.; Own, C. S.; Murfitt, M. F.; Torres, R. M.; Kapner, D.; Bleckert, A.; Castelli, D.; Reid, D.; Lee, W.-C. A.; Graham, B. J.; Takeno, M.; Bumbarger, D.; Farrel, C.; Reid, C. R.; Macarico da Costa, N.

10.1101/791889 — neuroscience — Posted on 2019-10-03

3495 A sorghum Practical Haplotype Graph facilitates genome-wide imputation and cost-effective genomic prediction

10.1101/775221 — genomics — Posted on 2019-10-03

3496 The metalloproteinase Papp-aa functions as a molecular switch linking IGF signaling to adaptive epithelial growth

Liu, C.; Li, S.; Noer, P. R.; Kjaer-Sorensen, K.; Ke, C.; Oxvig, C.; Duan, C.

10.1101/792978 — developmental biology — Posted on 2019-10-03

3497 RESTORE: Robust intEnSiTy nORmalization mEthod for Multiplexed Imaging

Chang, Y. H.; Chin, K.; Thibault, G.; Eng, J.; Grace, L.; Gray, J. W.

10.1101/792770 — systems biology — Posted on 2019-10-03

3498 An Emergent Neural Coactivity Code for Dynamic Memory

El-Gaby, M.; Reeve, H. M.; Lopes-dos-Santos, V.; Campo-Urriza, N.; Perestenko, P. V.; Lukacs, I.; Paulsen, O.; Dupret, D.

10.1101/776195 — neuroscience — Posted on 2019-10-03

3499 Template switching by a group II intron reverse transcriptase: biochemical analysis and implications for RNA-seq

Lentzsch, A. M.; Yao, J.; Russell, R.; Lambowitz, A. M.

10.1101/792986 — molecular biology — Posted on 2019-10-03

3500 RNA-sequencing analysis of a multistep and hit-and-run cell and animal model of KSHV tumorigenesis reveal the roles of mutations, CpG methylation, and viral-infection footprints in oncogenesis.

naipauer, j.; Rosario, S.; Salyakina, D.; Journo, G.; Williams, S.; Abba, M.; Shamay, M.; Mesri, E. A.

10.1101/792028 — cancer biology — Posted on 2019-10-03

3501 Division of labor promotes the spread of information in colony emigrations by the ant Temnothorax rugatulus

Valentini, G.; Masuda, N.; Shaffer, Z.; Hanson, J. R.; Sasaki, T.; Walker, S. I.; Pavlic, T. P.; Pratt, S. C.

10.1101/791996 — animal behavior and cognition — Posted on 2019-10-03

3502 Hypothalamic C2-domain protein involved in MC4R trafficking and control of energy balance

Gavini, C. K.; Cook, T. M.; Rademacher, D. J.; Mansuy-Aubert, V.

10.1101/793000 — physiology — Posted on 2019-10-03

3503 Automated analysis of sleep in adult C. elegans with closed-loop assessment of state-dependent neural activity

Lawler, D. E.; Chew, Y. L.; Hawk, J. D.; Aljobeh, A.; Schafer, W.; Albrecht, D. R.

10.1101/791764 — neuroscience — Posted on 2019-10-03

3504 Enhanced insular connectivity with speech sensorimotor regions in trained singers: a resting-state fMRI study

Zamorano, A.; Zatorre, R.; Vuust, P.; Friberg, A.; Birbaumer, N.; Kleber, B.

10.1101/793083 — neuroscience — Posted on 2019-10-03

3505 Polygenic adaptation after a sudden change in environment

Hayward, L. K.; Sella, G.

10.1101/792952 — evolutionary biology — Posted on 2019-10-03

3506 Structure of the Vesicular Stomatitis Virus L Protein in Complex with Its Phosphoprotein Cofactor

Jenni, S.; Bloyet, L.-M.; Diaz-Avalos, R.; Liang, B.; Whelan, S. P. J.; Grigorieff, N.; Harrison, S. C.

10.1101/792960 — molecular biology — Posted on 2019-10-03

3507 GIGYF2 and 4EHP Inhibit Translation Initiation of Defective Messenger RNAs to Assist Ribosome-Associated Quality Control

Hickey, K. L.; Dickson, K.; Cogan, J. Z.; Replogle, J. M.; Schoof, M.; D'Orazio, K. N.; Sinha, N. K.; Frost, A.; Green, R.; Kostova, K. K.; Weissman, J. S.

10.1101/792994 — genetics — Posted on 2019-10-03

3508 Transgene-mediated skeletal phenotypic variation in zebrafish

Kimmel, C. B.; Wind, A.; Oliva, W.; Ahlquist, S. D.; Walker, C.; Dowd, J.; Blanco-Sanchez, B.; Titus, T.; Batzel, P.; Postlethwait, J. H.; Nichols, J. T.

10.1101/792929 — developmental biology — Posted on 2019-10-03

3509 Podoplanin function is switched by partner proteins on fibroblastic reticular cells

de Winde, C. M.; Makris, S.; Millward, L.; Benjamin, A. C.; Cazzagon, G.; Martinez, V. G.; Acton, S. E.

10.1101/793141 — cell biology — Posted on 2019-10-03

3510 Strain-Dependent Kinetic Properties of KIF3A and KIF3C Tune the Mechanochemistry of the KIF3AC Heterodimer

Bensel, B. M.; Woody, M. S.; Pyrpassopoulos, S.; Goldman, Y. E.; Gilbert, S. P.; Ostap, E. M.

10.1101/793075 — biophysics — Posted on 2019-10-03

3511 Functional single-cell genomics of human cytomegalovirus infection

Hein, M. Y.; Weissman, J. S.

10.1101/775080 — systems biology — Posted on 2019-10-03

3512 Big-data analysis unearths the general regulatory regime in normal human genome and cancer

WANG, A.; Hai, R.

10.1101/791970 — genomics — Posted on 2019-10-03

3513 Hunting strategies and the lateral line of Astyanax mexicanus larva

Yoffee, M.; Patel, K.; Palia, E.; Kolawole, S.; Streets, A.; Haspel, G.; Soares, D.

10.1101/791418 — evolutionary biology — Posted on 2019-10-03

3514 Pollinators in food webs: Mutualistic interactions increase diversity, stability, and function in multiplex networks

Hale, K. R. S.; Valdovinos, F. S.; Martinez, N. D.

10.1101/791707 — ecology — Posted on 2019-10-03

3515 Low E2F2 activity is associated with high genomic instability and PARPi resistance

Rennhack, J.; Andrechek, E. R.

10.1101/777870 — cancer biology — Posted on 2019-10-03

3516 Daughterless, the Drosophila orthologue of TCF4, is required for associative learning and maintenance of synaptic proteome

Tamberg, L.; Jaago, M.; Säälik, K.-L.; Shubina, A.; Kiir, C. S.; Sirp, A.; Timmusk, T.; Palgi, M.

10.1101/792796 — neuroscience — Posted on 2019-10-03

3517 Distributed and Retinotopically Asymmetric Processingn of Coherent Motion in Mouse Visual Cortex

Sit, K. K.; Goard, M. J.

10.1101/791905 — neuroscience — Posted on 2019-10-03

3518 Choosing Your Battles: Which Resistance Genes Warrant Global Action?

Zhang, A.-N.; Li, L.; Yin, X.; Dai, C. L.; Groussin, M.; Poyet, M.; Topp, E.; Gillings, M. R.; Hanage, W. P.; Tiedje, J. M.; Alm, E. J.; Zhang, T.

10.1101/784322 — microbiology — Posted on 2019-10-03

3519 Influence of body weight at young adulthood on the epigenetic clock and lifespan in the BXD murine family

Sandoval-Sierra, J. V.; Helbing, A. H.; Williams, E. G.; Ashbrook, D. G.; Roy, S.; Williams, R. W.; Mozhui, K.

10.1101/791582 — genomics — Posted on 2019-10-03

3520 When the going gets tough, the tough get going: effect of extreme climate on an Antarctic seabird’s life history

Jenouvrier, S.; Aubry, L.; van Daalen, S.; Barbraud, C.; Weimerskirch, H.; Caswell, H.

10.1101/791855 — ecology — Posted on 2019-10-03

3521 Multiplex in situ hybridization within a single transcript: RNAscope reveals dystrophin mRNA dynamics

Hildyard, J. C. W.; Rawson, F.; Wells, D. J.; Piercy, R. J.

10.1101/791780 — cell biology — Posted on 2019-10-03

3522 Orthogonal proteomic platforms and their implications for the stable classification of high-grade serous ovarian cancer subtypes

Thomas, S. N.; Friedrich, B.; Schnaubelt, M.; Chan, D. W.; Zhang, H.; Aebersold, R.

10.1101/793026 — cancer biology — Posted on 2019-10-03

3523 A role of hypoxia inducible factor 1 alpha in Mouse Gammaherpesvirus 68 (MHV68) lytic replication and reactivation from latency

Lopez-Rodriguez, D. M.; Kirillov, V.; Krug, L.; Mesri, E. A.; Andreansky, S.

10.1101/791616 — cancer biology — Posted on 2019-10-03

3524 Historical recombination variability contributes to deciphering the genetic basis of phenotypic traits

Ruiz-Arenas, C.; Caceres, A.; Lopez-Sanchez, M.; Pelegri-Siso, D.; Gonzalez, J.; Gonzalez, J. R.

10.1101/792747 — bioinformatics — Posted on 2019-10-03

3525 A phage display approach to identify highly selective covalent binders

Chen, S.; Bogyo, M.

10.1101/791533 — bioengineering — Posted on 2019-10-03

3526 3D-Cardiomics: A spatial transcriptional atlas of the mammalian heart

Mohenska, M.; Tan, N. M.; Tokolyi, A.; Furtado, M.; Costa, M.; Perry, A.; Hatwell-Humble, J.; van Duijvenboden, K.; Nim, H.; Nilsson, S.; Powell, D.; Rosenthal, N.; Rossello, F.; Ramialison, M.; Polo, J. M.

10.1101/792002 — systems biology — Posted on 2019-10-03

3527 Widespread dysregulation of long non-coding genes associated with fatty acid metabolism, cell division, and immune response gene networks in xenobiotic-exposed rat liver

Karri, K.; Waxman, D. J.

10.1101/791772 — pharmacology and toxicology — Posted on 2019-10-03

3528 Circular RNA ZNF827 tunes neuronal differentiation by facilitating transcriptional repression of Neuronal Growth Factor Receptor

Hollensen, A. K.; Llinares, M. L.; Thomsen, H. S.; Kamstrup, A. B.; Luckmann, M.; Birkmose, N.; Jensen, J. M.; Jensen, T. H.; Hansen, T. B.; Damgaard, C. K.

10.1101/791798 — molecular biology — Posted on 2019-10-03

3529 A vast resource of allelic expression data spanning human tissues

Castel, S. E.; Aguet, F.; Mohammadi, P.; GTEx Consortium, ; Ardlie, K.; Lappalainen, T.

10.1101/792911 — genomics — Posted on 2019-10-03

3530 Alcohol induces mitochondrial fragmentation and stress responses to maintain normal muscle function in Caenorhabditis elegans

Oh, K. H.; Kim, H.

10.1101/791814 — genetics — Posted on 2019-10-03

3531 Geographic variation in hemocyte diversity and phagocytic propensity shows a diffuse genomic signature in the green veined white butterfly

Keehnen, N. L. P.; Fors, L.; Jarver, P.; Spetz, A.-L.; Nylin, S.; Theopold, U.; Wheat, C. W.

10.1101/790782 — evolutionary biology — Posted on 2019-10-03

3532 Determinism and stochasticity in seed dispersal-successional feedbacks

Huanca Nunez, N.; Chazdon, R. L.; Russo, S. E.

10.1101/791988 — ecology — Posted on 2019-10-03

3533 Regional dynamics of fractal dimension of the LV endocardium from cine CT images

Manohar, A.; Rossini, L.; Colvert, G.; Vigneault, D. M.; Contijoch, F.; Chen, M. Y.; del Alamo, J. C.; McVeigh, E. R.

10.1101/791731 — bioengineering — Posted on 2019-10-03

3534 Transmembrane helix 6b links proton- and metal-release pathways to drive conformational change in an Nramp transition metal transporter

Bozzi, A. T.; McCabe, A. L.; Barnett, B. C.; Gaudet, R.

10.1101/792127 — biochemistry — Posted on 2019-10-03

3535 N-Acetyl Cysteine Abrogates Silver-Induced Reactive Oxygen Species in Human Cells Without Altering Silver-Based Antimicrobial Activity

Shah, K. N.; Shah, P. N.; Mullen, A. R.; Chen, Q.; DeBerardinis, R.; Cannon, C. L.

10.1101/792150 — pharmacology and toxicology — Posted on 2019-10-03

3536 A neuronal signature for monogamous reunion

Scribner, J. L.; Vance, E.; Protter, D. S. W.; Sheeran, W. M.; Saslow, E.; Cameron, R.; Klein, E.; Jimenez, J. C.; Kheirbek, M. A.; Donaldson, Z.

10.1101/675959 — neuroscience — Posted on 2019-10-03

3537 White matter hyperintensities and neuropsychiatric symptoms in Alzheimer’s disease and mild cognitive impairment

Misquitta, K.; Dadar, M.; Collins, D. L.; Tartaglia, M. C.

10.1101/791657 — neuroscience — Posted on 2019-10-03

3538 Microglial depletion with CSF1R inhibitor during chronic phase of experimental traumatic brain injury reduces neurodegeneration and neurological deficits

Henry, R. J.; Ritzel, R. M.; Barrett, J. P.; Doran, S. J.; Jiao, Y.; Leach, J.; Szeto, G.; Stoica, B. A.; Faden, A. I.; Loane, D. J.

10.1101/791871 — neuroscience — Posted on 2019-10-03

3539 Brain Differences in the Prefrontal Cortex, Amygdala, and Hippocampus in Youth with Congenital Adrenal Hyperplasia

Herting, M. M.; Azad, A.; Kim, R.; Geffner, M. E.; Kim, M. S.

10.1101/791541 — neuroscience — Posted on 2019-10-03

3540 Sensitive detection of protein ubiquitylation using a protein-fragment complementation assay

Le Boulch, M.; Brossard, A.; Le Dez, G.; Rabut, G.

10.1101/791897 — molecular biology — Posted on 2019-10-03

3541 A quantitative narrative on movement, disease and patch exploitation in nesting agent groups

Getz, W. M.; Salter, R.; Tallam, K.

10.1101/791400 — ecology — Posted on 2019-10-03

3542 CircFOXK2 Promotes Tumor Growth and Metastasis of Pancreatic Ductal Adenocarcinoma via Complexing with RNA Binding Proteins and Sponging MiR-942

Wong, C. H.; Lou, U. K.; Li, Y.; Chan, S. L.; Tong, J. H.-M.; To, K.-F.; Chen, Y.

10.1101/792101 — cancer biology — Posted on 2019-10-03

3543 Temporal contiguity training does not affect size-tolerant representations in object-selective cortex

Van Meel, C.; Op de Beeck, H.

10.1101/791392 — neuroscience — Posted on 2019-10-03

3544 A molecular logic of sensory coding revealed by optical tagging of physiologically-defined neuronal types

Lee, D.; Kume, M.; Holy, T. E.

10.1101/692079 — neuroscience — Posted on 2019-10-03

3545 Double asymmetric percolation drives a quadruple transition in sexual contact networks

Zheng, H.; Zeng, X.

10.1101/784587 — bioinformatics — Posted on 2019-10-03

3546 Simultaneous Targeting of XPO1 and BCL2 as an Effective Treatment Strategy for Double-Hit Lymphoma

Liu, Y.; Azizian, N.; Dou, Y.; Pham, L.; Li, Y.

10.1101/688093 — cancer biology — Posted on 2019-10-03

3547 A small membrane protein critical to both the offensive and defensive capabilities of Staphylococcus aureus.

Massey, R. C.; Duggan, S.; Laabei, M.; Alnahari, A.; O'Brien, E.; Lacey, K.; Bacon, L.; Heesom, K.; Fu, C.-L.; Otto, M.; Skaar, E.; McLoughlin, R.

10.1101/712737 — microbiology — Posted on 2019-10-03

3548 A mutation in Hnrnph1 that decreases methamphetamine-induced reinforcement, reward, and dopamine release and increases synaptosomal hnRNP H and mitochondrial proteins

Ruan, Q. T.; Yazdani, N.; Blum, B. C.; Beierle, J. A.; Lin, W.; Coelho, M. A.; Fultz, E. K.; Healy, A. F.; Shahin, J. R.; Kandola, A. K.; Luttik, K. P.; Zheng, K.; Smith, N. J.; Cheung, J.; Mortazavi, F.; Apicco, D. J.; Varman, D. R.; Ramamoorthy, S.; Ash, P. E. A.; Rosene, D.; Emili, A.; Wolozin, B.; Szumlinski, K. K.; Bryant, C. D.

10.1101/717728 — neuroscience — Posted on 2019-10-03

3549 The Brazilian Amazon Protected Area Network was largely unaffected by recent fires

Bebber, D. P.

10.1101/784975 — ecology — Posted on 2019-10-03

3550 No statistical evidence for an effect of CCR5-Δ32 on lifespan in the UK Biobank cohort

Maier, R. M.; Akbari, A.; Wei, X.; Patterson, N.; Nielsen, R. J.; Reich, D. E.

10.1101/787986 — genetics — Posted on 2019-10-03

3551 Structures of the ATP-fueled ClpXP proteolytic machine bound to protein substrate

Fei, X.; Bell, T. A.; Jenni, S.; Stinson, B. M.; Baker, T. A.; Harrison, S. C.; Sauer, R. T.

10.1101/704999 — biophysics — Posted on 2019-10-03

3552 Early hippocampal hyperexcitability followed by disinhibition in a mouse model of Dravet syndrome

Almog, Y.; Brusel, M.; Anderson, K.; Rubinstein, M.

10.1101/790170 — neuroscience — Posted on 2019-10-03

3553 LAMBDR: Long-range amplification and Nanopore sequencing of Mycobacterium bovis direct-repeat region. A novel method for in-silico spoligotyping of M. bovis directly from badger faeces.

