bioRxiv directory

1 PROTEIN-CODING VARIANTS IMPLICATE NOVEL GENES RELATED TO LIPID HOMEOSTASIS CONTRIBUTING TO BODY FAT DISTRIBUTION

Justice, A. E.; Karaderi, T.; Highland, H. M.; Young, K. L.; Graff, M.; Lu, Y.; Turcot, V.; Auer, P. L.; Fine, R. S.; Guo, X.; Schurmann, C.; Lempradl, A.; Marouli, E.; Mahajan, A.; Winkler, T. W.; Locke, A. E.; Medina-Gomez, C.; Esko, T.; Vedantam, S.; Giri, A.; Lo, K. S.; Alfred, T.; Mudgal, P.; Ng, M. C.; Heard-Costa, N. C.; Feitosa, M. F.; Manning, A. K.; Willems, S. M.; Sivapalaratnam, S.; Abecasis, G.; Alam, D. S.; Allison, M.; Amouyel, P.; Arzumanyan, Z.; Balkau, B.; Bastarache, L.; Bergmann, S.; Bielak, L. F.; Blüher, M.; Boehnke, M.; Boeing, H.; Boerwinkle, E.; Böger,

10.1101/352674 — genetics — Posted on 2018-06-30

2 The C. elegans AWA Olfactory Neuron Fires Calcium-Mediated All-or-None Action Potentials

Liu, Q.; Kidd, P. B.; Dobosiewicz, M.; Bargmann, C.

10.1101/359935 — neuroscience — Posted on 2018-06-30

3 Effect of chronic stimulation and stimulus level on temporal processing by cochlear implant listeners

Carlyon, R. P.; Guerit, F.; Billig, A. J.; Tam, Y. C.; Harris, F.; Deeks, J. M.

10.1101/359869 — neuroscience — Posted on 2018-06-30

4 Reduced gray matter volume in the orbitofrontal cortex is associated with greater body mass index: a coordinate-based meta-analysis.

Chen, E. Y.; Murray, S. M.; Giovannetti, T.; Smith, D. V.

10.1101/359919 — neuroscience — Posted on 2018-06-30

5 Calcium-dependent reactive oxygen formation and blood-brain barrier breakdown by NOX5 limits post-reperfusion outcome in stroke

Casas, A. I.; Kleikers, P. W.; Geuss, E.; Langhauser, F.; Egea, J.; Lopez, M. G.; Kleinschnitz, C.; Schmidt, H. H.

10.1101/359893 — neuroscience — Posted on 2018-06-30

6 Optimizing guide RNA selection and CRISPR/Cas9 methodology for efficient generation of deletions in C. elegans.

Moerman, D.; Au, V.; Li-Leger, E.; Raymant, G.; Flibotte, S.; Chen, G.; Martin, K.; Fernando, L.; Doell, C.; Rosell, F.; Wang, S.; Edgley, M.; Rougvie, A.; Hutter, H.

10.1101/359588 — genetics — Posted on 2018-06-30

7 Hydrodynamic trapping measures the interaction between membrane-associated molecules

Junghans, V.; Hladilkova, J.; Santos, A. M.; Lund, M.; Davis, S. J.; Jonsson, P.

10.1101/357277 — biophysics — Posted on 2018-06-30

8 Statistical Inference Relief (STIR) feature selection

Le, T. T.; Urbanowicz, R. J.; Moore, J. H.; McKinney, B. A.

10.1101/359224 — bioinformatics — Posted on 2018-06-30

9 Hematological and Serum Biochemical Analysis of Streptozotocin-Induced Insulin Dependent Diabetes Mellitus in Male Adult Wistar Rats

Yakhchalian, N.

10.1101/359844 — pharmacology and toxicology — Posted on 2018-06-30

10 Multiplexed single-cell RNA-seq via transient barcoding for drug screening

Shin, D.; Lee, W.; Lee, J. H.; Bang, D.

10.1101/359851 — genomics — Posted on 2018-06-30

11 Thyroid hormone signaling specifies cone subtypes in human retinal organoids

Eldred, K. C.; Hadyniak, S. E.; Hussey, K. A.; Brennerman, B.; Zhang, P.; Chamling, X.; Sluch, V. M.; Welsbie, D. S.; Hattar, S.; Taylor, J.; Wahlin, K.; Zack, D. J.; Johnston, R. J.

10.1101/359950 — developmental biology — Posted on 2018-06-30

12 Quantification of nuclear protein dynamics reveals chromatin remodeling during acute protein degradation

Federation, A. J.; Nandakumar, V.; Wang, H.; Searle, B.; Pino, L.; Merrihew, G.; Ting, Y. S.; Howard, N.; Kutyavin, T.; MacCoss, M. J.; Stamatoyannopoulos, J. A.

10.1101/345686 — systems biology — Posted on 2018-06-30

13 The transfer function of the rhesus macaque oculomotor system for small-amplitude slow motion trajectories

Skinner, J.; Buonocore, A.; Hafed, Z.

10.1101/359836 — neuroscience — Posted on 2018-06-30

14 Defining Hepatic Modifiers Of ATTR Amyloidosis Through Therapeutic Gene Editing In Patient iPSCs

Giadone, R. M.; Liberti, D. C.; Matte, T. M.; Skvir, N.; Chen, K.-C.; Jean, J.-C.; Wilson, A. A.; Kotton, D. N.; Wiseman, R. L.; Murphy, G. J.

10.1101/358515 — cell biology — Posted on 2018-06-30

15 Multidimensional transcriptomics provides detailed information about immune cell distribution and identity in HER2+ breast tumors

Salmen, F.; Vickovic, S.; Larsson, L.; Stenbeck, L.; Vallon-Christersson, J.; Ehinger, A.; Hakkinen, J.; Borg, A.; Frisen, J.; Stahl, P.; Lundeberg, J.

10.1101/358937 — cancer biology — Posted on 2018-06-30

16 Acute-stress impairs cytoprotective mechanisms through neural inhibition of the insulin pathway

De Rosa, M. J.; Veuthey, T.; Florman, J.; Grant, J.; Blanco, G.; Andersen, N.; Donnelly, J.; Rayes, D.; Alkema, M.

10.1101/294645 — neuroscience — Posted on 2018-06-30

17 An Indexing Theory for Working Memory based on Fast Hebbian Plasticity

Fiebig, F.; Herman, P.; Lansner, A.

10.1101/334821 — neuroscience — Posted on 2018-06-30

18 Analysis of differentially methylated regions in primates and non-primates provides support for the evolutionary hypothesis of schizophrenia

Banerjee, N.; Polushina, T.; Bettella, F.; Steen, V. M.; Andreassen, O. A.; Hellard, S. L.

10.1101/322693 — genomics — Posted on 2018-06-30

19 Highly diverged novel subunit composition of apicomplexan F-type ATP synthase identified from Toxoplasma gondii

Salunke, R.; Mourier, T.; Banerjee, M.; Pain, A.; Shanmugam, D.

10.1101/321620 — biochemistry — Posted on 2018-06-30

20 Data-driven analysis of motor activity implicates 5-HT2A neurons in backward locomotion of larval Drosophila

Park, J.; Kondo, S.; Tanimoto, H.; Kohsaka, H.; Nose, A.

10.1101/257568 — neuroscience — Posted on 2018-06-30

21 Early Holocene Morphological Variation in Hunter-Gatherer Hands and Feet

Hoover, K. C.; Berbesque, J. C.

10.1101/271460 — evolutionary biology — Posted on 2018-06-30

22 Discovery of biased orientation of human DNA motif sequences affecting enhancer-promoter interactions and transcription of genes

Osato, N.

10.1101/290825 — bioinformatics — Posted on 2018-06-30

23 Altered hsrω lncRNA levels in activated Ras background further enhance Ras activity in Drosophila eye and induces more R7 photoreceptors

Ray, M.; Lakhotia, S. C.

10.1101/224543 — cell biology — Posted on 2018-06-30

24 Novel exc Genes Involved in Formation of the Tubular Excretory Canals of C. elegans

Al-Hashimi, H.; Chiarelli, T.; Lundquist, E. A.; Buechner, M.

10.1101/359653 — developmental biology — Posted on 2018-06-30

25 Bearing the brunt: Mongolian khulan (Equus hemionus hemionus) are exposed to multiple influenza A strains

Soilemetzidou, E. S.; de Bruin, E.; Czirjak, G. A.; Bayarbaatar, B.; Kaczensky, P.; Koopmans, M.; Walzer, C.; Greenwood, A. D.

10.1101/357905 — epidemiology — Posted on 2018-06-30

26 Human salivary amylase gene copy number impacts oral and gut microbiomes

Poole, A. C.; Goodrich, J. K.; Youngblut, N. D.; Luque, G. G.; Ruaud, A.; Sutter, J. L.; Waters, J. L.; Shi, Q.; El-Hadidi, M.; Johnson, L. M.; Bar, H. Y.; Huson, D. H.; Booth, J. G.; Ley, R. E.

10.1101/359737 — genetics — Posted on 2018-06-30

27 The impact of behavioral interventions on co-infectiondynamics: an exploration of the effects of home isolation

Hendrickx, D. M.; Abrams, S.; Hens, N.

10.1101/358093 — epidemiology — Posted on 2018-06-30

28 Proxi: a Python package for proximity network inference from metagenomic data

El-Manzalawy, Y.

10.1101/357764 — systems biology — Posted on 2018-06-30

29 Impact of Premorbid Infection on Onset and Disease Activity of Rheumatoid Arthritis

Zhang, R.; Jing, L.; Jiali, C.; Xiaomei, C.; Xue, L.; Chun, L.; Yuan, J.; Yunshan, Z.; Limin, R.; Lijun, L.; Jing, H.; Lijun, L.

10.1101/358853 — epidemiology — Posted on 2018-06-30

30 Anopheles Mosquitoes May Drive Invasion and Transmission of Mayaro Virus across Geographically Diverse Regions

Brustolin, M.; Pujhari, S.; Henderson, C. A.; Rasgon, J. L.

10.1101/359349 — epidemiology — Posted on 2018-06-30

31 Transcriptome analysis of differential gene expression in Dichomitus squalens during interspecific mycelial interactions and the potential link with laccase induction

Luo, F.; Zhong, Z. X.; Li, N. N.; He, B. H.; Igarashi, Y.

10.1101/359646 — bioinformatics — Posted on 2018-06-30

32 Comparative Biochemical and Structural Analysis of Novel Cellulose Binding Proteins (Tapirins) from Extremely Thermophilic Caldicellulosiruptor Species

Lee, L. L.; Hart, W. S.; Lunin, V. V.; Alahuhta, M.; Bomble, Y. J.; Himmel, M. E.; Blumer-Schuette, S. E.; Adams, M. W. W.; Kelly, R. M.

10.1101/359786 — microbiology — Posted on 2018-06-30

33 Dynamic expression of Id3 defines the stepwise differentiation of tissue-resident regulatory T cells

Sullivan, J. M.; Hollbacher, B.; Campbell, D.

10.1101/359687 — immunology — Posted on 2018-06-30

34 Clinico-Demographic trend of HIV-positive cases and sero-discordance at a secondary level hospital in Haryana, North India- programmatic implications for a low HIV prevalence State.

Haldar, P.; Kant, S.

10.1101/356881 — epidemiology — Posted on 2018-06-30

35 Temporal Gene Coexpression Network Analysis Using A Low-rank plus Sparse Framework

Li, J.; Lai, Y.; Zhang, C.; Zhang, Q.

10.1101/359612 — bioinformatics — Posted on 2018-06-30

36 The transfer function of the rhesus macaque oculomotor system for small-amplitude slow motion trajectories

Skinner, J.; Buonocore, A.; Hafed, Z.

10.1101/359836 — neuroscience — Posted on 2018-06-30

37 Cortical responses to natural speech reflect probabilistic phonotactics

Di Liberto, G. M.; Wong, D.; Melnik, G. A.; de Cheveigne, A.

10.1101/359828 — neuroscience — Posted on 2018-06-30

38 Proficiency of WHO Global Foodborne Infections Network External Quality Assurance System participants in the identification and susceptibility testing of thermo-tolerant Campylobacter spp. from 2003-2012.

Pedersen, S. K.; Wagenaar, J. A.; Vigre, H.; Roer, L.; Mikoleit, M.; Cawthorne, A. L.; Aarestrup, F. M.; Hendriksen, R. S.

10.1101/359794 — microbiology — Posted on 2018-06-30

39 Mutation-driven evolution of Pseudomonas aeruginosa in the presence of either ceftazidime or ceftazidime/avibactam

Sanz-Garcia, F.; Hernando-Amado, S.; Martinez, J. L.

10.1101/359802 — microbiology — Posted on 2018-06-30

40 Beyond type 1 regulatory T cells: co-expression of LAG3 and CD49b in IL-10-producing T cell lineages

Huang, W.; Solouki, S.; Carter, C.; Zheng, S.-G.; August, A.

10.1101/359547 — immunology — Posted on 2018-06-30

41 Comparative Proteogenomic Analysis of Right-sided Colon Cancer, Left-sided Colon Cancer and Rectal Cancers Reveal Distinct Mutational Profiles.

Imperial, R.; Ahmed, z.; Toor, O. M.; Erdogan, c.; Khaliq, A.; case, P.; Case, J.; Kennedy, K.; Cummings, L. S.; Melton, N.; Raza, S.; Diri, B.; Mohammad, R.; El-Rayes, B.; Pluard, T.; Hussain, A.; Subramanian, J.; Masood, A.

10.1101/359679 — genomics — Posted on 2018-06-30

42 Major evolutionary transitions as Bayesian structure learning

Czegel, D.; Zachar, I.; Szathmary, E.

10.1101/359596 — evolutionary biology — Posted on 2018-06-30

43 Identification of circulating protein biomarkers for pancreatic cancer cachexia

Shahda, S.; Narasimhan, A.; Kays, J.; Perkins, S. M.; Cheng, L.; Hannaford, K. N.; Schloss, D. E. I.; Koniaris, L. G.; Zimmers, T. A.

10.1101/359661 — cancer biology — Posted on 2018-06-30

44 Free-running enzymatic oligonucleotide synthesis for data storage applications

Jensen, M. A.; Griffin, P.; Davis, R. W.

10.1101/355719 — biochemistry — Posted on 2018-06-30

45 Deconvolution of substrate processing by the 26S proteasome reveals a selective kinetic gateway to degradation

Bard, J. A.; Bashore, C.; Dong, K. C.; Martin, A.

10.1101/359695 — biochemistry — Posted on 2018-06-30

46 Genome-wide association analysis with a 50K transcribed gene SNP-chip identifies QTL affecting muscle yield in rainbow trout

Salem, M.; Al-Tobasei, R.; Ali, A.; Lourenco, D.; Gao, G.; Palti, Y.; Kenney, B.; Leeds, T.

10.1101/355792 — genomics — Posted on 2018-06-30

47 Cheminformatics tools for analyzing and designing optimized small molecule libraries

Moret, N.; Clark, N.; Hafner, M.; Wang, Y.; Lounkine, E.; Medvedovic, M.; Wang, J.; Gray, N.; Jenkins, J.; Sorger, P.

10.1101/358978 — systems biology — Posted on 2018-06-29

48 Contributions of Low- and High-Frequency Sensorineural Hearing Deficits to Speech Intelligibility in Noise

Verhulst, S.; Warzybok, A.

10.1101/358127 — neuroscience — Posted on 2018-06-29

49 Chicken uric acid elimination via the uric acid transporters BCRP and MRP4 in the liver, kidneys, and intestines

Ding, X.; Wu, J.; Li, M.; Qian, S.; Ma, Y.; Fang, T.; Li, X.; Liu, H.; Feng, S.; Li, Y.; Wang, X.; Li, J.

10.1101/358994 — physiology — Posted on 2018-06-29

50 Neural tracking of the speech envelope in cochlear implant users

Somers, B.; Verschueren, E.; Francart, T.

10.1101/359299 — neuroscience — Posted on 2018-06-29

51 FtsW is a peptidoglycan polymerase that is activated by its cognate penicillin-binding protein

Taguchi, A.; Welsh, M. A.; Marmont, L. S.; Lee, W.; Kahne, D.; Bernhardt, T. G.; Walker, S.

10.1101/358663 — microbiology — Posted on 2018-06-29

52 The Therapeutic Antibody Profiler (TAP): Five Computational Developability Guidelines

Raybould, M.; Marks, C.; Krawczyk, K.; Taddese, B.; Nowak, J.; Lewis, A. P.; Bujotzek, A.; Shi, J.; Deane, C. M.

10.1101/359141 — immunology — Posted on 2018-06-29

53 TCR/ITK signaling via mTOR tunes CD8+ T cell homeostatic proliferation, metabolism, and anti-tumor effector function

Huang, W.; Luo, J.; August, A.

10.1101/359604 — immunology — Posted on 2018-06-29

54 Effector Gene Reshuffling Involves Dispensable Mini-chromosomes in the Wheat Blast Fungus

Peng, Z.; Oliveira-Garcia, E.; Lin, G.; Hu, Y.; Dalby, M.; Migeon, P.; Tang, H.; Farman, M.; Cook, D.; White, F. F.; Valent, B.; Liu, S.

10.1101/359455 — genomics — Posted on 2018-06-29

55 Low MSH2 protein levels identify muscle-invasive bladder cancer resistant to cisplatin

Goodspeed, A.; Jean, A.; Costello, J. C.

10.1101/359554 — cancer biology — Posted on 2018-06-29

Pfurtscheller, G.; Schwerdtfeger, A.; Fink, D.; Brunner, C.; Aigner, C. S.; Brito, J.; Andrade, A.

10.1101/359000 — neuroscience — Posted on 2018-06-29

57 Visual signals suppress Alpha Power Increases & Frequency Decreases before and after a Mindfulness Meditation Intervention for Problem Gambling

Martin, K.-L.; Jindani, F.; Turner, N. E.; DeSouza, J. F.

10.1101/359257 — neuroscience — Posted on 2018-06-29

58 Neurobiological Basis of Brain Blood Oxygenation Responses Correlated with Cognitive Stroop Task Performance Before and After an Acute Bout of Aerobic Exercise

Pal, A.

10.1101/359307 — neuroscience — Posted on 2018-06-29

59 Computational Luminance Constancy from Naturalistic Images

Singh, V.; Cottaris, N. P.; Heasly, B. S.; Brainard, D. H.; Burge, J.

10.1101/358671 — neuroscience — Posted on 2018-06-29

60 Human-level saccade detection performance using deep neural networks

Bellet, M. E.; Bellet, J.; Nienborg, H.; Hafed, Z. M.; Berens, P.

10.1101/359018 — neuroscience — Posted on 2018-06-29

61 Neurofeedback helps to reveal a relationship between context reinstatement and memory retrieval

deBettencourt, M. T.; Turk-Browne, N. B.; Norman, K. A.

10.1101/355727 — neuroscience — Posted on 2018-06-29

62 Nucleic acid extraction and sequencing from low-biomass synthetic Mars analog soils for in situ life detection

Mojarro, A.; Hachey, J.; Bailey, R.; Brown, M.; Doebler, R.; Ruvkun, G.; Zuber, M. T.; Carr, C. E.

10.1101/358218 — molecular biology — Posted on 2018-06-29

63 An activation pathway governs cell wall polymerization by a bacterial morphogenic machine

Rohs, P. A.; Buss, J.; Sim, S.; Squyres, G.; Srisuknimit, V.; Smith, M.; Cho, H.; Sjodt, M.; Kruse, A. C.; Garner, E.; Walker, S.; Kahne, D.; Bernhardt, T. G.

10.1101/359208 — microbiology — Posted on 2018-06-29

64 Visualization of the type III secretion mediated Salmonella-host cell interface using cryo-electron tomography

Liu, J.; Park, D.; Lara-Tejero, M.; Galan, J. E.; Li, W.; Waxham, M. N.; Hu, B.

10.1101/359166 — microbiology — Posted on 2018-06-29

65 SummaryAUC: a tool for evaluating the performance of polygenic risk prediction models in validation datasets with only summary level statistics

Song, L.; Liu, A.; Shi, J.

10.1101/359463 — bioinformatics — Posted on 2018-06-29

66 In situ transcriptome characteristics are lost following culture adaptation of adult cardiac stem cells

Kim, T.; Echeagaray, O. H.; Wang, B. J.; Casillas, A.; Broughton, K. M.; Kim, B.-H.; Sussman, M. A.

10.1101/359497 — bioinformatics — Posted on 2018-06-29

67 Orexin-1 receptor signaling in ventral pallidum mediates demand for the opioid remifentanil

Mohammdkhani, A.; Pantazis, C. B.; Bowrey, H. E.; James, M. H.; Aston-Jones, G.

10.1101/353896 — animal behavior and cognition — Posted on 2018-06-29

68 Efficient Synthesis of Mutants Using Genetic Crosses

Pratapa, A.; Jalihal, A. P.; Sekharipuram, R. S.; Murali, T. M.

10.1101/359281 — systems biology — Posted on 2018-06-29

69 A biologically driven directional change in susceptibility to global-scale glaciation during the Precambrian-Cambrian transition

Boyle, R.; Loscher, C.

10.1101/359422 — paleontology — Posted on 2018-06-29

70 A quantitative framework for motion visibility in human cortex

Birman, D.; Gardner, J. L.

10.1101/359562 — neuroscience — Posted on 2018-06-29

71 Seizures start as silent microseizures by neuronal ensembles

Wenzel, M.; Hamm, J. P.; Peterka, D. S.; Yuste, R.

10.1101/358903 — neuroscience — Posted on 2018-06-29

72 Breakdown of spatial coding and neural synchronization in epilepsy

Shuman, T.; Aharoni, D.; Cai, D. J.; Lee, C. R.; Chavlis, S.; Taxidis, J.; Flores, S. E.; Cheng, K.; Javaherian, M.; Kaba, C. C.; Shtrahman, M.; Kakhurin, K. I.; Masmanidis, S.; Khakh, B. S.; Poirazi, P.; Silva, A. J.; Golshani, P.

10.1101/358580 — neuroscience — Posted on 2018-06-29

73 Heritability Estimation and Differential Analysis with Generalized Linear Mixed Models in Genomic Sequencing Studies

Sun, S.; Zhu, J.; Mozaffari, S.; Ober, C.; Chen, M.; Zhou, X.

10.1101/359265 — genomics — Posted on 2018-06-29

74 Peculiar features of the plastids of the colourless alga Euglena longa and photosynthetic euglenophytes unveiled by transcriptome analyses

Zahonova, K.; Fussy, Z.; Bircak, E.; Novak Vanclova, A. M. G.; Klimes, V.; Vesteg, M.; Krajcovic, J.; Obornik, M.; Elias, M.

10.1101/358895 — evolutionary biology — Posted on 2018-06-29

75 Putting a New Spin of G4 Structure and Binding by Analytical Ultracentrifugation

Dean, W. L.; Gray, R. D.; Monsen, R. C.; DeLeeuw, L.; Chaires, J. B.

10.1101/359356 — biophysics — Posted on 2018-06-29

76 Performance Assessment of Variant Calling Pipelines using Human Whole Exome Sequencing and Simulated data

Kumaran, M.; Subramanian, U.; Devarajan, B.

10.1101/359109 — bioinformatics — Posted on 2018-06-29

77 BindSpace: decoding transcription factor binding signals by large-scale joint embedding

Yuan, H.; Kshirsagar, M.; Zamparo, L.; Lu, Y.; Leslie, C. S.

10.1101/359539 — bioinformatics — Posted on 2018-06-29

78 Structure probing data enhances RNA-RNA interaction prediction

Miladi, M.; Montaseri, S.; Backofen, R.; Raden, M.

10.1101/359323 — bioinformatics — Posted on 2018-06-29

79 Using LASSO in gene co-expression network for genome-wide identification of gene interactions responding to salt stress in rice

Du, Q.; Campbell, M.; Yu, H.; Liu, K.; Walia, H.; Zhang, Q.; Zhang, C.

10.1101/359364 — bioinformatics — Posted on 2018-06-29

80 A large-scale, standardized physiological survey reveals higher order coding throughout the mouse visual cortex

de Vries, S. E. J.; Lecoq, J.; Buice, M. A.; Groblewski, P. A.; Ocker, G. K.; Oliver, M.; Feng, D.; Cain, N.; Ledochowitsch, P.; Millman, D.; Roll, K.; Garrett, M.; Keenan, T.; Kuan, L.; Mihalas, S.; Olsen, S.; Thompson, C.; Wakeman, W.; Waters, J.; Williams, D.; Barber, C.; Berbesque, N.; Blanchard, B.; Bowles, N.; Caldejon, S.; Casal, L.; Cho, A.; Cross, S.; Dang, C.; Dolbeare, T.; Edwards, M.; Galbraith, J.; Gaudreault, N.; Griffin, F.; Hargrave, P.; Howard, R.; Huang, L.; Jewell, S.; Keller, N.; Knoblich, U.; Larkin, J.; Larsen, R.; Lau, C.; Lee, E.; Lee, F.; Leon, A.; Li, L.; Long, F.; Lu

10.1101/359513 — neuroscience — Posted on 2018-06-29

81 TEsmall identifies small RNAs associated with targeted inhibitor resistance in melanoma

O'Neill, K.; Liao, W.-W.; Patel, A.; Gale Hammell, M.

10.1101/359471 — genomics — Posted on 2018-06-29

82 A system for gene expression noise control in yeast

Mundt, M.; Anders, A.; Murray, S.; Sourjik, V.

10.1101/359042 — synthetic biology — Posted on 2018-06-29

83 Capturing auxin response factors syntax using DNA binding models

Stigliani, A.; Martin-Arevalillo, R.; Lucas, J.; Bessy, A.; Vinos-Poyo, T.; Mironova, V.; Vernoux, T.; Dumas, R.; Parcy, F.

10.1101/359182 — plant biology — Posted on 2018-06-29

84 Radiotherapy and cisplatin increase immunotherapy efficacy by enabling local and systemic intratumoral T-cell activity

Kroon, P.; Frijlink, E.; Iglesias-Guimarais, V.; Volkov, A.; van Buuren, M.; Schumacher, T. N.; Verheij, M.; Borst, J.; Verbrugge, I.

10.1101/357533 — cancer biology — Posted on 2018-06-29

85 Post-translational modifications drive protein stability to control the dynamic beer brewing proteome

Kerr, E. D.; Schulz, B. L.

10.1101/358796 — biochemistry — Posted on 2018-06-29

86 N-terminal phosphorylation of Huntingtin: A molecular switch for regulating Htt aggregation, helical conformation, internalization and nuclear targeting.

Deguire, S. M.; Ruggeri, F. S.; Fares, M.-B.; Chiki, A.; Cendrowska, U.; Dietler, G.; Lashuel, H. A.

10.1101/358234 — neuroscience — Posted on 2018-06-29

87 Multiple Functional Neurosteroid Binding Sites on GABAA Receptors

Chen, Z.-W.; Bracamontes, J. R.; Budelier, M. M.; Germann, A. L.; Shin, D. J.; Kathiresan, K.; Qian, M.-X.; Manion, B.; Cheng, W. W. L.; Reichert, D. E.; Akk, G.; Covey, D. F.; Evers, A. S.

10.1101/357574 — neuroscience — Posted on 2018-06-29

88 Non-enzymatic roles of human RAD51 at stalled replication forks

Mason, J.; Chan, Y.-L.; Weichselbaum, R. W.; Bishop, D. K.

10.1101/359380 — molecular biology — Posted on 2018-06-29

89 OTUB1 non-catalytically regulates the stability of the E2 ubiquitin conjugating enzyme UBE2E1

Pasupala, N.; Morrow, M. E.; Que, L. T.; Malynn, B. A.; Ma, A.; Wolberger, C.

10.1101/359414 — cell biology — Posted on 2018-06-29

90 Defining Hepatic Modifiers Of ATTR Amyloidosis Through Therapeutic Gene Editing In Patient iPSCs

Giadone, R. M.; Liberti, D. C.; Matte, T. M.; Skvir, N.; Chen, K.-C.; Jean, J.-C.; Wilson, A. A.; Kotton, D. N.; Wiseman, R. L.; Murphy, G. J.

10.1101/358515 — cell biology — Posted on 2018-06-29

91 DNMT1 in Six2 progenitor cells is essential for transposable element silencing and kidney development

Li, S.-Y.; Park, J.; Chung, K.; Shrestha, R.; Palmer, M. B.; Susztak, K.

10.1101/359448 — developmental biology — Posted on 2018-06-29

92 Development of a genetically encoded sensor for endogenous CaMKII activity

Ardestani, G.; West, M.; Maresca, T. J.; Fissore, R. A.; Stratton, M. M.

10.1101/359398 — biochemistry — Posted on 2018-06-29

93 Identification of different putative outer membrane electron conduits necessary for Fe(III) citrate, Fe(III) oxide, Mn(IV) oxide, or electrode reduction by Geobacter sulfurreducens

Jimenez Otero, F.; Chan, C. H.; Bond, D. R.

10.1101/169086 — microbiology — Posted on 2018-06-29

94 Evolutionary origin of disease and complexity: A nonequilibrium thermodynamic solution

Koch, L. G.; Britton, S. L.

10.1101/356493 — evolutionary biology — Posted on 2018-06-29

95 Reliability of Static and Dynamic Network Metrics in the Resting-State: A MEG-beamformed Connectivity Analysis

Dimitriadis, S. I.; Routley, B.; Linden, D. E.; Singh, K. D.

10.1101/358192 — neuroscience — Posted on 2018-06-29

96 Efficient coding of subjective value

Polania, R.; Woodford, M.; Ruff, C.

10.1101/358317 — neuroscience — Posted on 2018-06-29

97 Functional and genetic characterization of an incF-type multidrug resistance plasmid isolated from fresh spinach.

Ajayi, A. O.; Perry, B. J.; Yost, C. K.

10.1101/358887 — microbiology — Posted on 2018-06-29

98 Fast and Robust Deconvolution of Tumor Infiltrating Lymphocyte from Expression Profiles using Least Trimmed Squares

Hao, Y.; Yan, M.; Lei, Y. L.; Xie, Y.

10.1101/358366 — bioinformatics — Posted on 2018-06-29

99 Stress vulnerability promotes an alcohol prone phenotype in a preclinical model of sustained depression

Riga, D.; Schmitz, L. J.; van Mourik, Y.; Hoogendijk, W. J.; De Vries, T. J.; Smit, A. B.; Spijker, S.

10.1101/358606 — animal behavior and cognition — Posted on 2018-06-29

100 Identification and characterisation of serotonin signalling in the potato cyst nematode Globodera pallida reveals new targets for crop protection

Crisford, A.; Calahorro, F.; Ludlow, E.; Marvin, J.; Hibbard, J.; Lilley, C.; Kearn, J.; Keefe, F.; Harmer, R.; Urwin, P.; O'Connor, V.; Holden-Dye, L.

10.1101/358358 — pharmacology and toxicology — Posted on 2018-06-29

101 Capturing remote activation of epilepsy source?

Paraskevov, A.; Zendrikov, D.

10.1101/355255 — neuroscience — Posted on 2018-06-29

102 Differential Sustained and Transient Temporal Processing Across Visual Streams

Stigliani, A.; Jeska, B.; Grill-Spector, K.

10.1101/358473 — neuroscience — Posted on 2018-06-29

103 The Vibrio H-ring facilitates the outer membrane penetration of polar-sheathed flagellum

Liu, J.; Zhu, S.; Nishikino, T.; Kojima, S.; Homma, M.

10.1101/358820 — microbiology — Posted on 2018-06-29

104 A computational protocol to characterize elusive Candidate Phyla Radiation bacteria in oral environments using metagenomic data

Meng, P.; Lu, C.; Lou, X.; Zhang, Q.; Jia, P.; Yan, Z.; Lin, J.; Chen, F.

10.1101/358812 — bioinformatics — Posted on 2018-06-29

105 Demand elasticity predicts addiction endophenotypes and the therapeutic efficacy of an orexin/hypocretin-1 receptor antagonist in rats

James, M. H.; Bowrey, H. E.; Stopper, C. M.; Aston-Jones, G.

10.1101/356709 — neuroscience — Posted on 2018-06-29

106 Multimodal music perception engages motor prediction: a TMS study

Gordon, C. L.; Iacoboni, M.; Balasubramaniam, R.

10.1101/358507 — neuroscience — Posted on 2018-06-29

107 Insight into relationship between micro-consortia, nitrogen source and petroleum degradation at low temperature anaerobic condition

Yu, J.; Chen, C.; Liu, C.; Yu, D.; Chen, S.; Yuan, F.; Fu, Y.; Liu, Q.

10.1101/358838 — microbiology — Posted on 2018-06-29

108 Phage to the rescue: adjunct phage treatment enhances the effectiveness of low antibiotic dose against Staphylococcus aureus biofilms in vitro

Dickey, J. M.; Perrot, V.

10.1101/358879 — microbiology — Posted on 2018-06-29

109 Microbial coexistence through chemical-mediated interactions

Niehaus, L.; Boland, I.; Liu, M.; Chen, K.; Fu, D.; Henckel, C.; Chaung, K.; Espinoza Miranda, S.; Dyckman, S.; Crum, M.; Dedrick, S.; Shou, W.; Momeni, B.

10.1101/358481 — ecology — Posted on 2018-06-29

110 Improving peptide-spectrum matching by fragmentation prediction using Hidden Markov Models

Kirik, U.; Refsgaard, J. C.; Juhl Jensen, L.

10.1101/358283 — bioinformatics — Posted on 2018-06-29

111 A comparison of asymmetric before-after control impact (aBACI) and staircase experimental designs for testing the effectiveness of stream restoration

Loughin, T. M.; Bennett, S. N.; Bouwes, N. W.

10.1101/359406 — scientific communication and education — Posted on 2018-06-29

112 Cargo Transport Shapes the Spatial Organization of a Microbial Community

Shrivastava, A.; Patel, V.; Tang, Y.; Yost, S. C.; Dewhirst, F. E.; Berg, H. C.

10.1101/318600 — microbiology — Posted on 2018-06-29

113 Machine Learning in Multi-Omics Data to Assess Longitudinal Predictors of Glycaemic Trait Levels

Prelot, L.; Draisma, H.; Anasanti, M. D.; Balkhiyarova, Z.; Wielscher, M.; Yengo, L.; Sebert, S.; Ala-Korpela, M.; Froguel, P.; Jarvelin, M.-R.; Kaakinen, M.; Prokopenko, I.

10.1101/358390 — genomics — Posted on 2018-06-29

114 Anomalous diffusion in inverted variable-lengthscale fluorescence correlation spectroscopy

Fradin, C.; Stolle, M.

10.1101/359240 — biophysics — Posted on 2018-06-29

115 ClusterMap: Comparing analyses across multiple Single Cell RNA-Seq profiles

Gao, X.; Hu, D.; Gogol, M.; Li, H.

10.1101/331330 — bioinformatics — Posted on 2018-06-29

116 Imputation of Behavioral Candidate Gene Repeat Polymorphisms in 486,551 Publicly-Available UK Biobank Individuals.

Border, R.; Smolen, A.; Corley, R.; Stallings, M.; Brown, S.; Conger, R.; Derringer, J.; Donnellan, M. B.; Haberstick, B. C.; Hewitt, J.; Hopfer, C.; Krauter, K.; McQueen, M. B.; Wall, T. L.; Keller, M. C.; Evans, L.

10.1101/358267 — genetics — Posted on 2018-06-29

117 The effects on neutral variability of recurrent selective sweeps and background selection

Campos Parada, J. L.; Charlesworth, B.

10.1101/358309 — evolutionary biology — Posted on 2018-06-29

118 Evolution of salivary glue genes in Drosophila species

Da Lage, J.-L.; Thomas, G. W. C.; Bonneau, M.; Courtier-Orgogozo, V.

10.1101/359190 — evolutionary biology — Posted on 2018-06-29

119 Mouse Models of GNAO1-Associated Movement Disorder: Allele- and sex-specific differences in phenotypes

Feng, H.; Larrivee, C. L.; Demireva, E.; Xie, H.; Leipprandt, J.; Neubig, R. R.

10.1101/358614 — animal behavior and cognition — Posted on 2018-06-29

120 Proteogenomics of adenosine-to-inosine RNA editing in the fruit fly

Kuznetsova, K. G.; Kliuchnikova, A. A.; Ilina, I. Y.; Chernobrovkin, A. L.; Novikova, S. E.; Farafonova, T. E.; Karpov, D. S.; Ivanov, M. V.; Goncharov, A. O.; Voronko, O. E.; Nasaev, S. S.; Ilgisonis, E. V.; Zgoda, V. G.; Zubarev, R. A.; Gorshkov, M. V.; Moshkovskii, S. A.

10.1101/101949 — biochemistry — Posted on 2018-06-29

121 Stimulus-driven brain rhythms within the alpha band: The attentional-modulation conundrum

Keitel, C.; Keitel, A.; Benwell, C. S.; Daube, C.; Thut, G.; Gross, J.

10.1101/336941 — neuroscience — Posted on 2018-06-29

122 Tropomyosin 3.5 protects F-actin networks required for tissue biomechanical properties

Cheng, C.; Nowak, R. B.; Amadeo, M. B.; Biswas, S. K.; Lo, W.-K.; Fowler, V. M.

10.1101/357509 — cell biology — Posted on 2018-06-29

123 Modeling of DNA replication in rapidly growing bacteria with one and two replication origins

Retkute, R.; Hawkins, M.; Rudolph, C. J.; Nieduszynski, C. A.

10.1101/354654 — systems biology — Posted on 2018-06-29

124 Generative adversarial networks for reconstructing natural images from brain activity

Seeliger, K.; Güclü, U.; Ambrogioni, L.; Güclütürk, Y.; van Gerven, M. A. J.

10.1101/226688 — neuroscience — Posted on 2018-06-29

125 Inhibitory and excitatory populations in parietal cortex are equally selective for decision outcome in both novices and experts

Najafi, F.; Elsayed, G. F.; Pnevmatikakis, E.; Cunningham, J.; Churchland, A. K.

10.1101/354340 — neuroscience — Posted on 2018-06-29

126 Development and analytical validation of an enzyme-linked immunosorbent assay based on baculovirus recombinant LipL32 protein antigen for the accurate detection of canine leptospirosis

Monge-Navarro, F. J.; Orozco-Cabrera, C.; Lopez-Valencia, G.; Cueto-Gonzalez, S. A.; Guerrero-Velazquez, J. G.; Moreno-Torres, K.; Espinoza-Blandon, K. O.; Castro-Del Campo, N.; Gaxiola-Machado, S. M.; Gomez-Gomez, S. D.; Trasvina-Munoz, E.; Torres-Guzman, C.

10.1101/358861 — developmental biology — Posted on 2018-06-29

127 The interaction of p130Cas with PKN3 promotes malignant growth

Gemperle, J.; Dibus, M.; Koudelkova, L.; Rosel, D.; Brabek, J.

10.1101/334425 — cancer biology — Posted on 2018-06-29

128 The evolution of a beneficial association between an animal and a microbial community

Rebar, D.; Leggett, H. C.; Aspinall, S. M. L.; Duarte, A.; Kilner, R. M.

10.1101/357657 — animal behavior and cognition — Posted on 2018-06-29

129 Fundamental Differences: A Basis Set for Characterizing Inter-Individual Variation in Resting State Connectomes

Sripada, C.; Angstadt, M.; Rutherford, S.; Kessler, D.; Kim, Y.; Yee, M.; Levina, L.

10.1101/326082 — neuroscience — Posted on 2018-06-29

130 Measurement of infection efficiency of a major wheat pathogen using time-resolved imaging of disease progress

Karisto, P.; Dora, S.; Mikaberidze, A.

10.1101/318204 — epidemiology — Posted on 2018-06-29

131 The Origins and Consequences of Localized and Global Somatic Hypermutation

Yousif, F.; Prokopec, S.; Sun, R. X.; Fan, F.; Lalansingh, C. M.; Drysdale, E.; Park, D. H.; Szyca, L.; PCAWG Network, ; Boutros, P. C.

10.1101/287839 — cancer biology — Posted on 2018-06-29

132 A Hidden Markov Model to Estimate the Time Dairy Cows Spend in Feeder Based on Indoor Positioning Data

Pastell, M.; Frondelius, L.

10.1101/250092 — animal behavior and cognition — Posted on 2018-06-29

133 NudCL2 is an Hsp90 cochaperone to regulate sister chromatid cohesion by stabilizing cohesin subunits

Yang, Y.; Wang, W.; Li, M.; Zhang, W.; Huang, Y.; Gao, Y.; Zhuo, W.; Yan, X.; Liu, W.; Wang, F.; Chen, D.; Zhou, T.

10.1101/358911 — cell biology — Posted on 2018-06-29

134 Cryo-EM structure of an amyloid fibril from systemic amyloidosis

Liberta, F.; Loerch, S.; Rennegarbe, M.; Schierhorn, A.; Westermark, P.; Westermark, G. T.; Grigorieff, N.; Fandrich, M.; Schmidt, M.

10.1101/357129 — biophysics — Posted on 2018-06-29

135 Genome-wide association studies of brain structure and function in the UK Biobank

Elliott, L.; Sharp, K.; Alfaro-Almagro, F.; Shi, S.; Miller, K.; Douaud, G.; Marchini, J.; Smith, S.

10.1101/178806 — genetics — Posted on 2018-06-29

136 Multidimensional transcriptomics provides detailed information about immune cell distribution and identity in HER2+ breast tumors

Salmen, F.; Vickovic, S.; Larsson, L.; Stenbeck, L.; Vallon-Christersson, J.; Ehinger, A.; Hakkinen, J.; Borg, A.; Frisen, J.; Stahl, P.; Lundeberg, J.

10.1101/358937 — cancer biology — Posted on 2018-06-29

137 Inferotemporal cortex multiplexes behaviorally-relevant target match signals and visual representations in a manner that minimizes their interference

Roth, N.; Rust, N. C.

10.1101/152181 — neuroscience — Posted on 2018-06-29

138 Salmonella effectors SseK1 and SseK3 target death domain proteins in the TNF and TRAIL signaling pathways

Newson, J.; Scott, N.; Yeuk Wah Chung, I.; Wong Fok Lung, T.; Giogha, C.; Wang, N.; Strugnell, R.; Brown, N.; Cygler, M.; Pearson, J.; Hartland, E.

10.1101/359117 — microbiology — Posted on 2018-06-29

139 Within-host infectious disease models accommodating cellular coinfection, with an application to influenza

Koelle, K.; Farrell, A.; Brooke, C.; Ke, R.

10.1101/359067 — epidemiology — Posted on 2018-06-29

140 A computational strategy for finding novel targets and therapeutic compounds for opioid dependence

Wu, X.; Xie, S.; Wang, L.; Fan, P.; Ge, S.; Xie, X.; Wu, W.

10.1101/359075 — systems biology — Posted on 2018-06-29

141 Three-dimensional culture of chicken primordial germ cells in chemically defined media containing the functional polymer FP003

Pain, B.; Jean, C.; Chen, Y.-C.; CHANG, W.-C.; Lin, S.-P.; Rival-Gervier, S.; MINAMI, M.; HAYASHI, H.; KANAKI, T.; WU, S.-C.

10.1101/358952 — cell biology — Posted on 2018-06-29

142 Transcriptomic analysis of fetal membranes reveals pathways involved in preterm birth

Pereyra, S.; Bertoni, B.; Sosa, C.; Sapiro, R.