James, R. S.; Travis, E. R.; Millard, A. D.; Hewlett, P. C.; Kravar-Garde, L.; Wellington, E.

10.1101/791129 — molecular biology — Posted on 2019-10-03

3554 ITC and SPR Analysis Using Dynamic Approach

Krishanmoorthy, G. K.; Alluvada, P.; Hameed MS, S.; Kwa, T.; Krishnamoorthy, J.

10.1101/788075 — biophysics — Posted on 2019-10-03

3555 Genome-wide analysis of transcriptional bursting-induced noise in mammalian cells

Ochiai, H.; Hayashi, T.; Umeda, M.; Yoshimura, M.; Harada, A.; Shimizu, Y.; Nakano, K.; Saitoh, N.; Kimura, H.; Liu, Z.; Yamamoto, T.; Okamura, T.; Ohkawa, Y.; Nikaido, I.

10.1101/736207 — systems biology — Posted on 2019-10-03

3556 Tradeoff between more cells and higher read depth for single-cell RNA-seq spatial ordering analysis of the liver lobule

Seirup, M.; Chu, L.-F.; Sengupta, S.; Leng, N.; Shafer, C. M.; Duffin, B.; Elwell, A. L.; Bolin, J. M.; Swanson, S.; Stewart, R.; Kendziorski, C.; Thomson, J. A.; Bacher, R.

10.1101/764191 — genomics — Posted on 2019-10-03

3557 bioPROTACs as versatile modulators of intracellular therapeutic targets: Application to proliferating cell nuclear antigen (PCNA)

Lim, S.; Khoo, R.; Peh, K. M.; Teo, J.; Chang, S. C.; Ng, S.; Beilhartz, G. L.; Melnyk, R. A.; Johannes, C. W.; Brown, C. J.; Lane, D. P.; Henry, B.; Partridge, A. W.

10.1101/728071 — cell biology — Posted on 2019-10-03

3558 Interplay between historical and current features of the cityscape in shaping the genetic structure of the house mouse (Mus musculus domesticus) in Dakar (Senegal, West Africa)

Stragier, C.; Piry, S.; Loiseau, A.; Kane, M.; Sow, A.; Niang, Y.; Diallo, M.; Ndiaye, A.; Gauthier, P.; Borderon, M.; Granjon, L.; Brouat, C.; Berthier, K.

10.1101/557066 — ecology — Posted on 2019-10-03

3559 Deciphering the combinatorial interaction landscape

Cappuccio, A.; Jensen, S. T.; Hartmann, B.; Sealfon, S. C.; Soumelis, V.; Zaslavsky, E.

10.1101/790543 — bioinformatics — Posted on 2019-10-03

3560 Functionally critical residues in the aminoglycoside resistance-associated methyltransferase RmtC play distinct roles in 30S substrate recognition

Nosrati, M.; Dey, D.; Mehrani, A.; Strassler, S. E.; Zelinskaya, N.; Hoffer, E. D.; Stagg, S. M.; Dunham, C. M.; Conn, G. L.

10.1101/712810 — biochemistry — Posted on 2019-10-03

3561 Simultaneous mRNA and protein quantification at the single-cell level delineates trajectories of CD4+ T-cell differentiation

Trzupek, D.; Dunstan, M.; Cutler, A. J.; Lee, M.; Godfrey, L.; Aschenbrenner, D.; Uhlig, H. H.; Wicker, L.; Todd, J. A.; Ferreira, R. C.

10.1101/706275 — immunology — Posted on 2019-10-03

3562 Tumor fitness, immune exhaustion and clinical outcomes: impact of immune checkpoint inhibitors

Bubie, A.; Kozlova, E. G.; Akers, N.; Villanueva, A.; Losic, B.

10.1101/679886 — cancer biology — Posted on 2019-10-03

3563 A strategy to incorporate prior knowledge into correlation network cutoff selection

Benedetti, E.; Pucic-Bakovic, M.; Keser, T.; Gerstner, N.; Büyüközkan, M.; Stambuk, T.; Selman, M. H. J.; Rudan, I.; Polasek, O.; Hayward, C.; Al-Amin, H.; Suhre, K.; Kastenmüller, G.; Lauc, G.; Krumsiek, J.

10.1101/792697 — bioinformatics — Posted on 2019-10-03

3564 TypeTE: a tool to genotype mobile element insertions from whole genome resequencing data

Goubert, C.; Thomas, J.; Payer, L. M.; Kidd, J. M.; Feusier, J.; Watkins, W. S.; Burns, K. H.; Jorde, L. B.; Feschotte, C.

10.1101/791665 — bioinformatics — Posted on 2019-10-03

3565 A Statistical Pipeline for Identifying Physical Features that Differentiate Classes of 3D Shapes

Wang, B.; Sudijono, T.; Kirveslahti, H.; Gao, T.; Boyer, D. M.; Mukherjee, S.; Crawford, L.

10.1101/701391 — bioinformatics — Posted on 2019-10-03

3566 Simulation of multiple microenvironments shows a putative role of RPTPs on the control of Epithelial-to-Mesenchymal Transition.

Pais, R. J.

10.1101/609263 — systems biology — Posted on 2019-10-03

3567 A new clinical tool to predict outcome in early-stage melanoma patients

Mancuso, F.; Lage, S.; Rasero, J.; Diaz-Ramon, J. L.; Apraiz, A.; Perez-Yarza, G.; Ezkurra, P.; Penas, C.; Sanchez-Diez, A.; Garcia-Vazquez, M. D.; Gardeazabal, J.; Izu, R.; Mujika, K.; Cortes, J.; Asumendi, A.; Boyano, M. D.

10.1101/632455 — pathology — Posted on 2019-10-03

3568 Local reciprocal release of GABA from olfactory bulb granule cell spines: Cooperation of conventional release mechanisms and NMDA receptors

Lage-Rupprecht, V.; Zhou, L.; Bianchini, G.; Aghvami, S. S.; Sassoe-Pognetto, M.; Rozsa, B.; Egger, V.

10.1101/440198 — neuroscience — Posted on 2019-10-03

3569 IDH-Tau-EGFR triad defines the neovascular landscape of diffuse gliomas by controlling mesenchymal differentiation

Gargini, R.; Segura-Collar, B.; Garcia-Escudero, V.; Romero-Bravo, A.; Herranz, B.; Nunez, F. J.; Garcia-Perez, D.; Ayuso-Sacido, A.; Seoane, J.; Sepulveda-Sanchez, J. M.; Hernandez-Lain, A.; Castro, M. G.; Garcia-Escudero, R.; Avila, J.; Sanchez-Gomez, P.; Gutierrez-Guaman, J.; Perez-Nunez, A.

10.1101/541326 — cancer biology — Posted on 2019-10-03

3570 Anesthesia-induced loss of consciousness disrupts auditory responses beyond primary cortex

Krom, A. J.; Marmelshtein, A.; Gelbard-Sagiv, H.; Tankus, A.; Hayat, H.; Hayat, D.; Matot, I.; Strauss, I.; Fahoum, F.; Soehle, M.; Boström, J.; Mormann, F.; Fried, I.; Nir, Y.

10.1101/502385 — neuroscience — Posted on 2019-10-03

3571 Resolving cell cycle speed in one snapshot with a live-cell fluorescent reporter

Eastman, A. E.; Chen, X.; Hu, X.; Hartman, A. A.; Pearlman Morales, A. M.; Yang, C.; Lu, J.; Kueh, H. Y.; Guo, S.

10.1101/494252 — cell biology — Posted on 2019-10-03

3572 Mitochondria biogenesis in the synapse is supported by local translation

Kuzniewska, B.; Cysewski, D.; Wasilewski, M.; Sakowska, P.; Milek, J.; Kulinski, T.; Kozielewicz, P.; Dadlez, M.; Chacinska, A.; Dziembowski, A.; Dziembowska, M.

10.1101/789164 — neuroscience — Posted on 2019-10-03

3573 The GTEx Consortium atlas of genetic regulatory effects across human tissues

Aguet, F.; Barbeira, A. N.; Bonazzola, R.; Brown, A.; Castel, S. E.; Jo, B.; Kasela, S.; Kim-Hellmuth, S.; Liang, Y.; Oliva, M.; Parsana, P. E.; Flynn, E.; Fresard, L.; Gaamzon, E. R.; Hamel, A. R.; He, Y.; Hormozdiari, F.; Mohammadi, P.; Munoz-Aguirre, M.; Park, Y.; Saha, A.; Segrc, A. V.; Strober, B. J.; Wen, X.; Wucher, V.; Das, S.; Garrido-Martin, D.; Gay, N. R.; Handsaker, R. E.; Hoffman, P. J.; Kashin, S.; Kwong, A.; Li, X.; MacArthur, D.; Rouhana, J. M.; Stephens, M.; Todres, E.; Vinuela, A.; Wang, G.; Zou, Y.; The GTEx Consortium, ; Brown, C. D.; Cox, N.; Dermitzakis, E.; Engelhardt,

10.1101/787903 — genetics — Posted on 2019-10-03

3574 CALX-CBD1 Ca2+-binding cooperativity studied by NMR spectroscopy and ITC with Bayesian statistics

Cardoso, M. V. C.; Rivera, J. D.; Vitale, P. M.; Degenhardt, M. F. S.; Abiko, L. A.; Oliveira, C. L. P.; Kopke Salinas, R.

10.1101/791178 — biophysics — Posted on 2019-10-03

3575 CellBender remove-background: a deep generative model for unsupervised removal of background noise from scRNA-seq datasets

Fleming, S. J.; Marioni, J. C.; Babadi, M.

10.1101/791699 — bioinformatics — Posted on 2019-10-03

3576 Style transfer with variational autoencoders is a promising approach to RNA-Seq data harmonization and analysis

Russkikh, N. E.; Antonets, D. V.; Shtokalo, D. N.; Makarov, A. V.; Zakharov, A. M.; Terentev, E. V.

10.1101/791962 — bioinformatics — Posted on 2019-10-03

3577 A Modular Computational Framework for the Rational Design and Exploration of Synthetic Development

Morsut, L.; Lam, C.

10.1101/784496 — synthetic biology — Posted on 2019-10-03

3578 Oncogenic Gata1 causes stage-specific megakaryocyte differentiation delay

Juban, G.; Sakakini, N.; Chagraoui, H.; Cheng, Q.; Soady, K.; Stoilova, B.; Garnett, C.; Waithe, D.; Doondeea, J.; Usukhbayar, B.; Karkoulia, E.; Alexiou, M.; Strouboulis, J.; Morrissey, E.; Roberts, I.; Porcher, C.; Vyas, P.

10.1101/791079 — cell biology — Posted on 2019-10-03

3579 NASH patient liver derived organoids exhibit patient specific NASH phenotypes and drug responses.

McCarron, S.; Bathon, B.; Abbey, D.; Conlon, D. M.; Rader, D. J.; Olthoff, K.; Shaked, A.; Raabe, T. D.

10.1101/791467 — cell biology — Posted on 2019-10-03

3580 Mechanism of manganese dysregulation of dopamine neuronal activity

Lin, M.; Colon-Perez, L. M.; Sambo, D. O.; Miller, D. R.; Lebowitz, J. J.; Jimenez-Rondan, F.; Cousins, R. J.; Horenstein, N.; Aydemir, T. B.; Febo, M.; Khoshbouei, H.

10.1101/792143 — cell biology — Posted on 2019-10-03

3581 MicroRNA miR-7 regulates synthesis and secretion of insulin-like peptides

Agbu, P.; Cassidy, J. J.; Braverman, J.; Jacobson, A.; Carthew, R. W.

10.1101/791640 — physiology — Posted on 2019-10-03

3582 Regulatory Feedbacks on Receptor and Non-receptor Synthesis for Robust Signaling

Lander, A. D.; Nie, Q.; Sanchez-Tapia, C. H.; Simonyan, A.; Wan, F. Y. M.

10.1101/791509 — developmental biology — Posted on 2019-10-03

3583 Neurological disorder drug discovery from gene expression with tensor decomposition

Taguchi, Y.-h.; Turki, T.

10.1101/704163 — bioinformatics — Posted on 2019-10-03

3584 CRISPR-Cas9 generated Pompe knock-in murine model exhibits early-onset hypertrophic cardiomyopathy and skeletal muscle weakness

Huang, J. Y.; Kan, S.-H.; Rangel, A. D.; Chan, Y.; Davis-Turak, J.; Dalton, N. D.; Neumann, J.; Wang, R. Y.

10.1101/780320 — molecular biology — Posted on 2019-10-03

3585 Anthropogenic disturbance drives dispersal syndromes, demography, and gene flow in spatially structured amphibian populations

Cayuela, H.; Besnard, A.; Cote, J.; Laporte, M.; Bonnaire, E.; Pichenot, J.; Schtickzelle, N.; Bellec, A.; Joly, P.; Lena, J.-P.

10.1101/789966 — ecology — Posted on 2019-10-03

3586 Structure of KCNH2 cyclic nucleotide-binding homology domain reveals a functionally vital salt-bridge

Ben-Bassat, A.; Giladi, M.; Haitin, Y.

10.1101/790154 — biophysics — Posted on 2019-10-03

3587 Pharmacological evidence for the implication of noradrenaline in effort

Borderies, N.; Mattioni, J. C. L.; Bornert, P.; Gilardeau, S.; Bouret, S.

10.1101/714923 — neuroscience — Posted on 2019-10-02

3588 Skeletal geometry and niche transitions restore organ size and shape during zebrafish fin regeneration

Stewart, S.; Yette, G. A.; Le Bleu, H. K.; Henner, A. L.; Braunstein, J. A.; Chehab, J. W.; Harms, M. J.; Stankunas, K.

10.1101/606970 — developmental biology — Posted on 2019-10-02

3589 Latent variable modelling and variational inference for scRNA-seq differential expression analysis

Godinho, J.; Carvalho, A.; Vinga, S.

10.1101/719856 — bioinformatics — Posted on 2019-10-02

3590 Auxin export from proximal fruits drives arrest in competent inflorescence meristems

Ware, A.; Walker, C. H.; Simura, J.; Ljung, K.; Bishopp, A.; Wilson, Z. A.; Bennett, T.

10.1101/542662 — plant biology — Posted on 2019-10-02

3591 Adaptive and Innate Immune Cell Responses in Tendons and Lymph Nodes After Tendon Injury and Repair

Noah, A. C.; Li, T. M.; Martinez, L. M.; Wada, S.; Swanson, J. B.; Disser, N. P.; Sugg, K. B.; Rodeo, S. A.; Lu, T. T.; Mendias, C. L.

10.1101/658310 — physiology — Posted on 2019-10-02

3592 Microbes modulate sympathetic neurons via a gut-brain circuit

Muller, P. A.; Schneeberger Pane, M.; Kerner, Z.; Wang, P.; Ilanges, A.; Matheis, F.; Marmol, J. d.; Castro, T. B. R. d.; Perkins, M.; Han, W.; Araujo, I. d.; Mucida, D.

10.1101/545806 — neuroscience — Posted on 2019-10-02

3593 Temporal regulation of nicotinic acetylcholine receptor subunits supports central cholinergic synapse development

Rosenthal, J.; Yin, J.; Long, C.; Spillman, E.; Sheng, C.; Yuan, Q.

10.1101/790659 — neuroscience — Posted on 2019-10-02

3594 Tonic resting-state hubness supports high-frequency activity defined verbal-memory encoding network in epilepsy

Chaitanya, G.; Hinds, W.; Kragel, J.; He, X.; Sideman, N.; Ezzyat, Y.; Sperling, M. R.; Sharan, A.; Tracy, J. I.

10.1101/660696 — neuroscience — Posted on 2019-10-02

3595 Genomics of clinal local adaptation in Pinus sylvestris under continuous environmental and spatial genetic setting

Tyrmi, J. S.; Vuosku, J.; Acosta, J. J.; Li, Z.; Sterck, L.; Cervera, M. T.; Savolainen, O.; Pyhäjärvi, T.

10.1101/647412 — genomics — Posted on 2019-10-02

3596 Generation of Recombinant Rotavirus Expressing NSP3-UnaG Fusion Protein by a Simplified Reverse Genetics System

Philip, A.; Perry, J. L.; Eaton, H.; Shmulevitz, M.; Hyser, J. M.; Patton, J.

10.1101/678292 — microbiology — Posted on 2019-10-02

3597 Selective clearance of the inner nuclear membrane protein emerin by vesicular transport during ER stress

Buchwalter, A.; Schulte, R.; Tsai, H.; Capitanio, J.; Hetzer, M.

10.1101/695643 — cell biology — Posted on 2019-10-02

3598 The dynamics and interactions of respiratory pathogen carriage among French pilgrims during the 2018 Hajj

Hoang, V.-T.; Dao, T.-L.; Ly, T. D. A.; Belhouchat, K.; Chaht, K. L.; Gaudart, J.; Mrenda, B. M.; Drali, T.; Yezli, S.; Alotaibi, B.; Fournier, P.-E.; Raoult, D.; Parola, P.; Pommier de Santi, V.; Gautret, P.

10.1101/791004 — microbiology — Posted on 2019-10-02

3599 FMN-dependent oligomerization of putative lactate oxidase from Pediococcus acidilactici

Ashok, Y.; Maksimainen, M. M.; Kallio, T.; Kilpeläinen, P.; Lehtiö, L.

10.1101/790964 — biochemistry — Posted on 2019-10-02

3600 SPIRONOLACTONE BUT NOT EPLERENONE EXACERBATES CISPLATIN NEPHROTOXICITY

Estrela, G.; Bonnard, B.; Barrera-Chimal, J.; Jaisser, F.

10.1101/790998 — physiology — Posted on 2019-10-02

3601 Modeling Dragons: Using linked mechanistic physiological and microclimate models to explore environmental, physiological, and morphological constraints on the early evolution of dinosaurs

Lovelace, D. M.; Hartman, S. A.; Mathewson, P. D.; Linzmeier, B. J.; Porter, W. P.

10.1101/790980 — paleontology — Posted on 2019-10-02

3602 Brain, music and emotion: An EEG proof-of-concept study on musically continuous, non-personalized emotional responses

Papatzikis, E.; Herbst, A.

10.1101/790972 — neuroscience — Posted on 2019-10-02

3603 Diabetic conditions induce intolerance to accumulation of pathogenic mitochondrial DNAs

Ogasawara, E.; Nakada, K.; Katada, S.; Mito, T.; Hayashi, J.-I.

10.1101/790956 — cell biology — Posted on 2019-10-02

3604 DeltaNeTS+: Elucidating the mechanism of drugs and diseases using gene expression and transcriptional regulatory networks

Noh, H.; Hua, Z.; Chrysinas, P.; Shoemaker, J. E.; Gunawan, R.

10.1101/788968 — bioinformatics — Posted on 2019-10-02

3605 Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD:KRas protein-protein interface

Lowegard, A. U.; Frenkel, M.; Jou, J.; Ojewole, A.; Holt, G.; Donald, B.

10.1101/790949 — biochemistry — Posted on 2019-10-02

3606 When will I get my paper back? A replication study of publication timelines for health professions education research

Maggio, L. A.; Bynum, W. E.; Schreiber-Gregory, D. N.; Durning, S. J.; Artino, A. R.

10.1101/783332 — scientific communication and education — Posted on 2019-10-02

3607 Thickness of deep layers in the fusiform face area predicts face recognition

McGugin, R. W.; Newton, A. T.; Tamber-Rosenau, B.; Tomarken, A.; Gauthier, I.

10.1101/788216 — neuroscience — Posted on 2019-10-02

3608 Metabolic dysregulation of the lysophospholipid/autotaxin axis in the chromosome 9p21 gene SNP rs10757274

Meckelmann, S.; Hawksworth, J.; White, D.; Andrews, R.; Rodrigues, P.; O'Connor, A.; Alvarez Jarreta, J.; Tyrrell, V.; Hinz, C.; Zhou, Y.; Williams, J.; Aldrovandi, M.; Watkins, W. J.; Engler, A.; Slatter, D.; Allen, S.; Acharya, J.; Mitchell, J.; Cooper, J.; Aoki, J.; Kano, K.; Humphries, S.; O'Donnell, V. B.

10.1101/789768 — physiology — Posted on 2019-10-02

3609 Standard housing temperature but not β3-adrenoreceptor agonism drives weight-gain and adipose tissue deposition in rats following diet induced obesity at thermoneutrality

Aldiss, P.; Lewis, J. E.; Lupini, I.; Boocock, D.; Miles, A. K.; Ebling, F. J. P.; Budge, H.; Symonds, M. E.

10.1101/789289 — physiology — Posted on 2019-10-02

3610 Secretin release after Roux-en-Y Gastric Bypass reveals a population of glucose-sensitive S-cells in distal small intestine

Modvig, I. M.; Andersen, D. B.; Grunddal, K. V.; Kuhre, R. E.; Martinussen, C.; Christiansen, C. B.; Oerskov, C.; Larraufie, P.; Kay, R.; Reimann, F.; Gribble, F.; Hartmann, B.; Bojsen-Moeller, K.; Madsbad, S.; Wewer Albrechtsen, N. J.; Holst, J. J.

10.1101/791335 — physiology — Posted on 2019-10-02

3611 Developing a xenograft model of human vasculature in the mouse ear pinna

Meehan, G. R.; Scales, H. E.; Osii, R.; De Niz, M.; Lawton, J. C.; Marti, M.; Garside, P.; Craig, A.; Brewer, J. M.

10.1101/789537 — pathology — Posted on 2019-10-02

3612 Sex and pedagogy influences in learning-related reorganization of brain activity

Bartley, J. E.; Riedel, M. C.; Salo, T.; Bottenhorn, K. L.; Boeving, E. R.; Laird, R. W.; Sutherland, M. T.; Pruden, S. M.; Brewe, E.; Laird, A. R.

10.1101/791301 — neuroscience — Posted on 2019-10-02

3613 Vaporized cannabis extracts have reinforcing properties and support conditioned drug-seeking behavior in rats

Freels, T. G.; Baxter-Potter, L. N.; Lugo, J. M.; Glodosky, N. C.; Wright, H. R.; Baglot, S. L.; Petrie, G. N.; Yu, Z.; Clowers, B. H.; Cuttler, C.; Fuchs, R. A.; Hill, M. N.; McLaughlin, R. J.

10.1101/791319 — neuroscience — Posted on 2019-10-02

3614 COMT Val158Met polymorphism associated with greater susceptibility to framing effects in healthy older adults

Quinn, C. M.; Borzello, M.; Zahir, A.; Kramer, J. H.; Chiong, W.

10.1101/790808 — neuroscience — Posted on 2019-10-02

3615 Ancestral Mitochondrial Protein Secretion Machinery

Horvathova, L.; Zarsky, V.; Panek, T.; Derelle, R.; Pyrih, J.; Motyckova, A.; Klapstova, V.; Klimes, V.; Petru, M.; Vaitova, Z.; Cepicka, I.; Harant, K.; Gray, M. W.; Guilvout, I.; Francetic, O.; Lang, B. F.; Vlcek, C.; Tsaousis, A. D.; Elias, M.; Dolezal, P.

10.1101/790865 — evolutionary biology — Posted on 2019-10-02

3616 aer2vec: Distributed Representations of Adverse Event Reporting System Data as a Means to Identify Drug/Side-Effect Associations

Portanova, J.; Murray, N.; Mower, J.; Subramanian, D.; Cohen, T.

10.1101/780544 — bioinformatics — Posted on 2019-10-02

3617 The persistence in time of distributional patterns in mobile species: its impact for zonal conservation strategies

Lambert, C.; Dorémus, G.; Ridoux, V.

10.1101/790634 — ecology — Posted on 2019-10-02

3618 An RNA-based system to study hepatitis B virus replication and select drug-resistance mutations

Yu, Y.; Schneider, W. M.; Michailidis, E.; Acevedo, A.; Ni, Y.; Ambrose, P.; Zou, C.; Kabbani, M.; Quirk, C.; Jahan, C.; Wu, X.; Urban, S.; Shlomai, A.; de Jong, Y. P.; Rice, C. M.

10.1101/787630 — microbiology — Posted on 2019-10-02

3619 Applying Machine Learning to Investigate Long Term Insect-Plant Interactions Preserved on Digitized Herbarium Specimens

Meineke, E. K.; Tomasi, C.; Yuan, S.; Pryer, K. M.

10.1101/790899 — ecology — Posted on 2019-10-02

3620 Identification of functionally connected multi-omic biomarkers for Alzheimer’s Disease using modularity-constrained Lasso

Xie, L.; Yan, J.

10.1101/789693 — bioinformatics — Posted on 2019-10-02

3621 Heroin Choice Depends on Income Level and Economy Type

Gunawan, T.; Hachiga, Y.; Tripoli, C.; Silberberg, A.; Kearns, D.

10.1101/788703 — animal behavior and cognition — Posted on 2019-10-02

3622 Perinatal exposure to lead results in altered DNA methylation in adult mouse liver and blood: Implications for target versus surrogate tissue use in environmental epigenetics

Svoboda, L. K.; Neier, K. E.; Cavalcante, R. G.; Tsai, Z. T.-Y.; Jones, T. R.; Liu, S.; Goodrich, J. M.; Lalancette, C.; Colacino, J.; Sartor, M.; Dolinoy, D. C.

10.1101/783209 — genomics — Posted on 2019-10-02

3623 Single cell map of the human ovarian cortex.

Wagner, M.; Yoshihara, M.; Douagi, I.; Damdimopoulos, A.; Panula, S.; Petropoulos, S.; Lu, H.; Pettersson, K.; Palm, K.; Katayama, S.; Hovatta, O.; Kere, J.; Lanner, F.; Damdimopoulou, P.

10.1101/791343 — cell biology — Posted on 2019-10-02

3624 ATP-driven separation of liquid phase condensates in bacteria

Guilhas, B.; Walter, J.-C.; Rech, J.; David, G.; Walliser, N.; Palmeri, J.; Mathieu-Demaziere, C.; Parmeggiani, A.; Bouet, J.-Y.; Le Gall, A.; Nollmann, M.

10.1101/791368 — cell biology — Posted on 2019-10-02

3625 Structure of KCNH2 Cyclic Nucleotide-Binding Homology Domain Reveals a Functionally vital Salt-Bridge

Ben-Bassat, A.; Giladi, M.; Haitin, Y.

10.1101/790154 — biophysics — Posted on 2019-10-02

3626 Proteome-scale discovery of protein interactions with residue-level resolution using sequence coevolution

Green, A. G.; Elhabashy, H.; Brock, K. P.; Maddamsetti, R.; Kohlbacher, O.; Marks, D. S.

10.1101/791293 — bioinformatics — Posted on 2019-10-02

3627 Effects of Aging on the Encoding of Spatial Direction in the Human Brain

Koch, C.; Li, S.-C.; Polk, T. A.; Schuck, N. W.

10.1101/791228 — neuroscience — Posted on 2019-10-02

3628 Enhancing autophagy by redox regulation extends lifespan in Drosophila

Cocheme, H. M.; Bjedov, I.; Grönke, S.; Menger, K. E.; James, A. M.; Castillo-Quan, J. I.; Foley, A.; Lennicke, C.; Buricova, M.; Adcott, J.; Cabreiro, F.; Murphy, M. P.; Partridge, L.

10.1101/790378 — molecular biology — Posted on 2019-10-02

3629 Multiple environmental signaling pathways control the differentiation of RORγt-expressing regulatory T cells

Hussein, H.; Denanglaire, S.; Van Gool, F.; Azouz, A.; Ajouaou, Y.; El-Khatib, H.; Oldenhove, G.; Leo, O.; Andris, F.

10.1101/791244 — immunology — Posted on 2019-10-02

3630 Identification of risk variants and characterization of the polygenic architecture of disruptive behavior disorders in the context of ADHD

Demontis, D.; Walters, R. K.; Rajagopal, V. M.; Waldman, I. D.; Grove, J.; Als, T. D.; Dalsgaard, S.; Ribases, M.; Bybjerg-Grauholm, J.; Baekvad-Hansen, M.; Werge, T.; Nordentoft, M.; Mors, O.; Mortensen, P. B.; ADHD Working Group of the Psychiatric Genomics Consortium (PGC), ; Hougaard, D. M.; Neale, B.; Franke, B.; Faraone, S. V.; Borglum, A. D.

10.1101/791160 — genomics — Posted on 2019-10-02

3631 Artificial incubation in species with temperature-dependent sex determination. How hot is too hot?

Lawson, L.; Rollinson, N.

10.1101/791202 — evolutionary biology — Posted on 2019-10-02

3632 GEMtractor: Extracting Views into Genome-scale Metabolic Models

Scharm, M.; Wolkenhauer, O.; Jalili, M.; Salehzadeh-Yazdi, A.

10.1101/790725 — systems biology — Posted on 2019-10-02

3633 Early hippocampal hyperexcitability followed by disinhibition in a mouse model of Dravet syndrome

Almog, Y.; Brusel, M.; Anderson, K.; Rubinstein, M.

10.1101/790170 — neuroscience — Posted on 2019-10-02

3634 Environmental reservoirs of Mycobacterium bovis and Mycobacterium tuberculosis in the Ruaha region, Tanzania

Travis, E. R.; Hung, Y.; Porter, D.; Paul, G.; James, R.; Roug, A.; Kato-Maeda, M.; Kazwala, R.; Smith, W. A.; Hopewell, P.; Courtenay, O.; Wellington, E. M.

10.1101/790824 — microbiology — Posted on 2019-10-02

3635 Functional characterization and lineage analysis of broadly neutralizing human antibodies against dengue virus identified by single B cell transcriptomics

Durham, N. D.; Agrawal, A.; Waltari, E.; Croote, D.; Zanini, F.; Fouch, M.; Davidson, E.; Smith, O.; Carabajal, E.; Pak, J. E.; Doranz, B. J.; Robinson, M.; Sanz, A. M.; Albornoz, L. L.; Rosso, F.; Einav, S.; Quake, S. R.; McCutcheon, K. M.; Goo, L.

10.1101/790642 — microbiology — Posted on 2019-10-02

3636 Immunotherapy of CT26 murine tumors is characterized by an oligoclonal response against the AH1 tumor rejection antigen

Probst, P.; Stringhini, M.; Neri, D.

10.1101/789784 — immunology — Posted on 2019-10-02

3637 BMP signaling regulates Id1 mediated neural stem cell quiescence in the adult zebrafish brain via a phylogenetically conserved enhancer module

Zhang, G.; Ferg, M.; Lubke, L.; Beil, T.; Gourain, V.; Diotel, N.; Strahle, U.; Rastegar, S.

10.1101/787804 — developmental biology — Posted on 2019-10-02

3638 Epigenetic regulation of protein translation in KMT2A-rearranged AML

Lenard, A.; Xie, H. M.; Riedel, S. S.; Yuan, Z.-F.; Zhu, N.; Neff, T.; Bernt, K. M.

10.1101/790287 — cancer biology — Posted on 2019-10-02

3639 Antibody-free enzyme-assisted chemical labeling for detection of transcriptome-wide N6-methyladenosine

Wang, Y.; Xiao, Y.; Dong, S.; Yu, Q.; Jia, G.

10.1101/790683 — biochemistry — Posted on 2019-10-02

3640 The RNA export factor Mex67 functions as a mobile nucleoporin

Derrer, C. P.; Mancini, R.; Vallotton, P.; Huet, S.; Weis, K.; Dultz, E.

10.1101/789818 — cell biology — Posted on 2019-10-02

3641 Cargo-free scaffold implant recruits metastatic cancer cells via lung-mimicking myeloid cell S100A8/A9 axis

Wang, J.; Hall, M. S.; Bushnell, G. G.; Orbach, S. M.; Raghani, R. M.; Zhang, Y.; Decker, J. T.; Morris, A. H.; Kandagatla, P.; Jeruss, J. S.; Shea, L. D.

10.1101/789974 — bioengineering — Posted on 2019-10-02

3642 β-arrestin-dependent ERK signaling positively correlates with reduced anxiety-like and conditioned fear-related behavior in mice

Ko, M. J.; Chiang, T.; Mukadam, A. M.; Mulia, G. E.; Gutridge, A. M.; Chester, j. A.; van Rijn, R. M.

10.1101/790568 — neuroscience — Posted on 2019-10-02

3643 Multistep metabolic engineering of Bacillus licheniformis to improve pulcherriminic acid production

Wang, S.; Wang, H.; Zhang, D.; Li, X.; Zhang, J.; Zhan, Y.; Cai, D.; Ma, X.; Wang, D.; Chen, S.

10.1101/790691 — bioengineering — Posted on 2019-10-02

3644 Spatiotemporal Maps of Proprioceptive Inputs to the Cervical Spinal Cord During Three-Dimensional Reaching and Grasping

Kibleur, P.; Tata, S. R.; Greiner, N.; Conti, S.; Barra, B.; Zhuang, K. Z.; Kaeser, M.; Ijspeert, A.; Capogrosso, M.

10.1101/790816 — bioengineering — Posted on 2019-10-02

3645 Temporal regulation of nicotinic acetylcholine receptor subunits supports central cholinergic synapse development

Yuan, Q.; Rosenthal, J.; Yin, J.; Long, C.; Spillman, E.; Sheng, C.

10.1101/790659 — neuroscience — Posted on 2019-10-02

3646 Pain-free resting-state functional brain connectivity predicts individual pain sensitivity

Spisak, T.; Kincses, B.; Schlitt, F.; Zunhammer, M.; Schmidt-Wilcke, T.; Kincses, Z. T.; Bingel, U.

10.1101/790709 — neuroscience — Posted on 2019-10-02

3647 Population genetic analysis of 12 X-STRs in a Bahraini population sample

Al-Snan, N. R.; Messaoudi, S. A.; Bakhiet, M.; Mansoor, L. A.

10.1101/790915 — genetics — Posted on 2019-10-02

3648 Identifying conservation priorities in a defaunated tropical biodiversity hotspot

Tilker, A.; Abrams, J. F.; Nguyen, A.; Hoerig, L.; Axtner, J.; Louvrier, J.; Rawson, B. M.; Nguyen, H. A. Q.; Guegan, F.; Nguyen, T. V.; Le, M.; Sollmann, R.; Wilting, A.

10.1101/790766 — ecology — Posted on 2019-10-02

3649 High-fidelity continuum modeling predicts voiced sound production

Jiang, W.; Rasmussen, J. H.; Xue, Q.; Ding, M.; Zheng, X.; Elemans, C. P.

10.1101/790857 — zoology — Posted on 2019-10-02

3650 The gift of gab: probing the limits of dynamic concentration-sensing across a network of communicating cells

Bahadorian, M.; Zechner, C.; Modes, C.

10.1101/790907 — systems biology — Posted on 2019-10-02

3651 Mindfulness meditation alters neural activity underpinning working memory during tactile distraction

Wang, M. Y.; Freedman, G.; Raj, K.; Fitzgibbon, B. M.; Sullivan, C.; Tan, W.; Van Dam, N.; Fitzgerald, P. B.; Bailey, N. W.

10.1101/790584 — neuroscience — Posted on 2019-10-02

3652 Integration of eye-centered and landmark-centered codes in frontal eye field gaze responses

Bharmauria, V.; Sajad, A.; Li, J.; Yan, X.; Wang, H.; Crawford, J. D.

10.1101/791236 — neuroscience — Posted on 2019-10-02

3653 Molecular and Behavioral Effects of Infant Maltreatment across Generations in Rhesus Monkeys

Klengel, T.; Morin, E. L.; Howell, B. R.; Bramlett, S.; Guzman, D.; Meyer, J. S.; Ressler, K. J.; Sanchez, M.

10.1101/791152 — neuroscience — Posted on 2019-10-02

3654 Influenza B viruses exhibit lower within-host diversity than influenza A viruses in human hosts

Valesano, A. L.; Fitzsimmons, W. J.; McCrone, J. T.; Petrie, J. G.; Monto, A. S.; Martin, E. T.; Lauring, A. S.