10.1101/358945 — genetics — Posted on 2018-06-29

143 Categorized analysis of forest ecological values in the China’s conversion cropland to forest program

Yuan, W.; Zheng, J.; Gu, J.; Lu, G.

10.1101/358960 — ecology — Posted on 2018-06-29

144 CRISPRi-Seq for the Identification and Characterisation of Essential Mycobacterial Genes and Transcriptional Units

de Wet, T. J.; Gobe, I.; Mhlanga, M. M.; Warner, D. F.

10.1101/358275 — microbiology — Posted on 2018-06-29

145 Mouse Models of GNAO1-Associated Movement Disorder: Allele- and sex-specific differences in phenotypes

Feng, H.; Larrivee, C. L.; Demireva, E.; Xie, H.; Leipprandt, J.; Neubig, R. R.

10.1101/358614 — animal behavior and cognition — Posted on 2018-06-29

146 Validating genome-wide CRISPR-Cas9 function in the non-conventional yeast Yarrowia lipolytica

Schwartz, C.; Cheng, J.-F.; Evans, R.; Schwartz, C. A.; Wagner, J. M.; Anglin, S.; Beitz, A.; Pan, W.; Lonardi, S.; Blenner, M.; Alper, H. S.; Yoshikuni, Y.; Wheeldon, I.

10.1101/358630 — synthetic biology — Posted on 2018-06-29

147 Nested oscillatory dynamics in cortical organoids model early human brain network development

Trujillo, C. A.; Gao, R.; Negraes, P. D.; Chaim, I. A.; Domissy, A.; Vandenberghe, M.; Devor, A.; Yeo, G. W.; Voytek, B.; Muotri, A. R.

10.1101/358622 — neuroscience — Posted on 2018-06-29

148 Differential regional decline in dopamine receptor availability across adulthood: Linear and nonlinear effects of age

Seaman, K. L.; Juarez, E. J.; Smith, C.; Dang, L. C.; Castrellon, J.; Burgess, L. L.; San Juan, M. D.; Kundzicz, P. M.; Cowan, R. L.; Zald, D. H.; Samanez-Larkin, G.

10.1101/358200 — neuroscience — Posted on 2018-06-29

149 Induction and suppression of NF-κB signalling by a DNA virus of Drosophila

Palmer, W. H.; Joosten, J.; Overheul, G. J.; Jansen, P. W.; Vermeulen, M.; Obbard, D. J.; Van Rij, R. P.

10.1101/358176 — microbiology — Posted on 2018-06-29

150 The choice of tree prior and molecular clock does not substantially affect phylogenetic inferences of diversification rates

Sarver, B. A. J.; Pennell, M. W.; Brown, J. W.; Keeble, S.; Hardwick, K. M.; Sullivan, J.; Harmon, L. J.

10.1101/358788 — evolutionary biology — Posted on 2018-06-29

151 Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad taxonomic scale

Krehenwinkel, H.; Pomerantz, A.; Henderson, J. B.; Kennedy, S. R.; Lim, J. Y.; Swamy, V.; Shoobridge, J. D.; Patel, N. H.; Gillespie, R. G.; Prost, S.

10.1101/358572 — ecology — Posted on 2018-06-29

152 A multi-model Framework for the Arabidopsis life cycle

Zardilis, A.; Hume, A.; Millar, A. J.

10.1101/358408 — plant biology — Posted on 2018-06-29

153 Machine Learning Reveals Modules of Economic Behavior from Foraging Mice

Stacher Horndli, C. N.; Wong, E.; Ferris, E.; Rhodes, A. N.; Fletcher, P. T.; Gregg, C.

10.1101/357434 — neuroscience — Posted on 2018-06-29

154 Pre-stimulus oscillatory activity predicts successful episodic encoding for both young and older adults

Strunk, J.; Duarte, A.

10.1101/358721 — neuroscience — Posted on 2018-06-29

155 3’ Branch Ligation: A Novel Method to Ligate Non-Complementary DNA to Recessed or Internal 3’OH Ends in DNA or RNA

Wang, L.; Xi, Y.; Zhang, W.; Wang, W.; Shen, H.; Wang, X.; Zhao, X.; Alexeev, A.; Peters, B.; Albert, A.; Xu, X.; Ren, H.; Wang, O.; Kirkconnell, K.; Perazich, H.; Clark, S.; Hurowitz, E.; Chen, A.; Xu, X.; Drmanac, R.; Jiang, Y.

10.1101/357863 — molecular biology — Posted on 2018-06-29

156 Genome analysis of the unicellular eukaryote Euplotes vannus provides insights into mating type determination and tolerance to environmental stresses

Chen, X.; Jiang, Y.; Gao, F.; Zheng, W.; Krock, T. J.; Stover, N. A.; Lu, C.; Katz, L. A.; Song, W.

10.1101/357715 — genomics — Posted on 2018-06-29

157 Gene activation precedes DNA demethylation in response to infection in human dendritic cells

Pacis, A.; Mailhot-Leonard, F.; Tailleux, L.; Randolph, H. E.; Yotova, V.; Dumaine, A.; Grenier, J.-C.; Barreiro, L. B.

10.1101/358531 — genomics — Posted on 2018-06-29

158 Modeling the growth of organisms validates a general relation between metabolic costs and natural selection

Ilker, E.; Hinczewski, M.

10.1101/358440 — evolutionary biology — Posted on 2018-06-29

159 Universal metabolic constraints on the thermal tolerance of marine phytoplankton

Barton, S.; Jenkins, J.; Buckling, A.; Schaum, C.- E.; Smirnoff, N.; Yvon-Durocher, G.

10.1101/358002 — ecology — Posted on 2018-06-29

160 SCuPhr: A Probabilistic Framework for Cell Lineage Tree Reconstruction

Koptagel, H.; Jun, S.-H.; Lagergren, J.

10.1101/357442 — bioinformatics — Posted on 2018-06-29

161 Coopting the Lap system of Pseudomonas fluorescens to reversibly customize bacterial cell surfaces

Smith, T. J.; Sondermann, H.; O'Toole, G.

10.1101/358705 — bioengineering — Posted on 2018-06-29

162 Experimental determination of codon usage-dependent selective pressure on high copy-number genes in Saccharomyces cerevisiae

Josse, L.; Singh, T.; von der Haar, T.

10.1101/358259 — molecular biology — Posted on 2018-06-29

163 Wolbachia pipientis associated to tephritid fruit fly pests: from basic research to applications

Mateos, M.; Martinez, H.; Lanzavecchia, S. B.; Conte, C.; Guillen, K.; Moran-Aceves, B. M.; Toledo, J.; Liedo, P.; Asimakis, E. D.; Doudoumis, V.; Kyritsis, G. A.; Papadopoulos, N. T.; Avgoustinos, A. A.; Segura, D. F.; Tsiamis, G.; Bourtzis, K.

10.1101/358333 — ecology — Posted on 2018-06-29

164 Rice Galaxy: an open resource for plant science

Juanillas, V. M. J.; Dereeper, A.; Beaume, N.; Droc, G.; Dizon, J.; Mendoza, J. R.; Perdon, J. P.; Mansueto, L.; Triplett, L.; Lang, J.; Zhou, G.; Ratharanjan, K.; Plale, B.; Haga, J.; Leach, J. E.; Ruiz, M.; Thomson, M.; Alexandrov, N.; Larmande, P.; Kretzschmar, T.; Mauleon, R. P.

10.1101/358754 — bioinformatics — Posted on 2018-06-29

165 Distinct isoforms of Nrf1 diversely regulate different subsets of its cognate target genes

Wang, M.; Qiu, L.; Ru, X.; Song, Y.; Zhang, Y.

10.1101/356071 — molecular biology — Posted on 2018-06-28

166 Robust and stable transcriptional repression in Giardia using CRISPRi

McInally, S. G.; Hagen, K. D.; Nosala, C.; Williams, J.; Nguyen, K.; Booker, J.; Jones, K.; Dawson, S. C.

10.1101/358598 — microbiology — Posted on 2018-06-28

167 Genesis of the αβ T-cell receptor

Dupic, T.; Marcou, Q.; Mora, T.; Walczak, A. M.

10.1101/353128 — immunology — Posted on 2018-06-28

168 APC/CCdh1-mediated degradation of Cdh1 during meiosis in S. cerevisiae

Ostapenko, D.; Solomon, M. J.

10.1101/358655 — cell biology — Posted on 2018-06-28

169 The functional genomic circuitry of human glioblastoma stem cells

MacLeod, G.; Bozek, D. A.; Rajakulendran, N.; Monteiro, V.; Ahmadi, M.; Steinhart, Z.; Kushida, M. M.; Yu, H.; Coutinho, F. J.; Restall, I.; Hao, X.; Hart, T.; Luchman, H. A.; Weiss, S.; Dirks, P. B.; Angers, S.

10.1101/358432 — cancer biology — Posted on 2018-06-28

170 A Scalable, Multiplexed Assay for Decoding Receptor-Ligand Interactions

Jones, E. M.; Jajoo, R.; Cancilla, D.; Lubock, N. B.; Wang, J.; Satyadi, M.; Cheung, R.; de March, C.; Matsunami, H.; Kosuri, S.

10.1101/358739 — biochemistry — Posted on 2018-06-28

171 Integrated computational and Drosophila cancer model platform captures previously unappreciated chemicals perturbing a kinase network

Ung, P. M.-U.; Sonoshita, M.; Scopton, A. P.; Dar, A. C.; Cagan, R. L.; Schlessinger, A.

10.1101/344192 — cancer biology — Posted on 2018-06-28

172 Decoding Selective Attention to Context Memory: An Aging Study

Powell, P. S.; Strunk, J.; James, T.; Polyn, S.; Duarte, A.

10.1101/324384 — neuroscience — Posted on 2018-06-28

173 Alpha-synuclein-induced mitochondrial dysfunction is mediated via a sirtuin 3-dependent pathway.

Park, J.-H.; Delenclos, M.; Faroqi, A. H.; DeMeo, N. N.; McLean, P.

10.1101/357624 — neuroscience — Posted on 2018-06-28

174 Quantifying Codon Usage in Signal Peptides: Gene Expression and Amino Acid Usage Explain Apparent Selection for Inefficient Codons

Cope, A. L.; Hettich, R. L.; Gilchrist, M. A.

10.1101/347849 — evolutionary biology — Posted on 2018-06-28

175 MEIOB and SPATA22 resemble RPA subunits and interact with the RPA complex to promote meiotic recombination

Ribeiro, J.; Dupaigne, P.; Duquenne, C.; Veaute, X.; Petrillo, C.; Saintome, C.; Faklaris, O.; Busso, D.; Guerois, R.; Keeney, S.; Jain, D.; Martini, E.; Livera, G.

10.1101/358242 — cell biology — Posted on 2018-06-28

176 An image-based assay to quantify changes in proliferation and viability upon drug treatment in 3D microenvironments

Siruvallur Murali, V.; Chang, B.-J.; Fiolka, R.; Danuser, G.; Cobanoglu, M. C.; Welf, E.

10.1101/312504 — cancer biology — Posted on 2018-06-28

177 Sound induces change in orientation preference of V1 neurons: Audio-visual cross-influence

Chanauria, N.; Bharmauria, V.; Bachatene, L.; Cattan, S.; Rouat, J.; Molotchnikoff, S.

10.1101/269589 — neuroscience — Posted on 2018-06-28

178 Regulation of checkpoint kinase signalling and tumorigenesis by the NF-κB regulated gene, CLSPN

Hunter, J. E.; Butterworth, J. A.; Sellier, H.; Luli, S.; Floudas, A.; Moore, A. J.; Thomas, H. D.; Campbell, K. J.; Kenneth, N. S.; Chiremba, R. T.; Tiniakos, D.; Knight, A. M.; Gewurz, B. E.; Oakley, F.; Garrett, M. D.; Collins, I.; Perkins, N. D.

10.1101/358291 — cancer biology — Posted on 2018-06-28

179 Exploring Mechanisms of Inhibition of Amyloid Seeding of Transthyretin

Saelices, L.; Chung, K.; Lee, J. H.; Coelho, T.; Bijzet, J.; Benson, M. D.; Eisenberg, D.

10.1101/354720 — biochemistry — Posted on 2018-06-28

180 KRASG12D and TP53R167H Cooperate to Induce Pancreatic Ductal Adenocarcinoma in Sus Scrofa Pigs

Principe, D. R.; Overgaard, N. H.; Park, A. J.; Diaz, A. M.; Torres, C.; McKinney, R.; Dorman, M. J.; Castellanos, K.; Schwind, R.; Dawson, D. W.; Rana, A.; Maker, A.; Munshi, H. G.; Rund, L. A.; Grippo, P. J.; Schook, L. B.

10.1101/358416 — cancer biology — Posted on 2018-06-28

181 Changes in temperature alter susceptibility to a virus following a host shift

Roberts, K.; Hadfield, J. D.; Sharma, M. D.; Longdon, B.

10.1101/358564 — evolutionary biology — Posted on 2018-06-28

182 Genetic heterogeneity in Anopheles darlingi related to biting behavior in western Amazon

Campos, M.; Alonso, D. P.; Conn, J. E.; Vinetz, J.; Emerson, K. J.; Ribolla, P. E. M.

10.1101/358556 — epidemiology — Posted on 2018-06-28

183 Allosteric Role of Substrate Occupancy Toward the Alignment of P-glycoprotein Nucleotide Binding Domains

Pan, L.; Aller, S.

10.1101/358549 — biophysics — Posted on 2018-06-28

184 Synthetic negative feedback circuits using engineered small RNAs

Kelly, C. L.; Harris, A. W. K.; Steel, H.; Hancock, E. J.; Heap, J. T.; Papachristodoulou, A.

10.1101/184473 — synthetic biology — Posted on 2018-06-28

185 A Freeloader?: The Highly Eroded Yet Large Genome of the Serratia symbiotica symbiont of Cinara strobi

Manzano-Marin, A.; Coeur d'acier, A.; Clamens, A.-L.; Orvain, C.; Cruaud, C.; Barbe, V.; Jousselin, E.

10.1101/305458 — genomics — Posted on 2018-06-28

186 RNA sequencing (RNA-seq) reveals extremely low levels of reticulocyte-derived globin gene transcripts in peripheral blood from horses (Equus caballus) and cattle (Bos taurus)

Correia, C. N.; McLoughlin, K. E.; Nalpas, N. C.; Magee, D. A.; Browne, J. A.; Rue-Albrecht, K.; Gordon, S. V.; MacHugh, D. E.

10.1101/294330 — genomics — Posted on 2018-06-28

187 Signals of polygenic adaptation on height have been overestimated due to uncorrected population structure in genome-wide association studies

Sohail, M.; Maier, R. M.; Ganna, A.; Bloemendal, A.; Martin, A. R.; Turchin, M. C.; Chiang, C. W. K.; Hirschhorn, J. N.; Daly, M. J.; Patterson, N.; Neale, B. M.; Mathieson, I.; Reich, D.; Sunyaev, S. R.

10.1101/355057 — evolutionary biology — Posted on 2018-06-28

188 Visualizing Transitions and Structure for Biological Data Exploration

Moon, K. R.; van Dijk, D.; Wang, Z.; Gigante, S.; Burkhardt, D.; Chen, W.; van den Elzen, A.; Hirn, M. J.; Coifman, R. R.; Ivanova, N. B.; Wolf, G.; Krishnaswamy, S.

10.1101/120378 — bioinformatics — Posted on 2018-06-28

189 Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer’s Disease

Elsheikh, S. S. M.; Chimusa, E. R.; Mulder, N. J.; Crimi, A.

10.1101/342436 — bioinformatics — Posted on 2018-06-28

190 Improving Children’s and Their Visitors’ Hand Hygiene Compliance

Lary, D.; Calvert, A.; Nerlich, B.; Segal, J.; Vaughan, N.; Randle, J.; Hardie, K.

10.1101/355818 — scientific communication and education — Posted on 2018-06-28

191 Knockdown of butyrylcholinesterase but not inhibition by chlorpyrifos alters early differentiation mechanisms in human neural stem cells

Teithof, A. K.; Richardson, J. R.; Hart, R. P.

10.1101/354308 — pharmacology and toxicology — Posted on 2018-06-28

192 Nominally non-responsive frontal and sensory cortical cells encode task-relevant variables via ensemble consensus-building

Insanally, M. N.; Carcea, I.; Field, R. E.; Rodgers, C. C.; DePasquale, B.; Rajan, K.; DeWeese, M. R.; Albanna, B. F.; Froemke, R. C.

10.1101/347617 — neuroscience — Posted on 2018-06-28

193 Quantification of genetic components of population differentiation in UK Biobank traits reveals signals of polygenic selection

Liu, X.; Loh, P.-R.; O'Connor, L. J.; Gazal, S.; Schoech, A.; Maier, R. M.; Patterson, N.; Price, A. L.

10.1101/357483 — genetics — Posted on 2018-06-28

194 The effects of drought and nutrient addition on soil organisms vary across taxonomic groups, but are constant across seasons

Siebert, J.; Suennemann, M.; Auge, H.; Berger, S.; Cesarz, S.; Ciobanu, M.; Guerrero-Ramirez, N. R.; Eisenhauer, N.

10.1101/348359 — ecology — Posted on 2018-06-28

195 Antagonistic paralogs control a switch between growth and pathogen resistance in C. elegans

Reddy, K. C.; Dror, T.; Underwood, R. S.; Osman, G. A.; Desjardins, C. A.; Cuomo, C. A.; Barkoulas, M.; Troemel, E. R.

10.1101/357756 — genetics — Posted on 2018-06-28

196 Circulation of Foot-and-Mouth Disease Virus in Africa and identification of the underlying constraints using Phylogeographic methods

Duchatel, F.; Bronsvoort, M.; Lycett, S.

10.1101/358044 — evolutionary biology — Posted on 2018-06-28

197 Combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression data in cancer with CancerInSilico

Sherman, T. D.; Kagohara, L. T.; Cao, R.; Cheng, R.; Satriano, M.; Considine, M.; Krigsfeld, G.; Ranaweera, R.; Tang, Y.; Jablonski, S.; Stein-O'Brien, G.; Gaykalova, D.; Weiner, L. M.; Chung, C.; Fertig, E.

10.1101/328807 — systems biology — Posted on 2018-06-28

198 Robust detection of tandem repeat expansions from long DNA reads

Mitsuhashi, S.; Frith, M. C.; Mizuguchi, T.; Miyatake, S.; Toyota, T.; Adachi, H.; Oma, Y.; Kino, Y.; Mitsuhashi, H.; Matsumoto, N.

10.1101/356931 — genetics — Posted on 2018-06-28

199 Integral Gene Drives: an \"operating system\" for population replacement

Nash, A.; Mignini Urdaneta, G.; Beaghton, A. K.; Hoermann, A.; Papathanos, P. A.; Christophides, G.; Windbichler, N.

10.1101/356998 — synthetic biology — Posted on 2018-06-28

200 Reward signaling in a recurrent circuit of dopaminergic neurons and Kenyon cells

Lyutova, R.; Pfeuffer, M.; Segebarth, D.; Habenstein, J.; Selcho, M.; Wegener, C.; Thum, A. S.; Pauls, D.

10.1101/357145 — neuroscience — Posted on 2018-06-28

201 Identification of evolutionarily conserved virulence factor by selective pressure analysis of Streptococcus pneumoniae

Yamaguchi, M.; Goto, K.; Hirose, Y.; Yamaguchi, Y.; Sumitomo, T.; Nakata, M.; Nakano, K.; Kawabata, S.

10.1101/356212 — microbiology — Posted on 2018-06-28

202 C. elegans genetic background modifies the core transcriptional response in an α-synuclein model of Parkinson’s disease

Wang, Y. A.; Snoek, L. B.; Sterken, M. G.; Riksen, J. A.; Stastna, J. J.; Kammenga, J.; Harvey, S. C.

10.1101/348623 — genomics — Posted on 2018-06-28

203 Susceptibility of European freshwater fish to climate change: species profiling based on life-history and environmental characteristics

Jaric, I.; Lennox, R. J.; Kalinkat, G.; Cvijanovic, G.; Radinger, J.

10.1101/355875 — ecology — Posted on 2018-06-28

204 Boundary Strength Analysis: Combining colour pattern geometry and coloured patch visual properties for use in predicting behaviour and fitness

Endler, J. A.; Cole, G. L.; Kranz, X.

10.1101/342063 — animal behavior and cognition — Posted on 2018-06-28

205 Classification of mouse ultrasonic vocalizations using deep learning

Ivanenko, A.; Watkins, P.; van Gerven, M. A. J.; Hammerschmidt, K.; Englitz, B.

10.1101/358143 — bioinformatics — Posted on 2018-06-28

206 Massive single-cell RNA-seq analysis and imputation via deep learning

Deng, Y.; Bao, F.; Dai, Q.; Wu, L.; Altschuler, S.

10.1101/315556 — bioinformatics — Posted on 2018-06-28

207 Predicting local tissue mechanics using immunohistochemistry

Koser, D. E.; Moeendarbary, E.; Kuerten, S.; Franze, K.

10.1101/358119 — biophysics — Posted on 2018-06-28

208 Higher order spherical harmonics reconstruction of fetal diffusion MRI with intensity correction

Deprez, M.; Price, A. N.; Christiaens, D.; Lockwood Estrin, G.; Cordero Grande, L.; Hutter, J.; Daducci, A.; Tournier, J.-D.; Rutherford, M. A.; Counsell, S.; Bach Cuadra, M.; Hajnal, J. V.

10.1101/297341 — neuroscience — Posted on 2018-06-28

209 Seroprevalence of fourteen human polyomaviruses determined in blood donors

Kamminga, S. S.; van der Meijden, E. P.; Feltkamp, M. M.; Zaaijer, H. H.

10.1101/357350 — microbiology — Posted on 2018-06-28

210 Modelling the brain response to arbitrary visual stimulation patterns for a flexible high-speed BCI

Nagel, S.; Spueler, M.

10.1101/358036 — neuroscience — Posted on 2018-06-28

211 Sensory Over-Responsivity: Parent Report, Direct Assessment Measures, and Neural Architecture

Tavassoli, T.; Brandes-Aitken, A.; Chu, R.; Porter, L.; Schoen, S.; Miller, L. J.; Gerdes, M. R.; Owen, J.; Mukherjee, P.; Marco, E. J.

10.1101/355628 — neuroscience — Posted on 2018-06-28

212 To B or not to B: Arsenophonus as a source of B-vitamins in whiteflies.

Santos-Garcia, D.; Juravel, K.; Freilich, S.; Zchori-Fein, E.; Latorre, A.; Moya, A.; Morin, S.; Silva, F. J.

10.1101/311076 — microbiology — Posted on 2018-06-28

213 Endometrial receptivity revisited: endometrial transcriptome adjusted for tissue cellular heterogeneity

Suhorutshenko, M.; Kukushkina, V.; Velthut-Meikas, A.; Altmäe, S.; Peters, M.; Mägi, R.; Krjutshkov, K.; Koel, M.; Martinez-Blanch, J. F.; Codoner, F.; Vilella, F.; Simon, C.; Salumets, A.; Laisk, T.

10.1101/357152 — genomics — Posted on 2018-06-28

214 Reactivation of TAp73 tumor suppressor by protoporphyrin IX, a metabolite of aminolevulinic acid, compensates for p53 loss and induces apoptosis in TP53-deficient cancer cells.

Sznarkowska, A.; Kostecka, A.; Koczergo, K.; Kawiak, A.; Acedo, P.; Lion, M.; Inga, A.; Zawacka-Pankau, J.

10.1101/357293 — cancer biology — Posted on 2018-06-28

215 Forget Pixels: Adaptive Particle Representation of Fluorescence Microscopy Images

Cheeseman, B. L.; Günther, U.; Susik, M.; Gonciarz, K.; Sbalzarini, I. F.

10.1101/263061 — bioinformatics — Posted on 2018-06-28

216 Single-embryo and single-blastomere immunoblotting reports protein expression heterogeneity in early-stage preimplantation embryos

Rosas, E.; Modzelewski, A. J.; He, L.; Herr, A. E.

10.1101/357731 — bioengineering — Posted on 2018-06-28

217 The IMMUNE-ASSOCIATED NUCLEOTIDE-BINDING 9 protein is a regulator of basal immunity in Arabidopsis thaliana

Wang, Y.; Li, Y.; Rosas-Diaz, T.; Caceres-Moreno, C.; Lozano-Duran, R.; Macho, A.

10.1101/277269 — plant biology — Posted on 2018-06-28

218 Segmentation of Myelin-like Signals on Clinical MR Images for Age Estimation in Preterm Infants

Deprez, M.; Wang, S.; Ledig, C.; Hajnal, J.; Counsell, S.; Schnabel, J.

10.1101/357749 — neuroscience — Posted on 2018-06-28

219 Kilohertz frame-rate two-photon tomography

Kazemipour, A.; Novak, O.; Flickinger, D.; Marvin, J. S.; King, J.; Borden, P.; Druckmann, S.; Svoboda, K.; Looger, L. L.; Podgorski, K.

10.1101/357269 — neuroscience — Posted on 2018-06-28

220 A one penny imputed genome from next generation reference panels

Browning, B. L.; Zhou, Y.; Browning, S. R.

10.1101/357806 — bioinformatics — Posted on 2018-06-28

221 Far beyond common leeching: insights into an ancient medical device through integrated omics data

Babenko, V. V.; Podgorny, O. V.; Manuvera, V. A.; Kasianov, A. S.; Manolov, A. I.; Grafskaia, E. N.; Shirokov, D. A.; Kurdyumov, A. S.; Vinogradov, D. V.; Nikitina, A. S.; Kovalchuk, S. I.; Anikanov, N. A.; Butenko, I. O.; Vakhitova, M. T.; Pobeguts, O. V.; Matushkina, D. S.; Rakitina, D. V.; Kharlampieva, D. D.; Polina, N. F.; Bobrovsky, P. A.; Kostryukova, E. S.; Zgoda, V. G.; Baskova, I. P.; Gelfand, M. S.; Govorun, V. M.; Lazarev, V. N.

10.1101/357681 — systems biology — Posted on 2018-06-28

222 A powerful framework for an integrative study with heterogeneous omics data: from univariate statistics to multi-block analysis

Durufle, H.; Selmani, M.; Ranocha, P.; Jamet, E.; Dunand, C.; Dejean, S.

10.1101/357921 — systems biology — Posted on 2018-06-28

223 Exacerbation of blood brain barrier dysfunction and brain injury after aneurysmal subarachnoid hemorrhage in endothelial specific S1PR1 knock out mice.

Ito, A.; Yuan, H.; Lee, Y.; Kim, G. S.; Faraco, G.; Proia, R.; Nizuma, K.; Tominaga, T.; Anrather, J.; Iadecola, C.; Kluk, M.; Sanchez, T.

10.1101/357236 — neuroscience — Posted on 2018-06-28

224 Neural correlates of effort-based valuation with prospective choices

Aridan, N.; Malecek, N.; Poldrack, R.; Schonberg, T.

10.1101/357327 — neuroscience — Posted on 2018-06-28

225 The monothiol glutaredoxin Grx4 interacts with the Cryptococcus iron regulator Cir1 and regulates iron homeostasis and virulence in the Cryptococcus neoformans

Attarian, R.; Hu, G.; Caza, M.; Sanchez-Leon, E.; Croll, D.; Do, E.; Bach, H.; Missall, T.; Lodge, J.; Jung, W. H.; Kronstad, J. W.

10.1101/356774 — microbiology — Posted on 2018-06-28

226 Utilisation of the Prestwick Chemical Library (R) to identify drugs that inhibit the growth of Mycobacteria

Alderwick, L. J.; Kanvatirth, P.; Besra, G.; Jeeves, R. E.; Bacon, J.

10.1101/357897 — microbiology — Posted on 2018-06-28

227 Targeted Reduction of Pathogenic Heteroplasmy Through Binding of G-Quadruplex DNA

Naeem, M. M.; Maheshan, R.; Costford, S. R.; Kaufman, B. A.; Sondheimer, N.

10.1101/358101 — genetics — Posted on 2018-06-28

228 Antagonistic paralogs control a switch between growth and pathogen resistance in C. elegans

Reddy, K. C.; Dror, T.; Underwood, R. S.; Osman, G. A.; Desjardins, C. A.; Cuomo, C. A.; Barkoulas, M.; Troemel, E. R.

10.1101/357756 — genetics — Posted on 2018-06-28

229 Circulation of Foot-and-Mouth Disease Virus in Africa and identification of the underlying constraints using Phylogeographic methods

Duchatel, F.; Lycett, S.; Bronsvoort, M.

10.1101/358044 — evolutionary biology — Posted on 2018-06-28

230 Assessing the impact of taxon resolution on network structure, with implication for comparative ecology

Hemprich-Bennett, D. R.; Oliveira, H. F. M.; Le Comber, S. C.; Rossiter, S. J.; Clare, E. L.

10.1101/357376 — ecology — Posted on 2018-06-28

231 Occurrence of diamondback moths Plutella xylostella and their parasitoid wasps Cotesia vestalis in mizuna greenhouses and their surrounding areas

Abe, J.; Uefune, M.; Yoneya, K.; Shiojiri, K.; Takabayashi, J.

10.1101/357814 — ecology — Posted on 2018-06-28

232 Conservation of epigenetic regulation by the MLL3/4 tumour suppressor in planarian pluripotent stem cells

Mihaylova, Y.; Abnave, P.; Kao, D.; Hughes, S.; Lai, A.; Jaber-Hijazi, F.; Kosaka, N.; Aboobaker, A.

10.1101/126540 — developmental biology — Posted on 2018-06-28

233 VERA: agent-based modeling transmission of antibiotic resistance between human pathogens and gut microbiota

Glushchenko, O.; Prianichnikov, N.; Olekhnovich, E.; Manolov, A.; Odinzova, V.; Tyaht, A.; Kostrukova, E.; Ilina, E.

10.1101/356824 — bioinformatics — Posted on 2018-06-28

234 Identification of biomarker and HPV strain for Cervical Cancer from pre-existing RNAseq data

Guo, S.; Hao, Y.; Brown, S.

10.1101/355040 — bioinformatics — Posted on 2018-06-28

235 An analog to digital converter creates nuclear localization pulses in yeast calcium signaling

Hsu, I. S.; Strome, B.; Plotnikov, S.; Moses, A. M.

10.1101/357939 — systems biology — Posted on 2018-06-28

236 Methionine coordinates a hierarchically organized anabolic program enabling proliferation.

Walvekar, A.; Srinivasan, R.; Gupta, R.; Laxman, S.

10.1101/249367 — systems biology — Posted on 2018-06-28

237 Tissue embedding in a silica hydrogel for functional investigations

Miazzi, F.; Kaltofen, S.; Bello, J.; Hansson, B. S.; Wicher, D.

10.1101/357962 — neuroscience — Posted on 2018-06-28

238 Peak p-values and false discovery rate inference in neuroimaging

Schwartzman, A.; Telschow, F.

10.1101/358051 — neuroscience — Posted on 2018-06-28

239 Wearable Eye-tracking for Research: Automated dynamic gaze mapping and accuracy/precision comparisons across devices

MacInnes, J. J.; Iqbal, S.; Pearson, J.; Johnson, E. N.

10.1101/299925 — neuroscience — Posted on 2018-06-28

240 MeCP2 isoform e1 mutant mice recapitulate motor and metabolic phenotypes of Rett syndrome

Vogel Ciernia, A.; Yasui, D. H.; Pride, M. C.; Durbin-Johnson, B.; Noronha, A.; Chang, A.; Knotts, T.; Rutkowsky, J.; Ramsey, J. J.; Crawley, J. N.; LaSalle, J. M.

10.1101/357707 — neuroscience — Posted on 2018-06-28

241 Nemo-like kinase regulates Progranulin levels in the brain through the microglial endocytosis-lysosomal pathway

Dong, T.; Kokubu, H.; Driessen, T. M.; Tejwani, L.; Lim, J.

10.1101/358010 — neuroscience — Posted on 2018-06-28

242 Cyborg Groups Enhance Face Recognition in Crowded Environments

Valeriani, D.; Poli, R.

10.1101/357004 — neuroscience — Posted on 2018-06-28

243 Effects of chronic spinal cord injury on relationships among ion channel and receptor mRNAs in mouse lumbar spinal cord

Garcia, V. B.; Abbinanti, M. D.; Harris-Warrick, R. M.; Schulz, D. J.

10.1101/357665 — neuroscience — Posted on 2018-06-28

244 Genomics of Cryptococcus neoformans

Ashton, P. M.; Thanh, L. T.; Trieu, P. H.; Van Anh, D.; Trinh, N. M.; Beardsley, J.; Kibengo, F.; Chierakul, W.; Dance, D. A.; Hung, L. Q.; Chau, N. V. V.; Tung, N. L. N.; Chan, A. K.; Thwaites, G. E.; Lalloo, D. G.; Anscombe, C.; Nhat, L. T. H.; Perfect, J.; Dougan, G.; Baker, S.; Harris, S.; Day, J. N.

10.1101/356816 — microbiology — Posted on 2018-06-28

245 Type I-E CRISPR-Cas system as immune system in a eukaryote

Rath, D.; Amlinger, L.; Bindal, G.; Lundgren, M.

10.1101/357301 — microbiology — Posted on 2018-06-28

246 The reovirus μ1 protein contributes to the environmental stability of virions

Snyder, A. J.; Wang, J. C.-Y.; Danthi, P.

10.1101/357343 — microbiology — Posted on 2018-06-28

247 Sclerostin Deficiency Alters Peripheral B Lymphocyte Responses in Mice

Chow, A.; Mason, J.; Coney, L.; Bajwa, J.; Zaslavsky, A.; Pellman, Y.; Garcia-Ojeda, M. E.; Economides, A.; Loots, G.; Manilay, J. O.

10.1101/357772 — immunology — Posted on 2018-06-28

248 Host dietary specialization and neutral assembly shape gut bacterial communities of wild dragonflies

Deb, R.; Nair, A.; Agashe, D.

10.1101/357996 — evolutionary biology — Posted on 2018-06-28

249 Schizophrenia risk and reproductive success: A Mendelian randomization study.

Lawn, R. B.; Sallis, H. M.; Taylor, A. E.; Wootton, R. E.; Davey Smith, G.; Davies, N. M.; Hemani, G.; Fraser, A.; Penton-Voak, I. S.; Munafo, M. R.

10.1101/357673 — evolutionary biology — Posted on 2018-06-28

250 blockCV: an R package for generating spatially or environmentally separated folds for k-fold cross-validation of species distribution models

Valavi, R.; Elith, J.; Lahoz-Monfort, J. J.; Guillera-Arroita, G.

10.1101/357798 — ecology — Posted on 2018-06-28

251 Enhancing Percolation in Phosphatic Clay Using Diatoms under Laboratory Conditions

Horton, M. D.; Vital, D.; Spaulding, S.; Albarelli, G.; Defino, P.

10.1101/357889 — ecology — Posted on 2018-06-28

252 Differences in the path to exit the ribosome across the three domains of life

Dao Duc, K.; Batra, S. S.; Bhattacharya, N.; Cate, J. H. D.; Song, Y. S.

10.1101/357970 — biophysics — Posted on 2018-06-28

253 Impact of index hopping and bias towards the reference allele on accuracy of genotype calls from low-coverage sequencing

Ros-Freixedes, R.; Battagin, M.; Johnsson, M.; Gorjanc, G.; Mileham, A. J.; Rounsley, S. D.; Hickey, J.

10.1101/358085 — bioinformatics — Posted on 2018-06-28

254 Integrated identification and quantification error probabilities for shotgun proteomics

The, M.; Käll, L.

10.1101/357285 — bioinformatics — Posted on 2018-06-28

255 Finding the difference between periosteal and endocortical bone adaptation by using Artificial Neural Networks

Tiwari, A. K.; Prasad, J.

10.1101/357871 — bioengineering — Posted on 2018-06-28

256 Real-time three-dimensional MRI for the assessment of dynamic carpal instability

Shaw, C. B.; Foster, B. H.; Borgese, M.; Boutin, R. D.; Bateni, C.; Bayne, C. O.; Szabo, R. M.; Nayak, K. S.; Chaudhari, A.

10.1101/351593 — bioengineering — Posted on 2018-06-28

257 The evolution of a beneficial association between an animal and a microbial community

Rebar, D.; Leggett, H. C.; Aspinall, S. M. L.; Duarte, A.; Kilner, R. M.

10.1101/357657 — animal behavior and cognition — Posted on 2018-06-28

258 Value computations underlying human proposer behaviour in the Ultimatum Game

Pulcu, E.; Haruno, M.

10.1101/100313 — neuroscience — Posted on 2018-06-28

259 Grey matter biomarker identification in Schizophrenia: detecting regional alterations and their underlying substrates

Chatzi, V.; A. G. Teixeira, R. P.; Shawe-Taylor, J.; Altmann, A.; O' Daly, O. G.; Christiaens, D.; Schrouff, J.; Tournier, J.-D.

10.1101/357954 — neuroscience — Posted on 2018-06-28

260 CFTR misfolds during native-centric simulations due to entropic penalties of native state formation

Shi, J.; Cleveland, T.; Powe, A. C.; McGaughey, G.; Pande, V.

10.1101/350074 — molecular biology — Posted on 2018-06-28

261 Myc is dispensable for cardiac development in the mouse but can rescue Mycn-deficient hearts through functional replacement and cell competition

Munoz-Martin, N.; Sierra, R.; Schimmang, T.; Villa del Campo, C.; Torres, M.

10.1101/357335 — developmental biology — Posted on 2018-06-28

262 Tetrahymena RIB72A and RIB72B are Microtubule Inner Proteins in the ciliary doublet microtubules

Stoddard, D. J.; Zhao, Y.; Bayless, B. A.; Gui, L.; Louka, P.; Dave, D.; Suryawanshi, S.; Tomasi, R. F.- X.; Dupuis-Williams, P.; Baroud, C. N.; Gaertig, J.; Winey, M.; Nicastro, D.

10.1101/356428 — cell biology — Posted on 2018-06-28

263 Nuclear actin is required for transcription during Drosophila oogenesis

Sokolova, M.; Moore, H. M.; Prajapati, B.; Dopie, J.; Merilainen, L.; Honkanen, M.; Cerejeira Matos, R.; Poukkula, M.; Hietakangas, V.; Vartiainen, M.

10.1101/358028 — cell biology — Posted on 2018-06-28

264 Antiretroviral Adverse Drug Reactions Pharmacovigilance in Harare City, Zimbabwe, 2017

Mugauri, H.; Juru, T.; Mugurungi, O.; Gombe, N.; Shambira, G.; Tshimanga, M.

10.1101/358069 — epidemiology — Posted on 2018-06-28

265 Rarity of microbial species: In search of reliable associations

Cougoul, A.; Bailly, X.; Vourc'h, G.; Gasqui, P.

10.1101/358077 — bioinformatics — Posted on 2018-06-28

266 Identification of FDA-approved drugs as novel allosteric inhibitors of human executioner caspases

KRISHNA DEEPAK, R. N. V. R. N. V.; Abdullah, A.; Talwar, P.; Fan, H.; Palaniyandi, R.

10.1101/356956 — bioinformatics — Posted on 2018-06-27

267 Exome-wide association study on Albuminuria identifies a novel rare variant in CUBN and additional genes, in 33,985 Europeans with and without diabetes

Ahluwalia, T. S.; Schulz, C.-A.; Waage, J.; Skaaby, T.; Sandholm, N.; van Zuydam, N.; Charmet, R.; Bork-Jensen, J.; Almgren, P.; Thuesen, B. H.; Bedin, M.; Brandslund, I.; Christensen, C. K.; Linneberg, A.; Ahlqvist, E.; Groop, P.-H.; Hadjadj, S.; Tregouet, D.-A.; Joergensen, M. E.; Grarup, N.; Simons, M.; Groop, L.; Orho-Melander, M.; McCarthy, M.; Melander, O.; Rossing, P.; Kilpelainen, T. O.; Hansen, T.

10.1101/355990 — genetics — Posted on 2018-06-27

268 Bulked-Segregant Analysis Coupled to Whole Genome Sequencing (BSA-Seq) for Rapid Gene Cloning in Maize

Klein, H.; Xiao, Y.; Conklin, P. A.; Govindarajulu, R.; Kelly, J. A.; Scanlon, M. J.; Whipple, C. J.; Bartlett, M.

10.1101/357384 — plant biology — Posted on 2018-06-27

269 A nonsense mutation in Myelin Protein Zero causes congenital hypomyelination neuropathy through altered P0 membrane targeting and gain of abnormal function

Fratta, P.; Ornaghi, F.; Dati, G.; Zambroni, D.; Saveri, P.; Belin, S.; D'Adamo, P.; Shy, M.; Quattrini, A.; Feltri, M. L.; Wrabetz, L.

10.1101/352112 — neuroscience — Posted on 2018-06-27

270 Genome plasticity, a key factor of evolution in prokaryotes

Sela, I.; Wolf, Y. I.; Koonin, E. V.

10.1101/357400 — microbiology — Posted on 2018-06-27

271 Leveraging mutational burden for complex trait prediction in sorghum

Valluru, R.; Gazave, E. E.; Fernandes, S. B.; Ferguson, J. N.; Lozano, R.; Hirannaiah, P.; Zuo, T.; Brown, P. J.; Leakey, A. D. B.; Gore, M. A.; Buckler, E. S.; Bandillo, N.

10.1101/357418 — genetics — Posted on 2018-06-27

272 Quantification of genetic components of population differentiation in UK Biobank traits reveals signals of polygenic selection

Liu, X.; Price, A. L.; Loh, P.-R.; O'Connor, L. J.; Gazal, S.; Schoech, A.; Maier, R. M.; Patterson, N.

10.1101/357483 — genetics — Posted on 2018-06-27

273 N-Cadherin Provides a Cis and Trans Ligand for Astrotactin that Functions in Glial-Guided Neuronal Migration

Horn, Z.; Behesti, H.; Hatten, M. E.

10.1101/357541 — developmental biology — Posted on 2018-06-27

274 The Genetic Basis for the Cooperative Bioactivation of Plant Lignans by a Human Gut Bacterial Consortium

Bess, E. N.; Bisanz, J. E.; Spanogiannopoulos, P.; Ang, Q. Y.; Bustion, A.; Kitamura, S.; Alba, D. L.; Wolan, D. W.; Koliwad, S. K.; Turnbaugh, P. J.

10.1101/357640 — microbiology — Posted on 2018-06-27

275 Adaptive Sampling for Spatial Capture-Recapture: An efficient sampling scheme for rare or patchily distributed species

Wong, A.; Fuller, A. K.; Royle, J. A.

10.1101/357459 — ecology — Posted on 2018-06-27

276 Tropomyosin 3.5 protects F-actin networks required for tissue biomechanical properties

Cheng, C.; Nowak, R. B.; Amadeo, M. B.; Biswas, S. K.; Lo, W.-K.; Fowler, V. M.

10.1101/357509 — cell biology — Posted on 2018-06-27

277 Spatial Release from Masking: Evidence from Near Infrared Spectroscopy

Ihlefeld, A.; Zhang, M.