10.1101/791038 — microbiology — Posted on 2019-10-02

3655 Repurposing the Streptococcus mutans CRISPR-Cas9 System to Understand Essential Gene Function

Shields, R. C.; Walker, A. R.; Maricic, N.; Underhill, S. A.; Burne, R. A.

10.1101/791483 — microbiology — Posted on 2019-10-02

3656 Distinct microbial communities in the murine gut are revealed by taxonomy-independent phylogenetic random forests

Singh, G.; Brass, A.; Cruickshank, S. M.; Knight, C.

10.1101/790923 — microbiology — Posted on 2019-10-02

3657 A wave of hematopoietic stem cell-derived T/ILC-restricted progenitors initiates thymopoiesis and shapes the embryonic thymus architecture.

Elsaid, R.; Meunier, S.; Defranoux, O.; Soraes-da-Silva, F.; Perchet, T.; Iturri, L.; Freyer, L.; Vieira, P.; Pereira, P.; Golub, R.; Bandeira, A.; Gomez Perdiguero, E.; Cumano, A.

10.1101/791103 — immunology — Posted on 2019-10-02

3658 Disruption of the coordination between host circadian rhythms and malaria parasite development alters the duration of the intraerythrocytic cycle

Subudhi, A. K.; O'Donnell, A. J.; Ramaprasad, A.; Abkallo, H. M.; Kaushik, A.; Ansari, H. R.; Abdel-Haleem, A. M.; Rached, F. B.; Kaneko, O.; Culleton, R.; Reece, S. E.; Pain, A.

10.1101/791046 — genomics — Posted on 2019-10-02

3659 Stereo In-Line Holographic Digital Microscope

Zimmerman, T.; Antipac, N.; Elnatan, D.; Murru, A.; Biswas, S.; Pastore, V. P.; Bonani, M.; Waller, L.; Fung, J.; Fenu, G.; Bianco, S.

10.1101/790535 — cell biology — Posted on 2019-10-02

3660 Expressing remorin in animal cells forms filamentous structure unraveling the mechanism of plasmodesmata biogenesis

Wei, Z.; Tan, S.; Liu, T.; Wu, Y.; Lei, J.-G.; Xue, H.-W.; Liao, K.

10.1101/791137 — cell biology — Posted on 2019-10-02

3661 Different preference functions act in unison: mate choice and risk-taking behaviour in the Atlantic molly (Poecilia mexicana)

Sommer-Trembo, C.; Schreier, M.; Plath, M.

10.1101/790832 — animal behavior and cognition — Posted on 2019-10-02

3662 Context dependency of biotic interactions and its relation to plant rarity

Kempel, A.; Vincent, H.; Prati, D.; Fischer, M.

10.1101/791269 — ecology — Posted on 2019-10-02

3663 MAGOS: Discovering Subclones in Tumors Sequenced at Standard Depths

Ahmadinejad, N.; Troftgruben, S.; Maley, C.; Wang, J.-W.; Liu, L.

10.1101/790386 — bioinformatics — Posted on 2019-10-02

3664 A roadblock-and-kill model explains the action of the DNA-targeting antibiotic ciprofloxacin

Ojkic, N.; Lilia, E.; Direito, S.; Dawson, A.; Allen, R. J.; Waclaw, B.

10.1101/791145 — systems biology — Posted on 2019-10-02

3665 A novel technology for objective, accurate and non-invasive early diagnosis and monitoring of Alzheimer’s disease in clinics and clinical trials

Vejdani, K.; Liebmann, T.; Pannetier, N.; Khosravi, E.; Yousefnezhad, M.; Krishnamurthy, P.; Farzan, N.; Bahar, C.; Salehi, A.; Esfandyarpour, H.; Kamali-Zare, P.

10.1101/790469 — neuroscience — Posted on 2019-10-02

3666 LAMBDR: Long-range amplification and Nanopore sequencing of Mycobacterium bovis direct-repeat region. A novel method for in-silico spoligotyping of M. bovis directly from badger faeces.

James, R. S.; Travis, E. R.; Hewlett, P. C.; Wellington, E.; Kravar-Garde, L.

10.1101/791129 — molecular biology — Posted on 2019-10-02

3667 Next generation sequencing reveals NRAP as a candidate gene for hypertrophic cardiomyopathy in elderly patients

Sharma, A.; Koranchery, R.; Rajendran, R.; Mohanan, K. S.; Shenthar, J.; Perundurai, D. S.

10.1101/789065 — genomics — Posted on 2019-10-02

3668 Transgenerational dispersal plasticity and its fitness consequences are under genetic control

Cayuela, H.; Jacob, S.; Schtickzelle, N.; Verdonck, R.; Philippe, H.; Laporte, M.; Huet, M.; Bernatchez, L.; Legrand, D.

10.1101/791210 — evolutionary biology — Posted on 2019-10-02

3669 Effects of Substrate Stiffness on Neutrophil Adhesion over L-selectin Coated Endothelial

Claude, C.; Dufour, A.

10.1101/791434 — bioengineering — Posted on 2019-10-02

3670 Genetic Algorithms for model refinement and rule discovery in a high-dimensional agent-based model of inflammation

Cockrell, C.; An, G.

10.1101/790394 — systems biology — Posted on 2019-10-02

3671 G-OnRamp: Generating genome browsers to facilitate undergraduate-driven collaborative genome annotation

Sargent, L.; Liu, Y.; Leung, W.; Mortimer, N. T.; Lopatto, D.; Goecks, J.; Elgin, S. C. R.

10.1101/781658 — scientific communication and education — Posted on 2019-10-02

3672 Optogenetically-Induced Population Discharge Threshold as a Sensitive Measure of Network Excitability

Klorig, D. C.; Alberto, G.; Smith, T.; Godwin, D.

10.1101/641126 — neuroscience — Posted on 2019-10-02

3673 Dominant Vibrio cholerae phage exhibits lysis inhibition sensitive to disruption by a defensive phage satellite

Hays, S. G.; Seed, K.

10.1101/790493 — microbiology — Posted on 2019-10-02

3674 Combining tRNA sequencing methods to characterize plant tRNA expression and post-transcriptional modification

Warren, J. M.; Salinas-Giege, T.; Hummel, G.; Coots, N. L.; Svendsen, J. M.; Brown, K. C.; Marechal-Drouard, L.; Sloan, D. B.

10.1101/790451 — molecular biology — Posted on 2019-10-02

3675 Paradoxical Aortic Stiffening and Subsequent Cardiac Dysfunction in Hutchinson-Gilford Progeria Syndrome

Murtada, S.-I.; Kawamura, Y.; Caulk, A. W.; Ahmadzadeh, H.; Mikush, N.; Zimmerman, K.; Kavanagh, D.; Weiss, D.; Latorre, M.; Zhuang, Z. W.; Shadel, G. S.; Braddock, D. T.; Humphrey, J. D.

10.1101/790477 — bioengineering — Posted on 2019-10-02

3676 Cotranslational Folding Stimulates Programmed Ribosomal Frameshifting in the Alphavirus Structural Polyprotein

Harrington, H. R.; Zimmer, M. H.; Chamness, L. M.; Nash, V.; Penn, W. D.; Miller, T. F.; Mukhopadhyay, S.; Schlebach, J. P.

10.1101/790444 — biochemistry — Posted on 2019-10-02

3677 Label-free characterization of visual cortical areas in awake mice via three-photon microscopy reveals correlations between functional maps and structural substrates

Yildirim, M.; Hu, M.; So, P.; Sur, M.

10.1101/790436 — neuroscience — Posted on 2019-10-02

3678 Homeostatic mechanisms regulate distinct aspects of cortical circuit dynamics

Wu, Y.; Hengen, K. B.; Turrigiano, G. G.; Gjorgjieva, J.

10.1101/790410 — neuroscience — Posted on 2019-10-02

3679 Interplay between Desmoglein2 and hypoxia controls intravasation and circulating tumor cell clustering in breast cancer metastasis

Chang, P.-H.; Chen, M.-C.; Tsai, Y.-P.; Hsu, P.-H.; Jeng, Y.-M.; Hwang-Verslues, W. W.

10.1101/790519 — cancer biology — Posted on 2019-10-02

3680 A cell surface O-glycosylated peptide, AGP21, acts on the brassinosteroid pathway and modulates root hair cell fate

Borassi, C.; Ricardi, M.; Gloazzo Dorosz, J. A.; Pol Fachin, L.; Carignani, M.; Marzol, E.; Mangano, S.; Rodriguez Garcia, D. R.; Martinez Pacheco, J.; Rondon Gurerrero, Y. d. C.; Velasquez, S. M.; Villavicencio, B.; Ciancia, M.; Seifert, G.; Verli, H.; Estevez, J. M.

10.1101/787143 — plant biology — Posted on 2019-10-02

3681 BRICseq bridges brain-wide interregional connectivity to neural activity and gene expression in single animals

Huang, L.; Kebschull, J.; Furth, D.; Musall, S.; Kaufman, M. T.; Churchland, A. K.; Zador, A.

10.1101/422477 — neuroscience — Posted on 2019-10-02

3682 NeuroPycon: A free Python toolbox for fast multi-modal and reproducible brain connectivity pipelines

Meunier, D.; Pascarella, A.; Altukhov, D.; Jas, M.; Combrisson, E.; Lajnef, T.; Bertrand-Dubois, D.; Hadid, V.; Alamian, G.; Alves, J.; Barlaam, F.; Saive, A.-L.; Dehgan, A.; Jerbi, K.

10.1101/789842 — neuroscience — Posted on 2019-10-02

3683 Topological analysis of TMEM180, a newly identified membrane protein that is highly expressed in colorectal cancer cells

Anzai, T.; Matsumura, Y.

10.1101/789750 — biophysics — Posted on 2019-10-02

3684 A tissue-specific collaborative mixed model for jointly analyzing multiple tissues in transcriptome-wide association studies

Shi, X.; Chai, X.; Yang, Y.; Cheng, Q.; Jiao, Y.; Huang, J.; Yang, C.; Liu, J.

10.1101/789396 — bioinformatics — Posted on 2019-10-02

3685 The early life microbiota protects neonatal mice from pathological small intestinal epithelial cell shedding

Hughes, K. R.; Schofield, Z.; Dalby, M. J.; Caim, S.; Chalklen, L.; Bernuzzi, F.; Alcon-Giner, C.; Le Gall, G.; Watson, A. J.; Hall, L. J.

10.1101/789362 — microbiology — Posted on 2019-10-02

3686 Breeding at higher latitude as measured by stable isotope is associated with higher photoperiod threshold and delayed reproductive development in a songbird

Singh, D.; Reed, S. R.; Kimmitt, A. A.; Alford, K. A.; Ketterson, E. D.

10.1101/789008 — ecology — Posted on 2019-10-02

3687 CK2-dependent phosphorylation of the Brg1 chromatin remodeling enzyme occurs during mitosis

Padilla-Benavides, T.; Haokip, D. T.; Yoon, Y.; Reyes-Gutierrez, P.; Rivera-Perez, J. A.; Imbalzano, A. N.

10.1101/781781 — cell biology — Posted on 2019-10-02

3688 Localized delivery and uncaging of glutamate from MRI-visible albumin nanoclusters in the rat hippocampus using focused ultrasound

Rich, M. C.; Sherwood, J.; Bartley, A. F.; Willoughby, W. R.; Dobrunz, L. E.; Lubin, F. D.; Bao, Y.; Bolding, M.

10.1101/696237 — neuroscience — Posted on 2019-10-02

3689 Intergenerational transmission of longevity is not affected by other familial factors: Evidence from 16,905 Dutch families from Zeeland, 1812-1962

Mourits, R. J.; Berg, N. v. d.; Rodriguez-Girondo, M.; Mandemakers, K.; Slagboom, P. E.; Beekman, M.; Janssens, A. A. P. O.

10.1101/781500 — genetics — Posted on 2019-10-02

3690 Sex-specific phenotypic effects and evolutionary history of an ancient deletion polymorphism of the human growth hormone receptor

Resendez, S.; Saitou, M.; Parisi, L.; Wu, F.; Nakagome, S.; Satta, Y.; Atilla-Gokcumen, G. E.; Mu, X.; Gokcumen, O.

10.1101/788653 — evolutionary biology — Posted on 2019-10-02

3691 Geographic Generalization in Airborne RGB Deep Learning Tree Detection

Weinstein, B.; Marconi, S.; Bohlman, S.; Zare, A.; White, E. P.

10.1101/790071 — ecology — Posted on 2019-10-02

3692 Coolpup.py: versatile pile-up analysis of Hi-C data

Flyamer, I. M.; Illingworth, R. S.; Bickmore, W. A.

10.1101/586537 — bioinformatics — Posted on 2019-10-02

3693 Assessing auditory processing endophenotypes associated with Schizophrenia in individuals with 22q11.2 Deletion Syndrome

A Francisco, A.; J Foxe, J.; J Horsthuis, D.; DeMaio, D.; Molholm, S.

10.1101/696021 — neuroscience — Posted on 2019-10-02

3694 DNA sequence differences are determinants of meiotic recombination outcome

Brown, S. D.; Mpaulo, S. J.; Asogwa, M. N.; Jezequel, M.; Whitby, M. C.; Lorenz, A.

10.1101/568543 — genetics — Posted on 2019-10-02

3695 HOX13-dependent chromatin accessibility modulates the target repertoires of the HOX factors

Desanlis, I.; Kherdjemil, Y.; Mayran, A.; Bouklouch, Y.; Gentile, C.; Sheth, R.; Zeller, R.; Drouin, J.; Kmita, M.

10.1101/789875 — developmental biology — Posted on 2019-10-02

3696 PDGFRA Defines the Mesenchymal Stem Cell Kaposi’s Sarcoma Progenitors by Enabling KSHV Oncogenesis in an Angiogenic Environment

Naipauer, J.; Rosario, S.; Gupta, S.; Premer, C.; Mendez, O.; Schlesinger, M.; Ponzinibbio, V.; Jain, V.; Gay, L.; Renne, R.; Chan, H. L.; Morey, L.; Salyakina, D.; Abba, M.; Williams, S.; Hare, J.; Goldschmidt-Clermont, P.; Mesri, E.

10.1101/789826 — cancer biology — Posted on 2019-10-02

3697 Varietal differences in physiological and biochemical responses to salinity stress in six finger millet plants

Mukami, A.; Ngetich, A.; Syombua, E.; Oduor, R. O.; Mbinda, W. M.

10.1101/789883 — plant biology — Posted on 2019-10-02

3698 NeuroPycon: A free Python toolbox for fast multi-modal and reproducible brain connectivity pipelines

Meunier, D.; Pascarella, A.; Altukhov, D.; Jas, M.; Combrisson, E.; Lajnef, T.; Bertrand-Dubois, D.; Hadid, V.; Alamian, G.; Alves, J.; Barlaam, F.; Saive, A.-L.; Dehgan, A.; Jerbi, K.

10.1101/789842 — neuroscience — Posted on 2019-10-02

3699 Factors influencing read coverage variation in a genome assembled using short reads

Wang, P.; Meng, F.; Moore, B. M.; Shiu, S.-H.

10.1101/790337 — genomics — Posted on 2019-10-02

3700 Massive haplotypes underlie ecotypic differentiation in sunflowers

Todesco, M.; Owens, G. L.; Bercovich, N.; Legare, J.-S.; Soudi, S.; Burge, D. O.; Huang, K.; Ostevik, K. L.; Drummond, E. B. M.; Imerovski, I.; Lande, K.; Pascual, M. A.; Cheung, W.; Staton, S. E.; Munos, S.; Nielsen, R.; Donovan, L. A.; Burke, J. M.; Yeaman, S.; Rieseberg, L. H.

10.1101/790279 — evolutionary biology — Posted on 2019-10-02

3701 longfin causes cis-ectopic expression of the kcnh2a ether-a-go-go K+ channel to autonomously prolong fin outgrowth

Stewart, S.; Le Bleu, H. K.; Yette, G. A.; Henner, A. L.; Braunstein, J. A.; Stankunas, K.

10.1101/790329 — developmental biology — Posted on 2019-10-02

3702 Large body size variation is linked to low communication success in tandem running ants

Wagner, T.; Bachenberg, L.; Glaser, S.; Oikonomou, A.; Linn, M.; Grueter, C.

10.1101/789834 — animal behavior and cognition — Posted on 2019-10-02

3703 Metabolome-informed microbiome analysis refines metadata classifications and reveals unexpected medication transfer in captive cheetahs

Gauglitz, J. M.; Morton, J. T.; Tripathi, A.; Hansen, S.; Gaffney, M.; Carpenter, C.; Weldon, K. C.; Shah, R.; Parampil, A.; Fidgett, A.; Swafford, A. D.; Knight, R.; Dorrestein, P. C.

10.1101/790063 — systems biology — Posted on 2019-10-02

3704 Reduced fronto-striatal volume in ADHD in two cohorts across the lifespan

Cupertino, R. B.; Soheili-Nezhad, S.; Grevet, E. H.; Bandeira, C. E.; Picon, F. A.; Tavares, M. E.; Naaijen, J.; van Rooij, D.; Akkermans, S.; Vitola, E. S.; Zwiers, M. P.; Hoekstra, P. J.; Breda, V.; Oosterlaan, J.; Hartman, C. A.; Beckmann, C. F.; Buitelaar, J. K.; Franke, B.; Dotto Bau, C. H.; Sprooten, E.

10.1101/790204 — neuroscience — Posted on 2019-10-02

3705 Patterns of purifying selection in marine microbes reveal optimization in the genetic code

Shenhav, L.; Zeevi, D.

10.1101/790345 — microbiology — Posted on 2019-10-02

3706 Defining the DmsA Signal Sequence Interaction with DmsD And TatBC

Ghosh, D.; Ramasamy, S. D.

10.1101/789909 — microbiology — Posted on 2019-10-02

3707 Shigella flexneri disruption of host cell-cell tension promotes intercellular spread

Duncan, J. K.; Wiscovitch, A. L.; Goldberg, M. B.; Russo, B. C.

10.1101/790147 — microbiology — Posted on 2019-10-02

3708 Non-canonical autophagy in dendritic cells restricts cross-presentation and anti-tumor immunity

Sil, P.; Muse, G. W.; Wong, S.-W.; Kolb, J. P.; DeGraff, L. M.; Tucker, C. J.; Scappini, E.; Snyder, A. G.; Grimm, S.; Oberst, A.; Martinez, J.

10.1101/789867 — immunology — Posted on 2019-10-02

3709 Anthropogenic disturbance drives dispersal syndromes, demography, and gene flow in spatially structured amphibian populations

Cayuela, H.; Besnard, A.; Cote, J.; Laporte, M.; Bonnaire, E.; Pichenot, J.; Schtickzelle, N.; Bellec, A.; Joly, P.; Lena, J.-P.

10.1101/789966 — ecology — Posted on 2019-10-02

3710 Predicting Minimal Residual Disease in Acute Myeloid Leukemia through Stochastic Modeling of Clonality

Dinh, K. N.; Jaksik, R.; Corey, S.; Kimmel, M.

10.1101/790261 — cancer biology — Posted on 2019-10-02

3711 Machine and deep learning single-cell segmentation and quantification of multi-dimensional tissue images

McKinley, E. T.; Roland, J. T.; Franklin, J. L.; Macedonia, M. C.; Vega, P. N.; Shin, S.; Coffey, R. J.; Lau, K.

10.1101/790162 — bioinformatics — Posted on 2019-10-02

3712 Single-cell analysis of human retina identifies evolutionarily conserved and species-specific mechanisms controlling development.

Lu, Y.; Shiau, F.; Yi, W.; Lu, S.; Wu, Q.; Pearson, J.; Kallman, A.; Hoang, T.; Zhong, S.; Zuo, Z.; Zhao, F.; Zhang, M.; Tsai, N.; Zhou, Y.; He, S.; Zhang, J.; Stein-O'Brien, G.; Sherman, T. D.; Duan, X.; Fertig, E. J.; Goff, L.; Zack, D.; Handa, J. T.; Xu, T.; Bremner, R.; Blackshaw, S.; Wang, X.; Clark, B. S.

10.1101/779694 — neuroscience — Posted on 2019-10-02

3713 Loss of AKAP1 triggers Drp1 dephosphorylation-mediated mitochondrial fragmentation and loss in retinal ganglion cells

Edwards, G.; Perkins, G. A.; Kim, K.-Y.; Kong, Y.; Lee, Y.; Choi, S.-H.; Skowronska-Krawczyk, D.; Weinreb, R. N.; Zangwill, L.; Strack, S.; Ju, W.-K.

10.1101/790139 — neuroscience — Posted on 2019-10-02

3714 FvLcp1, a type-D fungal LysM protein with Chitin-binding domains, is a secreted protein involved in host recognition and fumonisin production in Fusarium verticillioides - maize kernel interaction

Zhang, H.; Kim, M. S.; Huang, J.; Yan, H.; Yang, T.; Song, L.; Yu, W.; Shim, W. B.

10.1101/789925 — microbiology — Posted on 2019-10-02

3715 CDK-regulated phase separation seeded by histone genes ensures precise growth and function of Histone Locus Bodies

Hur, W.; Tarzia, M.; Deneke, V. E.; Terzo, E. A.; Duronio, R. J.; Di Talia, S.

10.1101/789933 — cell biology — Posted on 2019-10-02

3716 Defective intestinal repair after short-term high fat diet due to loss of efferocytosis

Hill, A. A.; Kim, M.; Zegarra Ruiz, D. F.; Song, H.; Renfroe, M. C.; Major, A. M.; Wu, W.-J.; Norwood, K.; Diehl, G.

10.1101/790220 — cell biology — Posted on 2019-10-02

3717 Systematic Establishment of Robustness and Standards in Patient-Derived Xenograft Experiments and Analysis

Evrard, Y. A.; SRIVASTAVA, A.; Randjelovic, J.; Arunachalam, S.; Bult, C. J.; Chen, H.; Chen, L.; Davies, M.; Davies, S.; Davis-Dusenbery, B.; DiGiovanna, J.; Ding, L.; Doroshow, J. H.; Fang, B.; Frech, C.; Govindan, R.; Ha, M. J.; Herlyn, M.; Jeon, R.; Kossenkov, A.; Li, S.; Lewis, M. T.; Lloyd, M.; Meric-Bernstam, F.; Miletic, N.; Moscow, J. A.; Neuhauser, S.; Nix, D.; Patidar, R.; Rebecca, V.; Robinson, P. N.; Rosains, J.; Roth, J.; Seth, I.; Stankovic, T.; Stanojevic, A.; Van Tine, B. A.; Welm, A.; Welm, B.; Wickramasinghe, J.; Woo, X. Y. N.; Xiao, M.; Zhao, Z.-m.; Dean, D. A.; Morris, J.;

10.1101/790246 — cancer biology — Posted on 2019-10-02

3718 Access to unexplored regions of sequence space in directed enzyme evolution via insertion/deletion mutagenesis

Emond, S.; Petek, M.; Kay, E.; Heames, B.; Devenish, S.; Tokuriki, N.; Hollfelder, F.

10.1101/790014 — biochemistry — Posted on 2019-10-02

3719 CCR5-del32 is not deleterious in the homozygous state in humans

Sulem, P.; Gudbjartsson, D.; Mars, N.; Karjalainen, J.; Ripatti, S.; Palotie, A.; Stefansson, K.; Daly, M. J.

10.1101/788117 — genetics — Posted on 2019-10-02

3720 Dopamine 2 receptor signaling controls the daily burst in phagocytic activity in the mouse retinal pigment epithelium

Goyal, V.; DeVera, C.; Laurent, V.; Sellers, J.; Chrenek, M. A.; Hicks, D.; Baba, K.; Iuvone, P. M.; Tosini, G.

10.1101/789917 — cell biology — Posted on 2019-10-02

3721 Technical artifact drives apparent deviation from Hardy-Weinberg equilibrium at CCR5-Δ32 and other variants in gnomAD

Karczewski, K. J.; Gauthier, L. D.; Daly, M. J.

10.1101/784157 — genomics — Posted on 2019-10-02

3722 No statistical evidence for an effect of CCR5-Δ32 on lifespan in the UK Biobank cohort

Maier, R. M.; Akbari, A.; Wei, X.; Patterson, N.; Nielsen, R. J.; Reich, D. E.

10.1101/787986 — genetics — Posted on 2019-10-02

3723 Isolation and characterisation of watermelon (Citrullus lanatus) extracellular vesicles and their cargo

Timms, K.; Holder, B.; Day, A.; McLaughlin, J.; Westwood, M.; Forbes, K.

10.1101/791111 — plant biology — Posted on 2019-10-02

3724 Micro-scale fluid behavior during cryo-EM sample blotting

Armstrong, M.; Han, B.-G.; Gomez, S.; Turner, J.; Fletcher, D. A.; Glaeser, R. M.

10.1101/791285 — biophysics — Posted on 2019-10-02

3725 3D super-resolution deep-tissue imaging in living mice

Velasco, M. G. M.; Zhang, M.; Antonello, J.; Yuan, P.; Allgeyer, E. S.; May, D.; M'Saad, O.; Kidd, P.; Barentine, A. E. S.; Greco, V.; Grutzendler, J.; Booth, M. J.; Bewersdorf, J.

10.1101/790212 — biophysics — Posted on 2019-10-02

3726 Expanding functional protein sequence space using generative adversarial networks

Repecka, D.; Jauniskis, V.; Karpus, L.; Rembeza, E.; Zrimec, J.; Rokaitis, I.; Poviloniene, S.; Laurynenas, A.; Abuajwa, W.; Savolainen, O.; Meskys, R.; Engqvist, M. K.; Zelezniak, A.

10.1101/789719 — synthetic biology — Posted on 2019-10-02

3727 Testing the myth of humid versus dry cold: birds do not care

O'Connor, R. S.; Vezina, F.

10.1101/789792 — zoology — Posted on 2019-10-02

3728 ZMIZ1 - A novel Estrogen Receptor co-activator that enhances the growth of ER+ breast cancer

Godicelj, A.; Blake, R.; Giorgi, F. M.; Gehrung, M.; Kumar, S.; Cullen, A. E.; Kishore, K.; Sawle, A.; Eldridge, M.; Markowetz, F.; Holding, A. N.

10.1101/789610 — cancer biology — Posted on 2019-10-02

3729 Novel repellents for the blood-sucking insects Rhodnius prolixus and Triatoma infestans, vectors of Chagas disease

Ramirez, M.; Ortiz, M. I.; Guerenstein, P.; Molina, J.

10.1101/789602 — animal behavior and cognition — Posted on 2019-10-02

3730 Deletion of Stk11 and Fos in BLA projection neurons alters their intrinsic excitability and impairs formation of long-term aversive memory

Levitan, D.; Liu, C.; Lin, J.-Y.; wachutka, J.; Marrero-Garcia, Y.; Beltrame, E.; Shima, Y.; Ali-Marandi Ghoddousi, R.; Yang, T.; Katz, D. B.; Nelson, S. B.

10.1101/787325 — neuroscience — Posted on 2019-10-02

3731 Compensatory replacement of the BigH1 variant histone by canonical H1 supports normal embryonic development in Drosophila

li, k. k.; han, d.; chen, f.; li, r.; Zhou, B.-R.; Bai, Y.; yuan, k.; rong, y.

10.1101/789735 — developmental biology — Posted on 2019-10-02

3732 Topological analysis of TMEM180, a newly identified membrane protein that is highly expressed in colorectal cancer cells

Anzai, T.; Matsumura, Y.

10.1101/789750 — biophysics — Posted on 2019-10-02

3733 Lipid Chaperoning of a Thylakoid Protease Whose Stability is Modified by the Protonmotive Force

Theg, S. M.; McKinnon, L. J.; Fukushima, J.; Inoue, K.

10.1101/788471 — biochemistry — Posted on 2019-10-02

3734 Optogenetic control of excitatory post-synaptic differentiation through neuroligin-1 tyrosine phosphorylation

Thoumine, O.; Letellier, M.; Lagardere, M.; Tessier, B.; Janovjak, H.

10.1101/788638 — neuroscience — Posted on 2019-10-02

3735 CDCP1 controls compensatory renal growth by integrating Src and Met signaling

Okada, M.; Kajiwara, K.; Aoki, K.; Okuzaki, D.; Matsumoto, K.

10.1101/789339 — cell biology — Posted on 2019-10-02

3736 Comprehensive palmitoyl-proteomic analysis identifies distinct protein signatures for large and small cancer-derived extracellular vesicles

Mariscal, J.; Vagner, T.; Kim, M.; Zhou, B.; Chin, A.; Zandian, M.; Freeman, M. R.; You, S.; Zijlstra, A.; Yang, W.; Di Vizio, D.

10.1101/787499 — cancer biology — Posted on 2019-10-02

3737 Membrane insertion of soluble CLIC1 into active chloride channels is triggered by specific divalent cations

Varela, L.; Hendry, A. C.; Medina-Carmona, E.; Cantoni, D.; Ortega-Roldan, J. L.

10.1101/638080 — biochemistry — Posted on 2019-10-02

3738 Flies exploit predictable perspectives and backgrounds to enhance iridescent signal salience and mating success

White, T. E.; Vogel-Ghibely, N.; Butterworth, N. J.

10.1101/733758 — animal behavior and cognition — Posted on 2019-10-02

3739 Pseudomonas mRNA 2.0: Boosting Gene Expression Through Enhanced mRNA Stability and Translational Efficiency

Neves, D.; Vos, S.; Blank, L. M.; Ebert, B. E.

10.1101/787127 — synthetic biology — Posted on 2019-10-02

3740 Facial shape and allometry quantitative trait locus intervals in the Diversity Outbred mouse are enriched for known skeletal and facial development genes

Katz, D. C.; Aponte, J. D.; Liu, W.; Green, R. M.; Mayeux, J. M.; Pollard, K. M.; Pomp, D.; Munger, S. C.; Murray, S.; Roseman, C. C.; Percival, C. J.; Cheverud, J.; Marcucio, R.; Hallgrimsson, B.

10.1101/787291 — genetics — Posted on 2019-10-02

3741 Benchmarking principal component analysis for large-scale single-cell RNA-sequencing

Tsuyuzaki, K.; Sato, H.; Sato, K.; Nikaido, I.

10.1101/642595 — bioinformatics — Posted on 2019-10-02

3742 LuxUS: DNA methylation analysis using generalized linear mixed model with spatial correlation

Halla-aho, V.; Lähdesmäki, H.

10.1101/536722 — bioinformatics — Posted on 2019-10-02

3743 Mechanistic Inference of Brain Network Dynamics with Approximate Bayesian Computation

West, T. O.; Berthouze, L.; Farmer, S. F.; Cagnan, H.; Litvak, V.

10.1101/785568 — neuroscience — Posted on 2019-10-02

3744 Cross-Sectional and Longitudinal Validation of Serum Neurofilament Light Chain (NfL) as a Biomarker of Parkinson’s Disease Progression

Mollenhauer, B.; Dakna, D.; Liu, T.-Y.; Galasko, D.; Foroud, T.; Zetterberg, H.; Schade, S.; Gera, R.; Wang, W.; Gao, F.; Kruse, N.; Frasier, M.; Chahine, L.; Coffey, C. S.; Singleton, A. B.; Simuni, T.; Weintraub, D.; Seibyl, J.; Toga, A. W.; Tanner, C. M.; Kieburtz, K.; Marek, K.; Siderowf, A.; Cedarbaum, J. M.; Hutten, S. J.; Trenkwalder, C.; Graham, D.

10.1101/762237 — neuroscience — Posted on 2019-10-02

3745 Network analysis of mesoscale mouse brain structural connectome yields modular structure that aligns with anatomical regions and sensory pathways

Pailthorpe, B. A.

10.1101/755041 — neuroscience — Posted on 2019-10-02

3746 Availability of Zinc Impacts Interactions Between Streptococcus sanguinis and Pseudomonas aeruginosa in Co-culture

Li, K.; Gifford, A. H.; Hampton, T. H.; O'Toole, G.

10.1101/789099 — microbiology — Posted on 2019-10-02

3747 When do individuals maximize their inclusive fitness?

Lehmann, L.; Rousset, F.

10.1101/624775 — evolutionary biology — Posted on 2019-10-02

3748 Enhancing droplet-based single-nucleus RNA-seq resolution using the semi-supervised machine learning classifier DIEM

Alvarez, M.; Rahmani, E.; Jew, B.; Garske, K. M.; Miao, Z.; Benhammou, J. N.; Ye, C. J.; Pisegna, J. R.; Pietilainen, K. H.; Halperin, E.; Pajukanta, P.

10.1101/786285 — bioinformatics — Posted on 2019-10-02

3749 A generalization of partial least squares regression and correspondence analysis for categorical and mixed data: An application with the ADNI data

Beaton, D.; Alzheimer's Disease Neuroimaging Initiative, ; Saporta, G.; Abdi, H.

10.1101/598888 — bioinformatics — Posted on 2019-10-02

3750 scVAE: Variational auto-encoders for single-cell gene expression data

Gronbech, C. H.; Vording, M. F.; Timshel, P. N.; Sonderby, C. K.; Pers, T. H.; Winther, O.

10.1101/318295 — bioinformatics — Posted on 2019-10-02

3751 Effects of irrigation scheduling and different irrigation methods on onion and water productivity in Tigray, northern Ethiopia

Haile, G. G.; Gebremicael, T. G.; Kifle, M.; Gebremedhin, T.

10.1101/790105 — plant biology — Posted on 2019-10-01

3752 Allium roseum L. extract inhibits amyloid beta aggregation and toxicity involved in Alzheimers disease

Boubakri, A.; Leri, M.; Bucciantini, M.; Najjaa, H.; Ben Arfa, A.; Stefani, M.; Neffati, M.

10.1101/789651 — plant biology — Posted on 2019-10-01

3753 Self-controlled practice and nudging during structural learning of a novel control interface

Lee, M.-H.; Jayasinghe, S. A. L.

10.1101/789644 — neuroscience — Posted on 2019-10-01

3754 Fractal Dimension of Cortical Functional Connectivity Networks Predicts Severity in Disorders of Consciousness

Varley, T.; Craig, M.; Adapa, R.; Finoia, P.; Williams, G.; Allanson, J.; Pickard, J.; Menon, D.; Stamatakis, E.

10.1101/789636 — neuroscience — Posted on 2019-10-01

3755 Vector bionomics and vectorial capacity as emergent properties of mosquito behaviors and ecology

Wu, S. L.; Sanchez, H. M.; Henry, J. M.; Citron, D. T.; Zhang, Q.; Compton, K. E.; Liang, B.; Verma, A.; Cummings, D. A. T.; Le Menach, A.; Scott, T. W.; Wilson, A. L.; Lindsay, S. W.; Moyes, C. L.; Hancock, P. A.; Russell, T. L.; Burkot, T. R.; Marshall, J. M.; Kiware, S.; Reiner, R. C.; Smith, D. L.

10.1101/790097 — ecology — Posted on 2019-10-01

3756 Feasibility of real-time in vivo 89Zr-DFO-labeled CAR T-cell trafficking using PET imaging

Lee, S. H.; Soh, H.; Chung, J. H.; Cho, E. H.; Lee, S. J.; Ju, J.-M.; Shin, J. H.; Kim, H.; Oh, S. J.; Lee, S.-J.; Choi, K.; Kim, S.-Y.; Ryu, J.-S.

10.1101/789727 — cancer biology — Posted on 2019-10-01

3757 Temperature shapes movement and habitat selection by a heat-sensitive ungulate

Alston, J. M.; Joyce, M. J.; Merkle, J. A.; Moen, R. A.

10.1101/790048 — zoology — Posted on 2019-10-01

3758 Genetic diversity and multiplicity of infection in Fasciola gigantica isolates of Pakistani livestock

Rehman, Z. U.; Zahid, O.; Rashid, I.; Ali, Q.; Akbar, M. H.; Oneeb, M.; Shehzad, W.; Ashraf, K.; Sargison, N.; Chaudhry, U.