10.1101/357525 — neuroscience — Posted on 2018-06-27

278 Combined inhibition of apoptosis and necrosis promotes transient neuroprotection of retinal ganglion cells and partial axon regeneration after optic nerve damage

Kayama, M.; Omura, K.; Murakami, Y.; Reshef, E.; Thanos, A.; Morizane, Y.; Gianni, A.; Nakazawa, T.; Miller, J.; Benowitz, L.; Vavvas, D.

10.1101/357566 — neuroscience — Posted on 2018-06-27

279 Electron microscopy 3-dimensional segmentation and quantification of axonal dispersion and diameter distribution in mouse brain corpus callosum

Lee, H.-H.; Yaros, K.; Veraart, J.; Pathan, J.; Liang, F.-X.; Kim, S. G.; Novikov, D. S.; Fieremans, E.

10.1101/357491 — neuroscience — Posted on 2018-06-27

280 Slow Normal Modes of Proteins are Accurately Reproduced across Different Platforms

Na, H.; ben-Avraham, D.; Tirion, M.

10.1101/357632 — molecular biology — Posted on 2018-06-27

281 DataRemix: a universal data transformation for optimal inference from gene expression datasets

Mao, W.; Hausler, R.; Chikina, M.

10.1101/357467 — genomics — Posted on 2018-06-27

282 Mapping Mouse Brain Slice Sequence to a Reference Brain Without 3D Reconstruction

Xiong, J.; Ren, J.; Luo, L.; Horowitz, M.

10.1101/357475 — bioinformatics — Posted on 2018-06-27

283 Meta-analysis of 1,200 transcriptomic profiles identifies a prognostic model for pancreatic ductal adenocarcinoma

Sandhu, V.; Labori, K. J.; Borgida, A.; Lungu, I.; Bartlett, J.; Hafezi-Bakhtiari, S.; Denroche, R.; Jang, G. H.; Pasternack, D.; Mbaabali, F.; Watson, M.; Wilson, J.; Kure, E. H.; Gallinger, S.; Haibe-Kains, B.

10.1101/355602 — genomics — Posted on 2018-06-27

284 Kunitz type protease inhibitor EgKI-1 from the canine tapeworm Echinococcus granulosus as a promising anti-cancer therapeutic

Ranasinghe, S. L.; Boyle, G. M.; Fischer, K.; Potriquet, J.; Mulvenna, J. P.; McManus, D. P.

10.1101/357590 — cancer biology — Posted on 2018-06-27

285 Direct Observation of Topoisomerase IA Gate Dynamics

Mills, M.; Tse-Dinh, Y.-C.; Neuman, K. C.

10.1101/356659 — biophysics — Posted on 2018-06-27

286 The gill-associated symbiont microbiome is a main source of woody-plant polysaccharide hydrolase genes and secondary metabolite gene clusters in Neoteredo reynei, a unique shipworm from south Atlantic mangroves.

Lima Brito, T.; Barreto Campos, A.; Bastiaan von Meijenfeldt, F. A.; Paulino Daniel, J.; Ribeiro, G. B.; Gueiros Zacarias Silva, G.; Morais, D.; Veras Wilke, D.; Dutilh, B. E.; Meirelles, P. M.; Trindade Silva, A. E.

10.1101/357616 — microbiology — Posted on 2018-06-27

287 RAMP1 in Kupffer cells is a critical regulator in immune-mediated hepatitis

Inoue, T.; Ito, Y.; Nishizawa, N.; Eshima, K.; Kojo, K.; Otaka, F.; Betto, T.; Yamane, S.; Tsujikawa, K.; Koizumi, W.; Majima, M.

10.1101/357582 — immunology — Posted on 2018-06-27

288 Human Immunodeficiency Virus Status in Malnourished Children seen at Lagos.

Temiye, E.; Adeniyi, O. F.; Fajolu, I.; Ogbenna, A.; Ladapo, T.; Esezobor, C.; Akinsulie, A.; Mabogunje, C.; not applicable,

10.1101/357608 — epidemiology — Posted on 2018-06-27

289 Non-hierarchical competition and priority effects shape species composition in a complex grassland community

Uricchio, L. H.; Daws, S. C.; Spear, E. R.; Mordecai, E. A.

10.1101/253518 — ecology — Posted on 2018-06-27

290 Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci

Azarian, T.; Mitchell, P.; Georgieva, M.; Thompson, C. M.; Ghoulia, A.; Pollard, A. J.; von Gottberg, A.; du Plessis, M.; Antonio, M.; Kwambana-Adams, B. A.; Clarke, S. C.; Everett, D.; Cornick, J.; Sadowy, E.; Hryniewicz, W.; Skoczynska, A.; Moisi, J.; McGee, L.; Beall, B.; Metcalf, B. J.; Breiman, R. F.; Ho, P.; Reid, R.; O'Brien, K. L.; Gladstone, R.; Bentley, S. D.; Hanage, W. P.

10.1101/314880 — evolutionary biology — Posted on 2018-06-27

291 New Evidence of the Earliest Domestic Dogs in the Americas

Perri, A.; Widga, C.; Lawler, D.; Martin, T.; Loebel, T.; Farnsworth, K.; Kohn, L.; Buenger, B.

10.1101/343574 — paleontology — Posted on 2018-06-27

292 The proto CpG island methylator phenotype of sessile serrated adenoma/polyps

Parker, H. R.; Orjuela, S.; Martinho Oliveira, A.; Cereatti, F.; Sauter, M.; Heinrich, H.; Tanzi, G.; Weber, A.; Komminoth, P.; Vavricka, S.; Albanese, L.; Buffoli, F.; Robinson, M. D.; Marra, G.

10.1101/357178 — cancer biology — Posted on 2018-06-27

293 1/f neural noise is a better predictor of schizophrenia than neural oscillations

Peterson, E. J.; Rosen, B. Q.; Campbell, A. M.; Belger, A.; Voytek, B.

10.1101/113449 — neuroscience — Posted on 2018-06-27

294 The fitness landscape of the codon space across environments

Fragata, I.; Matuszweski, S.; Schmitz, M. A.; Bataillon, T.; Jensen, J. D.; Bank, C.

10.1101/252395 — evolutionary biology — Posted on 2018-06-27

295 Cdt1 modulates kinetochore-microtubule attachment stabilization via an Aurora B kinase-dependent mechanism

Agarwal, S.; Smith, K.; Zhou, Y.; Suzuki, A.; McKenney, R.; Varma, D.

10.1101/194993 — cell biology — Posted on 2018-06-27

296 Measuring NDC80 binding reveals the molecular basis of tension-dependent kinetochore-microtubule attachments

Yoo, T. Y.; Choi, J.-M.; Conway, W.; Yu, C.-H.; Pappu, R. V.; Needleman, D. J.

10.1101/276212 — cell biology — Posted on 2018-06-27

297 Emergent sub-population behavior uncovered with a community dynamic metabolic model of Escherichia coli diauxic growth

Succurro, A.; Segre, D.; Ebenhöh, O.

10.1101/291492 — systems biology — Posted on 2018-06-27

298 Word selectivity in high-level visual cortex and reading skill

Kubota, E. C.; Joo, S. J.; Huber, E.; Yeatman, J. D.

10.1101/296061 — neuroscience — Posted on 2018-06-27

299 Voltage- and Branch-specific Climbing Fiber Responses in Purkinje Cells

Zang, Y.; Dieudonne, S.; De Schutter, E.

10.1101/284026 — neuroscience — Posted on 2018-06-27

300 Insights on protein thermal stability: a graph representation of molecular interactions

Miotto, M.; Olimpieri, P. P.; Di Rienzo, L.; Ambrosetti, F.; Corsi, P.; Lepore, R.; Tartaglia, G. G.; Milanetti, E.

10.1101/354266 — bioinformatics — Posted on 2018-06-27

301 RPA resolves conflicting activities of accessory proteins during reconstitution of Dmc1-mediated meiotic recombination

Chan, Y.-L.; Zhang, A.; Weissman, B. P.; Bishop, D. K.

10.1101/356592 — biochemistry — Posted on 2018-06-27

302 Solution and gas-phase modifiers effect on heme proteins environment and conformational space

Butcher, D.; Miksovska, J.; Ridgeway, M. E.; Park, M. A.; Fernandez-Lima, F.

10.1101/356444 — biochemistry — Posted on 2018-06-27

303 IRES-mediated ribosome repositioning directs translation of a +1 overlapping ORF that enhances viral infection

Kerr, C. H.; Wang, Q. S.; Moon, K.-M.; Keatings, K.; Allan, D. W.; Foster, L. J.; Jan, E.

10.1101/303388 — biochemistry — Posted on 2018-06-27

304 Paralogues of the PXY and ER receptor kinases enforce radial patterning in plant vascular tissue.

Wang, N.; Bagdassarian, K. S.; Doherty, R.; Wang, X.; Kroon, J.; Wang, W.; Jermyn, I.; Turner, S.; Etchells, P.

10.1101/357244 — plant biology — Posted on 2018-06-27

305 Translational regulation of Syngap1 by FMRP modulates NMDAR mediated signalling

Paul, A.; Nawalpuri, B.; Sateesh, S.; Muddashetty, R. S.; Clement, J. P.

10.1101/345058 — neuroscience — Posted on 2018-06-27

306 Gut bacterial tyrosine decarboxylases restrict the bioavailability of levodopa, the primary treatment in Parkinson’s disease

van Kessel, S. P.; Frye, A. K.; El-Gendy, A. O.; Castejon, M.; Keshavarzian, A.; van Dijk, G.; El Aidy, S.

10.1101/356246 — molecular biology — Posted on 2018-06-27

307 Predicting cellular aging following exposure to adversity: Does accumulation, recency, or developmental timing of exposure matter?

Marini, S.; Davis, K. A.; Soare, T. W.; Suderman, M. J.; Simpkin, A. J.; Smith, A. D. A. C.; Wolf, E. J.; Relton, C. L.; Dunn, E. C.

10.1101/355743 — genetics — Posted on 2018-06-27

308 Reduced signal for polygenic adaptation of height in UK Biobank

Berg, J. J.; Harpak, A.; Sinnott-Armstrong, N.; Joergensen, A. M.; Mostafavi, H.; Field, Y.; Boyle, E. A.; Zhang, X.; Racimo, F.; Pritchard, J. K.; Coop, G.

10.1101/354951 — evolutionary biology — Posted on 2018-06-27

309 Evolutionary origin of disease and complexity: A nonequilibrium thermodynamic solution

Koch, L. G.; Britton, S. L.

10.1101/356493 — evolutionary biology — Posted on 2018-06-27

310 Quantification and discovery of sequence determinants of protein per mRNA amount in 29 human tissues

Eraslan, B.; Wang, D.; Gusic, M.; Prokisch, H.; Hallstrom, B. M.; Uhlen, M.; Asplund, A.; Ponten, F.; Wieland, T.; Hopf, T.; Hahne, H.; Kuster, B.; Gagneur, J.

10.1101/353763 — systems biology — Posted on 2018-06-27

311 Seed Genome Hypomethylated Regions Are Enriched In Transcription Factor Genes

Chen, M.; Lin, J.-Y.; Hur, J.; Pelletier, J. M.; Baden, R.; Pellegrini, M.; Harada, J. J.; Goldberg, R.

10.1101/356501 — plant biology — Posted on 2018-06-27

312 A Genome-Wide Association Study Reveals a Novel Regulator of Ovule Number and Fertility in Arabidopsis thaliana

Yuan, J.; Kessler, S. A.

10.1101/356600 — plant biology — Posted on 2018-06-27

313 The Effects of Varying Gravito-inertial Stressors on Grip Strength and Hemodynamic Responses Across Gender

White, O.; Barbiero, M.; Goswami, N.

10.1101/356154 — physiology — Posted on 2018-06-27

314 Exploring the limits of network topology estimation using diffusion-based tractography and tracer studies in the macaque cortex

Shen, K.; Goulas, A.; Grayson, D.; Eusebio, J.; Gati, J. S.; Menon, R. S.; McIntosh, A. R.; Everling, S.

10.1101/356576 — neuroscience — Posted on 2018-06-27

315 Pathway specific drive of cerebellar Golgi cells reveals integrative rules of cortical inhibition

Tabuchi, S.; Gilmer, J. I.; Purba, K.; Person, A. L.

10.1101/356378 — neuroscience — Posted on 2018-06-27

316 An assessment of Causal Inference in visual-inertial traveled distance estimation

de Winkel, K. N.; Diers, D.; Lächele, M.; Bülthoff, H. H.

10.1101/357087 — neuroscience — Posted on 2018-06-27

Abraham, N. M.; Konakamchi, S.; Bhattacharjee, A. S.; Turaev, D.; Vincis, R.; Nunes, D.; Spors, H.; Carleton, A.; Kuner, T.

10.1101/356279 — neuroscience — Posted on 2018-06-27

318 Functional connectivity reveals dissociable ventrolateral prefrontal mechanisms for the control of multilingual word retrieval

Branzi, F. M.; Martin, C. D.; Carreiras, M.; Paz-Alonso, P. M.

10.1101/354829 — neuroscience — Posted on 2018-06-27

319 Increased number and activity of a lateral subpopulation of hypothalamic orexin/hypocretin neurons underlies the expression of an addicted state in rats

James, M.; Stopper, C. M.; Zimmer, B. A.; Koll, N. E.; Bowrey, H. E.; Aston-Jones, G.

10.1101/356220 — neuroscience — Posted on 2018-06-27

320 T cell and peripheral blood parameters define progression of autoimmune disease in the IL-2Rα KO model

Mullins, G. N.; Valentine, K. M.; Al-Kuhlani, M.; Davini, D.; Jensen, K. D. C.; Hoyer, K. K.

10.1101/345512 — immunology — Posted on 2018-06-27

321 Disentangling the process of speciation using machine learning

Smith, M. L.; Carstens, B. C.

10.1101/356345 — evolutionary biology — Posted on 2018-06-27

322 Resource co-limited growth in fluctuating environments

Koussoroplis, A.-M.; Schaelicke, S.; Raatz, M.; Bach, M.; Wacker, A.

10.1101/356980 — ecology — Posted on 2018-06-27

323 Overwhelming presence of non-food vegetation undermines the reliability of NDVI as a surrogate of forage abundance for a large herbivore in a tropical forest habitat

Gautam, H.; Arulmalar, E.; Kulkarni, M.; Vidya, T. N. C.

10.1101/356311 — ecology — Posted on 2018-06-27

324 Exosomes are key regulators of non-cell autonomous communication in senescence

Borghesan, M.; Fafian-Labora, J. A.; Carpintero-Fernandez, P.; Ximenez- Embun, P.; Peinado, H.; Munoz, J.; O'Loghlen, A.

10.1101/356238 — cell biology — Posted on 2018-06-27

325 Mechanosensitive binding of p120-Catenin at cell junctions regulates E-Cadherin turnover and epithelial viscoelasticity

Iyer, K. V.; Piscitello-Gomez, R.; Jülicher, F.; Eaton, S.

10.1101/357186 — biophysics — Posted on 2018-06-27

326 SCMarker: ab initio marker selection for single cell transcriptome profiling

Chen, K.; Wang, F.; Seth, T.; Liang, S.; Navin, N.

10.1101/356634 — bioinformatics — Posted on 2018-06-27

327 The pyriproxyfen metabolite 4’OH- pyriproxyfen disrupts thyroid hormone signaling and enhances Musashi-1 levels in neuroprogenitors

Spirhanzlova, P.; Le Mevel, S.; Wejaphikul, K.; Mughal, B.; Gothie, J.-D.; Sebillot, A.; Butruille, L.; Leemans, M.; Visser, T.; Remaud, S.; Fini, J.-B.; Demeneix, B.

10.1101/352088 — pharmacology and toxicology — Posted on 2018-06-27

328 Maintenance of homeostatic plasticity at the Drosophila neuromuscular junction requires continuous IP3-directed signaling

James, T. D.; Zwiefelhofer, D. J.; Frank, C. A.

10.1101/356436 — neuroscience — Posted on 2018-06-27

329 Roles of motion perception and visual acuity for driving hazard perception

Moharrer, M.; Tang, X.; Luo, G.

10.1101/355958 — neuroscience — Posted on 2018-06-27

330 Disruption of cortical dopaminergic modulation impairs preparatory activity and delays licking initiation

Chen, K.; Vincis, R.; Fontanini, A.

10.1101/337014 — neuroscience — Posted on 2018-06-27

331 LCM-seq reveals unique transcriptional adaption mechanisms of resistant neurons in spinal muscular atrophy

Nichterwitz, S.; Storvall, H.; Nijssen, J.; Comley, L. H.; Allodi, I.; van der Lee, M.; Schweingruber, C.; Deng, Q.; Sandberg, R.; Hedlund, E.

10.1101/356113 — neuroscience — Posted on 2018-06-27

332 Hazard detection with monocular bioptic telescopes in a driving simulator

Tang, X.; Bronstad, M.; Spano, L.; Doherty, A.; Moharrer, M.; Luo, G.; Bowers, A.

10.1101/355925 — neuroscience — Posted on 2018-06-27

333 Attention to a threat-related feature does not interfere with concurrent attentive feature selection

Boylan, M. R.; Kelly, M. N.; Thigpen, N. N.; Keil, A.

10.1101/356402 — neuroscience — Posted on 2018-06-27

334 A histone H4K20 methylation-mediated chromatin compaction threshold ensures genome integrity by limiting DNA replication licensing

Shoaib, M.; Walter, D.; Gillespie, P. J.; Izard, F.; Fahrenkrog, B.; Lleres, D.; Lerdrup, M.; Johansen, J. V.; Hansen, K.; Julien, E.; Blow, J. J.; Sorensen, C. S.

10.1101/350033 — molecular biology — Posted on 2018-06-27

335 Deterministic and stochastic processes influence the reproducibility of microbial community assembly during aerobic granulation

Liebana, R.; Szabo, E.; Persson, F.; Modin, O.; Hermansson, M.; Wilen, B.-M.

10.1101/356303 — microbiology — Posted on 2018-06-27

336 Combined quantification of intracellular (phospho-)proteins and transcriptomics from fixed single cells.

Gerlach, J. P.; van Buggenum, J. A. G.; Tanis, S. E. J.; Hogeweg, M.; Heuts, B. M. H.; Muraro, M. J.; Elze, L.; Rivello, F.; Rakszewska, A.; van Oudenaarden, A.; Huck, W. T. S.; Stunnenberg, H. G.; Mulder, K. W.

10.1101/356329 — genomics — Posted on 2018-06-27

337 Up, down, and out: next generation libraries for genome-wide CRISPRa, CRISPRi, and CRISPR-Cas9 knockout genetic screens

Sanson, K. R.; Hanna, R. E.; Hegde, M.; Donovan, K. F.; Strand, C.; Sullender, M. E.; Vaimberg, E. W.; Goodale, A.; Root, D. E.; Piccioni, F.; Doench, J. G.

10.1101/356626 — genomics — Posted on 2018-06-27

338 HSP90 buffers newly induced mutations in massively mutated plant lines

Mason, G. A.; Carlson, K. D.; Press, M. O.; Bubb, K. L.; Queitsch, C.

10.1101/355735 — genetics — Posted on 2018-06-27

339 The filtering metaphor revisited: competition and environment jointly structure invasibility and coexistence

Germain, R.; Mayfield, M. M.; Gilbert, B.

10.1101/356360 — ecology — Posted on 2018-06-27

340 Excitable dynamics of Ras triggers self-organized PIP3 signaling for spontaneous cell migration

Fukushima, S.; Matsuoka, S.; Ueda, M.

10.1101/356105 — cell biology — Posted on 2018-06-27

341 Imprint of parity and age at first birth on the genomic landscape of subsequent breast cancer

Nguyen, B.; Venet, D.; Lambertini, M.; Desmedt, C.; Salgado, R.; Horlings, H.; Rothe, F.; Sotiriou, C.

10.1101/351205 — cancer biology — Posted on 2018-06-27

342 PReMS: Parallel Regularised Regression Model Search for sparse bio-signature discovery

Hoggart, C. J.

10.1101/355479 — bioinformatics — Posted on 2018-06-27

343 Supervised learning on synthetic data for reverse engineering gene regulatory networks from experimental time-series

Ganscha, S.; Fortuin, V.; Horn, M.; Arvaniti, E.; Claassen, M.

10.1101/356477 — systems biology — Posted on 2018-06-27

344 A deep proteome and transcriptome abundance atlas of 29 healthy human tissues

Wang, D.; Eraslan, B.; Wieland, T.; Hallstrom, B. M.; Hopf, T.; Zolg, D. P.; Zecha, J.; Asplund, A.; Li, L.-h.; Meng, C.; Frejno, M.; Schmidt, T.; Schnatbaum, K.; Wilhelm, M.; Ponten, F.; Uhlen, M.; Gagneur, J.; Hahne, H.; Kuster, B.

10.1101/357137 — systems biology — Posted on 2018-06-27

345 Dopaminergic genes are associated with both directed and random exploration

Gershman, S.; Greshake Tzovaras, B.

10.1101/357251 — neuroscience — Posted on 2018-06-27

346 The Sec1/Munc18 (SM) protein Vps45 is involved in iron uptake, mitochondrial function and virulence in the pathogenic fungus Cryptococcus neoformans

Caza, M.; Hu, G.; Nielson, E. D.; Cho, M.; Jung, W. H.; Kronstad, J. W.

10.1101/356535 — microbiology — Posted on 2018-06-27

347 Stoichiometry and Mobility Switching of a Morphogenetic Protein in Live Differentiating Cells

Wollman, A. J.; Muchova, K.; Chromikova, Z.; Wilkinson, A. J.; Barak, I.; Leake, M.

10.1101/356733 — microbiology — Posted on 2018-06-27

348 Identification of evolutionarily conserved virulence factor by selective pressure analysis of Streptococcus pneumoniae

Yamaguchi, M.; Goto, K.; Hirose, Y.; Yamaguchi, Y.; Sumitomo, T.; Nakata, M.; Nakano, K.; Kawabata, S.

10.1101/356212 — microbiology — Posted on 2018-06-27

349 Insights into the molecular basis of wooden breast based on comparative analysis of fast- and slow-growth broilers

Hubert, S. M.; Williams, T. J.; Athrey, G.

10.1101/356683 — genomics — Posted on 2018-06-27

350 Using human sequencing to guide craniofacial research.

Liegel, R.; Finnerty, E.; Ward, L.; DiStasio, A.; Hufnagel, R.; Saal, H.; Prows, C.; Stottmann, R.; Stottmann, R.

10.1101/356717 — genetics — Posted on 2018-06-27

351 Inter-basin water transfers and the expansion of aquatic invasive species

Gallardo, B.; Aldridge, D. C.

10.1101/356923 — ecology — Posted on 2018-06-27

352 Single molecule imaging reveals the concerted release of myosin from regulated thin filaments

Inchingolo, A. V.; Mihailescu, M.; Dai, H.; Kad, N. M.

10.1101/357202 — biophysics — Posted on 2018-06-27

353 EnsembleCNV: An ensemble machine learning algorithm to identify and genotype copy number variation using SNP array data

Zhang, Z.; Cheng, H.; Hong, X.; Di Narzo, A. F.; Franzen, O.; Peng, S.; Ruusalepp, A.; Kovacic, J. C.; Bjorkegren, J. L.; Wang, X.; Hao, K.

10.1101/356667 — bioinformatics — Posted on 2018-06-27

354 MALARIA and BURKITT′S LYMPHOMA: An IN SILICO ANALYSIS of GENE EXPRESSION LINKS BETWEEN MALARIA and BURKITT’S LYMPHOMA and POTENTIAL ANTICANCER ACTIVITY of ARTEMISININ DERIVATIVES

Elsayed, I.; Amin, M.; Mahdi, M.; Wang, X.; Rizig, M.

10.1101/356782 — bioinformatics — Posted on 2018-06-27

355 Heading Perception Depends on Time-Varying Evolution of Optic Flow

Burlingham, C. S.; Heeger, D. J.

10.1101/356758 — neuroscience — Posted on 2018-06-27

356 Deletion of class II ARF causes essential tremors through Nav1.6 traffic impairment

Hosoi, N.; Shibasaki, K.; Hosono, M.; Konno, A.; Shinoda, Y.; Kiyonari, H.; Inoue, K.; Aizawa, S.; Muramatsu, S.; Ishizaki, Y.; Hirai, H.; Furuichi, T.; Sadakata, T.

10.1101/357160 — neuroscience — Posted on 2018-06-27

357 Retrospective whole-genome sequencing analysis distinguished PFGE and drug resistance matched retail meat and clinical Salmonella isolates

Keefer, A. B.; Xiaoli, L.; M'ikanatha, N. M.; Yao, K.; Hoffmann, M.; Dudley, E. G.

10.1101/356857 — microbiology — Posted on 2018-06-27

358 Megaphage infect Prevotella and variants are widespread in gut microbiomes

Devoto, A. E.; Santini, J. M.; Olm, M. R.; Anantharaman, K.; Munk, P.; Tung, J.; Archie, E. A.; Turnbaugh, P. J.; Seed, K. D.; Blekhman, R.; Aarestrup, F. M.; Thomas, B. C.; Banfield, J. F.

10.1101/356790 — microbiology — Posted on 2018-06-27

359 Identification and characterization of a phase-variable element that regulates the autotransporter UpaE in uropathogenic Escherichia coli

WELCH, R. A.; Goh, K. G.; Atruksang, T. S.; Schwartz, K.; Schembri, M. A.; Battaglioli, E. J.

10.1101/356865 — microbiology — Posted on 2018-06-27

360 Resolving challenges in quantitative modeling of microbial community dynamics

Hart, S. F. M.; Mi, H.; Green, R.; Xie, L.; Pineda, J. M. B.; Momeni, B.; Shou, W.

10.1101/356519 — microbiology — Posted on 2018-06-27

361 Evidence that recurrent Group A streptococcus tonsillitis is animmunosusceptibility disease involving antibody deficiency and aberrant Tfh cells

Dan, J. M.; Havenar-Daughton, C.; Kendric, K.; Kaushik, K.; Rosales, S.; Anderson, E.; LaRock, C.; Vijayanand, P.; Seumois, G.; Layfield, D.; Cutress, R.; Ottensmeier, C.; Lindestam Arlehamn, C.; Sette, A.; Nizet, V.; Bothwell, M.; Brigger, M.; Crotty, S.

10.1101/356741 — immunology — Posted on 2018-06-27

362 Genome-wide mapping reveals conserved and diverged R-loop activities in the unusual genetic landscape of the African trypanosome genome

Briggs, E.; Hamilton, G.; Crouch, K.; Lapsley, C.; McCulloch, R.

10.1101/357020 — genomics — Posted on 2018-06-27

363 Robust detection of tandem repeat expansions from long DNA reads

Mitsuhashi, S.; Frith, M. C.; Mizuguchi, T.; Miyatake, S.; Toyota, T.; Adachi, H.; Oma, Y.; Kino, Y.; Mitsuhashi, H.; Matsumoto, N.

10.1101/356931 — genetics — Posted on 2018-06-27

364 Incomplete penetrance for isolated congenital asplenia in humans with mutations in translated and untranslated RPSA exons

Bolze, A.; Boisson, B.; Bosch, B.; Antipenko, A.; Bouaziz, M.; Sackstein, P.; Chaker-Margot, M.; Barlogis, V.; Briggs, T.; Colino, E.; Elmore, A. C.; Fisher, A.; Genel, F.; Hewlett, A.; Jedidi, M.; Kelecic, J.; Krüger, R.; Ku, C.-L.; Kumararatne, D.; Lefevre-Utile, A.; Loughlin, S.; Mahlaoui, N.; Markus, S.; Garcia, J.-M.; Nizon, M.; Oleastro, M.; Pac, M.; Picard, C.; Pollard, A. J.; Rodriguez-Gallego, J.-C.; Thomas, C.; Von Bernuth, H.; Worth, A.; Meyts, I.; Risolino, M.; Selleri, L.; Puel, A.; Klinge, S.; Abel, L.; Casanova, J.-L.

10.1101/356832 — genetics — Posted on 2018-06-27

365 Arthropod Abundance Associated with the Natural Resources Conservation Service: Implications for Greater Sage-Grouse Management.

Goosey, H.

10.1101/356451 — ecology — Posted on 2018-06-27

366 Recommendations to address uncertainties in environmental risk assessment using toxicokinetics-toxicodynamics models

Baudrot, V.; Charles, S.

10.1101/356469 — ecology — Posted on 2018-06-27

367 Vimentin filaments interact with the mitotic cortex allowing normal cell division

Duarte, S.; Viedma-Poyatos, A.; Navarro-Carrasco, E.; Martinez, A. E.; Pajares, M. A.; Perez-Sala, D.

10.1101/356642 — cell biology — Posted on 2018-06-27

368 Difference in accumulation pattern of the allergens within the same PR10 family in transgenic rice

Takaiwa, F.; Ogo, Y.; Wakasa, Y.

10.1101/356972 — cell biology — Posted on 2018-06-27

369 Simulation-based approaches to characterize the effect of sequencing depth on the quantity and quality of metagenome-assembled genomes

Royalty, T. M.; Steen, A. D.

10.1101/356840 — bioinformatics — Posted on 2018-06-27

370 Amyloid β oligomers constrict human capillaries in Alzheimer’s disease via signalling to pericytes

Nortley, R.; Mishra, A.; Jaunmuktane, Z.; Kyrargyri, V.; Madry, C.; Gong, H.; Richard-Loendt, A.; Brandner, S.; Sethi, H.; Attwell, D.

10.1101/357095 — neuroscience — Posted on 2018-06-27

371 Reward signaling in a recurrent circuit of dopaminergic neurons and Kenyon cells

Lyutova, R.; Pfeuffer, M.; Segebarth, D.; Habenstein, J.; Selcho, M.; Wegener, C.; Thum, A.; Pauls, D.

10.1101/357145 — neuroscience — Posted on 2018-06-27

372 Dynamic m6A methylation facilitates mRNA triaging to stress granules

Anders, M.; Chelysheva, I.; Goebel, I.; Trenkner, T.; Zhou, J.; Mao, Y.; Verzini, S.; Qian, S.-B.; Ignatova, Z.

10.1101/357012 — molecular biology — Posted on 2018-06-27

373 Decrease in Microbial Diversity Along a Pollution Gradient in Citarum River Sediment

de Jong, A.; in 't Zandt, M.; Fiandi, L.; van der Zaan, B.; Geerling, G.; Roosmini, D.; Luke, C.; Ariesyady, H. D.; Jetten, M.

10.1101/357111 — microbiology — Posted on 2018-06-27

374 Think zinc: Role of zinc poisoning in the intraphagosomal killing of bacteria by the amoeba Dictyostelium

Barisch, C.; Kalinina, V.; Lefrancois, L. H.; Appiah, J.; Soldati, T.

10.1101/356949 — cell biology — Posted on 2018-06-27

375 The proto CpG island methylator phenotype of sessile serrated adenoma/polyps

Parker, H. R.; Orjuela, S.; Martinho Oliveira, A.; Cereatti, F.; Sauter, M.; Heinrich, H.; Tanzi, G.; Weber, A.; Komminoth, P.; Vavricka, S.; Albanese, L.; Buffoli, F.; Robinson, M. D.; Marra, G.

10.1101/357178 — cancer biology — Posted on 2018-06-27

376 MODE for detecting and estimating genetic causal variants

Sundar, V.; Fan, C.-C.; Holland, D.; Dale, A.

10.1101/357228 — bioinformatics — Posted on 2018-06-27

377 Integral Gene Drives: an \"operating system\" for population replacement

Nash, A.; Mignini Urdaneta, G.; Beaghton, A. K.; Hoermann, A.; Papathanos, F. A. A.; Christophides, G.; Windbichler, N.

10.1101/356998 — synthetic biology — Posted on 2018-06-27

378 On the importance of scales when studying adaptive evolution

Perrier, C.; Charmantier, A.

10.1101/269175 — evolutionary biology — Posted on 2018-06-27

379 Auditory motion does not modulate spiking activity in the middle temporal and medial superior temporal visual areas

Chaplin, T. A.; Allitt, B. J.; Hagan, M. A.; Rosa, M. G.; Rajan, R.; Lui, L. L.

10.1101/204529 — neuroscience — Posted on 2018-06-27

380 Signatures of the evolution of parthenogenesis and cryptobiosis in panagrolaimid nematodes

Schiffer, P. H.; Danchin, E.; Burnell, A. M.; Schiffer, A.-M.; Creevey, C.; Wong, S.; Dix, I.; O'Mahony, G.; Culleton, B. A.; Rancurel, C.; Stier, G.; Martinez-Salazar, E. A.; Marconi, A.; Trivedi, U.; Kroiher, M.; Thorne, M. A. S.; Schierenberg, E.; Wiehe, T.; Blaxter, M.

10.1101/159152 — evolutionary biology — Posted on 2018-06-27

381 MateSim: Monte Carlo simulation for the generation of mating tables

Carvajal-Rodriguez, A.

10.1101/239178 — evolutionary biology — Posted on 2018-06-27

382 Reward learning over weeks versus minutes increases the neural representation of value in the human brain

Wimmer, G. E.; Li, J. K.; Gorgolewski, K. J.; Poldrack, R. A.

10.1101/158964 — neuroscience — Posted on 2018-06-27

383 Household cockroaches carry CTX-M-15, OXA-48 and NDM-1, and share beta-lactam resistance determinants with humans

Obeng-Nkrumah, N.; Labi, A.-K.; Blankson, H.; Awuah-Mensah, G.; Oduro-Mensah, D.; Anum, J.; Teye, J.; Kwashie, S.; Bako, E.; Ayeh-Kumi, P. F.; Asmah, R.

10.1101/357079 — microbiology — Posted on 2018-06-27

384 Benzo(a)pyrene (BP) and its adverse effects on male testies

liu, w.; Gu, H. A.

10.1101/357038 — pathology — Posted on 2018-06-27

385 Monitoring of language selection errors in switching: Not all about conflict

Zheng, X.; Roelofs, A.; Farquhar, J.; Lemhöfer, K.

10.1101/357061 — neuroscience — Posted on 2018-06-27

386 G-quadruplex stabilization in the ions and maltose transporters inhibit Salmonella enterica growth and virulence.

jain, N.; Mishra, S. K.; Shankar, U.; Tawani, A.; Jaiswal, A.; Sharma, T. K.; Kodgire, P.; Kumar, A.

10.1101/357046 — genomics — Posted on 2018-06-27

387 Sinking rates and export flux of transparent exopolymer particles (TEPs) in a eutrophic coastal sea: a case study in the Changjiang (Yangtze River) estuary

Guo, S.; Sun, J.

10.1101/357053 — ecology — Posted on 2018-06-27

388 Direct Observation of Topoisomerase IA Gate Dynamics

Mills, M.; Tse-Dinh, Y.-C.; Neuman, K. C.

10.1101/356659 — biophysics — Posted on 2018-06-26

389 Ras inhibition by trametinib treatment in Drosophila attenuates gut pathology in females and extends lifespan in both sexes

Regan, J. C.; Lu, Y.-X.; Bolukbasi, E.; Khericha, M.; Partridge, L.

10.1101/356295 — physiology — Posted on 2018-06-26

390 Subjugation of TGFβ Signaling by Human Papilloma Virus in Head and Neck Squamous Cell Carcinoma Shifts DNA Repair from Homologous Recombination to Alternative End-Joining

Liu, Q.; Ma, L.; Jones, T.; Palomero, L.; Pujana, M. A.; Martinez-Ruiz, H.; Ha, P.; Murnane, J.; Cuartas, I.; Seoane, J.; Baumann, M.; Linge, A.; Barcellos-Hoff, M. H.

10.1101/353441 — cancer biology — Posted on 2018-06-26

391 Developmental-stage-specific proliferation and retinoblastoma genesis in RB-deficient human but not mouse cone precursors

Singh, H. P.; Wang, S.; Stachelek, K.; Lee, S.; Reid, M. W.; Thornton, M. E.; Craft, C. M.; Grubbs, B. H.; Cobrinik, D.

10.1101/356527 — cancer biology — Posted on 2018-06-26

392 DNA methylation signature of smoking in lung cancer is enriched for exposure signatures in newborn and adult blood.

Bakulski, K. M.; Dou, J.; Lin, N.; London, S.; Colacino, J.

10.1101/356485 — cancer biology — Posted on 2018-06-26

393 SPHIRE-crYOLO: A fast and well-centering automated particle picker for cryo-EM

Wagner, T.; Merino, F.; Stabrin, M.; Moriya, T.; Gatsogiannis, C.; Raunser, S.

10.1101/356584 — biophysics — Posted on 2018-06-26

394 A major locus for ivermectin resistance in a parasitic nematode

Doyle, S. R.; Illingworth, C. J. R.; Laing, R.; Bartley, D. J.; Redman, E.; Martinelli, A.; Holroyd, N.; Morrison, A. A.; Rezansoff, A.; Tracey, A.; Devaney, E.; Berriman, M.; Sargison, N.; Cotton, J. A.; Gilleard, J. S.

10.1101/298901 — genomics — Posted on 2018-06-26

395 Estimating the proportion of bystander selection for antibiotic resistance among potentially pathogenic bacterial flora

Tedijanto, C.; Olesen, S.; Grad, Y.; Lipsitch, M.

10.1101/288704 — epidemiology — Posted on 2018-06-26

396 Mutational likeliness and entropy help to identify driver mutations and their functional role in cancer

Mattiuz, G.; Di Giorgio, S.; Tofani, L.; Frandi, A.; Donati, F.; Brilli, M.; Conticello, S. G.

10.1101/354324 — cancer biology — Posted on 2018-06-26

397 Barnaba: Software for Analysis of Nucleic Acids Structures and Trajectories

Bottaro, S.; Bussi, G.; Pinamonti, G.; Reisser, S.; Boomsma, W.; Lindorff-Larsen, K.

10.1101/345678 — bioinformatics — Posted on 2018-06-26

398 Real Time Normalization of Fast Photochemical Oxidation of Proteins Experiments by Inline Adenine Radical Dosimetry

Sharp, J. S.; Misra, S. K.; Persoff, J. J.; Egan, R. W.; Weinberger, S. R.

10.1101/352385 — biochemistry — Posted on 2018-06-26

399 Surprise About Sensory Event Timing Drives Cortical Transients in the Beta Frequency Band

Meindertsma, T.; Kloosterman, N. A.; Engel, A. K.; Wagenmakers, E.-J.; Donner, T. H.

10.1101/254060 — neuroscience — Posted on 2018-06-26

400 Comparative genomics analyses indicate differential methylated amine utilisation trait within the member of the genus Gemmobacter

Kröber, E.; Spurgin, L.; Wischer, D.; Kumaresan, D.

10.1101/356014 — microbiology — Posted on 2018-06-26

401 Susceptibility of European freshwater fish to climate change: species profiling based on life-history and environmental characteristics

Jaric, I.; Lennox, R. J.; Kalinkat, G.; Cvijanovic, G.; Radinger, J.

10.1101/355875 — ecology — Posted on 2018-06-26

402 Information sharing for a coordination game in fluctuating environments

Paarporn, K.; Eksin, C.; Weitz, J. S.

10.1101/268268 — animal behavior and cognition — Posted on 2018-06-26

403 Harnessing formal concepts of biological mechanism to analyze human disease

Darden, L.; Kundu, K.; Pal, L. R.; Moult, J.

10.1101/350371 — systems biology — Posted on 2018-06-26

404 Neural Responses in Dorsal Prefrontal Cortex Reflect Proactive Interference during an Auditory Reversal Task

Francis, N. A.; Radtke-Schuller, S.; Fritz, J. B.; Shamma, S. A.

10.1101/354936 — neuroscience — Posted on 2018-06-26

405 Single-trial characterization of neural rhythms: potentials and challenges

Kosciessa, J. Q.; Grandy, T. H.; Garrett, D. D.; Werkle-Bergner, M.

10.1101/356089 — neuroscience — Posted on 2018-06-26

406 ΦCrAss001, a member of the most abundant bacteriophage family in the human gut, infects Bacteroides

Shkoporov, A.; Khokhlova, E. V.; Fitzgerald, C. B.; Stockdale, S. R.; Draper, L. A.; Ross, R. P.; Hill, C.

10.1101/354837 — microbiology — Posted on 2018-06-26

407 Experimental infection characteristics of Bordetella pertussis via aerosol challenge on rhesus macaques

MOU, D.; Luo, P.; LIANG, J.; JI, Q.; Wang, L.; GAO, N.; GU, Q.; Wei, C.; MA, Y.; LI, J.; LIU, S.; SHI, L.; Sun, M.

10.1101/356022 — microbiology — Posted on 2018-06-26

408 Electrophysiological correlates of hyperoxia during resting-state EEG in awake human subjects

Vuong, W.; Kizuk, S. A. D.; MacLean, J.; Dickson, C. T.; Mathewson, K.

10.1101/355941 — neuroscience — Posted on 2018-06-26

409 Translational regulation of Syngap1 by FMRP modulates NMDAR mediated signalling

Paul, A.; Nawalpuri, B.; Sateesh, S.; Muddashetty, R. S.; Clement, J. P.

10.1101/345058 — neuroscience — Posted on 2018-06-26

410 Orchestration of Drosophila post-feeding physiology and behavior by the neuropeptide leucokinin

Zandawala, M.; Yurgel, M. E.; Liao, S.; Texada, M. J.; Rewitz, K. F.; Keene, A. C.; Nassel, D. R.

10.1101/355107 — neuroscience — Posted on 2018-06-26

411 Laminar profile of task-related plasticity in ferret primary auditory cortex

Francis, N.; Elgueda, D.; Englitz, B.; Fritz, J.; Shamma, S.

10.1101/354910 — neuroscience — Posted on 2018-06-26

412 Two point mutations in the Hantaan virus glycoproteins afford the generation of a highly infectious recombinant vesicular stomatitis virus vector

Slough, M. M.; Chandran, K.; Jangra, R. K.

10.1101/356055 — microbiology — Posted on 2018-06-26

413 Efficient whole genome haplotyping and high-throughput single molecule phasing with barcode-linked reads

Redin, D.; Frick, T.; Aghelpasand, H.; Theland, J.; Kaller, M.; Borgstrom, E.; Olsen, R.-A.; Ahmadian, A.

10.1101/356121 — genomics — Posted on 2018-06-26

414 Mutation rate variability as a driving force in adaptive evolution

Engelhardt, D.; Shakhnovich, E.

10.1101/354712 — evolutionary biology — Posted on 2018-06-26

415 Critical transitions in malaria transmission models are consistently generated by superinfection

alonso, d.; Pascual, M.; Dobson, A.

10.1101/355420 — epidemiology — Posted on 2018-06-26

416 Concurrent Spatiotemporal Daily Land Use Regression Modeling and Missing Data Imputation of Fine Particulate Matter Using Distributed Space Time Expectation Maximization

Taghavi-Shahri, S. M.; Fasso, A.; Mahaki, B.; Amini, H.

10.1101/354852 — epidemiology — Posted on 2018-06-26

417 Robustness of local control strategies under modelling uncertainties: the 2004 avian infuenza H5N1 outbreak in Thailand

Retkute, R.; Jewell, C. P.; Van Boeckel, T. P.; Zhang, G.; Xiao, X.; Thanapongtharm, W.; Keeling, M.; Gilbert, M.; Tildesley, M. J.