10.1101/789297 — genetics — Posted on 2019-10-01

3759 Cleavage-furrow formation without F-actin in Chlamydomonas

Onishi, M.; Umen, J. G.; Cross, F. R.; Pringle, J. R.

10.1101/789016 — cell biology — Posted on 2019-10-01

3760 A high-content screen profiles cytotoxic microRNAs in pediatric and adult glioblastoma cells and identifies miR-1300 as a potent inducer of cytokinesis failure

Boissinot, M.; King, H.; Adams, M.; Higgins, J.; Ward, T. A.; Steele, L. P.; Tams, D.; Morton, R.; Polson, E.; da Silva, B.; Droop, A. P.; Hayes, J. L.; Martin, H.; Laslo, P.; Morrison, E. E.; Tomlinson, D. C.; Wurdak, H.; Bond, J.; Lawler, S. E.; Short, S. C.

10.1101/789438 — cancer biology — Posted on 2019-10-01

3761 Genome-wide quantitative trait loci mapping on Verticilliumw

Rashid, H. o.; Li, P.; Chen, T.; Palanga, K. K.; Gong, W.; Ge, Q.; Gong, J.; Liu, A.; Lu, Q.; Diouf, L.; Sarfraz, Z.; Jamshed, M.; Shi, Y.; Yuan, Y.

10.1101/788901 — plant biology — Posted on 2019-10-01

3762 Optogenetic modulation of TDP-43 oligomerization fast-forwards ALS-related pathologies in the spinal motor neurons

Asakawa, K.; Handa, H.; Kawakami, K.

10.1101/789057 — neuroscience — Posted on 2019-10-01

3763 Functional and structural properties of highly responsive somatosensory neurons in mouse barrel cortex

Barz, C. S.; Garderes, P.-M.; Ganea, D.; Reischauer, S.; Feldmeyer, D.; Haiss, F.

10.1101/789347 — neuroscience — Posted on 2019-10-01

3764 Genetic Mapping in Autohexaploid Sweet Potato with Low-coverage NGS-based Genotyping Data

Yamamoto, E.; Shirasawa, K.; Kimura, T.; Monden, Y.; Tanaka, M.; Isobe, S.

10.1101/789198 — genetics — Posted on 2019-10-01

3765 Metabolic remodeling by TIGAR overexpression is a therapeutic target in esophageal squamous-cell carcinoma

Lin, D.; Wu, C.; Chu, J.; Niu, X.; Chang, J.; Shao, M.; Peng, L.; Xi, Y.; Lin, A.; Wang, C.; Cui, Q.; Luo, Y.; Fan, W.; Chen, Y.; Sun, Y.; Guo, W.; Tan, W.

10.1101/789271 — cancer biology — Posted on 2019-10-01

3766 Circadian- and sex-dependent increases in intravenous cocaine self-administration in Npas2 mutant mice

DePoy, L.; Becker-Krail, D.; Shah, N.; Logan, R.; McClung, C.

10.1101/788786 — neuroscience — Posted on 2019-10-01

3767 Somatic hypermutation analysis for improved identification of B cell clonal families from next-generation sequencing data

Nouri, N.; Kleinstein, S.

10.1101/788620 — immunology — Posted on 2019-10-01

3768 Spatially-explicit modeling improves empirical characterization of dispersal: theory and a case study

Karisto, P.; Suffert, F.; Mikaberidze, A.

10.1101/789156 — ecology — Posted on 2019-10-01

3769 Time-Space Fourier κFormula Filter for Motion Artifacts Compensation during Transcranial Fluorescence Brain Imaging

Molodij, G.; Meglinski, I.; Sdobnov, A.; Kuznetsov, Y.; Harmelin, A.; Kalchenko, V.

10.1101/789370 — bioengineering — Posted on 2019-10-01

3770 Overcoming Spatial Deskilling Using Landmark-Based Navigation Assistance Systems

Wunderlich, A.; Gramann, K.

10.1101/789529 — neuroscience — Posted on 2019-10-01

3771 A general principle of dendritic constancy – a neuron’s size and shape invariant excitability

Cuntz, H.; Bird, A. D.; Beining, M.; Schneider, M.; Mediavilla, L.; Hoffmann, F. Z.; Deller, T.; Jedlicka, P.

10.1101/787911 — neuroscience — Posted on 2019-10-01

3772 Visualization and Analysis of Whole Depot Adipose Tissue Innervation

Willows, J. W.; Blaszkiewicz, M.; Lamore, A.; Borer, S.; Dubois, A. L.; Garner, E.; Breeding, W. P.; Tilbury, K. B.; Khalil, A.; Townsend, K. L.

10.1101/788885 — neuroscience — Posted on 2019-10-01

3773 Neurobiological successor features for spatial navigation

de Cothi, W.; Barry, C.

10.1101/789412 — neuroscience — Posted on 2019-10-01

3774 Both Determinants of Allosteric and Active Sites Responsible for Catalytic Activity of Delta 12 Fatty Acid Desaturase by Domain Swapping

Shi, H.; Tian, J.; Wu, C.; Li, M.; An, F.; Wu, R.; Shao, J.; Zheng, Y.; Luo, X.; Tao, D.; Chen, X.; Pi, Y.; Zhao, C.; Yue, X.; Wu, J.

10.1101/789503 — molecular biology — Posted on 2019-10-01

3775 Availability of Zinc Impacts Interactions Between Streptococcus sanguinis and Pseudomonas aeruginosa in Co-culture

Li, K.; Gifford, A. H.; Hampton, T. H.; O'Toole, G.

10.1101/789099 — microbiology — Posted on 2019-10-01

3776 c-di-AMP hydrolysis by a novel type of phosphodiesterase promotes differentiation of multicellular bacteria

Latoscha, A.; Drexler, D. J.; Al-Bassam, M. M.; Kaever, V.; Findlay, K. C.; Witte, G.; Tschowri, N.

10.1101/789354 — microbiology — Posted on 2019-10-01

3777 Single cell genomic characterization reveals the cellular reprogramming of the gastric tumor microenvironment

Sathe, A.; Grimes, S.; Lau, B. T.; Chen, J.; Suarez, C.; Huang, R.; Poultsides, G.; Ji, H.

10.1101/783027 — cancer biology — Posted on 2019-10-01

3778 Defining relative mutational difficulty to understand cancer formation and prevention

Jiang, H.; Shan, L.; Yu, J.; He, J. Z.; Chen, S. S.; Liu, X. M.; Ding, Y. H.; Xu, L.; Zhao, J.; Yang, L. A.

10.1101/789313 — cancer biology — Posted on 2019-10-01

3779 A NINE-YEAR LONGITUDINAL STUDY IN THE BLOOD OF A SUPERCENTENARIAN REVEALS AN EXTENSIVE SUBCLONAL ARCHITECTURE AND ONGOING SUBCLONAL DYNAMICS

van den Akker, E. B.; Makrodimitris, S.; Hulsman, M.; Brugman, M. H.; Nikolic, T.; Bradley, T.; Waisfisz, Q.; Baas, F.; Jakobs, M. E.; de Jong, D.; Slagboom, P. E.; Staal, F. J.; Reinders, M. J.; Holstege, H.

10.1101/788752 — immunology — Posted on 2019-10-01

3780 Methylation variation promotes phenotypic diversity and evolutionary potential in a millenium-old clonal seagrass meadow

Jueterbock, A.; Boström, C.; Coyer, J. A.; Olsen, J. L.; Kopp, M.; Dhanasiri, A. K.; Smolina, I.; Arnaud-Haond, S.; Van de Peer, Y.; Hoarau, G.

10.1101/787754 — evolutionary biology — Posted on 2019-10-01

3781 Ectopic Expression of Virus Innexins in Heliothis virescens Disrupts Hemocyte-Mediated Encapsulation and Host Viability

Zhang, P.; Turnbull, M. W.

10.1101/788661 — zoology — Posted on 2019-10-01

3782 Impaired Efflux of the Siderophore Enterobactin Induces Envelope Stress in Escherichia coli

Guest, R. L.; Court, E. A.; Waldon, J. L.; Schock, K. A.; Raivio, T. L.

10.1101/779884 — microbiology — Posted on 2019-10-01

3783 Comparative genomics of global optrA-carrying Enterococcus faecalis uncovers common genetic features and a chromosomal hotspot for optrA acquisition

Freitas, A. R.; Tedim, A. P.; Novais, C.; Peixe, L. V.

10.1101/785295 — genomics — Posted on 2019-10-01

3784 Phylogeny and Multiple Independent Whole-Genome Duplication Events in the Brassicales

Mabry, M. E.; Brose, J. M.; Blischak, P. D.; Sutherland, B.; Dismukes, W. T.; Bottoms, C. A.; Edger, P. P.; Washburn, J. D.; An, H.; Hall, J. C.; McKain, M. R.; Al-Shehbaz, I.; Barker, M. S.; Schranz, M. E.; Conant, G. C.; Pires, J. C.

10.1101/789040 — evolutionary biology — Posted on 2019-10-01

3785 Breeding at higher latitude as measured by stable isotope is associated with higher photoperiod threshold and delayed reproductive development in a songbird

Singh, D.; Reed, S. R.; Kimmitt, A. A.; Alford, K. A.; Ketterson, E. D.

10.1101/789008 — ecology — Posted on 2019-10-01

3786 The primary structural photoresponse of phytochrome proteins captured by a femtosecond X-ray laser

Claesson, E.; Yuan Wahlgren, W.; Takala, H.; Pandey, S.; Castillon, L.; Kuznetsova, V.; Henry, L.; Carrillo, M.; Panman, M.; Kubel, J.; Nanekar, R.; Isaksson, L.; Nimmrich, A.; Cellini, A.; Morozov, D.; Maj, M.; Kurttila, M.; Bosman, R.; Nango, E.; Tanaka, R.; Tanaka, T.; Fangjia, L.; Iwata, S.; Owada, S.; Moffat, K.; Groenhof, G.; Stojkovic, E.; Ihalainen, J.; Schmidt, M.; Westenhoff, S.

10.1101/789305 — biophysics — Posted on 2019-10-01

3787 CellWell: A micropatterned biphasic nanocomposite platform for culturing chondrocytes

Saraswat, R.; Ratnayake, I.; Perez, E. C.; Schutz, W. M.; Zhu, Z.; Ahrenkiel, S. P.; Wood, S. T.

10.1101/790030 — bioengineering — Posted on 2019-10-01

3788 GENOMIC COMPETITION FOR NOISE REDUCTION SHAPED EVOLUTIONARY LANDSCAPE OF MIR-4673

Farahani, R.; Rezaei-Lotfi, S.; Hunter, N.

10.1101/788984 — systems biology — Posted on 2019-10-01

3789 Pulmonary acini exhibit complex changes during postnatal rat lung development

Haberthür, D.; Yao, E.; Barre, S. F.; Cremona, T. P.; Tschanz, S. A.; Schittny, J. C.

10.1101/786681 — physiology — Posted on 2019-10-01

3790 Social behavioral deficits in NF1 emerge from peripheral chemosensory neuron dysfunction.

Moscato, E. H.; Dubowy, C.; Walker, J. A.; Kayser, M. S.

10.1101/790055 — neuroscience — Posted on 2019-10-01

3791 Cortico-striatal synaptic plasticity underlying compulsive reward seeking

Harada, M.; Hiver, A.; Pascoli, V.; Lüscher, C.

10.1101/789495 — neuroscience — Posted on 2019-10-01

3792 Label-free characterization of Amyloid-β-plaques and associated lipids in brain tissues using stimulated Raman scattering microscopy

Schweikhard, V.; Baral, A.; Krishnamachari, V.; Hay, W. C.; Fuhrmann, M.

10.1101/789248 — neuroscience — Posted on 2019-10-01

3793 Toxoplasma induces stripping of perisomatic inhibitory synapses

Carrillo, G. L.; Ballard, V. A.; Glausen, T.; Boone, Z.; Teamer, J.; Hinkson, C. L.; Wohlfert, E. A.; Blader, I. J.; Fox, M. A.

10.1101/788190 — neuroscience — Posted on 2019-10-01

3794 The early life microbiota protects neonatal mice from pathological small intestinal epithelial cell shedding

Hughes, K. H.; Schofield, Z.; Dalby, M. J.; Caim, S.; Chalklen, L.; Bernuzzi, F.; Alcon-Giner, C.; Le Gall, G.; Watson, A. J.; Hall, L. J.

10.1101/789362 — microbiology — Posted on 2019-10-01

3795 The genetic origins of Saint Helena’s liberated Africans

Sandoval-Velasco, M.; Jagadeesan, A.; Avila-Arcos, M. C.; Gopalakrishnan, S.; Ramos-Madrigal, J.; Moreno-Mayar, J. V.; Renaud, G.; Cruz-Davalos, D. I.; Johannesdottir, E.; Watson, J.; Robson-Brown, K.; Pearson, A.; Helgason, A.; Gilbert, M. T. P.; Schroeder, H.

10.1101/787515 — genomics — Posted on 2019-10-01

3796 Paracrine control of α-cell glucagon exocytosis is compromised in human type-2 diabetes

Omar-Hmeadi, M.; Lund, P.-E.; Gandasi, N.; Tengholm, A.; Barg, S.

10.1101/789545 — cell biology — Posted on 2019-10-01

3797 CDK8 and CDK19 kinases have non-redundant oncogenic functions in hepatocellular carcinoma

Bacevic, K.; Prieto, S.; Caruso, S.; Camasses, A.; Dubra, G.; Ursic-Bedoya, J.; Lozano, A.; Butterworth, J.; Zucman-rossi, J.; Hibner, U.; Fisher, D.; Gregoire, D.

10.1101/789586 — cancer biology — Posted on 2019-10-01

3798 Tiled STED Imaging of Extended Sample Regions

Alvelid, J.; Testa, I.

10.1101/789487 — biophysics — Posted on 2019-10-01

3799 Single-molecule imaging reveals control of parental histone recycling by free histones during DNA replication

Gruszka, D. T.; Xie, S.; Kimura, H.; Yardimci, H.

10.1101/789578 — biophysics — Posted on 2019-10-01

3800 Motorized shoes induce robust sensorimotor adaptation in walking

Torres-Oviedo, G.; Aucie, Y.; Sargent, R.; Zhang, X.

10.1101/788943 — bioengineering — Posted on 2019-10-01

3801 Expanding AHL Acylases Horizon - Insights From Structural Analysis of Choloylglycine Hydrolases From Shewanella lohica PV-4

Philem, P. D.; Yadav, Y.; Sunder, A.; Ghosh, D.; Prabhune, A.; Ramasamy, S.

10.1101/788646 — biochemistry — Posted on 2019-10-01

3802 Conifers exhibit a characteristic inactivation of auxin to maintain tissue homeostasis

Brunoni, F.; Collani, S.; Casanova.Saez, R.; Simura, J.; Karady, M.; Schmid, M.; Ljung, K.; Bellini, C.

10.1101/789420 — plant biology — Posted on 2019-10-01

3803 Differential Effects of SUMO1/2 on Circadian Protein PER2 Stability and Function

Chen, L.-C.; Hsieh, Y.-L.; Kuo, T.-Y.; Chou, Y.-C.; Hsu, P.-H.; Hwang-Verslues, W. W.

10.1101/789222 — molecular biology — Posted on 2019-10-01

3804 Human blood exposure to Clostridium perfringens epsilon toxin may shed light on erythrocyte fragility during active multiple sclerosis

Fischetti, V. A.; eleso, O. E.; Rumah, K. R.

10.1101/789123 — microbiology — Posted on 2019-10-01

3805 Isolation and Characterization of a Rhizobium Bacterium Associated with the Toxic Dinoflagellate Gambierdiscus balechii

WU, Z.; Yang, X.; Lin, S.; Lee, W. H.; Lam, P. K. S.

10.1101/789107 — microbiology — Posted on 2019-10-01

3806 β-cell dedifferentiation is associated with epithelial-mesenchymal transition triggered by miR-7-mediated repression of mSwi/Snf complex

Mak, T.; von Ohlen, Y.; Wang, Y.-F.; Kane, E.; Pereira, P. E.; Jurgaityte, K.; Chabosseau, P.; Distaso, W.; Salem, V.; Tomas, A.; Stoffel, M.; Marchetti, P.; Shapiro, J.; Rutter, G. A.; Latreille, M.

10.1101/789461 — genomics — Posted on 2019-10-01

3807 Estimating the power of sequence covariation for detecting conserved RNA structure

Rivas, E.; Clements, J.; Eddy, S. R.

10.1101/789404 — genomics — Posted on 2019-10-01

3808 Prevalence of RFC1-Mediated Spinocerebellar Ataxia in a United States Ataxia Cohort

Syriani, D. A.; Wong, D.; De Gusmao, C. M.; Andani, S.; Mao, Y.; Glotzer, G.; Lockhart, P.; Hassin-Baer, S.; Khurana, V.; Das, S.; Gomez, C. M.; Perlman, S.; Fogel, B.

10.1101/790006 — genetics — Posted on 2019-10-01

3809 A method for rapid selection of randomly induced mutations in a gene of interest using CRISPR/Cas9 mediated activation of gene expression.

Ng, W. A.; Ma, A.; Chen, M.; Reed, B. H.

10.1101/788372 — genetics — Posted on 2019-10-01

3810 THE INFLUENCE OF ECOSYSTEM AND PHYLOGENY ON TROPICAL TREE CROWN SIZE AND SHAPE

Shenkin, A.; Patrick Bentley, L.; Oliveras, I.; Salinas, N.; Adu-Bredu, S.; Marimon, B. H.; Marimon, B.; Peprah, T.; Lopez Choque, E.; Trujillo Rodriguez, L. R.; Clemente Arenas, E. R.; Adonteng, C.; Seidu, J.; Barbosa Passos, F.; Matias Reis, S.; Blonder, B.; Silman, M.; Enquist, B. J.; Asner, G. P.; Malhi, Y.

10.1101/789255 — ecology — Posted on 2019-10-01

3811 A Lamin Associated Chromatin Model for Chromosome Organization

Maji, A.; Ahmed, J. A.; Roy, S.; Chakrabarti, B.; Mitra, M. K.