10.1101/355024 — epidemiology — Posted on 2018-06-26

418 The multifurcating skyline plot

Hoscheit, P.; Pybus, O.

10.1101/356097 — bioinformatics — Posted on 2018-06-26

419 Bats adjust temporal features of echolocation calls but not those of communication calls in response to traffic noise

Song, S.; Lin, A.; Jiang, T.; Zhao, X.; Metzner, W.; Feng, J.

10.1101/354845 — animal behavior and cognition — Posted on 2018-06-26

420 Career Choice, Gender, and Mentor Impact: Results of the U.S. National Postdoc Survey

McConnell, S. C.; Westerman, E. L.; Pierre, J. F.; Heckler, E. J.; Schwartz, N. B.

10.1101/355511 — scientific communication and education — Posted on 2018-06-26

421 Evidence for time division multiplexing: Single neurons may encode simultaneous stimuli by switching between activity patterns

CARUSO, V. C.; Mohl, J. T.; Glynn, C.; Lee, J.; Willett, S. M.; Zaman, A.; Ebihara, A. F.; Estrada, R.; Freiwald, W.; Tokdar, S. T.; Groh, J. M.

10.1101/107185 — neuroscience — Posted on 2018-06-26

422 Evidence that recurrent circuits are critical to the ventral stream’s execution of core object recognition behavior

Kar, K.; Kubilius, J.; Schmidt, K. M.; Issa, E. B.; DiCarlo, J. J.

10.1101/354753 — neuroscience — Posted on 2018-06-26

423 Auditory attention reduced ear-canal noise in humans, but not through medial olivocochlear efferent inhibition: Implications for measuring otoacoustic emissions during behavioral task performance

Francis, N. A.; Zhao, W.; Guinan, J.

10.1101/354902 — neuroscience — Posted on 2018-06-26

424 Evolutionary trade-offs between unicellularity and multicellularity in budding yeast

Kuzdzal-Fick, J.; Chen, L.; Balazsi, G.

10.1101/347609 — evolutionary biology — Posted on 2018-06-26

425 Reduced signal for polygenic adaptation of height in UK Biobank

Berg, J. J.; Harpak, A.; Sinnott-Armstrong, N.; Joergensen, A. M.; Mostafavi, H.; Field, Y.; Boyle, E. A.; Zhang, X.; Racimo, F.; Pritchard, J. K.; Coop, G.

10.1101/354951 — evolutionary biology — Posted on 2018-06-26

426 Rapid alignment-free phylogenetic identification of metagenomic sequences

Linard, B.; Swenson, K.; Pardi, F.

10.1101/328740 — bioinformatics — Posted on 2018-06-26

427 A regulatory-sequence classifier with a neural network for genomic information processing

Onimaru, K.; Nishimura, O.; Kuraku, S.

10.1101/355974 — bioinformatics — Posted on 2018-06-26

428 Identification of two principal amyloid-driving segments in variable domains of Ig light chains in AL amyloidosis

Brumshtein, B.; Esswein, S.; Sawaya, M. R.; Ly, A. T.; Landau, M.; Eisenberg, D. S.

10.1101/354571 — biochemistry — Posted on 2018-06-26

429 In silico mouse study identifies tumor growth kinetics as biomarkers for the outcome of anti-angiogenic treatment

Wu, Q.; Arnheim, A. D.; Finley, S. D.

10.1101/300566 — systems biology — Posted on 2018-06-26

430 Inositol 1,4,5-trisphosphate receptor type2-independent Ca2+ release from the endoplasmic reticulum in astrocytes

Okubo, Y.; Kanemaru, K.; Suzuki, J.; Kobayashi, K.; Hirose, K.; Iino, M.

10.1101/321042 — neuroscience — Posted on 2018-06-26

431 Population-level HIV incidence estimates using a combination of synthetic cohort and recency biomarker approaches in KwaZulu-Natal, South Africa

Grebe, E.; Welte, A.; Johnson, L. F.; van Cutsem, G.; Puren, A.; Ellman, T.; Etard, J.-F.; Consortium for the Evaluation and Performance of HIV Incidence Assays, ; Huerga, H.

10.1101/306464 — epidemiology — Posted on 2018-06-26

432 Poly-Target Selection Identifies Broad-Spectrum RNA Aptamers

Alam, K. K.; Chang, J. L.; Lange, M. J.; Nguyen, P. D. M.; Sawyer, A. W.; Burke, D. H.

10.1101/302745 — molecular biology — Posted on 2018-06-26

433 DoubletFinder: Doublet detection in single-cell RNA sequencing data using artificial nearest neighbors

McGinnis, C. S.; Murrow, L. M.; Gartner, Z. J.

10.1101/352484 — bioinformatics — Posted on 2018-06-26

434 Neural representation of social expectations during interpersonal decisions

Diaz-Gutierrez, P.; Arco, J. E.; Alguacil, S.; Gonzalez-Garcia, C.; Ruz, M.

10.1101/355115 — neuroscience — Posted on 2018-06-26

435 PReMS: Parallel Regularised Regression Model Search for sparse bio-signature discovery

Hoggart, C. J.

10.1101/355479 — bioinformatics — Posted on 2018-06-26

436 Template-assisted synthesis of adenine-mutagenized cDNA by a retroelement protein complex

Handa, S.; Jiang, Y.; Tao, S.; Foreman, R.; Schinazi, R.; Miller, J. F.; Ghosh, P.

10.1101/344556 — biochemistry — Posted on 2018-06-26

437 Observing action sequences elicits sequence-specific neural representations in frontoparietal brain regions

Apshvalka, D.; Cross, E.; Ramsey, R.

10.1101/356253 — neuroscience — Posted on 2018-06-26

438 DNA-uptake pilus of Vibrio cholerae capable of kin-discriminated auto-aggregation

Adams, D. W.; Stutzmann, S.; Stoudmann, C.; Blokesch, M.

10.1101/354878 — microbiology — Posted on 2018-06-26

439 The unsolved problem of otitis media in indigenous populations: A systematic review of upper respiratory and middle ear microbiota in indigenous children

Coleman, A.; Wood, A.; Bialasiewicz, S.; Ware, R. S.; Marsh, R. L.; Cervin, A.

10.1101/355982 — microbiology — Posted on 2018-06-26

440 Extensive Expansion of the Speedy gene Family in Homininae and Functional Differentiation in Humans

Wang, L.; Wang, H.; Wang, H.; Zhao, Y.; Liu, X.; Wong, G.; Ye, Q.; Xia, X.; Gao, G. F.; Gao, S.

10.1101/354886 — evolutionary biology — Posted on 2018-06-26

441 ATP synthase K+- and H+-flux drive ATP synthesis and enable mitochondrial K+-uniporter function

Juhaszova, M.; Kobrinsky, E.; Zorov, D. B.; Nuss, B.; Yaniv, Y.; Fishbein, K. W.; de Cabo, R.; Montoliu, L.; Gabelli, S. B.; Aon, M. A.; Cortassa, S.; Sollott, S. J.

10.1101/355776 — biophysics — Posted on 2018-06-26

442 In-depth investigation of the species problem and taxonomic status of marbled crayfish, the first asexual decapod crustacean

Vogt, G.; Dorn, N. J.; Pfeiffer, M.; Lukhaup, C.; Williams, B. W.; Schulz, R.; Schrimpf, A.

10.1101/356170 — zoology — Posted on 2018-06-26

443 The Impact of Grant Funding on the Publication Activity of Awarded Applicants: A Systematic Review of Comparative Studies and Meta-analytical Estimates

Saygitov, R.

10.1101/354662 — scientific communication and education — Posted on 2018-06-26

444 Heliorhodopsins are absent in diderm (Gram-negative) bacteria: Some thoughts and possible implications for activity

Flores-Uribe, J.; Hevroni, G.; Ghai, R.; Pushkarev, A.; Inoue, K.; Kandori, H.; Beja, O.

10.1101/356287 — microbiology — Posted on 2018-06-26

445 Identification of candidate genes controlling black seed coat and pod tip color in cowpea (Vigna unguiculata L. Walp)

Herniter, I. A.; Munoz-Amatriain, M.; Lo, S.; Guo, Y.-N.; Close, T. J.

10.1101/355586 — genetics — Posted on 2018-06-26

446 Architectural traits constrain the evolution of unisexual flowers and sexual segregation within inflorescences: an interspecific approach

Torices, R.; Afonso, A.; Anderberg, A. A.; Gomez, J. M.; Mendez, M.

10.1101/356147 — evolutionary biology — Posted on 2018-06-26

447 Gut segments outweigh the diet in shaping the intestinal microbiome composition in grass carp Ctenopharyngodon idellus

Wu, S.; Feng, W.; Zhang, J.; Jakovli?, I.; Zou, H.; Li, W.; Li, M.; Wang, G.

10.1101/356030 — ecology — Posted on 2018-06-26

448 Bacteria-to-human protein networks reveal origins of endogenous DNA damage

Xia, J.; Chiu, L.-Y.; Nehring, R. B.; Bravo Nunez, M. A.; Mei, Q.; Perez, M.; Zhai, Y.; Fitzgerald, D. M.; Pribis, J. P.; Wang, Y.; Hu, C. W.; Powell, R. T.; LaBonte, S. A.; Jalali, A.; Matadamas Guzman, M. L.; Lentzsch, A. M.; Szafran, A. T.; Joshi, M. C.; Richters, M.; Gibson, J. L.; Frisch, R. L.; Hastings, P. J.; Bates, D.; Queitsch, C.; Hilsenbeck, S. G.; Coarfa, C.; Hu, J. C.; Siegele, D. A.; Scott, K. L.; Liang, H.; Mancini, M. A.; Herman, C.; Miller, K. M.; Rosenberg, S. M.

10.1101/354589 — cancer biology — Posted on 2018-06-26

449 Temporal ordering of input modulates connectivity formation in a developmental neuronal network model of the cortex

Hartley, C.; Farmer, S.; Berthouze, L.

10.1101/355800 — neuroscience — Posted on 2018-06-26

450 Antioxidant Gene Expression in Vocal Hindbrain of a Teleost Fish

Liao, C.; Feng, N. Y.; Bass, A. H.

10.1101/354977 — neuroscience — Posted on 2018-06-26

451 Dietary Bovine Milk Exosomes Elicit Changes in Microbial Communities in C57BL/6 Mice

Zhou, F.; Paz, H. A.; Shu, J.; Sadri, M.; CUI, J.; Fernando, S.; ZEMPLENI, J.

10.1101/356048 — microbiology — Posted on 2018-06-26

452 Meta-analysis of 1,200 transcriptomic profiles identifies a prognostic model for pancreatic ductal adenocarcinoma

10.1101/355602 — genomics — Posted on 2018-06-26

453 genomeview - an extensible python-based genomics visualization engine

Spies, N.; Zook, J. M.; Sidow, A.; Salit, M.

10.1101/355636 — genomics — Posted on 2018-06-26

454 Gene-regulatory independent functions for insect DNA methylation

Bewick, A. J.; Sanchez, Z.; Mckinney, E. C.; Moore, A. J.; Moore, P. J.; Schmitz, R. J.

10.1101/355669 — genetics — Posted on 2018-06-26

455 Non-synonymous to synonymous substitutions suggest that orthologs tend to keep their functions, while paralogs are a source of functional novelty

Esposito, M.; Moreno-Hagelsieb, G.

10.1101/354704 — evolutionary biology — Posted on 2018-06-26

456 A Fasciclin 2 functional switch controls organ size in Drosophila

Velasquez, E.; Gomez-Sanchez, J.; Donier, E.; Grijota-Martinez, C.; Cabedo, H.; Garcia-Alonso, L. A.

10.1101/356196 — developmental biology — Posted on 2018-06-26

457 Bulk Tissue Cell Type Deconvolution with Multi-Subject Single-Cell Expression Reference

Wang, X.; Park, J.; Susztak, K.; Zhang, N.; Li, M.

10.1101/354944 — bioinformatics — Posted on 2018-06-26

458 A minimal \"push-pull\" bistability model explains oscillations between quiescent and proliferative cell states.

Krishna, S.; Laxman, S.

10.1101/239897 — systems biology — Posted on 2018-06-26

459 Fast and accurate inference of phylogenetic networks using large-scale genomic sequence data

Hejase, H.; VandePol, N.; Bonito, G. M.; Liu, K. J.

10.1101/132795 — bioinformatics — Posted on 2018-06-26

460 Field evidence for manipulation of mosquito host selection by the human malaria parasite, Plasmodium falciparum

Vantaux, A.; Yao, F.; Hien, D. F.; Guissou, E.; Yameogo, B. K.; Gouagna, L.-C.; Fontenille, D.; Renaud, F.; Simard, F.; Constantini, C.; Thomas, F.; Mouline, K.; Roche, B.; Cohuet, A.; Dabire, K. R.; Lefevre, T.

10.1101/207183 — evolutionary biology — Posted on 2018-06-26

461 Longitudinal network theory approaches identify crucial factors affecting sporulation efficiency in yeast

Sarkar, C.; Gupta, S.; Verma, R. K.; Sinha, H.; Jalan, S.

10.1101/068270 — systems biology — Posted on 2018-06-26

462 Kinetic basis for DNA target specificity of CRISPR-Cas12a

Strohkendl, I.; Saifuddin, F. A.; Rybarski, J. R.; Finkelstein, I. J.; Russell, R.

10.1101/355917 — molecular biology — Posted on 2018-06-26

463 Canonical Wnt signaling regulates patterning, differentiation and nucleogenesis in mouse hypothalamus and prethalamus.

Newman, E.; Wu, D.; Taketo, M. M.; Zhang, J.; Blackshaw, S.

10.1101/355750 — developmental biology — Posted on 2018-06-26

464 Follicle stimulating hormone is an autocrine regulator of the ovarian cancer metastatic niche through Notch signaling

Dighe, R.; Gera, S.; Kumar S, S.; N. Swamy, S.; Bhagat, R.; Vadaparty, A.; Gawari, R.; Bhat, R.

10.1101/355537 — cancer biology — Posted on 2018-06-26

465 Expanded genetic landscape of chronic obstructive pulmonary disease reveals heterogeneous cell type and phenotype associations

Sakornsakolpat, P.; Prokopenko, D.; Lamontagne, M.; Reeve, N. F.; Guyatt, A. L.; Jackson, V. E.; Shrine, N.; Qiao, D.; Bartz, T. M.; Kim, D. K.; Lee, M. K.; Latourelle, J. C.; Li, X.; Morrow, J. D.; Obeidat, M.; Wyss, A. B.; Zhou, X.; Bakke, P.; Barr, R. G.; Beaty, T. H.; Belinsky, S. A.; Brusselle, G. G.; Crapo, J. D.; Jong, K. d.; DeMeo, D. L.; Fingerlin, T. E.; Gharib, S. A.; Gulsvik, A.; Hall, I. P.; Hokanson, J. E.; Kim, W. J.; Lomas, D. A.; London, S. J.; Meyers, D. A.; O'Connor, G. T.; Rennard, S. I.; Schwartz, D. A.; Sliwinski, P.; Sparrow, D.; Strachan, D. P.; Tal-Singer, R.; Tesfaig

10.1101/355644 — genetics — Posted on 2018-06-26

466 A somatic evolutionary model of the dynamics of aneuploid cells during hematopoietic reconstitution

Rozhok, A.; Silberman, R. E.; Amon, A.; DeGregori, J.

10.1101/355826 — cell biology — Posted on 2018-06-26

467 Delving deeper: Relating the behaviour of a metabolic system to the properties of its components using symbolic metabolic control analysis

Christensen, C. D.; Hofmeyr, J.-H. S.; Rohwer, J. M.

10.1101/356139 — systems biology — Posted on 2018-06-26

468 mTORC1 activity is dispensable for synthesis of KSHV lytic proteins

Pringle, E. S.; Robinson, C.-A.; Crapoulet, N.; Monjo, A. L.-A.; Leidal, A. M.; Lewis, S. M.; Gaston, D.; Uniacke, J.; McCormick, C.

10.1101/356162 — microbiology — Posted on 2018-06-26

469 CellSpecks: A Software for Automated Detection and Analysis of Calcium Channels in Live Cells

Shah, S. I.; Smith, M.; Swaminathan, D.; Parker, I.; Ullah, G.; Demuro, A.

10.1101/355693 — bioinformatics — Posted on 2018-06-25

470 Seeking the common beauty in the brain: A meta-analysis of fMRI studies of beautiful human faces and visual art

Hu, C.-P.; Huang, Y.; Eickhoff, S. B.; Peng, K.; Sui, J.

10.1101/081539 — neuroscience — Posted on 2018-06-25

471 An Optically Decodable Bead Array for Linking Imaging and Sequencing with Single-Cell Resolution

Yuan, J.; Sheng, J.; Sims, P. A.

10.1101/355677 — systems biology — Posted on 2018-06-25

472 When parasites are selected to kill the young

Iritani, R.; Visher, E.; Boots, M.

10.1101/324632 — ecology — Posted on 2018-06-25

473 Assessment of Metagenomic MinION and Illumina sequencing as an approach for the recovery of whole genome sequences of chikungunya and dengue viruses directly from clinical samples.

Kafetzopoulou, L. E.; Efthymiadis, K.; Lewandowski, K.; Crook, A.; Carter, D.; Osborne, J.; Aarons, E.; Hewson, R.; Hiscox, J. A.; Carroll, M. W.; Vipond, R.; Pullan, S. T.

10.1101/355560 — microbiology — Posted on 2018-06-25

474 Lysophosphatidic acid provokes fibroblast chemotaxis through combinatorial regulation of myosin II

Asokan, S.; Johnson, H.; Sondek, J.; Shutova, M.; Svitkina, T.; Haugh, J.; Bear, J.

10.1101/355610 — cell biology — Posted on 2018-06-25

475 A 14-day Dexamethasone timecourse exposure in Caco-2 monolayers results in differential expression of tight-junction and cytoskeleton regulatory pathway genes

Robinson, J.; Abey, S.; Kenea, N.; Henderson, W.

10.1101/355552 — cell biology — Posted on 2018-06-25

476 Lag Effects in Primate Brain Size Evolution: A Re-Evaluation

Dunbar, R. I. M.

10.1101/355453 — animal behavior and cognition — Posted on 2018-06-25

477 ALIEN SPECIES OF FISH IN THE LITTORAL OF VOLGA AND KAMA RESERVOIRS (RESULTS OF COMPLEX EXPEDITIONS OF IBIW RAS IN 2005-2017)

Karabanov, D. P.; Pavlov, D. D.; Bazarov, M. I.; Borovikova, E. A.; Gerasimov, Y. V.; Kodukhova, Y. V.; Smirnov, A. A.; Stolbunov, I. A.

10.1101/355362 — zoology — Posted on 2018-06-25

478 Non-assortative community structure in resting and task-evoked functional brain networks

Betzel, R. F.; Bertolero, M. A.; Bassett, D. S.

10.1101/355016 — neuroscience — Posted on 2018-06-25

479 Placental epigenetics for evaluation of fetal congenital heart defects: Ventricular septal defect (VSD)

Bahado-Singh, R. O.; Albayrak, S.; Zafra, R.; Baraa, A.; Veerappa, A. M.; Mahishi, D.; Saiyed, N.; Mishra, N. K.; Guda, C.; Ali-Fehmi, R.; Radhakrishna, U.

10.1101/355768 — genomics — Posted on 2018-06-25

480 Viral Fitness Across a Continuum from Lysis to Latency

Weitz, J. S.; Li, G.; Gulbudak, H.; Cortez, M. H.; Whitaker, R. J.

10.1101/296897 — ecology — Posted on 2018-06-25

481 PRL-1 is required for neuroprotection against olfactory CO2 stimulation in Drosophila

Xi, Y.; Yang, X.; Guo, P.; Xu, X.; Wang, F.; Yuan, X.; Tu, Y.; Zhang, B.; Zheng, H.; Yu, D.; Ge, W.; Gong, Z.; Gao, W.

10.1101/355438 — neuroscience — Posted on 2018-06-25

482 Dopamine maintains network synchrony via direct modulation of gap junctions in the crustacean cardiac ganglion

Lane, B. J.; Kick, D. R.; Wilson, D. K.; Nair, S. S.; Schulz, D. J.

10.1101/355651 — neuroscience — Posted on 2018-06-25

483 Capturing remote activation of epilepsy source?

Paraskevov, A.; Zendrikov, D.

10.1101/355255 — neuroscience — Posted on 2018-06-25

484 MBIR: A Cryo-electron Tomography 3D Reconstruction Method that Effectively Minimizes Missing Wedge Artifacts and Restores Missing Information

Yan, R.; Venkatakrishnan, S. V.; Liu, J.; Bouman, C. A.; Jiang, W.

10.1101/355529 — biophysics — Posted on 2018-06-25

485 High-resolution genetic map and QTL analysis of growth-related traits of Hevea brasiliensis cultivated under suboptimal temperature and humidity conditions

Conson, A. R. O.; Taniguti, C. H.; Amadeu, R. R.; Andreotti, I. A. A.; de Souza, L. M.; dos Santos, L. H. B.; Rosa, J. R. B. F.; Mantello, C. C.; da Silva, C. C.; Scaloppi Junior, E. J.; Ribeiro, R. V.; Le Guen, V.; Garcia, A. A. F.; Goncalves, P. d. S.; de Souza, A. P.

10.1101/355008 — plant biology — Posted on 2018-06-25

486 Neural representation of social expectations during interpersonal decisions

Díaz-Gutiérrez, P.; Arco, J. E.; Alguacil, S.; González-García, C.; Ruz, M.

10.1101/355115 — neuroscience — Posted on 2018-06-25

487 Multimodal evidence for delayed fear extinction in adolescence and young adulthood.

Morriss, J.; Christakou, A.; van Reekum, C. M.

10.1101/355503 — neuroscience — Posted on 2018-06-25

488 The exon junction complex undergoes a compositional switch that alters mRNP structure and nonsense-mediated mRNA decay activity

Mabin, J. W.; Woodward, L. A.; Patton, R.; Yi, Z.; Jia, M.; Wysocki, V.; Bundschuh, R.; Singh, G.

10.1101/355495 — molecular biology — Posted on 2018-06-25

489 CDK phosphorylation of Xenopus laevis M18BP1 promotes its metaphase centromere localization

French, B. T.; Straight, A. F.

10.1101/355487 — cell biology — Posted on 2018-06-25

490 HPAanalyze: An R Package that Facilitate the Retrieval and Analysis of The Human Protein Atlas Data

Tran, A. N.; Hjelmeland, A.

10.1101/355032 — bioinformatics — Posted on 2018-06-25

491 Cell type-dependent effects of ellagic acid on cellular metabolism

Boehning, A. L.; Essien, S. A.; Underwood, E. L.; Dash, P. K.; Boehning, D.

10.1101/319533 — cell biology — Posted on 2018-06-25

492 Stratified time-course gene preselection shows a pre-diagnostic transcriptomic signal for metastasis in blood cells: a proof of concept from the NOWAC study

Holsbo, E.; Perduca, V.; Bongo, L. A.; Lund, E.; Birmele, E.

10.1101/141325 — bioinformatics — Posted on 2018-06-25

493 Mass-spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation

Budnik, B.; Levy, E.; Harmange, G.; Slavov, N.

10.1101/102681 — bioengineering — Posted on 2018-06-25

494 Low Perfusion Compartments in Glioblastoma Quantified by Advanced Magnetic Resonance Imaging and Correlated with Patient Survival

Li, C.; Yan, J.-L.; Torheim, T.; McLean, M. A.; Boonzaier, N. R.; Huang, Y.; Yuan, J.; Van Dijken, B. R. J.; Matys, T.; Markowetz, F.; Price, S. J.

10.1101/180521 — neuroscience — Posted on 2018-06-25

495 Periodic variation of mutation rates in bacterial genomes associated with replication timing

Dillon, M. M.; Sung, W.; Lynch, M.; Cooper, V. S.

10.1101/195818 — genetics — Posted on 2018-06-25

496 Dynamic Control of Hippocampal Spatial Coding Resolution by Local Visual Cues

Bourboulou, R.; Marti, G.; Michon, F.-X.; Nouguier, M.; Robbe, D.; Koenig, J.; Epsztein, J.

10.1101/275420 — neuroscience — Posted on 2018-06-25

497 Estimating sleep parameters using an accelerometer without sleep diary

van Hees, V. T.; Sabia, S.; Jones, S. E.; Wood, A. R.; Anderson, K. N.; Kivimaki, M.; Frayling, T. M.; Pack, A. I.; Bucan, M.; Mazzotti, D. R.; Gehrman, P. R.; Singh-Manoux, A.; Weedon, M. N.

10.1101/257972 — epidemiology — Posted on 2018-06-25

498 Mediator is essential for small nuclear and nucleolar RNA transcription in yeast

Tourigny, J. P.; Saleh, M. M.; Zentner, G. E.

10.1101/352906 — molecular biology — Posted on 2018-06-25

499 WAVES: a Web Application for Versatile Enhanced bioinformatic Services

Chakiachvili, M.; Milanesi, S.; Arigon Chifolleau, A.-M.; Lefort, V.

10.1101/276485 — bioinformatics — Posted on 2018-06-25

500 Rapid alignment-free phylogenetic identification of metagenomic sequences

Linard, B.; Swenson, K.; Pardi, F.

10.1101/328740 — bioinformatics — Posted on 2018-06-25

501 A skin pigment compound that also functions as sunglasses for birds

Zawadzka, M.; Racz, B.; Ambrosini, D.; Gorbitz, C. H.; Morth, J. P.; Lundanes, E.; Rise, F.; Ringvold, A.; Wilson, S. R.

10.1101/336644 — biochemistry — Posted on 2018-06-25

502 Fast Hebbian Plasticity explains Working Memory and Neural Binding

Fiebig, F.; Herman, P.; Lansner, A.

10.1101/334821 — neuroscience — Posted on 2018-06-25

503 Aedes anphevirus (AeAV): an insect-specific virus distributed worldwide in Aedes aegypti mosquitoes that has complex interplays with Wolbachia and dengue virus infection in cells

Parry, R.; Asgari, S.

10.1101/335067 — microbiology — Posted on 2018-06-25

504 A high-quality grapevine downy mildew genome assembly reveals rapidly evolving and lineage-specific putative host adaptation genes

Dussert, Y.; Mazet, I. D.; Couture, C.; Gouzy, J.; Piron, M.-C.; Kuchly, C.; Bouchez, O.; Rispe, C.; Mestre, P.; Delmotte, F.

10.1101/350041 — genomics — Posted on 2018-06-25

505 Analysing progress of SDG 6 in India: Past, Present, and Future

Roy, A.; Pramanick, K.

10.1101/344184 — ecology — Posted on 2018-06-25

506 Systematic Characterization of RhoGEF/RhoGAP Regulatory Proteins Reveals Organization Principles of Rho GTPase Signaling

Mueller, P. M.; Rademacher, J.; Bagshaw, R. D.; Alp, K. M.; Giudice, G.; Heinrich, L. E.; Barth, C.; Eccles, R. L.; Sanchez-Castro, M.; Brandenburg, L.; Mbamalu, G.; Tucholska, M.; Spatt, L.; Wortmann, C.; Czajkowski, M. T.; Welke, R. W.; Zhang, S.; Nguyen, V.; Rrustemi, T.; Trnka, P.; Freitag, K.; Larsen, B.; Popp, O.; Mertins, P.; Bakal, C.; Gingras, A.-C.; Pertz, O.; Roth, F. P.; Colwill, K.; Pawson, T.; Petsalaki, E.; Rocks, O.

10.1101/354316 — cell biology — Posted on 2018-06-25

507 IFN-γ induces epithelial-to-mesenchymal transition of cancer cells via an unique microRNA processing

Hsieh, J.-T.; Lo, U.-G.; Pong, R.-C.; Yang, D.; Gandee, L.; Hernandez, E.; Dang, A.; Lin, C.-J.; Santoyo, J.; Ma, S.-H. M.; Sonavane, R.; Huang, J.; Tseng, S.-F.; Moro, L.; Arbini, A. A.; Kapur, P.; Raj, G. V.; He, D.; Lai, C.-H.; Lin, H.

10.1101/355263 — cancer biology — Posted on 2018-06-25

508 PTK2 regulates the UPS impairment via p62 phosphorylation in TDP-43 proteinopathy

Lee, S.; Jeon, Y.-M.; Kim, S.; Kwon, Y.; Jo, M.; Jang, Y.-N.; Lee, S.; Kim, J.; Kim, S. R.; Lee, K. J.; Lee, S. B.; Kim, K.; Kim, H.-J.

10.1101/355446 — neuroscience — Posted on 2018-06-25

509 PRReMS: Parallel Regularised Regression Model Search for bio-signature discovery

Hoggart, C. J.

10.1101/355479 — bioinformatics — Posted on 2018-06-25

510 HmtVar: a brand-new resource for human mitochondrial variations and pathogenicity data

Preste, R.; Vitale, O.; Clima, R.; Attimonelli, M.

10.1101/355461 — bioinformatics — Posted on 2018-06-25

511 Healthspan pathway maps in C. elegans and humans highlight transcription, prolifera-tion/biosynthesis and lipids

Steffen, M.; Saul, N.; Cohen, A. A.; Koehling, R.; Sender, S.; Murua Escobar, H.; Junghanss, C.; Cirulli, F.; Berry, A.; Antal, P.; Adler, P.; Vilo, J.; Boiani, M.; Jansen, L.; Struckmann, S.; Barrantes, I.; Hamed, M.; Luyten, W.; Fuellen, G.

10.1101/355131 — bioinformatics — Posted on 2018-06-25

512 Why did some practices not implement new antibiotic prescribing guidelines on urinary tract infection? A cohort study and survey in NHS England primary care

Croker, R.; Walker, A. J.; Goldacre, B.

10.1101/355289 — microbiology — Posted on 2018-06-25

513 Effects of pathogenic CNVs on physical traits in participants of the UK Biobank

Owen, D.; Bracher-Smith, M.; Kendall, K.; Rees, E.; Einon, M.; Escott-Price, V.; Owen, M. J.; O'Donovan, M.; Kirov, G.

10.1101/355297 — genetics — Posted on 2018-06-25

514 Regulatory T-cells are required for neonatal heart regeneration

Li, J.; Yang, K. Y.; Tam, R. C. Y.; Chan, V. W.; Sheng, B.; Hori, S.; Zhou, B.; Lo, Y. M. D.; Lui, K. O.

10.1101/355065 — developmental biology — Posted on 2018-06-25

515 Reproducible Data Analysis Pipelines for Precision Medicine

Fjukstad, B.; Dumeaux, V.; Hallett, M.; Bongo, L.

10.1101/354811 — bioinformatics — Posted on 2018-06-25

516 Signals of polygenic adaptation on height have been overestimated due to uncorrected population structure in genome-wide association studies

Sohail, M.; Maier, R. M.; Ganna, A.; Bloemendal, A.; Martin, A. R.; Turchin, M. C.; Chiang, C. W. K.; Hirschhorn, J. N.; Daly, M.; Patterson, N.; Neale, B.; Mathieson, I.; Reich, D.; Sunyaev, S. R.

10.1101/355057 — evolutionary biology — Posted on 2018-06-25

517 ZO-2 induces cytoplasmic retention of YAP by promoting a LATS1-ZO-2-YAP complex at tight junctions

Xuan, O. L.; Lin, L. B.; Chew, T. W.; Motegi, F.; Low, B. C.

10.1101/355081 — cell biology — Posted on 2018-06-25

518 Epigenetic-scale comparison of human iPSCs generated by retrovirus, Sendai virus or episomal vectors

Nishino, K.; Arai, Y.; Takasawa, K.; Toyoda, M.; Yamazaki-Inoue, M.; Sugawara, T.; Akutsu, H.; Nishimura, K.; Ohtaka, M.; Nakanishi, M.; Umezawa, A.

10.1101/355099 — cell biology — Posted on 2018-06-25

519 An integrated workflow for cross-linking/mass spectrometry

Mendes, M. L.; Fischer, L.; Chen, Z. A.; Barbon, M.; O'Reilly, F. J.; Bohlke-Schneider, M.; Belsom, A.; Dau, T.; Combe, C. W.; Graham, M.; Eisele, M. R.; Baumeister, W.; Speck, C.; Rappsilber, J.

10.1101/355396 — biochemistry — Posted on 2018-06-25

520 Reduced signal for polygenic adaptation of height in UK Biobank

Berg, J. J.; Harpak, A.; Sinnott-Armstrong, N.; Joergensen, A. M.; Mostafavi, H.; Field, Y.; Boyle, E. A.; Zhang, X.; Racimo, F.; Pritchard, J. K.; Coop, G.

10.1101/354951 — evolutionary biology — Posted on 2018-06-25

521 Lactate production without hypoxia in skeletal muscle during electrical cycling: Crossover study of femoral venous-arterial differences in healthy volunteers

Gojda, J.; Waldauf, P.; Hruskova, N.; Blahutova, B.; Krajcova, A.; Tuma, P.; Rasova, K.; Duska, F.

10.1101/355321 — physiology — Posted on 2018-06-25

522 DNA-Encircled Lipid Bilayers

Iric, K.; Subramanian, M.; Oertel, J.; Agarwal, N. P.; Matthies, M.; Periole, X.; Sakmar, T. P.; Huber, T.; Fahmy, K.; Schmidt, T.-L.

10.1101/285957 — biophysics — Posted on 2018-06-25

523 Opening the Pandora Box: DNA-barcoding evidence limitations of morphology to identify Spanish mosquitoes

Delgado-Serra, S.; Viader, M.; Ruiz Arrondo, I.; Miranda, M. A.; Barcelo, C.; Bueno-Mari, R.; Hernandez-Triana, L.; Miquel, M.; Paredes-Esquivel, C.

10.1101/354803 — zoology — Posted on 2018-06-25

524 Phosphatidylinositol 5 phosphate 4-kinase regulates insulin sensitivity and PIP3 turnover in Drosophila.

Sharma, S.; Mathre, S.; Visvanathan, R.; Shinde, D.; Raghu, P.

10.1101/333153 — cell biology — Posted on 2018-06-25

525 CosMIC: A Consistent Metric for Spike Inference from Calcium Imaging

Reynolds, S.; Abrahamsson, T.; Sjöström, P. J.; Schultz, S. R.; Dragotti, P. L.

10.1101/238592 — neuroscience — Posted on 2018-06-25

526 Software update: Moving the R package sommer to multivariate mixed models for genome-assisted prediction

Covarrubias-Pazaran, G.

10.1101/354639 — genetics — Posted on 2018-06-25

527 Measuring tolerance to a major fungal pathogen in elite wheat cultivars

Mikaberidze, A.; McDonald, B. A.

10.1101/354357 — ecology — Posted on 2018-06-25

528 Morphological, cellular and molecular characterization of posterior regeneration in the marine annelid Platynereis dumerilii

Planques, A.; Malem, J.; Parapar, J.; Vervoort, M.; Gazave, E.

10.1101/352211 — developmental biology — Posted on 2018-06-25

529 Gene editing can generate fragile bivalents in mouse oocytes

Manil-Segalen, M.; Łuksza, M.; Kannaan, J.; Marthiens, V.; Lane, S. I. R.; Jones, K. T.; Terret, M.-E.; Basto, R.; Verlhac, M.-H.

10.1101/350272 — cell biology — Posted on 2018-06-25

530 Association of tamoxifen resistance and lipid reprogramming in breast cancer.

Hultsch, S.; Kankainen, M.; Paavolainen, L.; Kovanen, R.-M.; Ikonen, E.; Kangaspeska, S.; Pietiaeinen, V.; Kallioniemi, O.

10.1101/276618 — cancer biology — Posted on 2018-06-25

531 Stick-slip dynamics of cell adhesion triggers spontaneous symmetry breaking and directional migration

Hennig, K.; Wang, I.; Moreau, P.; Valon, L.; De Beco, S.; Coppey, M.; Miroshnikova, Y.; Albiges Rizo, C.; Favard, C.; Voituriez, R.; Balland, m.

10.1101/354696 — biophysics — Posted on 2018-06-25

532 How well can we create phased, diploid, human genomes?: An assessment of FALCON-Unzip phasing using a human trio

Fungtammasan, A.; Hannigan, B.

10.1101/262196 — bioinformatics — Posted on 2018-06-25

533 Recent mixing of Vibrio parahaemolyticus populations

Yang, C.; Pei, X.; Wu, Y.; Yan, L.; Yan, Y.; Song, Y.; Coyle, N.; Martinez-Urtaza, J.; Quince, C.; Hu, Q.; Jiang, M.; Feil, E.; Yang, D.; Song, Y.; Zhou, D.; Yang, R.; Falush, D.; Cui, Y.

10.1101/354761 — microbiology — Posted on 2018-06-25

534 Somatic maintenance impacts the evolution of mutation rate

Rozhok, A.; DeGregori, J.

10.1101/181065 — evolutionary biology — Posted on 2018-06-25

535 Genomic analysis of fast expanding bacteria reveals new molecular adaptive mechanisms

Bosshard, L.; Peischl, S.; Ackermann, M.; Excoffier, L.

10.1101/355404 — evolutionary biology — Posted on 2018-06-25

536 De novo transcriptomic characterization of Betta splendens for identifying sex-biased genes potentially involved in aggressive behavior modulation and EST-SSR maker development

Yang, W.; Wang, Y.; Zhu, C.; Li, G.; Huang, H.; Chen, H.

10.1101/355354 — zoology — Posted on 2018-06-25

537 Mutators as drivers of adaptation in pathogenic bacteria and a risk factor for host jumps and vaccine escape: insights into evolutionary epidemiology of the global aquatic pathogen Streptococcus iniae

Silayeva, O.; Engelstaedter, J.; Barnes, A. C.

10.1101/355412 — microbiology — Posted on 2018-06-25

538 RBM-5 modulates U2AF large subunit-dependent alternative splicing in C. elegans

Zhou, C.; Gao, X.; Hu, S.; Gan, W.; Xu, J.; Ma, Y. C.; MA, L.

10.1101/355388 — genetics — Posted on 2018-06-25

539 Probing protein allostery as a residue-specific concept via residue perturbation maps

Hayatshahi, H. S.; Ahuactzin, E.; Tao, P.; Wang, S.; Liu, J.

10.1101/355370 — biophysics — Posted on 2018-06-25

540 Increased production of the extracellular polysaccharide Psl can give a growth advantage to Pseudomonas aeruginosa in low-iron conditions

Hutchison, J.; Kaushik, K.; Rodesney, C.; Lilieholm, T.; Bakhtiari, L.; Gordon, V. D.

10.1101/355339 — microbiology — Posted on 2018-06-25

541 Differential Profiles of Soluble and Cellular Toll-like Receptors (TLRs) 2 and 4 in Chronic Periodontitis.

AlQallaf, H.; Hamada, Y.; Blanchard, S.; Shin, D.; Gregory, R.; Srinivasan, M.

10.1101/355347 — immunology — Posted on 2018-06-25

542 Cell-intrinsic genetic regulation of peripheral memory-phenotype T cell frequencies

Chawla, A. S.; Kanodia, P.; Mukherjee, A.; Jain, V.; Kaur, G.; Coshic, P.; Chatterjee, K.; Wadhwa, N.; Natchu, U. C. M.; Sopory, S.; Bhatnagar, S.; Majumder, P. P.; George, A.; Bal, V.; Rath, S.; Prabhu, S. B.

10.1101/355313 — immunology — Posted on 2018-06-25

543 Implication of exofacial thiol groups in the reducing activity of Listeria monocytogenes

Pillot, G.; Brillet-Viel, A.; Prevost, H.

10.1101/353409 — microbiology — Posted on 2018-06-25

544 A repressor-decay timer for robust temporal patterning in embryonic Drosophila neuroblast lineages

Averbukh, I.; Lai, S.-L.; Doe, C. Q.; Barkai, N.

10.1101/354969 — bioinformatics — Posted on 2018-06-25

545 Mechanics of exploration in Drosophila melanogaster

Loveless, J.; Lagogiannis, K.; Webb, B.

10.1101/354795 — animal behavior and cognition — Posted on 2018-06-24

546 Enhanced β-secretase processing of amyloid precursor protein in the skeletal muscle of ALS animal models

Yang, H.

10.1101/352401 — pathology — Posted on 2018-06-24

547 Mutational likeliness and entropy help to identify driver mutations and their functional role in cancer

Mattiuz, G.; Di Giorgio, S.; Tofani, L.; Frandi, A.; Donati, F.; Brilli, M.; Conticello, S. G.

10.1101/354324 — cancer biology — Posted on 2018-06-24

548 Critical role of post-transcriptional regulation for IFN-γ in tumor-infiltrating T cells

Salerno, F.; Guislain, A.; Freen-van Heeren, J. J.; Nicolet, B. P.; Young, H. A.; Wolkers, M. C.

10.1101/339580 — immunology — Posted on 2018-06-24

549 ATR repression at telomeres by POT1a and POT1b: RPA exclusion and interference by CST

Kratz, K.; de Lange, T.

10.1101/354985 — cell biology — Posted on 2018-06-24

550 TP53 mutations promote immunogenic activity in breast cancer

Liu, Z.; Jiang, Z.; Gao, Y.; Wang, L.; Chen, C.; Wang, X.

10.1101/354779 — cancer biology — Posted on 2018-06-24

551 Genetic characterization of invasive house mouse populations on small islands

Morgan, A. P.; Didion, J. P.; Hughes, J. J.; Searle, J. B.; Jolley, W. J.; Campbell, K. J.; Threadgill, D. W.; Pardo Manuel de Villena, F.

10.1101/332064 — genetics — Posted on 2018-06-24

552 Environmental sources of bacteria and genetic variation in behavior influence host-associated microbiota

Mushegian, A. A.; Arbore, R.; Walser, J.-C.; Ebert, D.

10.1101/296228 — evolutionary biology — Posted on 2018-06-24

553 Classification of early and late stage Liver Hepatocellular Carcinoma patients from their genomics and epigenomics profiles.

Kaur, H.; Bhalla, S.; Raghava, G. P. S.

10.1101/292854 — bioinformatics — Posted on 2018-06-24

554 The Brain Dynamics Toolbox for Matlab

Heitmann, S.; Aburn, M. J.; Breakspear, M.

10.1101/219329 — neuroscience — Posted on 2018-06-24

555 Subjective confidence reveals the hierarchical nature of learning under uncertainty

Heilbron, M.; Meyniel, F.

10.1101/256016 — neuroscience — Posted on 2018-06-24

556 An exact transformation of convolutional kernels enables accurate identification of sequence motifs

Ding, Y.; Li, J.-Y.; Wang, M.; Gao, G.

10.1101/163220 — bioinformatics — Posted on 2018-06-24

557 IRIS-EDA: An integrated RNA-Seq interpretation system for gene expression data analysis

Monier, B.; McDermaid, A.; Zhao, J.; Fennell, A.; Ma, Q.

10.1101/283341 — bioinformatics — Posted on 2018-06-24

558 Modeling of DNA replication in rapidly growing bacteria with one and two replication origins

Retkute, R.; Hawkins, M.; Rudolph, C. J.; Nieduszynsk, C. A.

10.1101/354654 — systems biology — Posted on 2018-06-24

559 Modification and de novo design of non-ribosomal peptide synthetases (NRPS) using specific assembly points within condensation domains

Bozhueyuek, K. A. J.; Linck, A.; Tietze, A.; Wesche, F.; Nowak, S.; Fleischhacker, F.; Bode, H. B.

10.1101/354670 — synthetic biology — Posted on 2018-06-24

560 The Ly6/uPAR protein Bouncer is necessary and sufficient for species-specific fertilization

Herberg, S.; Gert, K. R.; Schleiffer, A.; Pauli, A.

10.1101/354688 — developmental biology — Posted on 2018-06-24

561 Systematic Characterization of RhoGEF/RhoGAP Regulatory Proteins Reveals Organization Principles of Rho GTPase Signaling

Rocks, O.; Mueller, P. M.; Rademacher, J.; Bagshaw, R. D.; Alp, K. M.; Giudice, G.; Heinrich, L. E.; Barth, C.; Eccles, R. L.; Sanchez-Castro, M.; Mbamalu, G.; Tucholska, M.; Spatt, L.; Wortmann, C.; Czajkowski, M. T.; Welke, R. W.; Zhang, S.; Nguyen, V.; Brandeburg, L.; Rrustemi, T.; Trnka, P.; Freitag, K.; Larsen, B.; Popp, O.; Colwill, K.; Mertins, P.; Gingras, A.-C.; Bakal, C.; Pertz, O.; Roth, F. P.; Pawson, T.; Petsalaki, E.

10.1101/354316 — cell biology — Posted on 2018-06-24

562 Drosophila small ovary encodes a zinc-finger repressor required for ovarian differentiation

Benner, L.; Castro, E. A.; Whitworth, C.; Venken, K. J.; Yang, H.; Oliver, B.; Lerit, D.; Cook, K. R.

10.1101/354746 — developmental biology — Posted on 2018-06-24

563 Analysis and Correction of Inappropriate Image Duplication: The Molecular and Cellular Biology Experience

Casadevall, A.; Bik, E. M.; Fang, F. C.; Kullas, A.; Davis, R. J.

10.1101/354621 — scientific communication and education — Posted on 2018-06-24

564 Deep SNP: An End-to-end Deep Neural Network with Attention-based Localization for Break-point Detection in SNP Array Genomic data

Eghbalzadeh, H.; Fischer, L.; Popitsch, N.; Kromp, F.; Taschner-Mandl, S.; Koutini, K.; Gerber, T.; Bozsaky, E.; Ambros, P. F.; Ambros, I. M.; Widmer, G.; Moser, B. A.

10.1101/354423 — genomics — Posted on 2018-06-24

565 Simulation of P2X-mediated calcium signaling in microglia

Chun, B.; Stewart, B. D.; Vaughan, D. D.; Bachstetter, A. S.; Kekenes-Huskey, P.

10.1101/354142 — systems biology — Posted on 2018-06-24

566 Citizen science data enhance spatio-temporal extent and resolution of animal population studies

Sun, C.; Fuller, A. K.; Hurst, J. E.

10.1101/352708 — ecology — Posted on 2018-06-24

567 Poly(ADP-ribosyl)ation associated changes in CTCF-chromatin binding and gene expression in breast cells

Pavlaki, I.; Docquier, F.; Chernukhin, I.; Kita, G.; Gretton, S.; Clarkson, C. T.; Teif, V. B.; Klenova, E.

10.1101/175448 — molecular biology — Posted on 2018-06-23

568 The washing machine as a reservoir for transmission of ESBL-producing Klebsiella oxytoca in newborns

Schmithausen, R. M.; Exner, M.; Rösing, C.; Savin, M.; Hack, S.; Bloomfield, S.; Kaase, M.; Gebel, J.; Engelhart, S.; Exner, D.

10.1101/354613 — microbiology — Posted on 2018-06-23

569 Poly(ADP-ribosyl)ation associated changes in CTCF-chromatin binding and gene expression in breast cells

Pavlaki, I.; Docquier, F.; Chernukhin, I.; Kita, G.; Gretton, S.; Clarkson, C. T.; Teif, V. B.; Klenova, E.

10.1101/175448 — molecular biology — Posted on 2018-06-23

570 De novo genome and transcriptome analyses provide insights into the biology of the trematode human parasite Fasciolopsis buski

Biswal, D. K.; Roychowdhury, T.; Pandey, P.; Tandon, V.

10.1101/354456 — evolutionary biology — Posted on 2018-06-23

571 Development of reduced gluten wheat enabled by determination of the genetic basis of the lys3a low hordein barley mutant

Moehs, C. P.; Austill, W. J.; Holm, A.; Large, T. A. G.; Loeffler, D.; Mullenberg, J.; Schnable, P. S.; Skinner, W.; van Boxtel, J.; Wu, L.; McGuire, C.

10.1101/354548 — plant biology — Posted on 2018-06-23

572 Verification of the phenylpropanoid pinoresinol biosynthetic pathway and its glycosides in Phomopsis sp. XP-8 using 13C stable isotope labeling and liquid chromatography coupled with time-of-flight mass spectrometry

Zhang, Y.; Shi, J.; Ni, Y.; Liu, Y.; Zhao, Z.; Zhao, Q.; Gao, Z.-H.

10.1101/354605 — microbiology — Posted on 2018-06-23

573 Constrained mutational sampling of amino acids in HIV-1 protease evolution

Boucher, J. I.; Whitfield, T. W.; Dauphin, A.; Nauchum, G.; Zeldovich, K. B.; Swanstrom, R.; Schiffer, C. A.; Luban, J.; Bolon, D. N. A.

10.1101/354597 — evolutionary biology — Posted on 2018-06-23

574 Assessment of the effects of transthyretin peptide inhibitors in Drosophila models of neuropathic ATTR

Saelices, L.; Pokrzywa, M.; Pawelek, K.; Eisenberg, D.

10.1101/354555 — neuroscience — Posted on 2018-06-23

575 Determining the Hierarchical Architecture of the Human Brain Using Subject-Level Clustering of Functional Networks

Akiki, T. J.; Abdallah, C. G.

10.1101/350462 — neuroscience — Posted on 2018-06-23

576 Ref-1/APE1 inhibition with novel small molecules blocks ocular neovascularization

Sheik Pran Babu, S. P.; Sishtla, K.; Sulaiman, R. S.; Park, B.; Shetty, T.; Shah, F.; Fishel, M. L.; Wikel, J. H.; Kelley, M. R.; Corson, T. W.

10.1101/296590 — pharmacology and toxicology — Posted on 2018-06-23

577 Functional decoupling of emotion coping network subserves automatic emotion regulation by implementation intention

Chen, S.; Ding, N.; Biswal, B.; Li, Z.; Qin, S.; Xie, C.; Chen, C.; Yuan, J.

10.1101/336800 — neuroscience — Posted on 2018-06-23

578 Co-outbreak of ST37 and a novel ST3006 Klebsiella pneumoniae from multi-site infection in a neonatal intensive care unit: a retrospective study

Chen, D.; Hu, X.; Chen, F.; Li, H.; Wang, D.; Li, X.; Wu, C.; Li, N.; Wu, S.; Li, Z.; Chen, L.; Chen, Y.

10.1101/334169 — microbiology — Posted on 2018-06-23

579 Edge Factors: Scientific Frontier Positions of Nations

Packalen, M.

10.1101/246264 — scientific communication and education — Posted on 2018-06-23

580 Single-Cell Transcriptome Analysis of Lineage Diversity and Microenvironment in High-Grade Glioma

Yuan, J.; Levitin, H. M.; Frattini, V.; Bush, E. C.; Boyett, D. M.; Samanamud, J.; Ceccarelli, M.; Dovas, A.; Zanazzi, G.; Canoll, P.; Bruce, J. N.; Lasorella, A.; Iavarone, A.; Sims, P. A.

10.1101/250704 — cancer biology — Posted on 2018-06-23

581 Non-parametric and semi-parametric support estimation using SEquential RESampling random walks on biomolecular sequences

Wang, W.; Smith, J.; Hejase, H.; Liu, K. J.

10.1101/292078 — bioinformatics — Posted on 2018-06-23

582 Maximum entropy framework for inference of cell population heterogeneity in signaling network dynamics

Dixit, P.; Lyashenko, E.; Niepel, M.; Vitkup, D.

10.1101/137513 — systems biology — Posted on 2018-06-23

583 Neural systems of cognitive demand avoidance

Sayali, C.; Badre, D.

10.1101/211375 — neuroscience — Posted on 2018-06-23

584 Estimates of Introgression as a Function of Pairwise Distances

Pfeifer, B.; Kapan, D. D.

10.1101/154377 — bioinformatics — Posted on 2018-06-23

585 Demographic inference in a spatially-explicit ecological model from genomic data: a proof of concept for the Mojave Desert Tortoise

Ashander, J.; Ralph, P.; McCartney-Melstad, E.; Shaffer, H. B.

10.1101/354530 — genomics — Posted on 2018-06-23

586 Parameterising continuum models of heat transfer in heterogeneous living skin using experimental data

McInerney, S.; Carr, E.; Simpson, M. J.

10.1101/354563 — biophysics — Posted on 2018-06-23

587 Assessment of the effects of transthyretin peptide inhibitors in Drosophila models of neuropathic ATTR

Saelices, L.; Pokrzywa, M.; Pawelek, K.; Eisenberg, D.

10.1101/354555 — neuroscience — Posted on 2018-06-23

588 A zombie LIF gene in elephants is up-regulated by TP53 to induce apoptosis in response to DNA damage

Vazquez, J. M.; Sulak, M.; Chigurupati, S.; Lynch, V. J.

10.1101/187922 — evolutionary biology — Posted on 2018-06-22

589 A new calcium-activated dynein adaptor protein, CRACR2a, regulates clathrin-independent endocytic traffic in T cells

Wang, Y.; Huynh, W.; Skokan, T.; Vale, R.

10.1101/354498 — cell biology — Posted on 2018-06-22

590 Innovative method for reducing uninformative calls in non-invasive prenatal testing

Budis, J.; Gazdarica, J.; Radvanszky, J.; Szucs, G.; Kucharik, M.; Strieskova, L.; Gazdaricova, I.; Harsanyova, M.; Duris, F.; Minarik, G.; Sekelska, M.; Nagy, B.; Turna, J.; Szemes, T.

10.1101/353862 — bioinformatics — Posted on 2018-06-22

591 Motor learning decline with age is related to differences in the explicit memory system

Wolpe, N.; Ingram, J. N.; Tsvetanov, K. A.; Henson, R. N.; Kievit, R. A.; Wolpert, D. M.; Cambridge Centre for Ageing and Neuroscience, ; Rowe, J. B.

10.1101/353870 — neuroscience — Posted on 2018-06-22

592 Local adaptation and sexual selection drive intra-island diversification in a songbird lineage: differential divergence in autosomes and sex chromosomes.

Bourgeois, Y.; Bertrand, J.; Delahaie, B.; Holota, H.; Thebaud, C.; Mila, B.

10.1101/353771 — evolutionary biology — Posted on 2018-06-22

593 Storage length and temperature influence infectivity and spore yield of two common Daphnia parasites

Duffy, M. A.; Hunsberger, K. K.

10.1101/354522 — epidemiology — Posted on 2018-06-22

594 DeepTACT: predicting high-resolution chromatin contacts via bootstrapping deep learning

Li, W.; Wong, W. H.; Jiang, R.

10.1101/353284 — bioinformatics — Posted on 2018-06-22

595 Using fuzzy sets to deal with uncertainty in single-species, single-season occupancy models.

McCallum, M. L.

10.1101/353623 — ecology — Posted on 2018-06-22

596 MaGIC: a machine learning tool set and web application for monoallelic gene inference from chromatin

Vinogradova, S.; Saksena, S.; Ward, H.; Vigneau, S.; Gimelbrant, A.

10.1101/353359 — bioinformatics — Posted on 2018-06-22

597 Reparametrizing the Sigmoid Model of Gene Regulation for Bayesian Inference

Modrak, M.

10.1101/352070 — bioinformatics — Posted on 2018-06-22

598 A rapid visuomotor response on the human upper limb is selectively influenced by implicit, but not explicit, motor learning

Gu, C.; Pruszynski, J. A.; Gribble, P.; Corneil, B. D.

10.1101/354381 — neuroscience — Posted on 2018-06-22

599 Evolution of specialization in heterogeneous environments: equilibrium between selection, mutation and migration

Mirrahimi, S.; Gandon, S.

10.1101/353458 — evolutionary biology — Posted on 2018-06-22

600 A deep learning approach to pattern recognition for short DNA sequences

Busia, A.; Dahl, G. E.; Fannjiang, C.; Alexander, D. H.; Dorfman, E.; Poplin, R.; McLean, C. Y.; Chang, P.-C.; DePristo, M.

10.1101/353474 — bioinformatics — Posted on 2018-06-22

601 Small RNAs from the plant pathogenic fungus Sclerotinia sclerotiorum highlight candidate host target genes associated with quantitative disease resistance

Derbyshire, M. C.; Mbengue, M.; Barascud, M.; Navaud, O.; Raffaele, S.

10.1101/354076 — plant biology — Posted on 2018-06-22

602 Extrastriate Connectivity of the Mouse Dorsal Lateral Geniculate Thalamus

Bienkowski, M. S.; Benavidez, N. L.; Wu, K.; Gou, L.; Becerra, M.; Dong, H.-w.

10.1101/351528 — neuroscience — Posted on 2018-06-22

603 Angular Substrate Preference and Molting Behavior of the Giant River Prawn, Macrobrachium rosenbergii, and its Implications for Cannibalism Management

McCallum, M. L.; Weston, S. D.; Tilahun, Y.

10.1101/354472 — animal behavior and cognition — Posted on 2018-06-22

604 An automated, high-throughput method for standardizing image color profiles to improve image-based plant phenotyping

Berry, J. C.; Fahlgren, N.; Pokorny, A. A.; Bart, R.; Veley, K. M.

10.1101/354274 — plant biology — Posted on 2018-06-22

605 Inhibitory and excitatory populations in parietal cortex are equally selective for decision outcome in both novices and experts

Najafi, F.; Elsayed, G. F.; Pnevmatikakis, E.; Cunningham, J.; Churchland, A. K.

10.1101/354340 — neuroscience — Posted on 2018-06-22

606 SNP Selection and Concordance in Consumer Genetics Testing

Thompson, J. F.

10.1101/352732 — genomics — Posted on 2018-06-22

607 Changes in endosymbiont complexity drive host-level compensatory adaptations in cicadas

Campbell, M. A.; Łukasik, P.; Meyer, M. M.; Buckner, M.; Simon, C.; Veloso, C.; Michalik, A.; McCutcheon, J. P.

10.1101/353573 — evolutionary biology — Posted on 2018-06-22

608 Mitochondrial genomes and phylogenetic analysis of Central American weakly-electric fishes: Apteronotus rostratus, Brachyhypopomus occidentalis and Sternopygus dariensis

Aguilar, C.; Miller, M. J.; Loaiza, J. R.; Krahe, R.; De Leon, L. F.

10.1101/353565 — evolutionary biology — Posted on 2018-06-22

609 A Continuous-Time Semi-Markov Model for Animal Movement in a Dynamic Environment

Johnson, D. S.; Pelland, N. A.; Sterling, J. T.

10.1101/353516 — ecology — Posted on 2018-06-22

610 DeepImpute: an accurate, fast and scalable deep neural network method to impute single-cell RNA-Seq data

Arisdakessian, C.; Poirion, O.; Yunits, B.; Zhu, X.; Garmire, L.

10.1101/353607 — bioinformatics — Posted on 2018-06-22

611 Compendiums of Cancer Transcriptome for Machine Learning Applications

Lim, S. B.; Tan, S. J.; Lim, W.-T.; Lim, C. T.

10.1101/353698 — bioinformatics — Posted on 2018-06-22

612 A Moment-Based Maximum Entropy Model for Fitting Higher-Order Interactions in Neural Data

Cayco-Gajic, N. A.; Zylberberg, J.; Shea-Brown, E.

10.1101/353656 — neuroscience — Posted on 2018-06-22

613 Brr2 is a splicing fidelity factor

Mayerle, M.; Guthrie, C.

10.1101/354514 — molecular biology — Posted on 2018-06-22

614 5′ Modifications Improve Potency and Efficacy of DNA Donors for Precision Genome Editing

Ghanta, K. S.; Dokshin, G. A.; Mir, A.; Krishnamurthy, P. M.; Gneid, H.; Edraki, A.; Watts, J. K.; Sontheimer, E. J.; Mello, C. C.

10.1101/354480 — molecular biology — Posted on 2018-06-22

615 Isolation, Development, and Genomic Analysis of Bacillus megaterium SR7 for Growth and Metabolite Production Under Supercritical Carbon Dioxide

Freedman, A. J. E.; Peet, K. C.; Boock, J. T.; Penn, K.; Prather, K. L. J.; Thompson, J. R.

10.1101/352807 — microbiology — Posted on 2018-06-22

616 Nucleotide and codon background mutability shape cancer mutational spectrum and advance driver mutation identification

Li, M.; Brown, A.-L.; Goncearenco, A.; Panchenko, A. R.

10.1101/354506 — cancer biology — Posted on 2018-06-22

617 Light dynamically regulates growth rate and cellular organisation of the Arabidopsis root meristem.

Blein, T.; Duerr, J.; Pasternak, T.; Haser, T.; Falk, T.; Liu, K.; Ditengou, F. A.; Ronneberger, O.; Palme, K.

10.1101/353987 — plant biology — Posted on 2018-06-22

618 Universality of the developmental origins of diverse functional maps in the visual cortex

Song, M.; Jang, J.; Kim, G.; Paik, S.-B.

10.1101/354126 — neuroscience — Posted on 2018-06-22

619 Not scene learning, but attentional processing is superior in team sport athletes and action video game players

Schmidt, A.; Geringswald, F.; Sharifian, F.; Pollmann, S.

10.1101/353953 — neuroscience — Posted on 2018-06-22

620 Electrocorticographic responses to time-compressed speech vary across the cortical auditory hierarchy

Davidesco, I.; Thesen, T.; Honey, C. J.; Melloni, L.; Doyle, W.; Devinsky, O.; Ghitza, O.; Schroeder, C.; Poeppel, D.; Hasson, U.

10.1101/354464 — neuroscience — Posted on 2018-06-22

621 An essential mycolate remodeling program for mycobacterial adaptation in host cells

Peterson, E. J. R.; Bailo, R.; Rothchild, A. C.; Arrieta-Ortiz, M.; Kaur, A.; Pan, M.; Mai, D.; Cooper, C.; Aderem, A.; Bhatt, A.; Baliga, N.

10.1101/354431 — microbiology — Posted on 2018-06-22

622 Trans-splicing of mRNAs links gene transcription to translational control regulated by mTOR

Danks, G.; Galbiati, H.; Raasholm, M.; Torres Cleuren, Y. N.; Valen, E.; Navratilova, P.; Thompson, E. M.

10.1101/353979 — genomics — Posted on 2018-06-22

623 Angular Substrate Preference and Molting Behavior of the Giant River Prawn, Macrobrachium rosenbergii and its Implications for Cannibalism Management

McCallum, M. L.; Tilahun, Y.; Weston, S. D.

10.1101/354472 — animal behavior and cognition — Posted on 2018-06-22

624 Chronic Electrical Stimulation Promotes the Excitability and Plasticity of ESC-derived Neurons following Glutamate-induced Inhibition In vitro

Latchoumane, C.-F. V.; Jackson, L.; Eslampanah Sendi, M. S.; Tehrani, K. F.; Mortensen, L. J.; Stice, S. L.; Ghovanloo, M.; Karumbaiah, L.

10.1101/354191 — neuroscience — Posted on 2018-06-22

625 Microglia-triggered hyperexcitability in the cerebellum depresses animal behaviors

Yamamoto, M.; Kim, M.; Imai, H.; Ohtsuki, G.

10.1101/353730 — neuroscience — Posted on 2018-06-22

626 Dual RNAseq of human leprosy lesions identifies bacterial determinants linked to host immune response

Montoya, D.; Andrade, P. R.; Silva, B. J. A.; Teles, R. M. B.; Bryson, B.; Sadanand, S.; Noel, T.; Lu, J.; Sarno, E.; Arnvig, K. B.; Young, D.; Lahiri, R.; Williams, D. L.; Fortune, S.; Bloom, B. R.; Pellegrini, M.; Modlin, R. L.

10.1101/354407 — microbiology — Posted on 2018-06-22

627 Co-culture of soil biofilm isolates enables the discovery of novel antibiotics

Gao, C.-H.; Cai, P.; Li, Z.; Wu, Y.; Huang, Q.

10.1101/353755 — microbiology — Posted on 2018-06-22

628 Transcriptome-wide profiling of mammalian spliceosome and branchpoints with iCLIP

Briese, M.; Haberman, N.; Sibley, C.; Chakrabarti, A.; Wang, Z.; Konig, J.; Perera, D.; Wickramasinghe, V.; Venkitaraman, A.; Luscombe, N.; Smith, C.; Curk, T.; Ule, J.

10.1101/353599 — genomics — Posted on 2018-06-22

629 Evaluating Cost-Effective Methods for Rapid and Repeatable National Scale Detection and Mapping of Invasive Species Spread

Kost, R. A.; Brook, R.

10.1101/353722 — ecology — Posted on 2018-06-22

630 Exocyst Dynamics During Vesicle Tethering and Fusion

Ahmed, S. M.; Nishida-Fukuda, H.; Li, Y.; McDonald, W. H.; Gradinaru, C.; Macara, I.

10.1101/354449 — cell biology — Posted on 2018-06-22

631 Cancer-associated mRNAs regulated by the Helix-Loop-Helix motif of human EIF3A

Volegova, M.; Cate, J.

10.1101/354399 — cancer biology — Posted on 2018-06-22

632 Microbial interkingdom interactions in roots promote Arabidopsis survival

Duran, P.; Thiergart, T.; Garrido-Oter, R.; Agler, M.; Kemen, E.; Schulze-Lefert, P.; Hacquard, S.

10.1101/354167 — microbiology — Posted on 2018-06-22

633 The aryl hydrocarbon receptor and interferon gamma generate antiviral states via transcriptional repression

Bieniasz, P. D.; Kueck, T.; Cassella, E.; Holler, J.; Kim, B.

10.1101/353789 — immunology — Posted on 2018-06-22

634 Cross-platform meta-analysis reveals common matrisome variation associated with tumor genotypes and immunophenotypes in human cancers

Lim, S. B.; Tan, S. J.; Lim, W.-T.; Lim, C. T.

10.1101/353706 — genomics — Posted on 2018-06-22

635 Nicastrin haploinsufficiency alters expression of type-I interferon-stimulated genes in two immortalized human cell lines

Cao, L.; Morales-Heil, D.; Roberson, E. D. O.

10.1101/353482 — cell biology — Posted on 2018-06-22

636 Memory for non-painful auditory items is influenced by whether they are experienced in a context involving painful electrical stimulation

Vogt, K. M.; Norton, C. M.; Speer, L. E.; Tremel, J. J.; Ibinson, J. W.; Reder, L. M.; Fiez, J. A.

10.1101/341891 — neuroscience — Posted on 2018-06-22

637 Draft Genome Sequence of the Asian Pear Scab Pathogen, Venturia nashicola

Johnson, S. J. V.; Jones, D.; Thrimawithana, A. H.; Deng, C. H.; Bowen, J. K.; Mesarich, C. H.; Ishii, H.; Bus, V. G. M.; Won, K.; Plummer, K. M.

10.1101/354241 — genomics — Posted on 2018-06-22

638 A Drosophila CRISPR/Cas9 toolkit for conditionally manipulating gene expression in the prothoracic gland as a test case for polytene tissues

King-Jones, K.; Huynh, N.

10.1101/354258 — genetics — Posted on 2018-06-22

639 Disease transmission mode has little effect on simulated canine rabies elimination

Ward, J. K. R.; Smith, G. C.; Massei, G.

10.1101/354175 — ecology — Posted on 2018-06-22

640 A shared limiting resource leads to competitive exclusion in a cross-feeding system

Hammarlund, S. P.; Chacon, J. M.; Harcombe, W. R.

10.1101/354282 — ecology — Posted on 2018-06-22

641 Identification of STK25 as a direct activator of LATS signaling

Lim, S.; Mudianto, T.; Mustaly, H.; Mauricio, I. P. M.; Vittoria, M. A.; Quinton, R. J.; Howell, B. W.; Cornils, H.; Ganem, N. J.

10.1101/354233 — cell biology — Posted on 2018-06-22

642 Insights on protein thermal stability: a graph representation of molecular interactions

Miotto, M.; Olimpieri, P. P.; Di Rienzo, L.; Ambrosetti, F.; Corsi, P.; Lepore, R.; Tartaglia, G. G.; Milanetti, E.

10.1101/354266 — bioinformatics — Posted on 2018-06-22

643 L-norvaline reverses cognitive decline and synaptic loss in a murine model of Alzheimer’s disease

Polis, B.; Srikanth, K. D.; Elliott, E.; Gil-Henn, H.; Samson, A. O.

10.1101/354290 — neuroscience — Posted on 2018-06-22

644 Inhibitory and excitatory populations in parietal cortex are equally selective for decision outcome in both novices and experts

Najafi, F.; Elsayed, G. F.; Pnevmatikakis, E.; Cunningham, J.; Churchland, A. K.

10.1101/354340 — neuroscience — Posted on 2018-06-22

645 The foliar endophyte Phialocephala scopiformis DAOMC 229536 secretes enzymes supporting growth on wood as sole carbon source

Bhatnagar, J. M.; Sabat, G.; Cullen, D.

10.1101/354365 — microbiology — Posted on 2018-06-22

646 Sequence variability, constraint and selection in the CD163 gene in pigs

Johnsson, M.; Ros-Freixedes, R.; Gorjanc, G.; Campbell, M. A.; Naswa, S.; Kelly, K.; Lightner, J.; Rounsley, S.; Hickey, J. M.

10.1101/354159 — genomics — Posted on 2018-06-22

647 Embryo timelapses can be compiled and quantified to understand canonical histone dynamics across multiple cell cycles.

Smith, L.; Maddox, P. S.

10.1101/316281 — developmental biology — Posted on 2018-06-22

648 Chemically Accurate Relative Folding Stability of RNA Hairpins from Molecular Simulations

Smith, L. G.; Tan, Z.; Spasic, A.; Dutta, D.; Salas-Estrada, L. A.; Grossfield, A.; Mathews, D.

10.1101/354332 — biophysics — Posted on 2018-06-22

649 Climate Change Influences the Japanese Cedar (Cryptomeria japonica) Pollen Count and Sensitization Rate in South Korea

JEJU NATIONAL UNIVERSITY COLLEGE OF MEDICINE, ; Song, J.-K.; Kang, J. w.; Hong, S.-C.; Kim, J. H.; Park, D.; Lee, H.-S.; Jeong, J.; Seo, K. B.; LEE, K. H.

10.1101/340398 — epidemiology — Posted on 2018-06-22

650 The global burden of trichiasis in 2016

Flueckiger, R. M.; Courtright, P.; Abdala, M.; Abdou, A.; Abdulnafea, Z.; Al-Khatib, T. K.; Amer, K.; Amiel, O. N.; Awoussi, S.; Bakhtiari, A.; Batcho, W.; Bella, A. L.; Bennawi, K. H.; Brooker, S. J.; Chu, B. K.; Dejene, M.; Dezoumbe, D.; Elshafie, B. E.; Elvis, A. A.; Fabrice, D. N.; Omar, F. J.; Francois, M.; Francois, D.; Garap, J.; Gichangi, M.; Goepogui, A.; Hammou, J.; Kadri, B.; Kabona, G.; Kabore, M.; Kalua, K.; Kamugisha, M.; Kebede, B.; Keita, K.; Khan, A. A.; Kiflu, G.; Mackline, G.; Macleod, C.; Manangazira, P.; Masika, M. P.; Massangaie, M.; Mduluza, T. F.; Meno, N.; Midzi, N.; M

10.1101/348995 — epidemiology — Posted on 2018-06-22

651 Spatial-temporal clustering analysis of yaws on Lihir Island, Papua New Guinea to enhance planning and implementation of eradication programs

Mooring, E. Q.; Mitja, O.; Murray, M.

10.1101/352542 — epidemiology — Posted on 2018-06-22

652 Wolbachia modifies thermal preference in Drosophila melanogaster

Truitt, A. M.; Kapun, M.; Kaur, R.; Miller, W. J.

10.1101/353292 — microbiology — Posted on 2018-06-22

653 The mirtron miR-1010 functions in concert with its host gene SKIP to maintain synaptic homeostasis

Amourda, C.; Saunders, T. E.

10.1101/353888 — developmental biology — Posted on 2018-06-22

654 Mechanistic Insights into the Cis- and Trans-acting Deoxyribonuclease Activities of Cas12a

Swarts, D.; Jinek, M.

10.1101/353748 — biochemistry — Posted on 2018-06-22

655 Genetic differences in the behavioral organization of binge eating, conditioned food reward, and compulsive-like eating in C57BL/6J and DBA/2J strains

Babbs, R. K.; Kelliher, J. C.; Scotellaro, J. L.; Luttik, K. P.; Mulligan, M. K.; Bryant, C. D.

10.1101/190827 — animal behavior and cognition — Posted on 2018-06-22

656 Insights into the mutational burden of human induced pluripotent stem cells using an integrative omics approach

D'Antonio, M.; Benaglio, P.; Jakubosky, D. A.; Greenwald, W. W.; Matsui, H.; Donovan, M. K. R.; Li, H.; Smith, E. N.; D'Antonio-Chronowska, A.; Frazer, K. A.

10.1101/334870 — genomics — Posted on 2018-06-22

657 Prioritizing putative influential genes in early life cardiovascular disease susceptibility by applying tissue-specific Mendelian randomization

Taylor, K.; Davey Smith, G.; Relton, C. L.; Gaunt, T. R.; Richardson, T. G.

10.1101/298687 — genetics — Posted on 2018-06-22

658 FENNEC - Functional Exploration of Natural Networks and Ecological Communities

Ankenbrand, M. J.; Hohlfeld, S. C. Y.; Weber, L.; Foerster, F.; Keller, A.

10.1101/194308 — ecology — Posted on 2018-06-22

659 Modulating long-range energetics via helix stabilization: a case study using T4 lysozyme

Rosemond, S. N.; Hamadani, K. M.; Cate, J. H. D.; Marqusee, S.

10.1101/353649 — biophysics — Posted on 2018-06-22

660 Plasmodium falciparum schizont stage transcriptome variation among clinical isolates and laboratory-adapted clones

Tarr, S. J.; Diaz-Ingelmo, O.; Stewart, L. B.; Hocking, S. E.; Murray, L.; Duffy, C. W.; Otto, T. D.; Chappell, L.; Rayner, J. C.; Awandare, G. A.; Conway, D. J.

10.1101/329532 — cell biology — Posted on 2018-06-22

661 Metastable XBP1u transmembrane domain mediates insertion into the ER membrane and intramembrane proteolysis by the signal peptide peptidase

Yucel, S. S.; Stelzer, W.; Lorenzoni, A.; Wozny, M.; Langosch, D.; Lemberg, M. K.

10.1101/322107 — cell biology — Posted on 2018-06-22

662 Capturing variation impact on molecular interactions: the IMEx Consortium mutations data set

The IMEx Consortium curators, ; del-Toro, N.; Duesbury, M.; Koch, M.; Perfetto, L.; Shrivastava, A.; Ochoa, D.; Wagih, O.; Pinero, J.; Kotlyar, M.; Chiara, P.; Beltrao, P.; Furlong, L. I.; Jurisica, I.; Hermjakob, H.; Orchard, S.; Porras Millan, P.

10.1101/346833 — bioinformatics — Posted on 2018-06-22

663 Dynamic Prediction During Perception of Everyday Events

Eisenberg, M. L.; Zacks, J. M.; Flores, S.

10.1101/348946 — neuroscience — Posted on 2018-06-22

664 A novel co-segregating DCTN1 splice site variant in a family with Bipolar Disorder may hold the key to understanding the etiology

Hallen, A.; Cooper, A. J. L.

10.1101/354100 — genetics — Posted on 2018-06-22

665 DARPins recognizing mTFP1 as novel reagents for in vitro and in vivo protein manipulations

Vigano, M. A.; Bieli, D.; Schaefer, J. V.; Jakob, R. P.; Matsuda, S.; Maier, T.; Plueckthun, A.; Affolter, M.

10.1101/354134 — cell biology — Posted on 2018-06-22

666 Mutations in nucleoporin NUP88 cause lethal fetal akinesia deformation sequence

Bonnin, E.; Cabochette, P.; Filosa, A.; Juehlen, R.; Komatsuzaki, S.; Hezwani, M.; Dickmanns, A.; Martinelli, V.; Vermeersch, M.; Supply, L.; Martins, N.; Pirenne, L.; Ravenscroft, G.; Lombard, M.; Port, S. A.; Spillner, C.; Janssens, S.; Roets, E.; Van Dorpe, J.; Lammens, M.; Kehlenbach, R. H.; Ficner, R.; Laing, N.; Hoffmann, K.; Vanhollebeke, B.; Fahrenkrog, B.

10.1101/347179 — cell biology — Posted on 2018-06-22

667 Time-delay model of perceptual decision making in cortical networks

Bielczyk, N.; Piskała, K.; Płomecka, M.; Radzinski, P.; Todorova, L.; Forys, U.

10.1101/348276 — neuroscience — Posted on 2018-06-22

668 Molecular basis for a novel systemic form of human hereditary apoA-I amyloidosis with vision loss

Morgado, I.; Rothschild, P.-R.; Panahi, A.; Aldigier, J.-C.; Burwash, A. G.; Das, M.; Colombat, M.; Frouget, T.; Rerolle, J.-P.; Paraf, F.; Rioux-Leclercq, N.; Goujon, J.-M.; Beugnet, C.; Durrbach, A.; Samuel, D.; Brezin, A.; Straub, J. E.; Gursky, O.; Valleix, S.

10.1101/354001 — molecular biology — Posted on 2018-06-22

669 Plasmodium-specific atypical memory B cells are not part of the long-lived memory response

Perez-Mazliah, D.; Gardner, P. J.; Schweighoffer, E.; McLaughlin, S.; Hosking, C.; Tumwine, I.; Davis, R. S.; Potocnik, A. J.; Tybulewicz, V.; langhorne, j.

10.1101/350819 — microbiology — Posted on 2018-06-22

670 Defending the Undefendable: Male Territorial Behaviour and Mating System in Monogamous Primates

Dunbar, R. I. M.

10.1101/354118 — ecology — Posted on 2018-06-22

671 Mammalian CST averts replication failure by preventing G-quadruplex accumulation

Liu, Y.; Zhang, M.; Wang, B.; Xiao, Y.; Li, T.; Geng, X.; Li, G.; Liu, Q.; Price, C.; Wang, F.

10.1101/354050 — molecular biology — Posted on 2018-06-22

672 Growth differentiation factor-15 regulates oxLDL-induced lipid homeostasis and autophagy in human macrophages

Ackermann, K.; Bonaterra, G. A.; Kinscherf, R.; Schwarz, A.

10.1101/354043 — cell biology — Posted on 2018-06-22

673 Genome-wide CNV study and functional evaluation identified CTDSPL as tumour suppressor gene for cervical cancer

Chen, D.; Wang, S.; Li, Z.; Cui, T.; Chen, Y.; Song, J.; Magnusson, P. K.; Wang, H.; Zhang, D.; Gyllensten, U.

10.1101/353391 — cancer biology — Posted on 2018-06-22

674 Streptococcal dTDP-L-rhamnose biosynthesis enzymes: functional characterization and lead compound identification

van der Beek, S. L.; Zorzoli, A.; Canak, E.; Chapman, R. N.; Meyer, B. H.; Boons, G.-J. P. H.; Dorfmueller, H. C.; van Sorge, N. M.

10.1101/312157 — microbiology — Posted on 2018-06-22

675 Predicting bacterial growth conditions from mRNA and protein abundances

Caglar, M. U.; Hockenberry, A. J.; Wilke, C. O.

10.1101/353433 — systems biology — Posted on 2018-06-22

676 A computational model of task allocation in social insects: ecology and interactions alone can drive specialisation

Chen, R.; Meyer, B.; Garcia, J.

10.1101/315846 — ecology — Posted on 2018-06-22

677 Hair Follicle Epidermal Stem Cells Define a Niche for Tactile Sensation

Cheng, C.-C.; Tsutsui, K.; Taguchi, T.; Sanzen, N.; Nakagawa, A.; Kakiguchi, K.; Yonemura, S.; Tanegashima, C.; Keeley, S. D.; Kiyonari, H.; Furuta, Y.; Tomono, Y.; Watt, F. M.; Fujiwara, H.

10.1101/353490 — developmental biology — Posted on 2018-06-22

678 Efficient single-copy HDR by 5’ modified long dsDNA donors

Gutierrez-Triana, J. A.; Thumberger, T.; Tavhelidse, T.; Thomas, I.; Wittbrodt, B.; Kellner, T.; Tsingos, E.; Wittbrodt, J.

10.1101/348243 — genetics — Posted on 2018-06-22

679 Luigi: Large-scale histopathological image retrieval system using deep texture representations

Komura, D.; Fukuta, K.; Tominaga, K.; Kawabe, A.; Koda, H.; Suzuki, R.; Konishi, H.; Umezaki, T.; Harada, T.; Ishikawa, S.

10.1101/345785 — pathology — Posted on 2018-06-22

680 Network Structure and Social Complexity in Primates

Dunbar, R.

10.1101/354068 — animal behavior and cognition — Posted on 2018-06-22

681 Yeast replicative aging leads to permanent cell cycle arrest in G1 effectuated by the start repressor Whi5

Yang, J.; Wang, Z.; Liu, X.; Li, H.; Ouyang, Q.

10.1101/353664 — cell biology — Posted on 2018-06-22

682 A learning-based framework for miRNA-disease association prediction using neural networks

Peng, J.; Hui, W.; Li, Q.; Chen, B.; Jiang, Q.; Wei, Z.; Shang, X.

10.1101/276048 — bioinformatics — Posted on 2018-06-22

683 Visualizing and interpreting single-cell gene expression datasets with Similarity Weighted Nonnegative Embedding

Wu, Y.; Tamayo, P.; Zhang, K.

10.1101/276261 — bioinformatics — Posted on 2018-06-22

684 RiboTag translatomic profiling of Drosophila oenocytes under aging and oxidative stress

Huang, K.; Chen, W.; Zhu, F.; Bai, H.

10.1101/272179 — genomics — Posted on 2018-06-22

685 Stochastic character mapping of state-dependent diversification reveals the tempo of evolutionary decline in self-compatible Onagraceae lineages

Freyman, W.; Hoehna, S.

10.1101/210484 — evolutionary biology — Posted on 2018-06-22

686 On the importance of scales when studying adaptive evolution

Perrier, C.; Charmantier, A.

10.1101/269175 — evolutionary biology — Posted on 2018-06-22

687 Cooption of antagonistic RNA-binding proteins establishes cell hierarchy in Drosophila neuro-developmental tumors

Genovese, S.; Clement, R.; Gaultier, C.; Besse, F.; Narbonne-Reveau, K.; Daian, F.; Foppolo, S.; Luis, N. M.; Maurange, C.

10.1101/353508 — developmental biology — Posted on 2018-06-22

688 Atomic force microscopy reveals new biomarkers for monitoring subcellular changes in oxidative injury: neuroprotective effects of quercetin at the nanoscale

Jazvins?ak Jembrek, M.; Vlaini?, J.; ?ade?, V.; Segota, S.

10.1101/353557 — biophysics — Posted on 2018-06-22

689 Clogging-free continuous operation with whole blood in a radial pillar device (RAPID)

Mehendale, N. D.; Sharma, O.; Pandey, S.; Paul, D.

10.1101/197749 — physiology — Posted on 2018-06-22

690 The effect of assortative mixing on stability of low helminth transmission levels and on the impact of mass drug administration: model explorations for onchocerciasis

de Vos, A. S.; Stolk, W. A.; de Vlas, S. J.; Coffeng, L. E.

10.1101/354084 — epidemiology — Posted on 2018-06-22

691 Miniscule differences between the sex chromosomes in the giant genome of a salamander, Ambystoma mexicanum

Keinath, M. C.; Timoshevskaya, N.; Timoshevskiy, V. A.; Voss, S. R.; Smith, J. J.

10.1101/354092 — evolutionary biology — Posted on 2018-06-22

692 Kluyveromyces marxianus as a robust synthetic biology platform host

Cernak, P.; Estrela, R.; Poddar, S.; Skerker, J.; Cheng, Y.-F.; Carlson, A.; Chen, B.; Glynn, V.; Furlan, M.; Ryan, O.; Donnelly, M.; Arkin, A. P.; Taylor, J.; Cate, J.

10.1101/353680 — synthetic biology — Posted on 2018-06-22

693 Root Colonization and Growth Promotion of Soybean, Wheat and Chinese Cabbage by Bacillus cereus YL6

Ku, Y.; Xu, G.; Wang, F.; Liu, H.; Yang, X.; Tian, X.; Cao, C.

10.1101/353946 — microbiology — Posted on 2018-06-22

694 Food web networks shift across a precipitation gradient due to changes in community composition and species interactions.

Guzman, L. M.; Vanschoenwinkel, B.; Farjalla, V.; Poon, A.; Srivastava, D. S.

10.1101/353920 — ecology — Posted on 2018-06-22

695 Priming of leaf litter decomposition by algae seems of minor importance in natural streams during autumn

Elosegi, A.; Nicolas, A.; Richardson, J. S.

10.1101/353938 — ecology — Posted on 2018-06-22

696 Over 2.5 million COI sequences in GenBank and growing

Porter, T. M.; Hajibabaei, M.

10.1101/353904 — ecology — Posted on 2018-06-22

697 Conditioned increase of locomotor activity induced by haloperidol

De la Casa, L. G.; Carcel, L.; Ruiz-Salas, J. C.; Vicente, L.; Mena, A.

10.1101/353912 — animal behavior and cognition — Posted on 2018-06-22

698 Nucleotides inclusion in pet food: effect of thermic treatment and shelf-life

Russo, N.; Candellone, A.; Galaverna, D.; Prola, L.

10.1101/353813 — scientific communication and education — Posted on 2018-06-22

699 Effects of different pretreatments on flavonoids and antioxidant activity of Dryopteris erythrosora leave

Wang, X.; Zhang, x.; wang, m.; Cao, J.; Xiao, J.; Wang, Q.

10.1101/353839 — plant biology — Posted on 2018-06-22

700 The Effect of Aldehyde Dehydrogenase Activator, Alda-1(R), on the Ethanol-induced Brain Damage in a Rat of Binge Ethanol Intoxication.

Kim, C.; Hwang, S.; Choi, H. J.; Lim, T. H.; Kang, J.-s.

10.1101/353854 — neuroscience — Posted on 2018-06-22

701 Optimal growth conditions and nutrient degradation characteristics of an aerobic denitrifying bacterium

LING, S.; Juanjuan, S.

10.1101/353847 — microbiology — Posted on 2018-06-22

702 In vitro evaluation of the decontamination effect of cold argon plasma on selected bacteria frequently encountered in small animal bite injuries

Winter, S.; Meyer-Lindenberg, A.; Wolf, G.; Reese, S.; Nolff, M. C.