10.1101/788497 — biophysics — Posted on 2019-10-01

3812 CtIP promotes the motor activity of DNA2 to accelerate long-range DNA end resection

Ceppi, I.; Howard, S. M.; Kasaciunaite, K.; Pinto, C.; Anand, R.; Seidel, R.; Cejka, P.

10.1101/789230 — biochemistry — Posted on 2019-10-01

3813 Robust organelle size control via bursty growth

Amiri, K. P.; Kalish, A.; Mukherji, S.

10.1101/789453 — systems biology — Posted on 2019-10-01

3814 Relationship between spiking activity and simultaneously recorded fluorescence signals in transgenic mice expressing GCaMP6

Huang, L.; Knoblich, U.; Ledochowitsch, P.; Lecoq, J.; Reid, R. C.; de Vries, S. E. J.; Buice, M. A.; Murphy, G. J.; Waters, J.; Koch, C.; Zeng, H.; Li, L.

10.1101/788802 — neuroscience — Posted on 2019-10-01

3815 Vagus nerve stimulation increases vigor to work for rewards

Neuser, M. P.; Teckentrup, V.; Kuehnel, A.; Hallschmid, M.; Walter, M.; Kroemer, N. B.

10.1101/789982 — neuroscience — Posted on 2019-10-01

3816 Impacts of Gut Microbiota on Gender Bias in Intestinal Pro-Inflammatory Immune Phenotype and Systemic Autoimmune Progression in Lupus-prone SNF1 mice

Johnson, B. M.; Gaudreau, M.-C.; Gudi, R. R.; Brown, R.; Gilkeson, G.; Vasu, C.

10.1101/787440 — immunology — Posted on 2019-10-01

3817 High-Spatial-Resolution Multi-Omics Atlas Sequencing of Mouse Embryos via Deterministic Barcoding in Tissue

Liu, Y.; Yang, M.; Deng, Y.; Su, G.; Guo, C. C.; Zhang, D.; Kim, D.; Bai, Z.; Xiao, Y.; Fan, R.

10.1101/788992 — genomics — Posted on 2019-10-01

3818 Facial shape and allometry quantitative trait locus intervals in the Diversity Outbred mouse are enriched for known skeletal and facial development genes

Katz, D. C.; Aponte, J. D.; Liu, W.; Green, R. M.; Mayeux, J. M.; Pollard, K. M.; Pomp, D. C.; Munger, S. C.; Murray, S.; Roseman, C. C.; Percival, C. J.; Cheverud, J.; Marcucio, R.; Hallgrimsson, B.

10.1101/787291 — genetics — Posted on 2019-10-01

3819 The effect of Rosovitine on mPSM explants: a real time analysis

Murray, P. J.; Dale, K. J.; Morales, L. J.; Bailey, C. S. L.

10.1101/789446 — developmental biology — Posted on 2019-10-01

3820 The roles of hox 13 genes in newt limb development and regeneration

Takeuchi, T.; Minamitani, F.; Koriyama, K.; Satoh, Y.; Suzuki, K.-i.; Shigenobu, S.; Inoue, T.; Agata, K.; Hayashi, T.

10.1101/789180 — developmental biology — Posted on 2019-10-01

3821 Retromer subunit, VPS29, regulates synaptic transmission and is required for endolysosomal function in the aging brain

Ye, H.; Ojelade, S.; Li-Kroeger, D.; Zuo, Z.; Wang, L.; Li, Y.; Gu, J. Y. J.; Tepass, U.; Rodal, A. A.; Bellen, H. J.; Shulman, J. M.

10.1101/788711 — cell biology — Posted on 2019-10-01

3822 Improved computational identification of drug response using optical measurements of human stem cell derived cardiomyocytes in microphysiological systems

Jaeger, K. H.; Charwat, V.; Charrez, B.; Finsberg, H.; Maleckar, M. M.; Wall, S.; Healy, K.; Tveito, A.

10.1101/787390 — biophysics — Posted on 2019-10-01

3823 A pair of esterases from a commensal gut bacterium remove acetylations from all positions on complex β-mannans

Michalak, L.; Leanti La Rosa, S.; Leivers, S. A.; Lindstad, L. J.; Kjendseth, A. R.; Aachmann, F. L.; Westereng, B.

10.1101/788067 — biochemistry — Posted on 2019-10-01

3824 Feeding Status Influences Adult Vine Weevil (Coleoptera: Curculionidae) Behaviour to Conspecific Volatiles

Roberts, J. M.; Kundun, J.; Pope, T. W.

10.1101/789172 — animal behavior and cognition — Posted on 2019-10-01

3825 Natural image reconstruction from brain waves: a novel visual BCI system with native feedback

Rashkov, G. V.; Bobe, A. S.; Fastovets, D. V.; Komarova, M. V.

10.1101/787101 — neuroscience — Posted on 2019-10-01

3826 Examination of zinc in the circadian system

Moshirpour, M.; Nakashima, A. S.; Sehn, N.; Smith, V. M.; Dyck, R. H.; Antle, M. C.

10.1101/790352 — neuroscience — Posted on 2019-10-01

3827 Thermodynamic destabilization informs pathogenicity assessment of a variant of uncertain significance in cardiac myosin binding protein C

Pricolo, M. R. M.; Herrero Galan, E. E.; Mazzaccara, C. C.; Losi, M. A. M.; Alegre-Cebollada, J. J.; Frisso, G. G.

10.1101/789081 — molecular biology — Posted on 2019-10-01

3828 Organic soil amendment with Spent Mushroom Substrate results in fungal colonisation, alters bacterial-fungal co-occurrence patterns and improves plant productivity.

Paula, F. S.; Tatti, E.; Thorn, C.; Abram, F.; Wilson, J.; O'Flaherty, V.

10.1101/788935 — microbiology — Posted on 2019-10-01

3829 Scarce and directly beneficial reputations support cooperation

Samu, F.; Szamado, S.; Takacs, K.

10.1101/788836 — evolutionary biology — Posted on 2019-10-01

3830 Looking for mimicry in a snake assemblage using deep learning

de Solan, T.; Renoult, J. P.; Geniez, P.; David, P.; Crochet, P.-A.

10.1101/789206 — evolutionary biology — Posted on 2019-10-01

3831 A flexible network of Vimentin intermediate filaments promotes the migration of amoeboid cancer cells through confined environments

Tudor, S. M.; Lavenus, S. B.; Logue, J. S.

10.1101/788810 — cell biology — Posted on 2019-10-01

3832 A tissue-specific collaborative mixed model for jointly analyzing multiple tissues in transcriptome-wide association studies

Shi, X.; Chai, X.; Yang, Y.; Cheng, Q.; Jiao, Y.; Huang, J.; Yang, C.; Liu, J.

10.1101/789396 — bioinformatics — Posted on 2019-10-01

3833 Decoding the neural dynamics of oculomotor decision making in humans

Thiery, T.; Saive, A.-L.; Combrisson, E.; Dehgan, A.; Bastin, J.; Kahane, P.; Berthoz, A.; Lachaux, J.-P.; Jerbi, K.

10.1101/788091 — neuroscience — Posted on 2019-10-01

3834 Vestigial Auriculomotor Activity Indicates the Direction of Auditory Attention in Humans

Strauss, D. J.; Corona-Strauss, F. I.; Schroeer, A.; Flotho, P.; Hannemann, R.; Hackley, S. A.

10.1101/786525 — neuroscience — Posted on 2019-10-01

3835 The microbiomes of seven lichen genera reveal host specificity, a reduced core community and potential as source of antimicrobials

Sierra, M. A.; Danko, D. C.; Sandoval, T. A.; Pishchany, G.; Moncada, B.; Kolter, R.; Mason, C.; Zambrano, M. M.

10.1101/789032 — microbiology — Posted on 2019-10-01

3836 Population specific reference panels are crucial for the genetic analyses of Native Hawai’ians: an example of the CREBRF locus

Lin, M.; Caberto, C.; Wan, P.; Li, Y.; Lum-Jones, A.; Tiirikainen, M.; Pooler, L.; Nakamura, B.; Sheng, X.; Porcel, J.; Lim, U.; Setiawa, V. W.; Le Marchand, L.; Wilkens, L. R.; Haiman, C. A.; Cheng, I.; Chiang, C. W. K.

10.1101/789073 — genetics — Posted on 2019-10-01

3837 Genetic architecture underlying changes in carotenoid accumulation during the evolution of the Blind Mexican cavefish, Astyanax mexicanus

Riddle, M. R.; Aspiras, A.; Damen, F.; Hutchinson, J. N.; Chinnapen, D.; Tabin, C.

10.1101/788844 — evolutionary biology — Posted on 2019-10-01

3838 Abnormal vertebral patterns in genetically heterogeneous deceased fetuses and neonates: evidence of selection against variations

Schut, P. C.; Brosens, E.; Galis, F.; Ten Broek, C. M.; Baijens, I. M.; Dremmen, M. H.; Tibboel, D.; Schol, M. P.; De Klein, A.; Eggink, A. J.; Cohen-Overbeek, T. E.

10.1101/784926 — evolutionary biology — Posted on 2019-10-01

3839 Pathway Commons: 2019 Update

Rodchenkov, I.; Babur, O.; Luna, A.; Aksoy, B. A.; Wong, J. V.; Fong, D.; Franz, M.; Siper, M. C.; Cheung, M.; Wrana, M.; Mistry, H.; Mosier, L.; Dlin, J.; Wen, Q.; O'Callaghan, C.; Li, W.; Elder, G.; Smith, P. T.; Dallago, C.; Cerami, E.; Gross, B. E.; Dogrusoz, U.; Demir, E.; Bader, G.; Sander, C.

10.1101/788521 — bioinformatics — Posted on 2019-10-01

3840 Uniform Genomic Data Analysis in the NCI Genomic Data Commons

Zhang, Z.; Hernandez, K.; Savage, J.; Li, S.; Miller, D.; Agrawal, S.; Ortuno, F.; Staudt, L.; Heath, A.; Grossman, R. L.

10.1101/788919 — bioinformatics — Posted on 2019-10-01

3841 3D Printed Microheater Sensor-Integrated, Drug-Encapsulated Microneedle Patch System for Pain Management

Yin, M.; Xiao, L.; Liu, Q.; Kwon, S.-Y.; Zhang, Y.; Sharma, P. R.; Jin, L.; Li, X. J.; Xu, B.

10.1101/788877 — bioengineering — Posted on 2019-10-01

3842 Local control of resource allocation is sufficient to model optimal dynamics in syntrophic systems

Ledder, G.; Russo, S. E.; Muller, E. B.; Peace, A.; Nisbet, R. M.

10.1101/787465 — plant biology — Posted on 2019-10-01

3843 Molecular Networks and Key Regulators of the Dysregulated Neuronal System in Alzheimer’s Disease

Wang, M.; Li, A.; Sekiya, M.; Beckmann, N. D.; Quan, X.; Schrode, N.; Fernando, M. B.; Yu, A.; Zhu, L.; Cao, J.; Lyu, L.; Horgusluoglu, E.; Wang, Q.; Guo, L.; Wang, Y.-s.; Neff, R.; Song, W.-m.; Wang, E.; Shen, Q.; Zhou, X.; Ming, C.; Ho, S.-M.; Vatansever, S.; Kaniskan, H. U.; Jin, J.; Zhou, M.-M.; Ando, K.; Ho, L.; Slesinger, P. A.; Yue, Z.; Zhu, J.; Gandy, S.; Ehrlich, M. E.; Cai, D.; Haroutunian, V.; Iijima, K.; Schadt, E.; Brennand, K.; Zhang, B.

10.1101/788323 — neuroscience — Posted on 2019-10-01

3844 Impact of early childhood malnutrition on the adult brain function: an ERP study

Roger, K.; Vannasing, P.; Tremblay, J.; Bringas Vega, M. L.; Bryce, C. P.; Rabinowitz, A. G.; Valdes-Sosa, P. A.; Galler, J. R.; Gallagher, A.

10.1101/782698 — neuroscience — Posted on 2019-10-01

3845 Long-term alterations in brain and behavior after postnatal Zika virus infections in infant macaques

Raper, J.; Kovacs-Balint, Z.; Mavinger, M.; Gumber, S.; Burke, M. W.; Habib, J.; Mattingly, C.; Fair, D.; Earl, E.; Feczko, E.; Styner, M.; Jean, S.; Cohen, J.; Suthar, M.; Sanchez, M. M.; Alvarado, M. C.; Chahroudi, A.

10.1101/788794 — neuroscience — Posted on 2019-10-01

3846 Ictal recruitment of anterior nucleus of thalamus in human focal epilepsy

Toth, E.; Ganne, C.; Pizarro, D.; Kumar, S. S.; Ilyas, A.; Romeo, A.; Riley, K. O.; Vlachos, I.; David, O.; Balasubramanian, K.; Pati, S.

10.1101/788422 — neuroscience — Posted on 2019-10-01

3847 Promoting neuronal outgrowth using ridged scaffolds coated with extracellular matrix proteins.

Siddiqui, A. M.; Brunner, R.; Harris, G. M.; Miller, A. L.; Waletzki, B. E.; Schwarzbauer, J. E.; Schwartz, J.; Yaszemski, M. J.; Windebank, A. J.; Madigan, N. N.

10.1101/788539 — neuroscience — Posted on 2019-10-01

3848 Regulation of transcription termination by FUS and TDP-43

Zhao, Y.; Ni, Z.; Pu, S.; Zhong, G.; Schmitges, F. W.; Braunschweig, U.; Blencowe, B.; Greenblatt, J.

10.1101/788778 — molecular biology — Posted on 2019-10-01

3849 Condition-dependent trade-offs maintain honest signaling: A laboratory experiment

Szamado, S.; Samu, F.; Takacs, K.

10.1101/788828 — evolutionary biology — Posted on 2019-10-01

3850 Sex-specific phenotypic effects and evolutionary history of an ancient deletion polymorphism of the human growth hormone receptor

Resendez, S.; Saitou, M.; Parisi, L.; Wo, F.; Nakagome, S.; Satta, Y.; Atilla-Gokcumen, G. E.; Mu, X.; Gokcumen, O.

10.1101/788653 — evolutionary biology — Posted on 2019-10-01

3851 Dual protease type XIII/pepsin digestion offers superior resolution and overlap for the analysis of histone tails by HX-MS

Mullahoo, J.; Zhang, T.; Clauser, K.; Carr, S. A.; Jaffe, J. D.; Papanastasiou, M.

10.1101/788463 — biochemistry — Posted on 2019-10-01

3852 Proximate Predictors of Variation in Egg Rejection Behavior by Hosts of Avian Brood Parasites

Abolins-Abols, M.; Hauber, M.

10.1101/788505 — animal behavior and cognition — Posted on 2019-10-01

3853 Central thalamus modulates consciousness by controlling layer-specific cortical interactions

Redinbaugh, M. J.; Phillilps, J. M.; Kambi, N. A.; Mohanta, S.; Andryk, S.; Dooley, G. L.; Afrasiabi, M.; Raz, A.; Saalmann, Y. B.

10.1101/776591 — neuroscience — Posted on 2019-10-01

3854 Pneumococcal attachment to epithelial cells is enhanced by the secreted peptide VP1 via its control of hyaluronic acid processing

Cuevas, R. A.; Elnaz Ebrahimi, E.; Gazioglu, O.; Yesilkaya, H.; Hiller, N. L.

10.1101/788430 — microbiology — Posted on 2019-10-01

3855 VARIATION IN BASE COMPOSITION UNDERLIES FUNCTIONAL AND EVOLUTIONARY DIVERGENCE IN NON-LTR RETROTRANSPOSONS

Ruggiero, R. P.; Boissinot, S.

10.1101/788562 — genomics — Posted on 2019-10-01

3856 The PPR14 heterochromatin tether encodes modular domains that mediate and regulate nuclear lamina targeting

Dunlevy, K. L.; Medvedeva, V.; Wilson, J. E.; Hoque, M.; Pellegrin, T.; Maynard, A.; Kremp, M. M.; Wasserman, J. S.; Poleshko, A.; Katz, R. A.

10.1101/788356 — cell biology — Posted on 2019-10-01

3857 Mapping short-latency cortical responses to electrical stimulation of thalamic motor nuclei by increasing sampling rate - a technical report

Toth, E.; Ganne, C.; Pati, S.

10.1101/788307 — neuroscience — Posted on 2019-10-01

3858 Regenerating axons and blood vessels in tissue engineered scaffolds have defined spatial relationships after spinal cord injury.

Siddiqui, A. M.; Summer, P.; Oswald, D.; Kelly, D.; Hakim, J. S.; Chen, B. K.; Yaszemski, M. J.; Windebank, A. J.; Madigan, N. N.

10.1101/788349 — neuroscience — Posted on 2019-10-01

3859 The retinoblastoma tumor suppressor limits ribosomal readthrough during oncogene induced senescence

Del Toro, N.; Lessard, F.; Tardif, S.; Bouchard, J.; Bourdeau, V.; Ferbeyre, G.; Brakier-Gingras, L.

10.1101/788380 — molecular biology — Posted on 2019-10-01

3860 Structure-Based Discovery of a Novel Small-Molecule Inhibitor of Methicillin-Resistant S. aureus

Lu, M.; Liu, J.; Kozhaya, L.

10.1101/781971 — microbiology — Posted on 2019-10-01

3861 Monitoring G-quadruplex formation with DNA carriers and solid-state nanopores

Boskovic, F. N.; Zhu, J.; Chen, K.; Keyser, U. F.

10.1101/788513 — biophysics — Posted on 2019-10-01

3862 High-throughput and all-solution phase African Swine Fever Virus (ASFV) detection using CRISPR-Cas12a and fluorescence based point-of-care system

He, Q.; Yu, D.; Bao, M.; Korensky, G.; Chen, J.; Shin, M.; Kim, J.; Park, M.; Qin, P.; Du, K.

10.1101/788489 — bioengineering — Posted on 2019-10-01

3863 Revisiting the landscape of evolutionary breakpoints across human genome using multi-way comparison

Kiani, G.; Remita, A. M.; Diallo, A. B.