10.1101/353821 — microbiology — Posted on 2018-06-22

703 Cerebral organoids at the air-liquid interface generate diverse nerve tracts with functional output

Giandomenico, S. L.; Mierau, S. B.; Gibbons, G. M.; Wenger, L. M.; Masullo, L.; Sit, T.; Sutcliffe, M.; Boulanger, J.; Tripodi, M.; Derivery, E.; Paulsen, O.; Lakatos, A.; Lancaster, M.

10.1101/353151 — neuroscience — Posted on 2018-06-22

704 A novel mechanism of gland formation in zebrafish involving transdifferentiation of renal epithelial cells and live cell extrusion

Naylor, R. W.; Davidson, A. J.

10.1101/353524 — developmental biology — Posted on 2018-06-22

705 GGA2 and RAB13 regulate activity-dependent β1-integrin recycling

Sahgal, P.; Alanko, J.; Paatero, I.; Arjonen, A.; Pietila, M.; Rokka, A.; Ivaska, J.

10.1101/353086 — cell biology — Posted on 2018-06-22

706 Optimal data-driven parameterization of coiled coils

Guzenko, D.; Strelkov, S. V.

10.1101/353532 — bioinformatics — Posted on 2018-06-22

707 Nicastrin haploinsufficiency alters expression of type-I interferon-stimulated genes in two immortalized human cell lines

Cao, L.; Morales-Heil, D.; Roberson, E. D. O.

10.1101/353482 — cell biology — Posted on 2018-06-22

708 CDeep3M - Plug-and-Play cloud based deep learning for image segmentation of light, electron and X-ray microscopy

Haberl, M.; Churas, C.; Tindall, L.; Boassa, D.; Phan, S.; Bushong, E. A.; Madany, M.; Akay, R.; Deerinck, T. J.; Peltier, S. T.; Ellisman, M. H.

10.1101/353425 — cell biology — Posted on 2018-06-21

709 Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments

Clarke, E. L.; Taylor, L. J.; Zhao, C.; Connell, J.; Bushman, F. D.; Bittinger, K.

10.1101/326363 — bioinformatics — Posted on 2018-06-21

710 Smoking induces coordinated DNA methylation and gene expression changes in adipose tissue with consequences for metabolic health

Tsai, P.-C.; Glastonbury, C. A.; Eliot, M. N.; Bollepalli, S.; Yet, I.; Castillo-Fernandez, J. E.; Carnero-Montoro, E.; Hardiman, T.; Martin, T. C.; Vickers, A.; Mangino, M.; Ward, K.; Pietiläinen, K. H.; Deloukas, P.; Spector, T. D.; Vinuela, A.; Loucks, E. B.; Ollikainen, M.; Kelsey, K. T.; Small, K. S.; Bell, J. T.

10.1101/353581 — genomics — Posted on 2018-06-21

711 Divergence in female damselfly sensory structures is consistent with a species recognition function but shows no evidence of reproductive character displacement

Barnard, A. A.; Masly, J. P.

10.1101/285833 — evolutionary biology — Posted on 2018-06-21

712 Transcriptional Activation of Elephant Shark Mineralocorticoid Receptor by Corticosteroids, Progestins and Spironolactone

Katsu, Y.; Kohno, S.; Oka, K.; Lin, X.; Otake, S.; Pillai, N. E.; Takagi, W.; Hyodo, S.; Venkatesh, B.; Baker, M. E.

10.1101/265348 — evolutionary biology — Posted on 2018-06-21

713 Detection and benchmarking of somatic mutations in cancer genomes using RNA-seq data

Coudray, A.; Battenhouse, A. M.; Bucher, P.; Iyer, V. R.

10.1101/249219 — cancer biology — Posted on 2018-06-21

714 Can secondary contact following range expansion be distinguished from barriers to gene flow?

Bertl, J.; Ringbauer, H.; Blum, M. G. B.

10.1101/043398 — evolutionary biology — Posted on 2018-06-21

715 Complex polymorphisms in endocytosis genes suggest alpha-cyclodextrin as a treatment for breast cancer

Wittkowski, K. M.; Dadurian, C.; Seybold, M. P.; Kim, H. S.; Hoshino, A.; Lyden, D.

10.1101/152405 — cancer biology — Posted on 2018-06-21

716 Isolation and Purification of Active Antimicrobial Peptides from Hermetia illucens L., and Its Effects on CNE2 Cells

Tian, Z.; Feng, Q.; Sun, H.; Liao, Y.; Du, L.; Yang, R.; Li, X.; Yang, Y.; Xia, Q.

10.1101/353367 — immunology — Posted on 2018-06-21

717 Regulation of DNA methylation on key parasitism genes of Cysticercus cellulosae revealed by integrative epigenomic-transcriptomic analyses

Shumin, S.; Xiaolei, L.; Guanyu, J.; Xuelin, W.; Junwen, W.; Xue, B.; Jing, X.; Jianda, P.; Yining, S.; Xinrui, W.; Fei, G.; Mingyuan, L.

10.1101/353417 — genetics — Posted on 2018-06-21

718 Pan-cancer systematic identification of lncRNAs associated with cancer prognosis

Ung, M.; Schaafsma, E.; Mattox, D.; Wang, G.; Cheng, C.

10.1101/353334 — cancer biology — Posted on 2018-06-21

719 Hair Follicle Epidermal Stem Cells Define a Niche for Tactile Sensation

Fujiwara, H.; Cheng, C.-C.; Tsutsui, K.; Taguchi, T.; Sanzen, N.; Kakiguchi, K.; Yonemura, S.; Tanegashima, C.; Keeley, S. D.; Watt, F. M.; Kiyonari, H.; Furuta, Y.; Nakagawa, A.; Tomono, Y.

10.1101/353490 — developmental biology — Posted on 2018-06-21

720 Fbxo2VHC mouse and embryonic stem cell reporter lines delineate in vitro-generated inner ear sensory epithelia cells and enable otic lineage selection and Cre-recombination

Hartman, B. H.; Böscke, R.; Ellwanger, D. C.; Keymeulen, S.; Scheibinger, M.; Heller, S.

10.1101/352716 — developmental biology — Posted on 2018-06-21

721 Inter- and intra-specific genomic divergence in Drosophila montana shows evidence for cold adaptation

Parker, D. J.; Wiberg, R. A. W.; Trivedi, U.; Tyukmaeva, V. I.; Gharbi, K.; Butlin, R. K.; Hoikkala, A.; Kankare, M.; Ritchie, M. G.

10.1101/282582 — genomics — Posted on 2018-06-21

722 Profiling of pluripotency factors in individual stem cells and early embryos

Hainer, S. J.; Boskovic, A.; Rando, O. J.; Fazzio, T. G.

10.1101/286351 — genomics — Posted on 2018-06-21

723 Cerebellar nuclei neurons dictate growth of the cortex through developmental scaling of presynaptic Purkinje cells

Willett, R. T.; Wojcinski, A.; Bayin, N. S.; Lao, Z.; Stephen, D.; Dauber-Decker, K. L.; Wu, Z.; Tessier-Lavigne, M.; Saito, H.; Suzuki, N.; Joyner, A. L.

10.1101/310953 — developmental biology — Posted on 2018-06-21

724 The tempo of linked selection: Rapid emergence of a heterogeneous genomic landscape during a radiation of monkeyflowers

Stankowski, S.; Chase, M. A.; Fuiten, A. M.; Ralph, P. L.; Streisfeld, M. A.

10.1101/342352 — evolutionary biology — Posted on 2018-06-21

725 Cell Cycle, Energy Metabolism and DNA Repair Pathways in Cancer Cells are Suppressed by Compound Kushen Injection.

Cui, J.; Qu, Z.; Harata-Lee, Y.; Aung, T. N.; Shen, H.; Wang, W.; Adelson, D. L.

10.1101/348102 — cancer biology — Posted on 2018-06-21

726 Restoring ancestral microbiome aids beetle adaptation to new diets

Agarwal, A.; Agashe, D.

10.1101/352989 — evolutionary biology — Posted on 2018-06-21

727 Capturing variation impact on molecular interactions: the IMEx Consortium mutations data set

10.1101/346833 — bioinformatics — Posted on 2018-06-21

728 Structural evolutionary analysis predicts functional sites in the artemisinin resistance malaria protein K13

Coppee, R.; Jeffares, D.; Sabbagh, A.; Clain, J.

10.1101/346668 — evolutionary biology — Posted on 2018-06-21

729 Hyperparameter-free optimizer of gradient-descent method incorporating unit correction and moment estimation

Yamada, K. D.

10.1101/348557 — bioinformatics — Posted on 2018-06-21

730 Holistic optimization of an RNA-seq workflow for multi-threaded environments

Hung, L.-H.; Lloyd, W.; Sridhar, R. A.; Ravishankar, S. D. A.; Xiong, Y.; Sobie, E.; Yeung, K. Y.

10.1101/345819 — bioinformatics — Posted on 2018-06-21

731 A signature of cognitive deficits and brain atrophy that is highly predictive of progression to Alzheimer’s dementia

Tam, A.; Dansereau, C.; Iturria-Medina, Y.; Urchs, S.; Orban, P.; Breitner, J.; Bellec, P.; Alzheimer's Disease Neuroimaging Initiative,

10.1101/352344 — neuroscience — Posted on 2018-06-21

732 Developing a network view of type 2 diabetes risk pathways through integration of genetic, genomic and functional data

Fernandez-Tajes, J.; Gaulton, K. J.; van de Bunt, M.; Torres, J.; Turner, M.; Mahajan, A.; Gloyn, A. L.; Lage, K.; McCarthy, M. I.

10.1101/350181 — bioinformatics — Posted on 2018-06-21

733 Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite

Lieven, C.; Beber, M. E.; Olivier, B. G.; Bergmann, F. T.; Babaei, P.; Bartell, J. A.; Blank, L. M.; Chauhan, S.; Correia, K.; Diener, C.; Dräger, A.; Ebert, B. E.; Edirisinghe, J. N.; Fleming, R. M. T.; Garcia-Jimenez, B.; van Helvoirt, W.; Henry, C.; Hermjakob, H.; Herrgard, M. J.; Kim, H. U.; King, Z.; Koehorst, J. J.; Klamt, S.; Klipp, E.; Lakshmanan, M.; Le Novere, N.; Lee, D.-Y.; Lee, S. Y.; Lee, S.; Lewis, N. E.; Ma, H.; Machado, D.; Mahadevan, R.; Maia, P.; Mardinoglu, A.; Medlock, G. L.; Monk, J.; Nielsen, J.; Nielsen, L. K.; Nogales, J.; Nookaew, I.; Resendis, O.; Palsson, B.

10.1101/350991 — systems biology — Posted on 2018-06-21

734 Logical design of oral glucose ingestion pattern minimizing blood glucose in humans

Fujii, M.; Murakami, Y.; Karasawa, Y.; Sumitomo, Y.; Fujita, S.; Koyama, M.; Uda, S.; Kubota, H.; Inoue, H.; Konishi, K.; Oba, S.; Ishii, S.; Kuroda, S.

10.1101/352955 — systems biology — Posted on 2018-06-21

735 Inter-trial effects in visual pop-out search: Factorial comparison of Bayesian updating models

Allenmark, F.; Müller, H. J.; Shi, Z.

10.1101/353003 — neuroscience — Posted on 2018-06-21

736 Three-dimensional refractive index distributions of individual angiosperm pollen grains

Park, C.; Lee, S.; Kim, G.; Lee, S.; Lee, J.; Heo, T.; Park, Y.; Park, Y.

10.1101/353243 — plant biology — Posted on 2018-06-21

737 Antibody responses to the Zika virus polyprotein in pregnant and non-pregnant macaques

Mohr, E.; Heffron, A. S.; Baker, D.; Haj, A. K.; Buechler, C. R.; Bailey, A.; Dudley, D.; Newman, C. M.; Mohns, M. S.; Koenig, M.; Breitbach, M. E.; Rasheed, M.; Stewart, L. M.; Eickhoff, J. C.; Pinapati, R. S.; Beckman, E.; Li, H.; Patel, J. J.; Tan, J. C.; O'Connor, D. H.

10.1101/352880 — microbiology — Posted on 2018-06-21

738 Disturbance During Biofilm Community Succession Promotes Cooperation and Diversity

Avignone Rossa, C.; Stratford, J.; Hodgson, D. M.; Beecroft, N. J.; Smith, A.; Marchesi, J. R.

10.1101/352914 — ecology — Posted on 2018-06-21

739 Tissue- and cellular-level allocation of autotrophic and heterotrophic nutrients in the coral symbiosis -- A NanoSIMS study

Krueger, T.; Bodin, J.; Horwitz, N.; Loussert-Fonta, C.; Sakr, A.; Escrig, S.; Fine, M.; Meibom, A.

10.1101/353250 — physiology — Posted on 2018-06-21

740 Neural Mechanisms Associated with Semantic and Basic Self-Oriented Memory Processes Interact to Modulate Self-Esteem.

Amey, R.; Leitner, J.; Liu, M.; Forbes, C.

10.1101/350926 — neuroscience — Posted on 2018-06-21

741 Infectious bronchitis virus attaches to lipid rafts and enters cells via clathrin mediated endocytosis

Wang, H.; Sun, Y.; Mao, X.; Meng, C.; Tan, L.; Song, C.; Qiu, X.; Ding, C.; Liao, Y.

10.1101/352898 — microbiology — Posted on 2018-06-21

742 Genomic variants among threatened Acropora corals

Ktichen, S.; Ratan, A.; Bedoya-Reina, O.; Burhans, R.; Fogarty, N.; Miller, W.; Baums, I.

10.1101/349910 — genomics — Posted on 2018-06-21

743 Whole Proteome Clustering of 2,307 Genomes Reveals Remarkable Conservation of Four Proteins Among Proteobacteria While Revealing Significant Annotation Issues

Lockwood, S.; Brayton, K. A.; Daily, J. A.; Broschat, S. L.

10.1101/352856 — genomics — Posted on 2018-06-21

744 Selective sweeps in populations of the broad host range plant pathogenic fungus Sclerotinia sclerotiorum

Derbyshire, M.; Denton-Giles, M.; Hane, J. K.; Chang, S.; Mousavi-Derazmahalleh, M.; Raffaele, S.; Buchwaldt, L.; Kamphuis, L. G.

10.1101/352930 — genetics — Posted on 2018-06-21

745 Restoring ancestral microbiome aids beetle adaptation to new diets

Agarwal, A.; Agashe, D.

10.1101/352989 — evolutionary biology — Posted on 2018-06-21

746 TGF-βRII knock-down promotes tumor growth and chemoresistance to gemcitabine of pancreatic cancer cells via phosphorylation of STAT3

Drubay, V.; Skrypek, N.; Cordiez, L.; Vasseur, R.; Schulz, C.; Boukrout, N.; Duchene, B.; Coppin, L.; Van Seuningen, I.; Jonckheere, N.

10.1101/352963 — cancer biology — Posted on 2018-06-21

747 High resolution profile of body wide pathological changes induced by abnormal elastin metabolism in Loxl1 knockout mice

Wu, B.; Li, Y.; An, C.; Jiang, D.; Gong, L.; Liu, Y.; Liu, Y.; Li, J.; Ouyang, H.; Zou, X.

10.1101/353169 — cancer biology — Posted on 2018-06-21

748 ComPath: An ecosystem for exploring, analyzing, and curating pathway databases

Domingo-Fernandez, D.; Hoyt, C. T.; Bobis Alvarez, C.; Marin-Llao, J.; Hofmann-Apitius, M.

10.1101/353235 — bioinformatics — Posted on 2018-06-21

749 Mediator is essential for small nuclear and nucleolar RNA transcription in yeast

Tourigny, J. P.; Saleh, M. M.; Zentner, G. E.

10.1101/352906 — molecular biology — Posted on 2018-06-21

750 Yeast Ded1 promotes 48S translation pre-initiation complex assembly in an mRNA-specific and eIF4F-dependent manner

Gupta, N.; Lorsch, J. R.; Hinnebusch, A. G.

10.1101/353078 — biochemistry — Posted on 2018-06-21

751 A MULTI-PURPOSE WORM TRACKER BASED ON FIM

Kiel, M.; Berh, D.; Daniel, J.; Otto, N.; ter Steege, A.; Jiang, X.; Liebau, E.; Risse, B.

10.1101/352948 — animal behavior and cognition — Posted on 2018-06-21

752 Ecological Network assembly: how the regional meta web influence local food webs

Saravia, L. A.; Marina, T. I.; De Troch, M.; Momo, F. R.

10.1101/340430 — ecology — Posted on 2018-06-21

753 Nucleoporin 133 deficiency leads to glomerular damage in zebrafish

Cianciolo Cosentino, C.; Berto, A.; Hari, M.; Loffing, J.; Neuhauss, S. C. F.; Doye, V.

10.1101/352971 — developmental biology — Posted on 2018-06-21

754 Functional recruitment of dynamin requires multimeric interactions for efficient endocytosis

Rosendale, M.; Van, T. N.; Grillo-Bosch, D.; Gauthereau, I.; Claverol, S.; Choquet, D.; Sainlos, M.; Perrais, D.

10.1101/309245 — cell biology — Posted on 2018-06-21

755 Multiparametric Signature of Glioblastoma Differentiation Revealed by Imaging of Cellular Epigenetic Landscapes

Farhy, C.; Hariharan, S.; Ylanko, J.; van Woudenberg, L.; Cimadamore, F.; Ugarte, F.; Forsberg, C.; Huang, C.-T.; Andrews, D.; Terskikh, A.

10.1101/348888 — cancer biology — Posted on 2018-06-21

756 Visual recency bias is explained by a mixture model of internal representations

Kalm, K.; Norris, D.

10.1101/228973 — animal behavior and cognition — Posted on 2018-06-21

757 Adaptive stimulus selection for multi-alternative psychometric functions with lapses

Bak, J. H.; Pillow, J. W.

10.1101/260976 — animal behavior and cognition — Posted on 2018-06-21

758 QTL Analysis of Domestication Syndrome in Zombi Pea (Vigna vexillata), an Underutilized Legume Crop

Dachapak, S.; Tomooka, N.; Somta, P.; Naito, K.; Kaga, A.; Srinives, P.

10.1101/353029 — genomics — Posted on 2018-06-21

759 Marine cyanolichens from different littoral zones are associated with distinct bacterial communities

West, N. J.; Parrot, D.; Fayet, C.; Grube, M.; Tomasi, S.; Suzuki, M. T.

10.1101/209320 — ecology — Posted on 2018-06-21

760 Convergent evolution as an indicator for selection during acute HIV-1 infection

Bertels, F.; Metzner, K. J.; Regoes, R. R.

10.1101/168260 — evolutionary biology — Posted on 2018-06-21

761 Nanomechanical Analysis of Extracellular Matrix and Cells in Multicellular Spheroids.

Vyas, V.; Solomon, M.; D'Souza, G. G. M.; Huey, B. D.

10.1101/193516 — bioengineering — Posted on 2018-06-21

762 In silico modeling and simulation of neuroendocrine-immune modulation through adrenergic and 17β-estradiol receptors in lymphocytes show differential activation of cyclic adenosine monophosphate (cAMP)

Priyanka, H.; Thiyagaraj, A.; Krithika, G.; Hima, L.; Hopper, W.; ThyagaRajan, S.

10.1101/353185 — systems biology — Posted on 2018-06-21

763 β-lactam Antibiotics Stimulate the Pathogenicity of Methicillin-resistant Staphylococcus aureus Via SarA-controlled Tandem Lipoprotein Expression

Shang, W.; Rao, Y.; Zheng, Y.; Yang, Y.; Hu, Q.; Hu, Z.; Yuan, J.; Peng, H.; Xiong, K.; Tan, L.; Li, S.; Zhu, J.; Li, M.; Hu, X.; Mao, X.; Rao, X.

10.1101/353227 — pathology — Posted on 2018-06-21

764 Nitrogen regulator GlnR directly controls transcription of prpDBC operon involved in methylcitrate cycle in Mycobacterium smegmatis

Liu, X.-X.; Liu, W.; Shen, M.-J.; Ye, B.-C.

10.1101/353219 — microbiology — Posted on 2018-06-21

765 Ensemble Feature Selection and Meta-Analysis of Cancer miRNA Biomarkers

Lopez-Rincon, A.; Martinez-Archundia, M.; Martinez-Ruiz, G. U.; Tonda, A.

10.1101/353201 — bioinformatics — Posted on 2018-06-21

766 Detection of epistatic interactions with Random Forest

Schmalohr, C.; Grossbach, J.; Clement-Ziza, M.; Beyer, A.

10.1101/353193 — bioinformatics — Posted on 2018-06-21

767 Wolbachia-infected Drosophila prefer cooler temperatures

Arnold, P. A.; Levin, S.; Stevanovic, A. L.; Johnson, K.

10.1101/352872 — pathology — Posted on 2018-06-21

768 Phase of neuronal activity encodes 2-dimensional space in the human entorhinal cortex

Nadasdy, Z.; Torok, A.; Nguyen, T. P.; Shen, J. Y.; Brigg, D. E.; Modur, P. N.; Buchanan, R. J.

10.1101/352815 — neuroscience — Posted on 2018-06-21

769 Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307

Wyres, K. L.; Hawkey, J.; Hetland, M. A. K.; Fostervold, A.; Wick, R. R.; Judd, L. M.; Hamidian, M.; Howden, B. P.; Lohr, I. H.; Holt, K. E.

10.1101/352740 — microbiology — Posted on 2018-06-21

770 Recent secondary contacts, background selection and variable recombination rates shape genomic diversity in the model species Anolis carolinensis

Bourgeois, Y.; Ruggiero, R.; Manthey, J.; Boissinot, S.

10.1101/352922 — evolutionary biology — Posted on 2018-06-21

771 A data-driven approach to characterising intron signal in RNA-seq data

Zhang, A. Y.; Su, S.; Ng, A. P.; Holik, A. Z.; Asselin-Labat, M.-L.; Ritchie, M. E.; Law, C. W.

10.1101/352823 — bioinformatics — Posted on 2018-06-21

772 A Novel AuNPs-based Glucose Oxidase Mimic with Enhanced Activity and Selectivity Constructed by Molecular Imprinting and O2-Containing Nanoemulsion Embedding

Fan, L.; Wu, H.; Lou, D.; Zhang, X.; Zhu, Y.; Gu, N.; Zhang, Y.

10.1101/352849 — biochemistry — Posted on 2018-06-21

773 Endo-lysosomal sorting and degradation of Tau mediates glucocorticoid-driven hippocampalmalfunction

Vaz-Silva, J.; Zhu, M.; Jin, Q.; Zhuravleva, V.; Gomes, P.; Quintremil, S.; Meira, T.; Silva, J.; Dioli, C.; Soares-Cunha, C.; Daskalakis, N.; Sousa, N.; Sotiropoulos, I.; Waites, C. L.

10.1101/352724 — neuroscience — Posted on 2018-06-21

774 Brain Connectivity Tracks Effects of Chemotherapy Separately from Behavioral Measures

Kardan, O.; Reuter-Lorenz, P. A.; Peltier, S.; Churchill, N. W.; Jung, M.; Misic, B.; Askren, M. K.; Cimprich, B.; Berman, M. G.

10.1101/352690 — neuroscience — Posted on 2018-06-21

775 Full life-cycle models from ring-recovery data: estimating fecundity from age ratios at capture

Arnold, T. W.

10.1101/352658 — ecology — Posted on 2018-06-21

776 Epitope - based peptide vaccine against Fructose-bisphosphate aldolase (FBA) of Madurella mycetomatis using immunoinformatics approaches

Mohammed, A. A.; ALnaby, A. M. H.; Sabeel, S. M.; AbdElmarouf, F. M.; Dirar, A. I.; Ali, M. M.; Khandgawi, M. A.; Yousif, A. M.; Abdulgadir, E. M.; Sabahalkhair, M. A.; Abbas, A. E.; Hassan, M. A.

10.1101/352625 — bioinformatics — Posted on 2018-06-21

777 CRISPR delivery particles for developing therapeutic strategies in metabolic disease

Shen, Y.; Cohen, J. L.; Nicoloro, S. M.; Kelly, M.; Yenilmez, B.; Henriques, F.; Tsagkaraki, E.; Edwards, Y. J. K.; Hu, X.; Friedline, R. H.; Kim, J. K.; Czech, M. P.

10.1101/352799 — bioengineering — Posted on 2018-06-21

778 Correspondence: fMRI replicability depends upon sufficient individual-level data

Nee, D. E.

10.1101/352633 — neuroscience — Posted on 2018-06-21

779 Spatial distribution of benthic macrofauna in the Central Arctic Ocean

Vedenin, A.; Gusky, M.; Gebruk, A.; Kremenetskaia, A.; Rybakova, E.; Boetius, A.

10.1101/353060 — ecology — Posted on 2018-06-21

780 Options for calibrating CERES-maize genotype specific parameters under data-scarce environments

Aminu Adnan, A.; Diels, J.; Jibrin, J. M.; Kamara, A. Y.; Craufurd, P.; Mohammed, I. B.; Tonnang, H. Z. E.

10.1101/353045 — scientific communication and education — Posted on 2018-06-21

781 β-Blocker inhibits myocardial infarction-induced brown adipose tissue D2 activation and maintains a low thyroid hormone state in rats.

Seara, F. A. C.; Araujo, I. G.; Imperio, G. E.; Marassi, M. P.; Silva, A. C. M.; Mecawi, A. S.; Reis, L. C.; Olivares, E. L.

10.1101/353052 — physiology — Posted on 2018-06-21

782 Viral etiology of Acute Respiratory Infections in Hospitalized Children in Novosibirsk City, Russia (2013 - 2017)

Kurskaya, O.; Ryabichenko, T.; Leonova, N.; Shi, W.; Bi, H.; Sharshov, K.; Kazachkova, E.; Sobolev, I.; Prokopyeva, E.; Kartseva, T.; Alekseev, A.; Shestopalov, A.

10.1101/353037 — microbiology — Posted on 2018-06-21

783 Functional properties of CD8+ T cells under lymphopenic conditions

Silaeva, Y.; Kalinina, A.; Khromykh, L.; Kazansky, D.

10.1101/353011 — immunology — Posted on 2018-06-21

784 Integration of phased Hi-C and molecular phenotype data to study genetic and epigenetic effects on chromatin looping

Greenwald, W. W.; Li, H.; Benaglio, P.; Jakubosky, D.; Matsui, H.; Schmitt, A.; Selvaraj, S.; D'Antonio, M.; D'Antonio-Chrownowska, A.; Smith, E. N.; Frazer, K. A.

10.1101/352682 — genomics — Posted on 2018-06-20

785 Effects of Pathological Mutations on the Prion-Like Polymerisation of MyD88

O'Carroll, A.; Chauvin, B.; Brown, J.; Meagher, A.; Coyle, J.; Hunter, D.; Bhumkar, A.; Kobe, B.; Ve, T.; Sierecki, E.; Gambin, Y.

10.1101/351726 — molecular biology — Posted on 2018-06-20

786 SmartCodes : functionalized barcodes that enable targeted retrieval of clonal lineages from a heterogeneous population

Rebbeck, C.; Raths, F.; Ben Cheikh, B.; Gouin, K.; Hannon, G.; Knott, S.

10.1101/352617 — molecular biology — Posted on 2018-06-20

787 Liquid biopsy for infectious diseases: Sequencing of cell-free plasma to detect pathogen DNA in patients with invasive fungal disease

Hong, D. K.; Blauwkamp, T. A.; Kertesz, M.; Bercovici, S.; Truong, C.; Banaei, N.

10.1101/352641 — microbiology — Posted on 2018-06-20

788 Evolution of correlated complexity in the radically different courtship signals of birds-of-paradise

Ligon, R. A.; Diaz, C. D.; Morano, J. L.; Troscianko, J.; Stevens, M.; Moskeland, A.; Laman, T. G.; Scholes, E.

10.1101/351437 — evolutionary biology — Posted on 2018-06-20

789 Developing a network view of type 2 diabetes risk pathways through integration of genetic, genomic and functional data

Fernandez-Tajes, J.; Gaulton, K. J.; van de Bunt, M.; Torres, J.; Mahajan, A.; Mahajan, A.; Gloyn, A. L.; Lage, K.; McCarthy, M. I.

10.1101/350181 — bioinformatics — Posted on 2018-06-20

790 Communication and quorum sensing in non-living mimics of eukaryotic cells

Niederholtmeyer, H.; Chaggan, C.; Devaraj, N. K.

10.1101/352666 — synthetic biology — Posted on 2018-06-20

791 Multiobjective Strain Design: A Framework for Modular Cell Engineering

Garcia, S.; Trinh, C. T.

10.1101/349399 — bioengineering — Posted on 2018-06-20

792 Low functional but large soil-related variations in growth trajectories characterise the widespread Neotropical tree Cecropia obtusa Trecul (Urticaceae)

Levionnois, S.; Tysklind, N.; Nicolini, E.; Ferry, B.; Troispoux, V.; Le Moguedec, G.; Morel, H.; Stahl, C.; Coste, S.; Caron, H.; Heuret, P.

10.1101/351197 — ecology — Posted on 2018-06-20

793 Allele-specific NKX2-5 binding underlies multiple genetic associations with human EKG traits

Benaglio, P.; D'Antonio-Chronowska, A.; Greenwald, W. W.; DeBoever, C.; Li, H.; Drees, F.; Singhal, S.; Matsui, H.; D'Antonio, M.; Smith, E. N.; Frazer, K. A.

10.1101/351411 — genetics — Posted on 2018-06-20

794 Kif17 phosphorylation regulates its ciliary localization and photoreceptor outer segment turnover

Lewis, T. R.; Kundinger, S. R.; Link, B. A.; Insinna, C.; Besharse, J. C.

10.1101/351122 — cell biology — Posted on 2018-06-20

795 The sequences near Chi sites allow the RecBCD pathway to avoid genomic rearrangements

Prentiss, M. G.; Godoy, V.; Danilowicz, C.; Prevost, C.; Tashjian, T.; Li, C.

10.1101/351395 — biophysics — Posted on 2018-06-20

796 Bilateral asymmetry favours the left hemimandibular side in companion rabbits

Pares-Casanova, P. M.; Cabello, M.; Gambo, B. G.; Samuel, M. O.; Olopade, J. O.

10.1101/351320 — pathology — Posted on 2018-06-20

797 A fast and cost-effective microsampling protocol incorporating reduced animal usage for time-series transcriptomics in rodent malaria parasites

Ramaprasad, A.; Subudhi, A. K.; Culleton, R.; Pain, A.

10.1101/350546 — microbiology — Posted on 2018-06-20

798 Epigenetic analysis identifies factors driving racial disparity in prostate cancer

Rai, R.; Yadav, S. S.; Pan, H.; O'Connor, J.; Alshalalfa, M.; Davicioni, E.; Taioli, E.; Elemento, O.; Tewari, A. K.; Yadav, K. K.

10.1101/352138 — cancer biology — Posted on 2018-06-20

799 Statistical loadings and latent significance simplify and improve interpretation of multivariate projection models

Jonsson, P.; Bjorkblom, B.; Chorell, E.; Olsson, T.; Antti, H.

10.1101/350975 — bioinformatics — Posted on 2018-06-20

800 Analyses of cancer data in the Genomic Data Commons Data Portal with new functionalities in the TCGAbiolinks R/Bioconductor package

Mounir, M.; Silva, T. C.; Lucchetta, M.; Olsen, C.; Bontempi, G.; Noushmehr, H.; Colaprico, A.; Papaleo, E.

10.1101/350439 — bioinformatics — Posted on 2018-06-20

801 Validation and automation of a high-throughput multi-targeted method for semi-quantification of endogenous metabolites from different biological matrices using tandem mass spectrometry

Nandania, J.; Peddinti, G.; Pessia, A.; Kokkonen, M.; Velagapudi, V.

10.1101/352468 — biochemistry — Posted on 2018-06-20

802 Habitual stone-tool aided extractive foraging in white-faced capuchins, Cebus capucinus

Barrett, B. J.; Monteza-Moreno, C. M.; Dogandzic, T.; Zwyns, N.; Ibanez, A.; Crofoot, M. C.

10.1101/351619 — animal behavior and cognition — Posted on 2018-06-20

803 Genome-scale reconstructions of the mammalian secretory pathway predict metabolic costs and limitations of protein secretion

Gutierrez, J. M.; Feizi, A.; Li, S.; Kallehauge, T. B.; Hefzi, H.; Grav, L. M.; Ley, D.; Hizal, D. B.; Betenbaugh, M. J.; Voldborg, B.; Kildegaard, H. F.; Lee, G. M.; Palsson, B. O.; Nielsen, J.; Lewis, N.

10.1101/351387 — systems biology — Posted on 2018-06-20

804 Linear stability analysis of morphodynamics during tissue regeneration in plants

Reijne, A.-M.; Pruessner, G.; Sena, G.

10.1101/350884 — systems biology — Posted on 2018-06-20

805 Ancestry of the two subgenomes of maize

McKain, M. R.; Estep, M. C.; Pasquet, R.; Layton, D. J.; Vela Diaz, D. M.; Zhong, J.; Hodge, J. G.; Malcomber, S. T.; Chipabika, G.; Pallangyo, B.; Kellogg, E. A.

10.1101/352351 — plant biology — Posted on 2018-06-20

806 What do ossification sequences tell us about the origin of extant amphibians?

Laurin, M.; Marjanovic, D.; Lapauze, O.

10.1101/352609 — paleontology — Posted on 2018-06-20

807 On the relationship between the rate of learning and retrieval-induced forgetting

Markoja, A.; Szollosi, A.; Racsmany, M.

10.1101/350959 — neuroscience — Posted on 2018-06-20

808 Coordinated electrical activity in the olfactory bulb gates the oscillatory entrainment of entorhinal networks in neonatal mice

Gretenkord, S.; Kostka, J. K.; Hartung, H.; Watznauer, K.; Fleck, D.; Minier-Toribio, A.; Spehr, M.; Hanganu-Opatz, I. L.

10.1101/352054 — neuroscience — Posted on 2018-06-20

809 Retrospective cues mitigate information loss in human cortex during working memory storage.

Ester, E.; Nouri, A.; Rodriguez, L.

10.1101/351544 — neuroscience — Posted on 2018-06-20

810 Rod signaling in primate retina: range, routing and kinetics

Grimes, W. N.; Baudin, J.; Azevedo, A.; Rieke, F.

10.1101/352419 — neuroscience — Posted on 2018-06-20

811 Xist lncRNA forms silencing granules that induce heterochromatin formation and repressive complexes recruitment by phase separation

Cerase, A.; Armaos, A.; Cid-Samper, F.; Avner, P.; Tartaglia, G. G.

10.1101/351015 — molecular biology — Posted on 2018-06-20

812 Defining Inflammatory Cell States in Rheumatoid Arthritis Joint Synovial Tissues by Integrating Single-cell Transcriptomics and Mass Cytometry

Zhang, F.; Wei, K.; Slowikowski, K.; Fonseka, C. Y.; Rao, D. A.; Kelly, S.; Goodman, S. M.; Tabechian, D.; Hughes, L. B.; Salomon-Escoto, K.; Watts, G. F. M.; Apruzzese, W.; Lieb, D. J.; Boyle, D. L.; Mandelin, A. M.; Accelerating Medicines Partnership: RA Phase 1, ; AMP RA/SLE, ; Boyce, B. F.; DiCarlo, E.; Gravallese, E. M.; Gregersen, P. K.; Moreland, L.; Firestein, G. S.; Hacohen, N.; Nusbaum, C.; Lederer, J. A.; Perlman, H.; Pitzalis, C.; Filer, A.; Holers, V. M.; Bykerk, V. P.; Donlin, L. T.; Anolik, J. H.; Brenner, M. B.; Raychaudhuri, S.

10.1101/351130 — immunology — Posted on 2018-06-20

813 Reannotation of eight Drosophila genomes

Yang, H.; Jaime, M.; Polihronakis, M.; Kanegawa, K.; Markow, T.; Kaneshiro, K.; Oliver, B.

10.1101/350363 — genomics — Posted on 2018-06-20

814 Coping-Style Behaviour Identified by a Survey of Parent-of-Origin Effects in the Rat

Mont, C.; Hernandez Piliego, P.; Canete, T.; Oliveras, I.; Rio-Alamos, C.; Blazquez, G.; Lopez-Aumatell, R.; Martinez-Membrives, E.; Tobena, A.; Flint, J.; Fernandez Teruel, A.; Mott, R.

10.1101/351155 — genetics — Posted on 2018-06-20

815 BFA1 has multiple positive roles in directing late mitotic events in S. cerevisiae

Seshan, A.; Whalen, J.; Sniffen, C.; Gartland, S.; Vannini, M.

10.1101/352427 — genetics — Posted on 2018-06-20

816 Subfamily-specific functionalization of diversified immune receptors in wild barley

Maekawa, T.; Kracher, B.; Saur, I. M. L.; Yoshikawa-Maekawa, M.; Kellner, R.; Pankin, A.; von Korff, M.; Schulze-Lefert, P.

10.1101/352278 — evolutionary biology — Posted on 2018-06-20

817 Potential impacts of transport infrastructure and traffic on bird conservation in Swedish Special Protection Areas

Helldin, J. O.

10.1101/351692 — ecology — Posted on 2018-06-20

818 Using deep learning for bamboo forest detection from Google Earth images.

Watanabe, S.; Sumi, K.; Ise, T.

10.1101/351643 — ecology — Posted on 2018-06-20

819 Three-dimensional organization of transzonal projections and other cytoplasmic extensions in mouse ovarian follicles

Baena, V.; Terasaki, M.

10.1101/351262 — cell biology — Posted on 2018-06-20

820 Electrical-charge accumulation enables integrative quality control during B. subtilis sporulation

Sirec, T.; Buffard, P.; Garcia-Ojalvo, J.; Asally, M.

10.1101/349654 — biophysics — Posted on 2018-06-20

821 Inferring Reaction Networks using Perturbation Data

Choi, K.; Hellerstein, J.; Wiley, S.; Sauro, H. M.

10.1101/351767 — systems biology — Posted on 2018-06-20

822 Streamlined, recombinase-free genome editing with CRISPR-Cas9 in Lactobacillus plantarum reveals barriers to efficient editing

Leenay, R. T.; Vento, J. M.; Shah, M.; Martino, M. E.; Leulier, F.; Beisel, C. L.

10.1101/352039 — synthetic biology — Posted on 2018-06-20

823 The genome and metabolome of the tobacco tree, Nicotiana glauca: a potential renewable feedstock for the bioeconomy

Usadel, B.; Tohge, T.; Scossa, F.; Sierro, N.; Schmidt, M.; Vogel, A.; Bolger, A.; Kozlo, A.; Enfissi, E. M.; Morreel, K.; Regenauer, M.; Hallab, A.; Ruprecht, C.; Gundlach, H.; Spannagl, M.; Koram, Y.; Mayer, K. F.; Boerjan, W.; Fraser, P. D.; Persson, S.; Ivanov, N. V.; Fernie, A. R.

10.1101/351429 — plant biology — Posted on 2018-06-20

824 Drug Interactions Between Dolutegravir and Artemether-Lumefantrine or Artesunate-Amodiaquine

Walimbwa, S.; Lamorde, M.; Waitt, C.; Kaboggoza, J.; Else, L.; Byakika-Kibwika, P.; Amara, A.; Gini, J.; Winterberg, M.; Chiong, J.; Tarning, J.; Khoo, S. H.

10.1101/351684 — pharmacology and toxicology — Posted on 2018-06-20

825 Investigating speech and language impairments in delirium: a preliminary case-control study

Green, S.; Reivonen, S.; Rutter, L.-M.; Nouzova, E.; Duncan, N.; Clarke, C.; MacLullich, A. M. J.; Tieges, Z.

10.1101/351007 — neuroscience — Posted on 2018-06-20

826 Pins & Needles: Towards Limb Disownership in Augmented Reality

Kannape, O. A.; Smith, E. J.; Moseley, P.; Roy, M.; Lenggenhager, B.

10.1101/349795 — neuroscience — Posted on 2018-06-20

827 Ultralarge Modulation of Single Wall Carbon Nanotube Fluorescence Mediated by Neuromodulators Adsorbed on Arrays of Oligonucleotide Rings

Beyene, A. G.; Alizadehmojarad, A. A.; Dorlhiac, G.; Streets, A. M.; Kral, P.; Vukovic, L.; Landry, M. P.

10.1101/351627 — neuroscience — Posted on 2018-06-20

828 A framework for offline evaluation and optimization of real-time algorithms for use in neurofeedback, demonstrated on an instantaneous proxy for correlations

Ramot, M.; Gonzalez-Castillo, J.

10.1101/351072 — neuroscience — Posted on 2018-06-20

829 Population dynamics and transcriptomic responses of Pseudomonas aeruginosa in a complex laboratory microbial community

Cheng, Y.; Yam, J. K. H.; Cai, Z.; Ding, Y.; Zhang, L.; Deng, Y.; Yang, L.

10.1101/351668 — microbiology — Posted on 2018-06-20

830 Th17/regulatory T cells balance is predictive of Coccidioides infection outcome in pediatric patients

Davini, D.; Naeem, F.; Phong, A.; Al-Kuhlani, M.; Valentine, K. M.; McCarty, J.; Ojcius, D. M.; Gravano, D. M.; Hoyer, K. K.

10.1101/347898 — immunology — Posted on 2018-06-20

831 Inflammation induced by influenza virus impairs innate control of human pneumococcal carriage

Jochems, S. P.; Marcon, F.; Carniel, B. F.; Holloway, M.; Mitsi, E.; Smith, E.; Gritzfeld, J. F.; Solorzano, C.; Reine, J.; Pojar, S.; Nikolaou, E.; German, E. L.; Hyder-Wright, A.; Hill, H.; Hales, C.; de Steenhuijsen Piters, W. A. A.; Bogaert, D.; Adler, H.; Zaidi, S.; Connor, V.; Rylance, J.; Nakaya, H. I.; Ferreira, D. M.

10.1101/347161 — immunology — Posted on 2018-06-20

832 An Equivariant Bayesian Convolutional Network predicts recombination hotspots and accurately resolves binding motifs

Lunter, G.; Brown, R.

10.1101/351254 — genomics — Posted on 2018-06-20

833 OpenPathSampling: A Python framework for path sampling simulations. II. Building and customizing path ensembles and sample schemes

Swenson, D. W. H.; Prinz, J.-H.; Noe, F.; Chodera, J.; Bolhuis, P. G.

10.1101/351510 — biophysics — Posted on 2018-06-20

834 DeepAffinity: Interpretable Deep Learning of Compound Protein Affinity through Unified Recurrent and Convolutional Neural Networks

Karimi, M.; Wu, D.; Wang, Z.; Shen, Y.

10.1101/351601 — bioinformatics — Posted on 2018-06-20

835 Development of an interactive open source software application (RadaR) for infection management / antimicrobial stewardship

Luz, C. F.; Berends, M. S.; Dik, J.-W. H.; Lokate, M.; Pulcini, C.; Glasner, C.; Sinha, B.

10.1101/347534 — bioinformatics — Posted on 2018-06-20

836 Growth adaptation of gnd and sdhCB Escherichia coli deletion strains diverges from a similar initial perturbation of the transcriptome

McCloskey, D.; Xu, S.; Sandberg, T. E.; Brunk, E.; Hefner, Y.; Szubin, R.; Feist, A. M.; Palsson, B. O.

10.1101/342683 — systems biology — Posted on 2018-06-20

837 An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics

Angelidis, I.; Simon, L. M.; Fernandez, I. E.; Strunz, M.; Mayr, C. H.; Greiffo, F. R.; Tsitsiridis, G.; Graf, E.; Strom, T. M.; Eickelberg, O.; Mann, M.; Theis, F. J.; Schiller, H. B.

10.1101/351353 — systems biology — Posted on 2018-06-20

838 Multiple optimal phenotypes overcome redox and glycolytic intermediate metabolite imbalances in Escherichia coli pgi knockout evolutions

McCloskey, D.; Xu, S.; Sandberg, T. E.; Brunk, E.; Hefner, Y.; Szubin, R.; Feist, A. M.; Palsson, B. O.

10.1101/342709 — systems biology — Posted on 2018-06-20

839 Increased temperatures may safeguard the nutritional quality of crops under future elevated CO2 concentrations

Koehler, I.; Huber, S.; Bernacchi, C.; Baxter, I.

10.1101/344663 — plant biology — Posted on 2018-06-20

840 IRON MAN, a ubiquitous family of peptides that control iron transport in plants

Grillet, L.; Lan, P.; Li, W.; Mokkapati, G.; Schmidt, W.

10.1101/351635 — plant biology — Posted on 2018-06-20

841 Parasitoid wasp venom elevates sorbitol and alters expression of metabolic genes in human kidney cells

Siebert, A. L.; Doucette, L. A.; Simpson-Haidaris, P. J.; Werren, J. H.

10.1101/351031 — pharmacology and toxicology — Posted on 2018-06-20

842 A signature of cognitive deficits and brain atrophy that is highly predictive of progression to Alzheimer’s dementia

Tam, A.; Dansereau, C.; Iturria-Medina, Y.; Urchs, S.; Orban, P.; Breitner, J.; Bellec, P.; Alzheimer's Disease Neuroimaging Initiative,

10.1101/352344 — neuroscience — Posted on 2018-06-20

843 No evidence that frontal eye field tDCS affects latency or accuracy of prosaccades

Reteig, L. C.; Knapen, T.; Roelofs, F. J. F. W.; Ridderinkhof, K. R.; Slagter, H. A.

10.1101/351304 — neuroscience — Posted on 2018-06-20

844 Saccades and Handedness Interact to Affect Scene Memory

Ellmore, T. M.; Mackin, B.; Ng, K.

10.1101/351486 — neuroscience — Posted on 2018-06-20

845 fMRI repetition suppression reveals no sensitivity to trait judgments from faces along the ventral visual stream or in the theory-of-mind network

Butler, E.; Ward, R.; Downing, P.; Ramsey, R.

10.1101/351783 — neuroscience — Posted on 2018-06-20

846 No evidence that predictions and attention modulate the first feedforward sweep of cortical information processing

Alilovic, J.; Timmermans, B.; Reteig, L. C.; Gaal, S. v.; Slagter, H. A.

10.1101/351965 — neuroscience — Posted on 2018-06-20

847 Applying biophysical models to understand the role of white matter in cognitive development

Huber, E.; Henriques, R. N.; Owen, J. P.; Rokem, A.; Yeatman, J. D.

10.1101/347872 — neuroscience — Posted on 2018-06-20

848 Longitudinally Mapping Childhood Socioeconomic Status Associations with Cortical and Subcortical Morphology

McDermott, C. L.; Seidlitz, J.; Nadig, A.; Liu, S.; Clasen, L. S.; Blumenthal, J. D.; Reardon, P. K.; Lalonde, F.; Patel, R.; Chakravarty, M.; Lerch, J.; Raznahan, A.

10.1101/352187 — neuroscience — Posted on 2018-06-20

849 Sonic stimulation, and low power microwave radiation can modulate bacterial virulence towards Caenorhabditis elegans

Patel, P.; Patel, H.; Vekariya, D.; Joshi, C.; Patel, P.; Muskal, S.; Kothari, V.

10.1101/351924 — microbiology — Posted on 2018-06-20

850 Chromosome polymorphisms track trans-Atlantic divergence, admixture and adaptive evolution in salmon

Lehnert, S. J.; Bentzen, P.; Kess, T.; Lien, S.; Horne, J. B.; Clement, M.; Bradbury, I. R.

10.1101/351338 — genomics — Posted on 2018-06-20

851 S-CAP extends clinical-grade pathogenicity prediction to genetic variants that affect RNA splicing

Jagadeesh, K. A.; Paggi, J. M.; Ye, J. S.; Stenson, P. D.; Cooper, D. N.; Bernstein, J. A.; Bejerano, G.

10.1101/343749 — genomics — Posted on 2018-06-20

852 Genome-wide association study of circadian rhythmicity in 71 500 UK Biobank participants and polygenic association with mood instability

Ferguson, A.; Lyall, L. M.; Ward, J.; Strawbridge, R. J.; Cullen, B.; Graham, N.; Niedzwiedz, C. L.; Johnston, K. J.; MacKay, D.; Biello, S. M.; Pell, J. P.; Cavanagh, J.; McIntosh, A. M.; Doherty, A.; Bailey, M. E.; Lyall, D. M.; Wyse, C. A.; Smith, D. J.

10.1101/350983 — genomics — Posted on 2018-06-20

853 Antibiotic-driven Escape of Host in a Parasite-induced Red Queen Dynamics

Rabajante, J. F.; Anzia, E. L.

10.1101/351940 — evolutionary biology — Posted on 2018-06-20

854 Mutational load, inbreeding depression and heterosis in subdivided populations

Charlesworth, B.

10.1101/352146 — evolutionary biology — Posted on 2018-06-20

855 The quiescent X, the replicative Y and the Autosomes

Achaz, G.; Gangloff, S.; Arcangioli, B.

10.1101/351288 — evolutionary biology — Posted on 2018-06-20

856 In rapidly adapting asexuals, the orientation of G can reflect selection rather than functional constraints

Gomez, K.; Bertram, J.; Masel, J.

10.1101/351171 — evolutionary biology — Posted on 2018-06-20

857 The role of sexual conflict, sexual selection and ancestry in the evolution of chemical sexual signals

Dutta, R.; Chechi, T. S.; Prasad, N. G.

10.1101/351718 — evolutionary biology — Posted on 2018-06-20

858 Trade-offs in provisioning and stability of multiple ecosystem services in agroecosystems

Montoya, D.; Haegeman, B.; Gaba, S.; De Mazancourt, C.; Bretagnolle, V.; Loreau, M.

10.1101/350967 — ecology — Posted on 2018-06-20

859 Turing patterns are common but not robust

Scholes, N. S.; Schnoerr, D.; Isalan, M.; Stumpf, M. P. H.

10.1101/352302 — developmental biology — Posted on 2018-06-20

860 Cancer stemness, intratumoral heterogeneity, and immune response across cancers

Miranda, A.; Hamilton, P. T.; Zhang, A. W.; Becht, E.; Mezheyeuski, A.; Bruun, J.; Micke, P.; De Reynies, A.; Nelson, B. H.

10.1101/352559 — cancer biology — Posted on 2018-06-20

861 OpenPathSampling: A Python framework for path sampling simulations. I. Basics

Swenson, D. W. H.; Prinz, J.-H.; Noe, F.; Chodera, J. D.; Bolhuis, P. G.

10.1101/351494 — biophysics — Posted on 2018-06-20

862 Structural basis for cholesterol transport-like activity of the Hedgehog receptor Patched

Zhang, Y.; Bulkley, D. P.; Roberts, K. J.; Xin, Y.; Asarnow, D.; Sharma, A.; Myers, B. R.; Cho, W.; Cheng, Y.; Beachy, P. A.

10.1101/352443 — biophysics — Posted on 2018-06-20

863 Radiogenomics-based Risk Prediction of Glioblastoma Multiforme with Clinical Relevance

Qian, X.; Tan, H.; Chen, W.; Zhao, W.; Chan, M.; Zhou, X.

10.1101/350934 — bioinformatics — Posted on 2018-06-20

864 Real Time Normalization of Fast Photochemical Oxidation of Proteins Experiments by Inline Adenine Radical Dosimetry

Sharp, J. S.; Misra, S. K.; Persoff, J. J.; Egan, R. W.; Weinberger, S. R.

10.1101/352385 — biochemistry — Posted on 2018-06-20

865 Time preferences are reliable across time-horizons and verbal vs. experiential tasks

Lukinova, E.; Wang, Y.; Lehrer, S. F.; Erlich, J. C.

10.1101/351312 — animal behavior and cognition — Posted on 2018-06-20

866 Precise tuning of gene expression output levels in mammalian cells

Michaels, Y. S.; Barnkob, M. B.; Barbosa, H.; Baeumler, T. A.; Thompson, M. K.; Andre, V.; Colin-York, H.; Fritzsche, M.; Gileadi, U.; Sheppard, H. M.; Knapp, D. J.; Milne, T. A.; Cerundolo, V.; Fulga, T. A.

10.1101/352377 — synthetic biology — Posted on 2018-06-20

867 Mean-field model for the dynamics of conductance-based networks of excitatory and inhibitory spiking neurons with adaptation

di Volo, M.; Romagnoni, A.; Capone, C.; Destexhe, A.

10.1101/352393 — neuroscience — Posted on 2018-06-20

868 The Role of Location-Context Binding in Nonspatial Visual Working Memory

Cai, Y.; Yu, Q.; Sheldon, A.; Postle, B.

10.1101/352435 — neuroscience — Posted on 2018-06-20

869 Separable recruitment of DNA Polymerase α for leading- and lagging-strand replication initiation

Porcella, S. Y.; Morse, N. C.; Tang, C. P.; Srivastava, P.; Smith, D. J.

10.1101/352567 — molecular biology — Posted on 2018-06-20

870 Role of clathrin-mediated endocytosis in the use of heme and hemoglobin by the fungal pathogen Cryptococcus neoformans

Bairwa, G.; Caza, M.; Horianopoulos, L.; Hu, G.; Kronstad, J. W.

10.1101/352534 — microbiology — Posted on 2018-06-20

871 An epitope-resurfaced virus-like particle can induce broad neutralizing antibody against four serotypes of dengue virus

Shen, W.-F.; Galula, J. U.; Liu, J.-H.; Liao, M.-Y.; Huang, C.-H.; Wang, Y.-C.; Wu, H.-C.; Liang, J.-J.; Lin, Y.-L.; Whitney, M. T.; Chang, G.-J. J.; Chen, S.-R.; Wu, S.-R.; Chao, D.-Y.

10.1101/351700 — microbiology — Posted on 2018-06-20

872 Intestinal NF-κB and STAT signalling is important for uptake and clearance in a Drosophila-Herpetomonas interaction model.

Wang, L.; Sloan, M.; Ligoxygakis, P.

10.1101/352369 — immunology — Posted on 2018-06-20

873 The MS4A gene cluster is a key regulator of soluble TREM2 and Alzheimer disease risk

Deming, Y.; Filipello, F.; Cignarella, F.; Hsu, S.; Mikesell, R.; Li, Z.; Del-Aguila, J. L.; Dube, U.; Farias, F. G.; Bradley, J.; Cantoni, C.; Benitez, B.; Budde, J.; Ibanez, L.; Fernandez, M. V.; Blennow, K.; Nellgard, B.; Zetterberg, H.; Heslegrave, A.; Johansson, P. M.; Svensson, J.; Lleo, A.; Alcolea, D.; Clarimon, J.; Rami, L.; Molinuevo, J. L.; Suarez-Calvet, M.; Morenas-Rodriguez, E.; Kleinberger, G.; Ewers, M.; Brett, T. J.; Haass, C.; Harari, O.; Karch, C. M.; Piccio, L.; Cruchaga, C.

10.1101/352179 — genomics — Posted on 2018-06-20

874 Dissecting PCNA function with a systematically designed mutation library in yeast

Dai, J.; Jiang, Q.; Zhang, W.; Liu, C.; Lin, Y.; Wu, Q.

10.1101/352286 — genetics — Posted on 2018-06-20

875 Uncovering natural longevity alleles from intercrossed pools of aging fission yeast cells

Ellis, D. A.; Mustonen, V.; Rodriguez-Lopez, M.; Rallis, C.; Malecki, M.; Jeffares, D.; Bahler, J.

10.1101/352583 — genetics — Posted on 2018-06-20

876 Finite size effects in diffusive public goods games

Gerlee, P.; Altrock, P. M.

10.1101/352492 — ecology — Posted on 2018-06-20

877 Biased signaling downstream of epidermal growth factor receptor regulates proliferative versus apoptotic response to ligand

Ali, R.; Brown, W.; Purdy, S. C.; Davisson, V. J.; Wendt, M.

10.1101/352526 — cancer biology — Posted on 2018-06-20

878 BioJupies: Automated Generation of Interactive Notebooks for RNA-seq Data Analysis in the Cloud

Torre, D.; Lachmann, A.; Ma'ayan, A.

10.1101/352476 — bioinformatics — Posted on 2018-06-20

879 Characterizing Building Blocks of Resource Constrained Biological Networks

Ren, Y.; Ay, A.; Dobra, A.; Kahveci, T.

10.1101/352450 — bioinformatics — Posted on 2018-06-20

880 DoubletFinder: Doublet detection in single-cell RNA sequencing data using artificial nearest neighbors

McGinnis, C. S.; Murrow, L. M.; Gartner, Z. J.

10.1101/352484 — bioinformatics — Posted on 2018-06-20

881 Non-invasive ultrasonic modulation of visual evoked response by GABA delivery through the blood brain barrier

Constans, C.; Ahnine, H.; Santin, M.; Lehericy, S.; Tanter, M.; Pouget, P.; Aubry, J.-F.

10.1101/351270 — neuroscience — Posted on 2018-06-20

882 Elucidating the active interaction mechanism of phytochemicals withanolide and withanoside derivatives with human serum albumin

Dubey, S.; Kallubai, M.; Sarkar, A.; Subramanyam, R.

10.1101/352575 — biophysics — Posted on 2018-06-20

883 Evidence of inverse cascades in the cerebral dynamics: Spontaneous symmetry breaking during arterial inflow

Kerskens, C.; Lopez Perez, D.

10.1101/219931 — physiology — Posted on 2018-06-20

884 Measuring narrative engagement: The heart tells the story

Richardson, D. C.; Griffin, N. K.; Zaki, L.; Stephenson, A.; Yan, J.; Hogan, J.; Skipper, J. I.; Devlin, J. T.

10.1101/351148 — neuroscience — Posted on 2018-06-20

885 Understanding RNP remodelling uncovers RBPs functionally required for viral replication

Garcia-Moreno, M.; Noerenberg, M.; Ni, S.; Jarvelin, A. I.; Gonzalez-Almela, E.; Lenz, C.; Bach-Pages, M.; Cox, V.; Avolio, R.; Davis, T.; Hester, S.; Sohier, T. J.; Li, B.; Sanz, M. A.; Carrasco, L.; Ricci, E. P.; Pelechano, V.; Fischer, B.; Mohammed, S.; Castello, A.

10.1101/350686 — molecular biology — Posted on 2018-06-20

886 Exploration of miRNA-mediated fertility regulation network of cytoplasmic male sterility during flower bud development in soybean

Ding, X.; Zhang, H.; Ruan, H.; Li, Y.; Chen, L.; Wang, T.; Jin, L.; Li, X.; Yang, S.; Gai, J.

10.1101/351163 — genomics — Posted on 2018-06-20

887 Robust genome editing with short single-stranded and long, partially single-stranded DNA donors in C. elegans

Mello, C.; Dokshin, G. A.; Ghanta, K. S.; Piscopo, K. M.

10.1101/352260 — genetics — Posted on 2018-06-20

888 Single cell expression analysis uncouples transdifferentiation and reprogramming

Francesconi, M.; Di Stefano, B.; Berenguer, C.; de Andres, M.; Mendez Lago, M.; Guillaumet-Adkins, A.; Rodriguez-Esteban, G.; Gut, M.; Gut, I.; Heyn, H.; Lehner, B.; Graf, T.

10.1101/351957 — developmental biology — Posted on 2018-06-20

889 Regulatory network controlling tumor-promoting inflammation in human cancers

Ji, Z.; He, L.; Regev, A.; Struhl, K.

10.1101/352062 — cancer biology — Posted on 2018-06-20

890 Reproducible big data science: A case study in continuous FAIRness

Madduri, R. K.; Chard, K.; D'Arcy, M.; Jung, S. C.; Rodriguez, A.; Sulakhe, D.; Deutsch, E. W.; Funk, C.; Heavner, B.; Richards, M.; Shannon, P.; Glusman, G.; Price, N.; Kesselman, C.; Foster, I.

10.1101/268755 — bioinformatics — Posted on 2018-06-20

891 Polyploidy and elevation contribute to opposing latitudinal gradients in diversification and species richness in lady ferns (Athyriaceae)

Wei, R.; Ree, R. H.; Sundue, M. A.; Zhang, X.-C.

10.1101/351080 — plant biology — Posted on 2018-06-20

892 TTL proteins scaffold brassinosteroid signaling components at the plasma membrane to optimize signal transduction in plant cells

Amorim-Silva, V.; Garcia-Moreno, A.; Castillo, A. G.; Lakhssassi, N.; Perez-Sancho, J.; Li, Y.; Esteban del Valle, A.; Pose, D.; Perez-Rodriguez, J.; Lin, J.; Valpuesta, V.; Borsani, O.; Zipfel, C.; Macho, A. P.; Botella, M. A.

10.1101/351056 — molecular biology — Posted on 2018-06-20

893 The synchronization and adaptation of Neurospora crassa circadian and conidiation rhythms to short light-dark cycles

Guo, J.; Ma, H.; Li, L.; Yan, J.; Zhang, Y.; Shi, W.; Li, Y.; Gao, M.; Pan, S.; Yang, L.

10.1101/351189 — microbiology — Posted on 2018-06-20

894 Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis

Ernst, C.; Eling, N.; Martinez-Jimenez, C. P.; Marioni, J. C.; Odom, D. T.

10.1101/350868 — developmental biology — Posted on 2018-06-20

895 Timed collinear activation of Hox genes during gastrulation controls the avian forelimb position

Moreau, C.; Caldarelli, P.; Rocancourt, D.; Roussel, J.; Denans, N.; Pourquie, O.; Gros, J.

10.1101/351106 — developmental biology — Posted on 2018-06-20

896 Cardiac differentiation at single cell resolution reveals a requirement of hypertrophic signaling for HOPX transcription

Friedman, C.; Nguyen, Q.; Lukowski, S.; Helfer, A.; Chiu, H.; Voges, H.; Suo, S.; Han, J.-D.; Osteil, P.; Peng, G.; Jing, N.; Ballie, G.; Senabouth, A.; Christ, A.; Bruxner, T.; Murry, C.; Wong, E.; Ding, J.; Wang, Y.; Hudson, J.; Bar-Joseph, Z.; Tam, P.; Powell, J.; Palpant, N.

10.1101/229294 — developmental biology — Posted on 2018-06-20

897 Endoplasmic reticulum stress may activate NLRP3 inflammasomes via TXNIP in preeclampsia

Yang, Y.; Li, J.; Han, T.-L.; Zhou, X.; Qi, H.; Baker, P. N.; Zhou, W.; Zhang, H.

10.1101/351650 — cell biology — Posted on 2018-06-20

898 Inferring rates of metastatic dissemination using stochastic network models

Gerlee, P.; Johansson, M.

10.1101/352096 — cancer biology — Posted on 2018-06-20

899 Speed Control and Force-Vectoring of Blue Bottle Flies in a Magnetically-Levitated Flight Mill

Hsu, S.-J.; Thakur, N.; Cheng, B.

10.1101/351445 — bioengineering — Posted on 2018-06-20

900 An atomic-scale view at the composition ofamyloid-beta fibrils by atom probe tomography

Rusitzka, K. A. K.; Stephenson, L. T.; Szczepaniak, A.; Gremer, L.; Raabe, D.; Willbold, D.; Gault, B.

10.1101/351973 — biochemistry — Posted on 2018-06-20

901 Influenza Virus Infection Model With Density Dependence Supports Biphasic Viral Decay

Smith, A. P.; Moquin, D. J.; Bernhauerova, V.; Smith, A. M.

10.1101/253401 — systems biology — Posted on 2018-06-20

902 Potent Cas9 inhibition in bacterial and human cells by new anti-CRISPR protein families

Lee, J.; Mir, A.; Edraki, A.; Garcia, B.; Amrani, N.; Lou, H. E.; Gainetdinov, I.; Pawluk, A.; Ibraheim, R.; Gao, X. D.; Liu, P.; Davidson, A. R.; Maxwell, K. L.; Sontheimer, E. J.

10.1101/350504 — molecular biology — Posted on 2018-06-20

903 Lineage segregation, pluripotency and X-chromosome inactivation in the pig pre-gastrulation embryo

Ramos-Ibeas, P.; Sang, F.; Zhu, Q.; Tang, W. W. C.; Withey, S.; Klisch, D.; Loose, M.; Surani, A.; Alberio, R.

10.1101/347823 — developmental biology — Posted on 2018-06-20

904 Stable networks of water-mediated interactions are conserved in activation of diverse GPCRs

Venkatakrishnan, A. J.; Ma, A.; Fonseca, R.; Latorraca, N.; Kelly, B.; Betz, R.; Asawa, C.; Kobilka, B.; Dror, R.

10.1101/351502 — biophysics — Posted on 2018-06-20

905 Mobilization of Pack-CACTA transposons in Arabidopsis reveals the mechanism of gene shuffling

Catoni, M.; Jonesman, T.; Cerruti, E.; Paszkowski, J.

10.1101/342816 — genetics — Posted on 2018-06-20

906 Neighborhood size-effects in nonlinear public goods games

Kimmel, G. J.; Gerlee, P.; Brown, J. S.; Altrock, P. M.

10.1101/347401 — ecology — Posted on 2018-06-20

907 Targeted substrate degradation by Kelch controls the actin cytoskeleton during ring canal expansion

Hudson, A. M.; Mannix, K. M.; Gerdes, J. A.; Kottemann, M. C.; Cooley, L.

10.1101/315077 — developmental biology — Posted on 2018-06-20

908 Exploratory analyses suggest less cognitive decline on nilvadipine treatment in very mild Alzheimer’s disease subjects

Abdullah, L.; Crawford, F.; Langlois, H.; Hendrix, S.; Kennelly, S.; Lawlor, B.; Mullan, M.

10.1101/345652 — clinical trials — Posted on 2018-06-20

909 Carriage of Supernumerary Sex Chromosomes Decreases the Volume and Alters the Shape of Limbic Structures.

Nadig, A.; Reardon, P. K.; Seidlitz, J.; McDermott, C. L.; Blumenthal, J. D.; Clasen, L. S.; Lalonde, F.; Lerch, J.; Chakravarty, M. M.; Raznahan, A.

10.1101/346767 — neuroscience — Posted on 2018-06-20

910 Evaluating fMRI-Based Estimation of Eye Movements during Naturalistic Viewing

Son, J.; Ai, L.; Xu, T.; Colcombe, S.; LaConte, S.; Lisinski, J.; Klein, A.; Craddock, C.; Milham, M.

10.1101/347765 — neuroscience — Posted on 2018-06-20

911 TORC1 modulation in adipose tissue is required for organismal adaptation to hypoxia in Drosophila.

Lee, B.; Barretto, E. C.; Grewal, S. S.

10.1101/350520 — developmental biology — Posted on 2018-06-20

912 A data-driven interactome of synergistic genes improves network based cancer outcome prediction

Allahyar, A.; Ubels, J.; de Ridder, J.

10.1101/349688 — bioinformatics — Posted on 2018-06-20

913 Empowering conservation practice with efficient and economical genotyping from poor quality samples using mPCRseq

Natesh, M.; Taylor, R.; Truelove, N.; Hadly, E.; Palumbi, S.; Ramakrishnan, U.; Petrov, D.

10.1101/349472 — genomics — Posted on 2018-06-20

914 Diverse haplotypes span human centromeres and include archaic lineages within and out of Africa

Langley, S. A.; Miga, K.; Karpen, G. H.; Langley, C. H.

10.1101/351569 — genomics — Posted on 2018-06-20

915 Non-invasive imaging reveals conditions that impact distribution and persistence of cells after in vivo administration

Scarfe, L.; Taylor, A.; Sharkey, J.; Harwood, R.; Barrow, M.; Comenge, J.; Beeken, L.; Astley, C.; Santeramo, I.; Hutchinson, C.; Ressel, L.; Smythe, J.; Austin, E.; Levy, R.; Rosseinsky, M. J.; Adams, D. J.; Poptani, H.; Park, B. K.; Murray, P.; Wilm, B.

10.1101/202101 — cell biology — Posted on 2018-06-20

916 Testing the possibility of model-based Pavlovian control of attention to threat

Talmi, D.; Slapkova, M.; Wieser, M. J.

10.1101/288027 — neuroscience — Posted on 2018-06-20

917 Soil microbial habitats in an extreme desert Mars-analogue environment

Warren-Rhodes, K.; Lee, K.; Archer, S.; Lacap, D.; Ng-Boyle, L.; Wettergreen, D.; Zacny, K.; Demergasso, C.; Moersch, J.; Chong, G.; Vijayarangan, S.; Thebes, C.; Wagner, M.; Tanaka, K.; Hare, T.; Tate, C.; Wang, A.; Wei, J.; Foil, G.; Cabrol, N.; Pointing, S.

10.1101/269605 — microbiology — Posted on 2018-06-20

918 Cellular Adaptive Response and Regulation of HIF after Low Dose Gamma-radiation Exposure

Gandhi, N. M.

10.1101/316943 — biophysics — Posted on 2018-06-20

919 Cryo-EM structure of the benzodiazepine-sensitive α1β1γ2 heterotrimeric GABAA receptor in complex with GABA illuminates mechanism of receptor assembly and agonist binding

Phulera, S.; Zhu, H.; Yu, J.; Claxton, D.; Yoder, N.; Yoshioka, C.; Gouaux, E.

10.1101/337659 — biophysics — Posted on 2018-06-20

920 Lag Penalized Weighted Correlation for Time Series Clustering

Chandereng, T.; Gitter, A.

10.1101/292615 — bioinformatics — Posted on 2018-06-20

921 Dissecting changes and differences of selective pressures in the evolution of human pigmentation

Huang, X.; Wang, S.; He, Y.; Jin, L.

10.1101/253963 — evolutionary biology — Posted on 2018-06-20

922 Enhanced context reveals the scope of somatic missense mutations driving human cancers

Tokheim, C.; Karchin, R.

10.1101/313296 — bioinformatics — Posted on 2018-06-20

923 Computational model of chimeric antigen receptors explains site-specific phosphorylation kinetics

Rohrs, J. A.; Zheng, D.; Graham, N. A.; Wang, P.; Finley, S.

10.1101/262527 — systems biology — Posted on 2018-06-20

924 Cofactors revisited - predicting the impact of flavoprotein-related diseases on a genome scale

Wegrzyn, A. B.; Stolle, S.; Rienksma, R. A.; Martins dos Santos, V. A. P.; Bakker, B. M.; Suarez-Diez, M.

10.1101/343624 — systems biology — Posted on 2018-06-20

925 Interleukin 22 mediates interleukin 23-induced pathology in newborn mice by disrupting the function of pancreatic and intestinal cells

Furtado, G. C.; Chen, L.; Strohmeier, V.; He, Z.; Deshpande, M.; Durum, S. K.; Moran, T. M.; Kraus, T.; Faith, J. J.; Lira, S. A.

10.1101/346577 — immunology — Posted on 2018-06-20

926 The impact of surveillance and control on highly pathogenic avian influenza outbreaks in poultry in Dhaka division, Bangladesh

Hill, E. M.; House, T.; Dhingra, M. S.; Kalpravidh, W.; Morzaria, S.; Osmani, M. G.; Brum, E.; Yamage, M.; Kalam, M. A.; Prosser, D. J.; Takekawa, J. Y.; Xiao, X.; Gilbert, M.; Tildesley, M. J.

10.1101/193177 — epidemiology — Posted on 2018-06-20

927 Identification and characterization of cherry (Cerasus pseudocerasus G. Don) genes in response to parthenocarpy induced by GA3 through transcriptome analysis

wen, b.; Song, W.; Sun, M.; Chen, M.; Mu, Q.; Zhang, X.; Chen, X.; Gao, D.; Xiao, W.; no,

10.1101/351775 — molecular biology — Posted on 2018-06-20

928 Diverse Escherichia coli lineages, from domestic animals and humans in a household, carry colistin resistance gene mcr-1 in Ecuador

Loayza Villa, M. F.; Salinas, L.; Villavivencio, F.; Rafael, T.; Salas, S.; Rivera, R.; Villacis, J.; Satan, C.; Ushina, L.; Munoz, O.; Zurita, J.; Melano, R. G.; Tijet, N.; Reyes, J.; Trueba, G.

10.1101/350587 — microbiology — Posted on 2018-06-20

929 The transferable resistome of produce

Blau, K.; Bettermann, A.; Jechalke, S.; Fornefeld, E.; Vanrobaeys, Y.; Stalder, T.; Top, E. M.; Smalla, K.

10.1101/350629 — microbiology — Posted on 2018-06-20

930 Comparison of the effects of metformin on MDA-MB-231 breast cancer cells in a monolayer culture and in tumour spheroids as a function of nutrient concentrations

Bizjak, M.; Malavasic, P.; Pirkmajer, S.; Pavlin, M.

10.1101/351742 — cancer biology — Posted on 2018-06-20

931 Pediatric Bone Age Assessment Using Deep Convolutional Neural Networks

Iglovikov, V.; Rakhlin, A.; Kalinin, A. A.; Shvets, A.

10.1101/234120 — pathology — Posted on 2018-06-20

932 Automatic Instrument Segmentation in Robot-Assisted Surgery Using Deep Learning

Shvets, A.; Rakhlin, A.; Kalinin, A. A.; Iglovikov, V.

10.1101/275867 — bioengineering — Posted on 2018-06-20

933 Achieving the Endgame: Integrated NTD Case Searches

Buyon, L. E.; Slaven, R.; Emerson, P. M.; King, J.; Debrah, O.; Aboe, A.; Ruiz-Tiben, E.; Callahan, K.

10.1101/352336 — epidemiology — Posted on 2018-06-20

934 Conditional interactions in literature-curated protein interaction databases

Stacey, R. G.; Skinnider, M. A.; Chik, J.; Foster, L. J.

10.1101/352328 — bioinformatics — Posted on 2018-06-20

935 A theoretical analysis of single molecule protein sequencing via weak binding spectra

Rodriques, S.; Marblestone, A. H.; Boyden, E. S.

10.1101/352310 — bioengineering — Posted on 2018-06-20

936 A novel combination of cyclophosphamide and anti-ICOS mAb prevents tumor growth by affecting regulatory T cells in mice with a human immune system

Burlion, A.; Ramos, R.; Sendeyo, K.; Corneau, A.; Caux, C.; Piaggio, E.; Olive, D.; Caux, C.; Marodon, G.

10.1101/191031 — immunology — Posted on 2018-06-20

937 Changes of gene expression but not cytosine methylation are associated with plasticity of male parental care reflecting behavioural state, social context, and individual flexibility

Cunningham, C. B.; Ji, L.; McKinney, E. C.; Benowitz, K. M.; Schmitz, R. J.; Moore, A. J.

10.1101/139634 — genetics — Posted on 2018-06-20

938 Novel Locus Influencing Retinal Venular Tortuosity Is Also Associated With Risk Of Coronary Artery Disease

Veluchamy, A.; Ballerini, L.; Vitart, V.; Hayward, C.; Schraut, K.; Joshi, P.; Campbell, H.; Kirin, M.; Relan, D.; Harris, S.; Brown, E.; Vaidya, S.; Dhillon, B.; Zhou, K.; Pearson, E.; Polasek, O.; Deary, I.; MacGillivray, T.; Wilson, J.; Trucco, E.; Palmer, C.; Doney, A.

10.1101/121012 — genomics — Posted on 2018-06-20

939 Potential PGPR properties of cellulolytic, nitrogen-fixing, and phosphate-solubilizing bacteria of a rehabilitated tropical forest soil

Tang, A.; Haruna, A. O.; Ab. Majid, N. M.

10.1101/351916 — microbiology — Posted on 2018-06-20

940 Learned predictiveness acquired through experience prevails over the influence of conflicting verbal instructions in rapid selective attention

Cobos Cano, P. L.; Vadillo, M. A.; Luque, D.; Le Pelley, M. E.

10.1101/351908 — animal behavior and cognition — Posted on 2018-06-20

941 Variation and diversification of the microbiome of Schlechtendalia chinensis on two alternate host plants

Wu, H.; Chen, X.; Chen, H.; Lu, Q.; Ren, W.; Yang, Z.; Liu, J.; Shao, X. S.; Wang, C.; King-Jones, K.; Chen, M.-S.

10.1101/351882 — microbiology — Posted on 2018-06-20

942 Hygroregulation, a key ability for eusocial insects: Native Western European bees as a case study

Eouzan, I.; Garnery, L.; Pinto, M. A.; Delalande, D.; Neves, C.; Fabre, F.; Lesobre, J.; Houte, S.; Estonba, A.; Montes, I.; Sime-Ngando, T.; Biron, D.

10.1101/351874 — ecology — Posted on 2018-06-20

943 In vitro toxicity and efficacy of verdinexor, an exportin 1 inhibitor, on opportunistic viruses affecting immunocompromised individuals

Widman, D. G.; Gornisiewicz, S.; Shacham, S.; Tamir, S.

10.1101/351825 — microbiology — Posted on 2018-06-20

944 High-performance biodegradable membrane for point of need paper-based micro-scale microbial fuel cell analytical devices

Gonzalez-Pabon, M. J.; Figueredo, F.; Martinez-Casillas, D. C.; Corton, E.

10.1101/351890 — microbiology — Posted on 2018-06-20

945 Attenuation of obesity and related metabolic disorders by the individual or combination treatment with IL-2/anti-IL-2 complex and hyperbaric oxygen

Choi, E.-J.; Kim, H.-R.; Kie, J.-H.; Moon, B.-I.; Seoh, J.-Y.

10.1101/351841 — immunology — Posted on 2018-06-20

946 Phylogenetic relationships in the genus Avena based on the nuclear Pgk1 gene

Peng, Y.; Zhou, P.; Zhao, J.; Li, J.; Lai, S.; Tinker, N. A.; Liao, S.; Yan, H.

10.1101/351866 — evolutionary biology — Posted on 2018-06-20

947 Exploring trend and barriers of antenatal care utilization using data mining: evidence from EDHS of 2000 to 2016

Abegaz, K. H.

10.1101/351858 — epidemiology — Posted on 2018-06-20

948 One size does not fit all: Caste and sex differences in the response of bumblebees (Bombus impatiens) to chronic oral neonicotinoid exposure.

Mobley, M. W.; Gegear, R. J.

10.1101/351809 — ecology — Posted on 2018-06-20

949 Target localization across saccades and at fixation: Nontargets both facilitate and bias responses

Zhang, X.; Golomb, J. D.

10.1101/351833 — neuroscience — Posted on 2018-06-20

950 Effects of vitamin D on inflammatory and oxidative stress responses of human bronchial epithelial cells exposed to particulate matter.

Pfeffer, P. E.; Lu, H.; Mann, E. H.; Chen, Y. H.; Ho, T.-R.; Cousins, D. J.; Corrigan, C.; Kelly, F. J.; Mudway, I. S.; Hawrylowicz, C. M.

10.1101/351791 — immunology — Posted on 2018-06-20

951 Beyond Climatic Variation: Human Disturbances Alter the Effectiveness of a Protected Area to Reduce Fires in Tropical Peatlands of Sumatra, Indonesia

Imron, M. A.; Widyastuti, K.; Satria, R. A.; Prayoga, W.; Pradopo, S. T.; Suryatmojo, H.; Sopha, B. M.; Berger, U.

10.1101/351817 — ecology — Posted on 2018-06-20

952 Enzyme Immunoassays May Be Inaccurate: Familiar Correlates of Male Testosterone (T) Replicate in Britons when T is Measured by Mass Spectrometry but Do Not Replicate in Americans When T is Measured by Enzyme Immunoassay

Mazur, A.; Clifton, S.

10.1101/351734 — physiology — Posted on 2018-06-20

953 Transcriptome analysis of Culter alburnus gonad tissues for discovery of sex-related genes

Zheng, J.; Jia, Y.; Liu, S.; Jiang, W.; Chi, M.; Cheng, S.; Gu, Z.

10.1101/351759 — bioinformatics — Posted on 2018-06-20

954 Complexin cooperates with Bruchpilot to tether synaptic vesicles to the active zone cytomatrix

Scholz, N.; Ehmann, N.; Sachidanandan, D.; Imig, C.; Cooper, B. H.; Jahn, O.; Reim, K.; Brose, N.; Pauli, M.; Heckmann, M.; Stigloher, C.; Langenhan, T.; Kittel, R. J.

10.1101/350207 — neuroscience — Posted on 2018-06-20

955 A Mechanism for Synaptic Copy between Neural Circuits

Shao, Y.; Wang, B.; Sornborger, A.; Tao, L.

10.1101/351114 — neuroscience — Posted on 2018-06-20

956 Functional Analysis of TM6 MADS box gene in the Octoploid Strawberry by CRISPR/Cas9 directed mutagenesis

Martin-Pizarro, C.; Trivino, J. C.; Pose, D.

10.1101/351296 — molecular biology — Posted on 2018-06-20

957 TORC1 modulation in adipose tissue is required for organismal adaptation to hypoxia in Drosophila.

Grewal, S.; Lee, B.; Berretto, E. C.

10.1101/350520 — developmental biology — Posted on 2018-06-20

958 An Organometallic Ir(III) Molecular Probe for Imaging Microtubules in Fluorescence and Electron Microscopy

Battaglia, X. T.; De Pace, C.; Ruiz-Perez, L.; Chen, B.; Su, R.; Zhang, M.; Zhang, R.; Zhang, Q.; Wang, Q.; Zhou, H.; Wu, J.; Battaglia, G.; Zhang, Z.; Tian, Y.

10.1101/351098 — cell biology — Posted on 2018-06-20

959 High glucose-induced ubiquitylation of G6PD leads to the injury of podocyte

Zhang, Z.; Wang, M.; Hu, J.; Yan, L.; Yang, Y.; He, M.; Guo, S.; Wu, M.; Li, Q.; Gong, W.; Yang, Y.; Handy, D. E.; Lu, B.; Hao, C.; Wang, Q.; Li, Y.; Hu, R.; Stanton, R. C.

10.1101/350694 — cell biology — Posted on 2018-06-20

960 An atlas of protein-protein interactions across mammalian tissues

Skinnider, M. A.; Scott, N. E.; Prudova, A.; Stoynov, N.; Stacey, R. G.; Gsponer, J.; Foster, L. J.

10.1101/351247 — systems biology — Posted on 2018-06-20

961 Identification of Klebsiella pneumoniae complex members using MALDI-TOF mass spectrometry

Rodrigues, C.; Passet, V.; Brisse, S.

10.1101/350579 — microbiology — Posted on 2018-06-19

962 Using vocational education to provide development solutions in the Pacific: An emphasis on climate change and health

Havea, P. H.; Siga, A.; Rabuatoka, T.; Tamani, A. T.; Devi, P.; Senikula, R.; Hemstock, S. L.; Jacot Des Combes, H.

10.1101/350009 — scientific communication and education — Posted on 2018-06-19

963 Risk of hypoglycemia induced by pivalate-conjugated antibiotics in young children: a population-based retrospective study in Japan

Shiro, H.; Tatebe, Y.; Koyama, T.; Mikami, N.; Kitamura, Y.; Sendo, T.

10.1101/350595 — pharmacology and toxicology — Posted on 2018-06-19

964 Ultra-Rapid Serial Visual Presentation Reveals Dynamics of Feedforward and Feedback Processes in the Ventral Visual Pathway

Mohsenzadeh, Y.; Qin, S.; Cichy, R.; Pantazis, D.

10.1101/350421 — neuroscience — Posted on 2018-06-19

965 Petrobactin protects against oxidative stress and enhances sporulation efficiency in Bacillus anthracis Sterne

Hagan, A. K.; Plotnick, Y. M.; Dingle, R. E.; Mendel, Z. I.; Cendrowski, S. R.; Sherman, D. H.; Tripathi, A.; Hanna, P. C.

10.1101/350611 — microbiology — Posted on 2018-06-19

966 Mechanisms of Host Cell Binding and Neurotropism of Zika Virus

Rieder, C. A.; Rider, J.; Sannajust, S. J.; Goode, D.; Geguchadze, R.; Relich, R. F.; Molliver, D. C.; King, T. E.; Vaughn, J.; May, M.

10.1101/350603 — microbiology — Posted on 2018-06-19

967 The Drosophila SWI/SNF chromatin-remodeling complexes play separate roles in regulating growth and cell fate during regeneration

Tian, Y.; Smith-Bolton, R. K.

10.1101/326439 — developmental biology — Posted on 2018-06-19

968 Early Archean origin of Photosystem II

Cardona, T.; Sanchez-Baracaldo, P.; Rutherford, A. W.; Larkum, A.

10.1101/109447 — evolutionary biology — Posted on 2018-06-19

969 Gene-centric intra- and inter-clade recombination in a context of Escherichia coli subpopulations

Kang, Y.; Shi, X.; Yuan, L.; Chu, Y.; He, Z.; Chen, F.; Gao, Z.; Jia, X.; Lin, Q.; Ma, Q.; Wang, J.; Fu, R.; Wu, J.; Xiao, J.; Hu, S.; Yu, J.

10.1101/122713 — microbiology — Posted on 2018-06-19

970 Developmental genetics of corolla tube formation: role of the tasiRNA-ARF pathway

Ding, B.; Xia, R.; Lin, Q.; Gurung, V.; Sagawa, J. M.; Stanley, L. E.; Strobel, M.; Diggle, P. K.; Meyers, B. C.; Yuan, Y.-W.

10.1101/253112 — plant biology — Posted on 2018-06-19

971 Diabetic Retinopathy detection through integration of Deep Learning classification framework

Rakhlin, A.

10.1101/225508 — pathology — Posted on 2018-06-19

972 snpAD: An ancient DNA genotype caller

Pruefer, K.

10.1101/288258 — bioinformatics — Posted on 2018-06-19

973 PKMζ in the nucleus accumbens acts to dampen cocaine seeking

McGrath, A. G.; Lenz, J. D.; Briand, L. A.

10.1101/320945 — neuroscience — Posted on 2018-06-19

974 Effective population sizes and adaptive genetic variation in a captive bird population

Athrey, G.; Faust, N.; Hieke, A.-S. C.; Brisbin, I. L.

10.1101/307728 — genetics — Posted on 2018-06-19

975 Social learning strategies regulate the wisdom and madness of interactive crowds

Toyokawa, W.; Whalen, A.; Laland, K. N.

10.1101/326637 — animal behavior and cognition — Posted on 2018-06-19

976 Widespread inter-individual gene expression variability in Arabidopsis thaliana

Cortijo, S.; Aydin, Z.; Ahnert, S.; Locke, J.