10.1101/696245 — genomics — Posted on 2019-10-01

3864 Optogenetic rescue of a developmental patterning mutant

Johnson, H. E.; Shvartsman, S. Y.; Toettcher, J. E.

10.1101/776120 — developmental biology — Posted on 2019-10-01

3865 Loss of NPC1 enhances phagocytic uptake and impairs lipid trafficking in microglia

Colombo, A.; Dinkel, L.; Müller, S. A.; Sebastian Monasor, L.; Schifferer, M.; Cantuti-Castelvetri, L.; König, J.; Vidatic, L.; Bremova-Ertl, T.; Hecimovic, S.; Simons, M.; Lichtenthaler, S. F.; Strupp, M.; Schneider, S. A.; Tahirovic, S.

10.1101/789511 — neuroscience — Posted on 2019-10-01

3866 A set of functionally-defined brain regions with improved representation of the subcortex and cerebellum

Seitzman, B. A.; Gratton, C.; Marek, S.; Raut, R. V.; Dosenbach, N. U.; Schlaggar, B. L.; Petersen, S. E.; Greene, D. J.

10.1101/450452 — neuroscience — Posted on 2019-10-01

3867 Cas9-mediated gene-editing in the malaria mosquito Anopheles stephensi by ReMOT Control

Macias, V. M.; McKeand, S.; Chaverra-Rodriguez, D.; Hughes, G. L.; Fazekas, A.; Pujhari, S.; Jasinskiene, N.; James, A. A.; Rasgon, J. L.

10.1101/775312 — genetics — Posted on 2019-10-01

3868 Kin and group selection are both flawed but useful data analysis tools

smith, j.; Inglis, R. F.

10.1101/742122 — evolutionary biology — Posted on 2019-10-01

3869 Subject-independent decoding of affective states using functional near-infrared spectroscopy

Trambaiolli, L.; Tossato, J.; Cravo, A.; Biazoli, C.; Sato, J.

10.1101/228007 — neuroscience — Posted on 2019-10-01

3870 Suprathreshold contrast response in normal and anomalous trichromats

Knoblauch, K.; Marsh-Armstrong, B.; Werner, J. S.

10.1101/788331 — neuroscience — Posted on 2019-10-01

3871 A Long Lost Key Opens an Ancient Lock: Drosophila Myb Causes a Synthetic Multivulval Phenotype in Nematodes

Vorster, P. J.; Goetsch, P.; Wijeratne, T. U.; Guiley, K. Z.; Andrejka, L.; Tripati, S.; Larson, B. J.; Rubin, S. M.; Strome, S.; Lipsick, J. S.

10.1101/788265 — molecular biology — Posted on 2019-10-01

3872 Aberrant expression of the COX2/PGE2 axis is induced by activation of the RAF/MEK/ERK pathway in BRAFV595E canine urothelial carcinoma

Yoshitake, R.; Saeki, K.; Eto, S.; Shinada, M.; Nakano, R.; Sugiya, H.; Endo, Y.; Fujita, N.; Nishimura, R.; Nakagawa, T.

10.1101/786095 — cancer biology — Posted on 2019-10-01

3873 Multi-glomerular projection of single olfactory receptor neurons is conserved among amphibians

Weiss, L.; Jungblut, L. D.; Pozzi, A. G.; Zielinski, B. S.; O'Connell, L. A.; Hassenkloever, T.; Manzini, I.

10.1101/788133 — neuroscience — Posted on 2019-10-01

3874 Natural variation in the contribution of microbial density to inducible immune dynamics

Jent, D. G.; Perry, A.; Critchlow, J. T.; Tate, A. T.

10.1101/788281 — evolutionary biology — Posted on 2019-10-01

3875 Headwaters fed by subterranean ice: potential climate refugia for mountain stream communities?

Tronstad, L. M.; Hotaling, S.; Giersch, J. J.; Wilmot, O. J.; Finn, D. S.

10.1101/788273 — ecology — Posted on 2019-10-01

3876 Selective Ablation of Cancer Cells with Low Intensity Pulsed Ultrasound

Mittelstein, D. R.; Ye, J.; Schibber, E. F.; Roychoudhury, A.; Troyas, S. L.; Fekrazad, M. H.; Ortiz, M.; Lee, P. P.; Shapiro, M. G.; Gharib, M.

10.1101/779124 — bioengineering — Posted on 2019-10-01

3877 Phylogeographic and phylodynamic approaches to epidemiological hypothesis testing

Dellicour, S.; Lequime, S.; Vrancken, B.; Gill, M. S.; Bastide, P.; Gangavarapu, K.; Matteson, N.; Tan, Y.; du Plessis, L.; Fisher, A. A.; Nelson, M. I.; Gilbert, M.; Suchard, M. A.; Grubaugh, N. D.; Andersen, K. G.; Pybus, O. G.; Lemey, P.

10.1101/788059 — evolutionary biology — Posted on 2019-10-01

3878 Role of Proinsulin Self-Association in Mutant INS gene-induced Diabetes of Youth

Liu, M.; Arvan, P.; Sun, J.; Xiong, Y.; Li, X.; Haataja, L.; Chen, W.; Mir, S. A.; Madley, R.; Larkin, D.; Anjum, A.; Dhayalan, B.; Rege, N. K.; Wickramasinghe, N. D.; Weiss, M. A.; Itkin-Ansari, P.; Kaufman, R. J.; Ostrov, D. A.

10.1101/786970 — cell biology — Posted on 2019-10-01

3879 FICD activity and AMPylation remodelling modulate human neurogenesis.

Kielkowski, P.; Buchsbaum, I. Y.; Kirsch, V. C.; Bach, N. C.; Cappello, S.; Drukker, M.; Sieber, S. A.

10.1101/787929 — biochemistry — Posted on 2019-10-01

3880 Intergenerational transmission of longevity is not affected by other familial factors: Evidence from 16,905 Dutch families from Zeeland, 1812-1962

Mourits, R. J.; Berg, N. v. d.; Rodriguez-Girondo, M.; Mandemakers, K.; Slagboom, P. E.; Beekman, M.; Janssens, A. P. P. O.

10.1101/781500 — genetics — Posted on 2019-10-01

3881 All-atom Molecular Dynamics model for mycobacterial plasma membrane

Rheingatnz Scaini, J. L.; Wherli, A. V.; Rodrigues de Lima, V.; Almeida da Silva, P. E.; Bordin, J. R.; Machado, K. S.

10.1101/788299 — biophysics — Posted on 2019-10-01

3882 Identifying differences in bile acid pathways for cholesterol clearance in Alzheimer’s disease using metabolic networks of human brain regions

Baloni, P.; Funk, C. C.; Yan, J.; Yurkovich, J. T.; Kueider-Paisley, A.; Nho, K.; Heinken, A.; Jia, W.; Mahmoudiandehkordi, S.; Louie, G.; Saykin, A. J.; Arnold, M.; Kastenmueller, G.; Griffiths, W.; Thiele, I.; AMP-AD consortium, ; The Alzheimer's Disease Metabolomics Consortium, ; Kaddurah-Daouk, R.; Price, N. D.

10.1101/782987 — systems biology — Posted on 2019-10-01

3883 Loss of NPC1 enhances phagocytic uptake and impairs lipid trafficking in microglia

Tahirovic, S.; Colombo, A.; Dinkel, L.; Müller, S. A.; Sebastian Monasor, L.; Schifferer, M.; Cantuti-Castelvetri, L.; König, J.; Vidatic, L.; Bremova-Ertl, T.; Hecimovic, S.; Simons, M.; Lichtenthaler, S. F.; Strupp, M.; Schneider, S. A.

10.1101/789511 — neuroscience — Posted on 2019-10-01

3884 Distinct molecular processes in placentae involved in two major subtypes of preeclampsia

Ren, Z.; Gao, Y.; Gao, Y.; Chen, Q.; Jiang, S.; Liang, G.; Yang, X.; Fan, C.; Wang, H.; Wang, J.; Shi, Y.-W.; Xiao, C.; Zhong, M.; Yu, Y.; Yang, X.

10.1101/787796 — genomics — Posted on 2019-10-01

3885 Mutual Information Reveals a 6 Base Pair Signal in Noncoding DNA

Dannemiller, J. L.

10.1101/786814 — genetics — Posted on 2019-10-01

3886 Predicting human prospective beliefs and decisions to engage attention using multivariate classification analyses of behavioural data

Mei, N.; Olafsson, E.; Rankine, S.; Soto, D.

10.1101/607069 — neuroscience — Posted on 2019-10-01

3887 CAP2 is a novel regulator of Cofilin in synaptic plasticity and Alzheimer’s disease

Pelucchi, S.; Vandermeulen, L.; Pizzamiglio, L.; Aksan, B.; Yan, J.; Konietzny, A.; Bonomi, E.; Borroni, B.; Rust, M. B.; Di Marino, D.; Mikhaylova, M.; Mauceri, D.; Antonucci, F.; Gardoni, F.; Di Luca, M.; Marcello, E.

10.1101/789552 — neuroscience — Posted on 2019-10-01

3888 Information-based taste maps in insular cortex are shaped by stimulus concentration

Porcu, E.; Benz, K. M.; Ball, F.; Tempelmann, C.; Hanke, M.; Noesselt, T.

10.1101/774687 — neuroscience — Posted on 2019-10-01

3889 Cell-specific targeting by Clostridium perfringens β-toxin unraveled: the role of CD31 as the toxin receptor.

Bruggisser, J.; Tarek, B.; Wyder, M.; Witz, G.; Enzmann, G.; Deutsch, U.; Engelhardt, B.; Posthaus, H.

10.1101/787242 — molecular biology — Posted on 2019-10-01

3890 Weak Acid Sensitive A, a novel transcription factor required for regulation of weak-acid resistance and spore-spore heterogeneity in Aspergillus niger

Geoghegan, I. A.; Stratford, M.; Bromley, M.; Archer, D. B.; Avery, S. V.

10.1101/788141 — microbiology — Posted on 2019-10-01

3891 Success of Escherichia coli O25b:H4 ST131 clade C associated with a decrease in virulence

Duprilot, M.; Baron, A.; Blanquart, F.; Dion, S.; Letteron, P.; Flament-Simon, S.-C.; Clermont, O.; Denamur, E.; Nicolas-Chanoine, M.-H.

10.1101/786350 — microbiology — Posted on 2019-10-01

3892 Natural IgE promotes epithelial hyperplasia and inflammation-driven tumour growth

Hayes, M. D.; Ward, S.; Crawford, G.; Seoane, R. C.; Jackson, W. D.; Kipling, D.; Voehringer, D.; Dunn-Walters, D.; Strid, J.

10.1101/782805 — immunology — Posted on 2019-10-01

3893 A sheath of motile cells supports collective migration of the Zebrafish posterior lateral line primordium under the skin

Dalle Nogare, D.; Natesh, N.; Chitnis, A.

10.1101/783043 — cell biology — Posted on 2019-10-01

3894 Cell density-dependent ferroptosis in breast cancer is induced by accumulation of polyunsaturated fatty acid-enriched triacylglycerides

Panzilius, E.; Holstein, F.; Dehairs, J.; Planque, M.; von Toerne, C.; Koenig, A.-C.; Doll, S.; Bannier-Helaouët, M.; Ganz, H. M.; Hauck, S. M.; Talebi, A.; Swinnen, J. V.; Fendt, S.-M.; Friedmann Angeli, J. P.; Conrad, M.; Scheel, C. H.

10.1101/417949 — cancer biology — Posted on 2019-10-01

3895 A Structurally-Validated Multiple Sequence Alignment of 497 Human Protein Kinase Domains

Modi, V.; Dunbrack, R.

10.1101/776740 — bioinformatics — Posted on 2019-10-01

3896 Effects of DCM leaf Extract of Gnidia glauca (Fresen) on Locomotor Activity, Anxiety and Exploration-Like Behaviors in High Fat Diet-Induced Obese Rats

Arika, W. M.; Kibiti, C. M.; Njagi, J. M.; Ngugi, M. P.

10.1101/786103 — animal behavior and cognition — Posted on 2019-10-01

3897 Higher Temperatures Generically Favor Slower-Growing Bacterial Species in Multispecies Communities

Lax, S.; Abreu, C. I.; Gore, J.

10.1101/689380 — ecology — Posted on 2019-10-01

3898 Peroxiredoxin promotes longevity and H2O2-resistance in yeast through redox-modulation of PKA

Molin, M.; Roger, F.; Picazo, C.; Asami, C.; Reiter, W.; Hanzen, S.; Gao, C.; Lagniel, G.; Welkenhuysen, N.; Labarre, J.; Nyström, T.; Grotli, M.; Hartl, M.

10.1101/676270 — biochemistry — Posted on 2019-10-01

3899 Hippocampal subfields and limbic white matter jointly predict learning rate in older adults

Bender, A. R.; Brandmaier, A. M.; Düzel, S.; Keresztes, A.; Pasternak, O.; Lindenberger, U.; Kühn, S.

10.1101/661702 — neuroscience — Posted on 2019-10-01

3900 Two classes of chromatin domains are important for fidelity of human centromeres

Melters, D. P.; Rakshit, T.; Bui, M.; Grigoryev, S. A.; Sturgill, D.; Dalal, Y.

10.1101/604223 — biochemistry — Posted on 2019-10-01

3901 Microvasculopathy And Soft Tissue Calcification In Mice Are Governed by Fetuin-A, Pyrophosphate And Magnesium

Babler, A.; Schmitz, C.; Buescher, A.; Herrmann, M.; Gremse, F.; Gorgels, T. G.; Floege, J.; Jahnen-Dechent, W.

10.1101/577239 — physiology — Posted on 2019-10-01

3902 The genome of the blind soil-dwelling and ancestrally wingless dipluran Campodea augens, a key reference hexapod for studying the emergence of insect innovations

Manni, M.; Simao, F. A.; Robertson, H. M.; Gabaglio, M. A.; Waterhouse, R. M.; Misof, B.; Niehuis, O.; Szucsich, N. U.; Zdobnov, E. M.

10.1101/585695 — genomics — Posted on 2019-10-01

3903 hilldiv: an R package for the integral analysis of diversity based on Hill numbers

Alberdi, A.; Gilbert, M. T. P.

10.1101/545665 — ecology — Posted on 2019-10-01

3904 Multiple Kinesins Induce Tension for Smooth Cargo Transport

Tjioe, M.; Shukla, S.; Vaidya, R. M.; Troitskaia, A.; Bookwalter, C.; Trybus, K. M.; Chemla, Y. R.; Selvin, P. R.

10.1101/544080 — biophysics — Posted on 2019-10-01

3905 Ergodicity analysis and antithetic integral control of a class of stochastic reaction networks with delays

Briat, C.; Khammash, M.

10.1101/481085 — systems biology — Posted on 2019-10-01

3906 The actin binding protein α-adducin modulates desmosomal turnover and plasticity

Hiermaier, M.; Kliewe, F.; Schinner, C.; Stüdle, C.; Maly, I. P.; Wanuske, M.-T.; Rötzer, V.; Endlich, N.; Vielmuth, F.; Waschke, J.; Spindler, V.

10.1101/787846 — cell biology — Posted on 2019-10-01

3907 Targeting the PI3K/AKT pathway overcomes enzalutamide resistance by inhibiting induction of the glucocorticoid receptor

Adelaiye-Ogala, R. M.; Gryder, B.; Nguyen, Y. T. M.; Alilin, A. N.; Grayson, A.; Jansson, K. H.; Beshiri, M. L.; Agarwal, S.; Capaldo, B.; Rodriguez-Nieves, J. A.; Kelly, K.; VanderWeele, D. J.

10.1101/783803 — cancer biology — Posted on 2019-10-01

3908 Fast searches of large collections of single cell data using scfind

Lee, J. T. H.; Patikas, N.; Kiselev, V. Y.; Hemberg, M.

10.1101/788596 — bioinformatics — Posted on 2019-10-01

3909 Beat-based and memory-based temporal expectations in rhythm: similar perceptual effects, different underlying mechanisms

Bouwer, F. L.; Honing, H.; Slagter, H. A.

10.1101/613398 — neuroscience — Posted on 2019-10-01

3910 Sex and pubertal status influence dendritic spine density onto frontal corticostriatal projection neurons

Delevich, K.; Okada, N. J.; Rahane, A.; Zhang, Z.; Hall, C. D.; Wilbrecht, L.

10.1101/787408 — neuroscience — Posted on 2019-10-01

3911 Genome-resolved viral and cellular metagenomes revealed potential key virus-host interactions in a deep freshwater lake

Okazaki, Y.; Nishimura, Y.; Yoshida, T.; Ogata, H.; Nakano, S.-i.

10.1101/655167 — microbiology — Posted on 2019-10-01

3912 Large single-locus effects for maturation timing are mediated via condition variation in Atlantic salmon

Debes, P. V.; Piavchenko, N.; Ruokolainen, A.; Ovaskainen, O.; Moustakas-Verho, J. E.; Parre, N.; Aykanat, T.; Erkinaro, J.; Primmer, C. R.

10.1101/780437 — evolutionary biology — Posted on 2019-10-01

3913 Revisiting biogeography of livestock animal domestication

Zliobaite, I.

10.1101/786442 — ecology — Posted on 2019-10-01

3914 Loss of Nance-Horan Syndrome b (nhsb) prevents expansion growth of retinal progenitor cells by selective up-regulation of Δ113p53

Vorster, P. J.; Ojumu, J.; Dickinson, A. J. G.; Walsh, G. S.

10.1101/775171 — developmental biology — Posted on 2019-10-01

3915 Fast targeting of antigen and surface-derived MHCII into degradative compartments implies endosomal prewiring for antigen presentation in B cells.

Hernandez-Perez, S.; Vainio, M.; Kuokkanen, E.; Sustar, V.; Rajala, J.; Paavola, V.; Petrov, P.; Awoniyi, L.; Sarapulov, A.; Forsten, S.; Vihinen, H.; Jokitalo, E.; Bruckbauer, A.; Mattila, P.