10.1101/335380 — plant biology — Posted on 2018-06-19

977 NetrinG1/NGL-1 Axis promotes pancreatic tumorigenesis through cancer associated fibroblast derived nutritional supply and immunosuppression

Francescone, R.; Barbosa Vendramini-Costa, D.; Franco-Barraza, J.; Wagner, J.; Muir, A.; Gabitova, L.; Pazina, T.; Luong, T.; Shah, N.; Rollins, D.; Malik, R.; Gupta, S.; Thapa, R.; Restifo, D.; Lau, A.; Zhou, Y.; Cai, K. Q.; Hensley, H.; Nicolas, E.; Kruger, W.; Devarajan, K.; Balachandran, S.; El-Deiry, W. S.; Vander Heiden, M.; Campbell, K. S.; Astsaturov, I.; Cukierman, E.

10.1101/330209 — cancer biology — Posted on 2018-06-19

978 Relative value perception in an insect: positive and negative incentive contrasts in ants

Wendt, S.; Strunk, K. S.; Heinze, J.; Roider, A.; Czaczkes, T. J.

10.1101/330241 — animal behavior and cognition — Posted on 2018-06-19

979 A comprehensive mycofloral diversity of pedosphere, phyllosphere and aerosphere of Som. (Persea bombycina Kost.)

Ray, M. K.; Mishra, P. K.; Das, S.

10.1101/349167 — microbiology — Posted on 2018-06-19

980 Protein nitration is a physiological regulator of cardiac lactate dehydrogenase active site loop mobility and activity

Nogales, C.; Frihoff, J.; Thoenges, D.; Sessions, R. B.; Sickmann, A.; Nedvetskaya, T.; Ibarra-Alvarado, C.; Schmitz, V.; Rosen, P.; Goedecke, A.; Jovanovic, A.; Perlman, D. H.; Klinke, A.; Baldus, S.; Casas, A. I.; Bai, P.; Szabo, C.; Feelisch, M.; Schmidt, H. H. H. W.

10.1101/348789 — biochemistry — Posted on 2018-06-19

981 Coherent chaos in a recurrent neural network with structured connectivity

Landau, I. D.; Sompolinsky, H.

10.1101/350801 — neuroscience — Posted on 2018-06-19

982 Re-identification of genomic data using long range familial searches

Erlich, Y.; Shor, T.; Carmi, S.; Pe'er, I.

10.1101/350231 — genomics — Posted on 2018-06-19

983 Biophysical insights into a highly selective L-arginine-binding lipoprotein of a pathogenic treponeme

Deka, R.; Liu, W.; Tso, S.-C.; Norgard, M.; Brautigam, C.

10.1101/350942 — biophysics — Posted on 2018-06-19

984 Prevalence of subclinical ketosis and production diseases in dairy cows in Central and South America, Africa, Asia, Australia and New Zealand, and Eastern Europe

Brunner, N.; Groeger, S.; Canelas Raposo, J.; Bruckmaier, R. M.; Gross, J. J.

10.1101/314898 — physiology — Posted on 2018-06-19

985 Sexual selection and inbreeding: two efficient ways to limit the accumulation of deleterious mutations

Noel, E.; Fruitet, E.; Lelaurin, D.; Bonel, N.; Segard, A.; Sarda, V.; Jarne, P.; David, P.

10.1101/273367 — evolutionary biology — Posted on 2018-06-19

986 Diffusion-weighted magnetic resonance spectroscopy enables cell-specific monitoring of astrocyte reactivity in vivo

Ligneul, C.; Hernandez-Garzon, E.; Palombo, M.; Carrillo-de Sauvage, M.-A.; Flament, J.; Hantraye, P.; Brouillet, E.; Bonvento, G.; Escartin, C.; Valette, J.

10.1101/350306 — bioinformatics — Posted on 2018-06-19

987 CMT3 and SUVH4/KYP silence the exonic retroelement Evelknievel to allow for reconstitution of CMT1 mRNA

Yadav, N.; Khadka, J.; Zemach, A.; Grafi, G.

10.1101/332239 — plant biology — Posted on 2018-06-19

988 Speed-Selectivity in Retinal Ganglion Cells is Modulated by the Complexity of the Visual Stimulus

Ravello, C.; Perrinet, L. U.; Escobar, M.-J.; Palacios, A. G.

10.1101/350330 — neuroscience — Posted on 2018-06-19

989 Development of white matter fibre density and morphology over childhood: a longitudinal fixel-based analysis

Genc, S.; Smith, R. E.; Malpas, C. B.; Anderson, V.; Nicholson, J. M.; Efron, D.; Sciberras, E.; Seal, M.; Silk, T. J.

10.1101/342097 — neuroscience — Posted on 2018-06-19

990 Reconstructing intelligible speech from the human auditory cortex

Akbari, H.; Khalighinejad, B.; Herrero, J.; Mehta, A.; Mesgarani, N.

10.1101/350124 — neuroscience — Posted on 2018-06-19

991 Hydroxytyrosol (HT) analogues act as potent antifungals by direct disruption of the fungal cell membrane

Diallinas, G.; Rafailidou, N.; Kalpaktsi, I.; Komianou, A. C.; Tsouvali, V.; Zantza, I.; Mikros, E.; Skaltsounis, A. L.; Kostakis, I.

10.1101/350025 — microbiology — Posted on 2018-06-19

992 Coordinated host-pathogen transcriptional dynamics revealed using sorted subpopulations and single, Candida albicans infected macrophages

Munoz, J. F.; Delorey, T.; Ford, C. B.; Li, B. Y.; Thompson, D. A.; Rao, R. P.; Cuomo, C.

10.1101/350322 — genomics — Posted on 2018-06-19

993 A high-quality grapevine downy mildew genome assembly reveals rapidly evolving and lineage-specific putative host adaptation genes

Dussert, Y.; Mazet, I. D.; Couture, C.; Gouzy, J.; Piron, M.-C.; Rispe, C.; Mestre, P.; Delmotte, F.

10.1101/350041 — genomics — Posted on 2018-06-19

994 FunSPU: a versatile and adaptive multiple functional annotation-based association test of whole-genome sequencing data

Ma, Y.; Wei, P.

10.1101/350355 — genetics — Posted on 2018-06-19

995 Human primary motor cortex represents evidence for a perceptual decision before motor response

Bitzer, S.; Park, H.; Maess, B.; von Kriegstein, K.; Kiebel, S.

10.1101/350876 — neuroscience — Posted on 2018-06-19

996 Shared gene co-expression networks in autism from induced pluripotent stem cell (iPSC) neurons

Adhya, D.; Swarup, V.; Nowosaid, P.; Shum, C.; Jozwik, K.; McAlonan, G.; Mendez, M. A.; Horder, J.; Murphy, D.; Geschwind, D. H.; Price, J.; Carroll, J.; Srivastava, D. P.; Baron-Cohen, S.

10.1101/349415 — neuroscience — Posted on 2018-06-19

997 Neuropathological correlates and genetic architecture of microglial activation in elderly human brain

Felsky, D.; Roostaei, T.; Nho, K.; Risacher, S. L.; Bradshaw, E. M.; Petyuk, V.; Schneider, J. A.; Saykin, A.; Bennett, D. A.; De Jager, P. L.

10.1101/350389 — genomics — Posted on 2018-06-19

998 Mutations in Kinesin Family Member 6 Reveal Specific Role in Ependymal Cell Function and Human Neuro-Cranial Development

Konjikusic, M. J.; Yeetong, P.; Ittiwut, R.; Suphapeetiporn, K.; Wallingford, J. B.; Gurnett, C. A.; Shotelersuk, V.; Gray, R.

10.1101/350140 — genetics — Posted on 2018-06-19

999 Aberrant DEGS1 sphingolipid metabolism impairs central and peripheral nervous system function in humans

Karsai, G.; Kraft, F.; Haag, N.; Korenke, G. C.; Haenisch, B.; Suriyanarayanan, S.; Steiner, R.; Knopp, C.; Mull, M.; Bergmann, M.; Schoeder, J. M.; Weis, J.; Elbracht, M.; Begemann, M.; Hornemann, T.; Kurth, I.

10.1101/347591 — genetics — Posted on 2018-06-19

1000 Cytoskeletal mechanisms of axonal contractility

Mutalik, S. P.; Joseph, J.; Pullarkat, P. A.; Ghose, A.

10.1101/227777 — biophysics — Posted on 2018-06-19

1001 Two new plasmid post-segregational killing mechanisms for the implementation of synthetic gene networks in E. coli

Fedorec, A. J. H.; Ozdemir, T.; Doshi, A.; Rosa, L.; Velazquez, O.; Danino, T.; Barnes, C. P.

10.1101/350744 — synthetic biology — Posted on 2018-06-19

1002 Acute inflammation sensitizes knee-innervating sensory neurons and decreases mouse digging behavior in a TRPV1-dependent manner.

Chakrabarti, S.; Pattison, L. A.; Singhal, K.; Hockley, J. R.; Callejo, G.; Smith, E. S. J.

10.1101/350637 — neuroscience — Posted on 2018-06-19

1003 Objective Classification of Neocortical Pyramidal Cells

Kanari, L.; Ramaswamy, S.; Shi, Y.; Morand, S.; Meystre, J.; Perin, R.; Abdellah, M.; Wang, Y.; Hess, K.; Markram, H.

10.1101/349977 — neuroscience — Posted on 2018-06-19

1004 Determining the Hierarchical Architecture of the Human Brain Using Subject-Level Clustering of Functional Networks

Akiki, T. J.; Abdallah, C. G.

10.1101/350462 — neuroscience — Posted on 2018-06-19

1005 Free-living Bacterial Communities Are Mostly Dominated by Oligotrophs

Gao, Y.; Wu, M.

10.1101/350348 — microbiology — Posted on 2018-06-19

1006 SpoT and GppA hydrolases prevent the gratuitous activation of RelA by pppGpp in Escherichia coli

Harinarayanan, R.; Sanyal, R.

10.1101/350843 — microbiology — Posted on 2018-06-19

1007 Transcriptome Profiling Reveals Inhibitory Effect of Down-regulated ZBTB38 gene on the Transcriptional Regulation of Tumor Cells Proliferation

Chen, J.; Xing, C.; Wang, H.; Zhang, Z.; Yu, D.; Li, J.; Li, H.; Li, J.; Cai, Y.

10.1101/350223 — genomics — Posted on 2018-06-19

1008 Canine transmissible venereal tumor genome reveals ancient introgression from coyotes to arctic sled dogs

Wang, X.; Zhou, B.-W.; Yin, T.-T.; Chen, F.-L.; Esmailizadeh, A.; Turner, M. M.; Poyarkov, A. D.; Savolainen, P.; Wang, G.-D.; Fu, Q.; Zhang, Y.-P.

10.1101/350512 — evolutionary biology — Posted on 2018-06-19

1009 Bayesian tip dating reveals heterogeneous morphological clocks in Mesozoic birds

Zhang, C.; Wang, M.

10.1101/350496 — evolutionary biology — Posted on 2018-06-19

1010 The intrinsic predictability of ecological time series and its potential to guide forecasting

Pennekamp, F.; Iles, A.; Garland, J.; Brennan, G.; Brose, U.; Gaedke, U.; Jacob, U.; Kratina, P.; Matthews, B.; Munch, S.; Novak, M.; Palamara, G. M.; Rall, B.; Rosenbaum, B.; Tabi, A.; Ward, C.; Williams, R.; Ye, H.; Petchey, O.

10.1101/350017 — ecology — Posted on 2018-06-19

1011 17-(Allylamino)-17demethoxygeldanamycin reduces Endoplasmic Reticulum (ER) stress-induced mitochondrial dysfunction in C2C12 myotubes

Lightfoot, A. P.; Morgan, R. S.; Parkes, J. E.; Thoma, A.; Iwanejko, L. A.; Cooper, R. G.

10.1101/350702 — cell biology — Posted on 2018-06-19

1012 Targeting integrin alpha5 receptor in pancreatic stellate cells to diminish tumor-promoting effects in pancreatic cancer

Kuninty, P.; Bansal, R.; De Geus, S.; Schnittert, J.; van Baarlen, J.; Storm, G.; Bijlsma, M.; van Laarhoven, H.; Kuppen, P.; Vahrmeijer, A.; Ostman, A.; Sier, C.; Prakash, J.

10.1101/350678 — cancer biology — Posted on 2018-06-19

1013 Tv2483, a lipoprotein from Treponema vincentii and homolog of Tp0309 from T. pallidum, is ahighly selective L-arginine-binding protein

Deka, R.; Liu, W.; Tso, S.-C.; Norgard, M.; Brautigam, C.

10.1101/350942 — biophysics — Posted on 2018-06-19

1014 EECoG-Comp: An Open Source Platform for Concurrent EEG/ECoG Comparisons

Wang, Q.; Valdes-Hernandez, P. A.; Bosch-Bayard, J.; Oosugi, N.; Komatsu, M.; Fujii, N.; Valdes-Sosa, P. A.

10.1101/350199 — bioinformatics — Posted on 2018-06-19

1015 Exploration in the Presence of Mother in Typically and Non-Typically Developing Pre-Walking Human Infants

Frostig, T.; Alonim, H.; Scheingesicht, G.; Benjamini, Y.; Golani, I.

10.1101/350736 — neuroscience — Posted on 2018-06-19

1016 Empowering conservation practice with efficient and economical genotyping from poor quality samples

Natesh, M.; Taylor, R.; Truelove, N.; Hadly, E.; Palumbi, S.; Ramakrishnan, U.; Petrov, D.

10.1101/349472 — genomics — Posted on 2018-06-19

1017 HaploBlocker: Creation of subgroup specific haplotype blocks and libraries

Pook, T.; Schlather, M.; de los Campos, G.; Schoen, C. C.; Simianer, H.

10.1101/339788 — genetics — Posted on 2018-06-19

1018 MGDrivE: A modular simulation framework for the spread of gene drives through spatially-explicit mosquito populations

Sanchez C., H. M.; Wu, S. L.; Bennett, J. B.; Marshall, J. M.

10.1101/350488 — genetics — Posted on 2018-06-19

1019 Recapture rates and habitat associations of White-faced Darter Leucorhinnia dubia on Fenn’s and Whixall Moss, Shropshire, UK

Davies, R.; von Hardenberg, A.; Geary, M.

10.1101/349936 — ecology — Posted on 2018-06-19

1020 Single-cell ID-seq identifies BMP signaling as a driver of a late stage epidermal differentiation program.

van Eijl, R. E.; van Buggenum, J. A. G.; Tanis, S. E. J.; Hendriks, J.; Mulder, K. W.

10.1101/350850 — developmental biology — Posted on 2018-06-19

1021 Accurate protein-folding transition-path statistics from a simple free-energy landscape

Jacobs, W. M.; Shakhnovich, E. I.

10.1101/350298 — biophysics — Posted on 2018-06-19

1022 Two-step binding kinetics of tRNAGly by the glyQS T-box riboswitch and its regulation by T-box structural elements

Zhang, J.; Chetnani, B.; Cormack, E. D.; Liu, W.; Mondragon, A.; Fei, J.

10.1101/350413 — biophysics — Posted on 2018-06-19

1023 The Histone H3-H4 Tetramer is a Copper Reductase Enzyme

Attar, N.; Campos, O. A.; Vogelauer, M.; Xue, Y.; Schmollinger, S.; Mallipeddi, N. V.; Cheng, C.; Yen, L.; Yang, S.; Zikovich, S.; Dardine, J.; Carey, M. F.; Merchant, S. S.; Kurdistani, S. K.

10.1101/350652 — molecular biology — Posted on 2018-06-19

1024 Gut microbiome recovery after antibiotic usage is mediated by specific bacterial species

Nandi, T.; Lee, I. R.; Ghosh, T.; Ng, A. H. Q.; Chng, K. R.; Li, C.; Tan, Y. H.; Lye, D.; Barkham, T.; Chen, S.; Gan, Y.-H.; Young, B.; Nagarajan, N.

10.1101/350470 — genomics — Posted on 2018-06-19

1025 Single cell RNAseq provides a molecular and cellular cartography of changes to the human endometrium through the menstrual cycle

Wang, W.; Vilella, F.; Moreno, I.; Pan, W.; Simon, C.; Quake, S. R.

10.1101/350538 — genomics — Posted on 2018-06-19

1026 More than 16,000 effectors in the Legionella genus genome provide multiple, independent combinations for replication in human cells

Gomez-Valero, L.; Rusniok, C.; Carson, D.; Mondino, S.; Perez-Cobas, A. E.; Rolando, M.; Pasricha, S.; Reuter, S.; Demirtas, J.; Crumbach, J.; Descorps-Declere, S.; Hartland, E. L.; Jarraud, S.; Dougan, G.; Schroeder, G. N.; Frankel, G.; Buchrieser, C.

10.1101/350777 — genomics — Posted on 2018-06-19

1027 Genetic Architecture of Collective Behaviors in Zebrafish

Tang, W.; Zhang, G.; Serluca, F.; Li, J.; Xiong, X.; Coble, M.; Tsai, T.; Li, Z.; Molind, G.; Zhu, P.; Fishman, M. C.

10.1101/350314 — animal behavior and cognition — Posted on 2018-06-19

1028 Childhood cerebellar tumors mirror conserved fetal transcriptional programs

Vladoiu, M. C.; El-Hamamy, I.; Donovan, L. K.; Farooq, H.; Holgado, B. L.; Ramaswamy, V.; Mack, S. C.; Lee, J. J.; Kumar, S.; Przelicki, D.; MichaelRaj, A.; Juraschka, K.; Skowron, P.; Luu, B.; Suzuki, H.; Morrissy, S. A.; Cavalli, F. M.; Garzia, L.; Daniels, C.; Wu, X.; Qazi, M. A.; Singh, S. K.; Chan, J. A.; Marra, M. A.; Malkin, D.; Dirks, P.; Pugh, T.; Notta, F.; Kleinman, C. L.; Joyner, A.; Jabado, N.; Stein, L.; Taylor, M. D.

10.1101/350280 — cancer biology — Posted on 2018-06-19

1029 Genome-wide characterization, evolutionary analysis of WRKY genes in Cucurbitaceae species and assessment of its roles in resisting to powdery mildew disease

Gao, C.; Jiao, Z.; Sun, J.; Wang, C.; Dong, Y.; Xiao, S.; Gao, X.; Cao, Q.; Li, L.; Li, W.

10.1101/350892 — plant biology — Posted on 2018-06-19

1030 Sequence analysis and confirmation of type IV pili-associated proteins PilY1, PilW and PilV in Acidithiobacillus thiooxidans

Garcia-Meza, J. V.; Alfaro-Saldana, E.; Hernandez-Sanchez, A.; Soberano-Patron, A. O.; Astello-Garcia, M.; Mendez-Cabanas, A.

10.1101/350900 — microbiology — Posted on 2018-06-19

1031 Coherent chaos in a recurrent neural network with structured connectivity

Landau, I. D.; Sompolinsky, H.

10.1101/350801 — neuroscience — Posted on 2018-06-19

1032 Single-cell level transcriptome of the maize pathogenic fungi cochliobolus heterostrophus race O in infection reveal the virulence related genes, and potential circRNA effector

Chen, J.; wang, m.; wang, s.; sun, j.; li, y.; dou, k.; lu, z.

10.1101/350785 — microbiology — Posted on 2018-06-19

1033 A new cancer-testis long noncoding RNA, the OTP-AS1 RNA

Karnaukhova, I. K.; Polev, D. E.; Krukovskaya, L. L.; Masharsky, A. E.; Nazarenko, O. V.; Makashov, A. A.; Kozlov, A. P.

10.1101/350793 — genetics — Posted on 2018-06-19

1034 Spatiotemporal Gene Coexpression and Regulation in Mouse Cardiomyocytes of Early Cardiac Morphogenesis

Liu, Y.; Lu, P.; Wang, Y.; Morrow, B. E.; Zhou, B.; Zheng, D.

10.1101/349993 — genetics — Posted on 2018-06-19

1035 Size control of the inner ear via hydraulic feedback

Mosaliganti, K. R.; Swinburne, I. A.; Chan, C. U.; Obholzer, N. D.; Green, A. A.; Tanksale, S.; Mahadevan, L.; Megason, S. G.

10.1101/349381 — developmental biology — Posted on 2018-06-19

1036 Transcription initiation defines kinetoplast RNA boundaries

Sement, F. M.; Suematsu, T.; Liye Zhang, L.; Yu, T.; Huang, L.; Aphasizheva, I.; Aphasizhev, R.

10.1101/350256 — biochemistry — Posted on 2018-06-19

1037 Ligand Modulates Cross-Coupling between Riboswitch Folding and Transcriptional Pausing

Widom, J. R.; Nedialkov, Y. A.; Rai, V.; Hayes, R.; Brooks, C. L.; Artsimovitch, I.; Walter, N. G.

10.1101/350447 — biophysics — Posted on 2018-06-19

1038 Deep profiling of mouse splenic architecture with CODEX multiplexed imaging.

Goltsev, Y.; Samusik, N.; Kennedy-Darling, J.; Bhate, S.; Hale, M.; Vazquez, G.; Black, S.; Nolan, G.

10.1101/203166 — systems biology — Posted on 2018-06-18

1039 The Folding Pathway of an Ig Domain is Conserved On and Off the Ribosome

Tian, P.; Steward, A.; Kudva, R.; Su, T.; Shilling, P. J.; Nickson, A. A.; Hollins, J. J.; Beckmann, R.; Von Heijne, G.; Clarke, J.; Best, R.

10.1101/253013 — biophysics — Posted on 2018-06-18

1040 Live Mouse Tracker: real-time behavioral analysis of groups of mice

de Chaumont, F.; Ey, E.; Torquet, N.; Lagache, T.; Dallongeville, S.; Imbert, A.; Legou, T.; Le Sourd, A.-M.; Faure, P.; Bourgeron, T.; Olivo-Marin, J.-C.

10.1101/345132 — animal behavior and cognition — Posted on 2018-06-18

1041 RAB-5 regulates regenerative axonal fusion by controlling EFF-1 endocytosis

Linton, C.; Neumann, B.; Giordano-Santini, R.; Hilliard, M. A.

10.1101/339150 — neuroscience — Posted on 2018-06-18

1042 LADL: Light-activated dynamic looping for endogenous gene expression control

Rege, M.; Kim, J. H.; Valeri, J.; Dunagin, M.; Metzger, A.; Gong, W.; Beagan, J.; Raj, A.; Phillips-Cremins, J. E.

10.1101/349340 — genomics — Posted on 2018-06-18

1043 OptoGranules reveal the evolution of stress granules to ALS-FTD pathology

Zhang, P.; Fan, B.; Yang, P.; Temirov, J.; Messing, J.; Kim, H. J.; Taylor, J. P.

10.1101/348870 — neuroscience — Posted on 2018-06-18

1044 Extreme Amyloid Polymorphism in Staphylococcus aureus Virulent PSMα Peptides

Salinas, N.; Colletier, J.-P.; Moshe, A.; Landau, M.

10.1101/309062 — biochemistry — Posted on 2018-06-18

1045 Metabolic Diversity within the Globally Abundant Marine Group II Euryarchaea Drives Ecological Patterns

Tully, B. J.

10.1101/349548 — microbiology — Posted on 2018-06-18

1046 Re-identification of genomic data using long range familial searches

Erlich, Y.; Shor, T.; Carmi, S.; Pe'er, I.

10.1101/350231 — genomics — Posted on 2018-06-18

1047 Which results of the standard test in community weighted mean approach are too optimistic?

Zeleny, D.

10.1101/349589 — ecology — Posted on 2018-06-18

1048 On the Orientation of Entorhinal Grids

Lebedev, M. A.; Ossadtchi, A.

10.1101/349373 — neuroscience — Posted on 2018-06-18

1049 Highly accelerated rates of heritable large-scale mutations under prolonged exposure to a metal mixture of copper and nickel

Chain, F.; Flynn, J.; Bull, J.; Cristescu, M.

10.1101/349563 — genomics — Posted on 2018-06-18

1050 Parameter inference with analytical propagators for stochastic models of autoregulated gene expression

Veerman, F.; Popovic, N.; Marr, C.

10.1101/349431 — cell biology — Posted on 2018-06-18

1051 Genome-scale metabolic reconstruction and metabolic versatility of an obligate methanotroph Methylococcus capsulatus str. Bath

Gupta, A.; Ahmad, A.; Chothwe, D.; Madhu, M. K.; Srivastava, S.; Sharma, V.

10.1101/349191 — bioengineering — Posted on 2018-06-18

1052 Sources of suboptimality in a minimalistic explore-exploit task

Song, M.; Bnaya, Z.; Ma, W. J.

10.1101/348474 — neuroscience — Posted on 2018-06-18

1053 Cell type specific control of basolateral amygdala plasticity via feedforward inhibition

Guthman, E. M.; Ma, M.; Chu, P.; Baca, S. M.; Restrepo, D.; Huntsman, M. M.

10.1101/348524 — neuroscience — Posted on 2018-06-18

1054 Across-subject offline decoding of motor imagery from MEG and EEG

Halme, H.-L.; Parkkonen, L.

10.1101/349225 — neuroscience — Posted on 2018-06-18

1055 Modulatory effects of dynamic fMRI-based neurofeedback on emotion regulation networks during adolescence

Zich, C.; Haller, S. P. W.; Luehrs, M.; Lisk, S.; Lau, J. Y. F.; Cohen Kadosh, K.

10.1101/347971 — neuroscience — Posted on 2018-06-18

1056 Substrate-dependent cluster density dynamics in bacterial phosphotransferase system permeases

Benevides Martins, G.; Giacomelli, G.; Bramkamp, M.

10.1101/349514 — microbiology — Posted on 2018-06-18

1057 Environmentally mediated reproductive success predicts breeding dispersal decisions in an early successional amphibian

Boualit, L.; Pichenot, J.; Besnard, A.; Helder, R.; Joly, P.; Cayuela, H.

10.1101/349621 — ecology — Posted on 2018-06-18

1058 Allostery and cooperativity in multimeric proteins: bond-to-bond propensities in ATCase

Hodges, M.; Barahona, M.; Yaliraki, S.

10.1101/350173 — biophysics — Posted on 2018-06-18

1059 AccuNGS: a sequencing protocol for detection of ultra-rare variants reveals extensive variation in HIV during first days of infection

Gelbart, M.; Harari, S.; Ben-Ari, Y.; Kustin, T.; Meir, M.; Miller, D.; Mor, O.; Stern, A.

10.1101/349498 — bioinformatics — Posted on 2018-06-18

1060 Predicting peptide presentation by major histocompatibility complex class I using one million peptides

Boehm, K. M.; Bhinder, B.; Raja, V. J.; Dephoure, N.; Elemento, O.

10.1101/349282 — bioinformatics — Posted on 2018-06-18

1061 Evaluating Plastic Deformation and Damage as Potential Mechanisms for Tendon Inelasticity using a Reactive Modeling Framework

Safa, B. N.; Lee, A. H.; Santare, M. H.; Elliott, D. M.

10.1101/349530 — bioengineering — Posted on 2018-06-18

1062 Structure-based redesign of docking domain interactions modulates the product spectrum of a rhabdopeptide-synthesizing NRPS

Hacker, C.; Cai, X.; Kegler, C.; Zhao, L.; Weickhmann, K.; Bode, H. B.; Woehnert, J.

10.1101/349555 — biochemistry — Posted on 2018-06-18

1063 A Network of Networks Approach for Modeling Interconnected Brain Tissue-Specific Networks

Kawakubo, H.; Matsui, Y.; Kushima, I.; Ozaki, N.; Shimamura, T.

10.1101/349969 — systems biology — Posted on 2018-06-18

1064 CFTR misfolds during native-centric simulations due to entropic penalties of native state formation

Shi, J.; Cleveland, T.; Powe, A. C.; McGaughey, G.; Pande, V.

10.1101/350074 — molecular biology — Posted on 2018-06-18

1065 Systems genetic discovery of host-microbiome interactions reveals mechanisms of microbial involvement in disease

Bubier, J.; Philip, V.; Quince, C.; Campbell, J.; Zhou, Y.; Vishnivetskaya, T.; Duvvuru, S.; Hageman Blair, R.; Ndukum, J.; Donohue, K. D.; Phillips, C.; Foster, C.; Mellert, D.; Weinstock, G.; Culiat, C. T.; Baker, E. J.; Langston, M. A.; O'Hara, B.; Palumbo, A. V.; Podar, M.; Chesler, E. J.

10.1101/349605 — genetics — Posted on 2018-06-18

1066 Toads and roads: transport infrastructure severely impacts dispersal regardless of life stage

Cayuela, H.; Bonnaire, E.; Besnard, A.

10.1101/349639 — ecology — Posted on 2018-06-18

1067 Characterization and automatic classification of preterm and term uterine records

Jager, F.; Libensek, S.; Gersak, K.

10.1101/349266 — bioinformatics — Posted on 2018-06-18

1068 Machine learning approach to identify resting-state functional connectivity pattern serving as an endophenotype of autism spectrum disorder

Yamagata, B.; Itahashi, T.; Fujino, J.; Ohta, H.; Nakamura, M.; Kato, N.; Mimura, M.; Hashimoto, R.-i.; Aoki, Y.

10.1101/348599 — neuroscience — Posted on 2018-06-18

1069 Evaluating fMRI-Based Estimation of Eye Movement during Naturalistic Viewing

Son, J.; Ai, L.; Xu, T.; Colcombe, S.; LaConte, S.; Lisinski, J.; Klein, A.; Craddock, C.; Milham, M.

10.1101/347765 — neuroscience — Posted on 2018-06-18

1070 High sensitivity mapping of cortical dopamine D2 receptor expressing neurons

Khlghatyan, J.; Quintana, C.; Parent, M.; Beaulieu, J.-M.

10.1101/349100 — neuroscience — Posted on 2018-06-18

1071 LADL: Light-activated dynamic looping for endogenous gene expression control

Rege, M.; Kim, J. H.; Valeri, J.; Dunagin, M.; Metzger, A.; Gong, W.; Beagan, J.; Raj, A.; Phillips-Cremins, J. E.

10.1101/349340 — molecular biology — Posted on 2018-06-18

1072 A comprehensive mycofloral diversity of pedosphere, phyllosphere and aerosphere of Som. (Persea bombycina Kost.)

Das, S.; Mishra, P. K.; Das, S.

10.1101/349167 — microbiology — Posted on 2018-06-18

1073 Emergent populations derived with unsupervised learning of human whole genomes

Njie, e. G.

10.1101/329789 — genomics — Posted on 2018-06-18

1074 Low-frequency variation in TP53 has large effects on head circumference and intracranial volume

Haworth, S.; Shapland, C. Y.; Hayward, C.; Prins, B. P.; Felix, J. F.; Medina-Gomez, C.; Rivadeneira, F.; Wang, C.; Ahluwalia, T. S.; Vrijheid, M.; Guxens, M.; Sunyer, J.; Tachmazidou, I.; Walter, K.; Iotchkova, V.; Jackson, A.; Cleal, L.; Huffmann, J.; Min, J. L.; Sass, L.; Timmers, P. R. H. J.; UK10K consortium, ; Davey Smith, G.; Fisher, S. E.; Wilson, J. F.; Cole, T. J.; Fernandez-Orth, D.; Bonnelykke, K.; Bisgaard, H.; Pennell, C. E.; Jaddoe, V. W. V.; Dedoussis, G.; Timpson, N. J.; Zeggini, E.; Vitart, V.; St Pourcain, B.

10.1101/349845 — genetics — Posted on 2018-06-18

1075 The immune checkpoint kick start: Optimization of neoadjuvant combination therapy using game theory

West, J.; Robertson-Tessi, M.; Luddy, K.; Park, D. S.; Williamson, D. F. K.; Harmon, C.; Khong, H. T.; Brown, J.; Anderson, A. R. A.

10.1101/349142 — cancer biology — Posted on 2018-06-18

1076 Hyperparameter-free optimizer of gradient-descent method incorporating unit correction and moment estimation

Yamada, K. D.

10.1101/348557 — bioinformatics — Posted on 2018-06-18

1077 Performance benchmarking of GATK3.8 and GATK4

Heldenbrand, J. R.; Baheti, S.; Bockol, M. A.; Drucker, T. M.; Hart, S. N.; Hudson, M. E.; Iyer, R. K.; Kalmbach, M. T.; Klee, E. W.; Wieben, E. D.; Wiepert, M.; Wildman, D. E.; Mainzer, L. S.

10.1101/348565 — bioinformatics — Posted on 2018-06-18

1078 Multiobjective Strain Design: A Framework for Modular Cell Engineering

Garcia, S.; Trinh, C. T.

10.1101/349399 — bioengineering — Posted on 2018-06-18

1079 Commitments by the biopharmaceutical industry to clinical trials transparency: the evolving environment

Baronikova, S.; Purvis, J.; Southam, E.; Beeso, J.; Winchester, C.; Panayi, A.

10.1101/349902 — scientific communication and education — Posted on 2018-06-18

1080 Suppression of drug resistance reveals a genetic mechanism of metabolic plasticity in malaria parasites

Guggisberg, A. M.; Frasse, P. M.; Jezewski, A. J.; Kafai, N. M.; Gandhi, A. Y.; Erlinger, S. J.; Odom John, A. R.

10.1101/155523 — microbiology — Posted on 2018-06-18

1081 Vascular defects of DYRK1A knockouts are ameliorated by modulating calcium signaling in zebrafish

Lee, J.-S.; Cho, H.-J.; Lee, J.-G.; Kim, J.-H.; Kim, S.-Y.; Huh, Y. H.; Kim, H.-J.; Lee, K.-S.; Yu, K.

10.1101/349985 — developmental biology — Posted on 2018-06-18

1082 Characterization of Drosophila Nidogen/entactin reveals roles in basement membrane stability, barrier function and nervous system plasticity

Wolfstetter, G.; Dahlitz, I.; Pfeifer, K.; Alt, J. A.; Toepfer, U.; Pfeifer, D. C.; Lakes-Harlan, R.; Baumgartner, S.; Palmer, R.; Holz, A.

10.1101/348631 — developmental biology — Posted on 2018-06-18

1083 Switchable genome editing via genetic code expansion

Suzuki, T.; Asami, M.; Patel, S. G.; Luk, L. Y. P.; Tsai, Y.-H.; Perry, A. C. F.

10.1101/349951 — developmental biology — Posted on 2018-06-18

1084 Feedback Regulation between Initiation and Maturation Networks Orchestrates the Chromatin Dynamics of Epidermal Lineage Commitment

Li, L.; Wang, Y.; Torkelson, J. L.; Shankar, G.; Pattison, J. M.; Zhen, H. H.; Duren, Z.; Fang, F.; Melo, S. P.; Piekos, S. N.; Li, J.; Liaw, E. J.; Chen, L.; Li, R.; Wernig, M.; Wong, W. H.; Chang, H. Y.; Oro, A. E.

10.1101/349308 — cell biology — Posted on 2018-06-18

1085 High throughput proteomics identifies 484 high-accuracy plasma protein biomarker signatures for ovarian cancer

Enroth, S.; Berggrund, M.; Lycke, M.; Broberg, J.; Lundberg, M.; Assarsson, E.; Olovsson, M.; Stalberg, K.; Sundfeldt, K.; Gyllensten, U.

10.1101/349829 — cancer biology — Posted on 2018-06-18

1086 GIMLET: Identifying Biological Modulators in Context-Specific Gene Regulation Using Local Energy Statistics

Shimamura, T.; Matsui, Y.; Kajino, T.; Ito, S.; Takahashi, T.; Miyano, S.

10.1101/349928 — bioinformatics — Posted on 2018-06-18

1087 Revised testing procedures do not elicit magnetoreceptive behavior in C. elegans

Landler, L.; Nordmann, G.; Nimpf, S.; Hochstoeger, T.; Kagerbauer, D.; Keays, D.

10.1101/349944 — animal behavior and cognition — Posted on 2018-06-18

1088 Look before you jump: jumping spiders discriminate different ants by visual cues

Vijayan, S.; Casiker, C.; Uma, D.

10.1101/349696 — animal behavior and cognition — Posted on 2018-06-18

1089 The role of matrilineality in shaping patterns of Y chromosome and mtDNA sequence variation in southwestern Angola

Oliveira, S.; Hübner, A.; Fehn, A.-M.; Aco, T.; Lages, F.; Pakendorf, B.; Stoneking, M.; Rocha, J.

10.1101/349878 — genetics — Posted on 2018-06-18

1090 Chirality provides a direct fitness advantage and facilitates intermixing in cellular aggregates

B. George, A.; S. Korolev, K.

10.1101/349670 — evolutionary biology — Posted on 2018-06-18

1091 Transcriptomic atlas of mushroom development highlights an independent origin of complex multicellularity

Krizsan, K.; Almasi, E.; Merenyi, Z.; Sahu, N.; Viragh, M.; Koszo, T.; Mondo, S.; Kiss, B.; Balint, B.; Kues, U.; Barry, K.; Cseklye, J.; Hegedus, B.; Henrissat, B.; Johnson, J.; Lipzen, A.; Ohm, R. A.; Nagy, I.; Pangilinan, J.; Yan, J.; Xiong, Y.; Grigoriev, I. V.; Hibbett, D. S.; Nagy, L. G.

10.1101/349894 — evolutionary biology — Posted on 2018-06-18

1092 diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering

Weber, L. M.; Nowicka, M.; Soneson, C.; Robinson, M. D.

10.1101/349738 — bioinformatics — Posted on 2018-06-18

1093 Z-score to evaluate the absolute quality of macromolecular models based on SAXS data

Guzenko, D.; Strelkov, S. V.

10.1101/349704 — bioinformatics — Posted on 2018-06-18

1094 A data-driven interactome of synergistic genes improves network based cancer outcome prediction

Allahyar, A.; de Ridder, J.; Ubels, J.

10.1101/349688 — bioinformatics — Posted on 2018-06-18

1095 Associations between Afrotropical bats, parasites, and microbial symbionts

Lutz, H. L.; Jackson, E. W.; Dick, C.; Webala, P. W.; Babyesiza, W. S.; Kerbis Peterhans, J. C.; Demos, T. C.; Patterson, B. D.; Gilbert, J. A.

10.1101/340109 — ecology — Posted on 2018-06-18

1096 Causal inference for spatial constancy across whole-body motion

Perdreau, F.; Cooke, J. R. H.; Koppen, M.; Medendorp, P. W.

10.1101/350066 — neuroscience — Posted on 2018-06-18

1097 Benchmark and integration of resources for the estimation of human transcription factor activities

Garcia-Alonso, L.; Ibrahim, M. M.; Turei, D.; Saez-Rodriguez, J.

10.1101/337915 — bioinformatics — Posted on 2018-06-18

1098 Robust Design for Coalescent Model Inference

Parag, K. V.; Pybus, O. G.

10.1101/317438 — bioinformatics — Posted on 2018-06-18

1099 Local-community network automata modelling based on length-three-paths for prediction of complex network structures in protein interactomes, food webs and more

Muscoloni, A.; Abdelhamid, I.; Cannistraci, C. V.

10.1101/346916 — systems biology — Posted on 2018-06-18

1100 An Event-related Potential Comparison of Facial Expression Processing between Cartoon and Real Faces

Zhao, J.; Wang, Y.; An, L.

10.1101/333898 — neuroscience — Posted on 2018-06-18

1101 Influenza A(H1N1)pdm09 M and HA segments sequences from Rio Grande do Sul, Brazil

Matias, F.; kretzmann, N. A.; Bisognin, C.; Teixeira, K.; Trevizan, L.; Vieira, P.; Ikuta, N.; Gregianini, T. S.; Veiga, A. B. G.; d'Azevedo, P.

10.1101/347229 — microbiology — Posted on 2018-06-18

1102 Astroglia withdraw from potentiated synapses boosting inter-synaptic cross-talk

Henneberger, C.; Bard, L.; Panatier, A.; Reynolds, J. P.; Medvidov, N. I.; Minge, D.; Herde, M. K.; Anders, S.; Kraev, I.; Zheng, K.; Jensen, T. P.; Sanchez-Romero, I.; Janovjak, H.; Ottersen, O.-P.; Nagelhus, E.-A.; Oliet, S. H. R.; Stewart, M. G.; Nagerl, U. V.; Rusakov, D. A.

10.1101/349233 — neuroscience — Posted on 2018-06-18

1103 Turning vice into virtue: Using Batch-Effects to Detect Errors in Large Genomic Datasets

Mafessoni, F.; Prasad B, R.; Groop, L.; Hansson, O.; Pruefer, K.

10.1101/189670 — genomics — Posted on 2018-06-18

1104 The Role of Sensory Uncertainty in Simple Perceptual Organization

Zhou, Y.; Acerbi, L.; Ma, W. J.

10.1101/350082 — neuroscience — Posted on 2018-06-18

1105 Identification of anti-norovirus genes in mouse and human cells using genome-wide CRISPR activation screening

Orchard, R.; Sullender, M. E.; Dunlap, B. F.; Balce, D. R.; Doench, J. G.; Virgin, H. W.

10.1101/350090 — microbiology — Posted on 2018-06-18

1106 Plasmodium male gametocyte development and transmission are critically regulated by general and transmission-specific members of the CAF1/CCR4/NOT complex

Hart, K. J.; Oberstaller, J.; Walker, M. P.; Minns, A. M.; Kennedy, M. F.; Padykula, I.; Adams, J.; Lindner, S. E.

10.1101/350116 — microbiology — Posted on 2018-06-18

1107 Causal inference for spatial constancy across whole-body motion

Perdreau, F.; Cooke, J. R. H.; Koppen, M.; Medendorp, P. W.

10.1101/350066 — neuroscience — Posted on 2018-06-18

1108 The acidic domain of the hepatitis C virus NS4A protein is required for viral assembly and envelopment through interactions with the viral E1 glycoprotein

Roder, A. E.; Horner, S. M.

10.1101/350132 — microbiology — Posted on 2018-06-18

1109 Low spatial structure and selection against secreted virulence factors attenuates pathogenicity in Pseudomonas aeruginosa

Granato, E. T.; Ziegenhain, C.; Marvig, R. L.; Kümmerli, R.

10.1101/250845 — microbiology — Posted on 2018-06-18

1110 Colonic Epithelial miR-31 Associates with the Development of Crohn’s Phenotypes

Keith, B. P.; Barrow, J. B.; Kazgan, N.; Shah, N. D.; Gipson, G. R.; Pitman, W. A.; Saxena, S. J.; Wolber, E. A.; Schaner, M. S.; Hoffner O'Connor, M.; Tradd, O. K.; Kanke, M.; Toyonaga, T.; Chaumont, N.; Sadiq, T. S.; Koruda, M. J.; Cotney, P. A.; Allbritton, N.; Trembath, D. G.; Sylvester, F.; Furey, T. S.; Sethupathy, P.; Sheikh, S. Z.

10.1101/307561 — genomics — Posted on 2018-06-18

1111 Computational complexity is an ultimate constraint on evolution

Kaznatcheev, A.

10.1101/187682 — evolutionary biology — Posted on 2018-06-18

1112 Effects of planting density on the growth and photosynthetic characteristics of Alternanthera philoxeroides under different nutrient conditions

Li, K.; Chen, H.; Zhang, H.; Huang, M.; Quan, Q.; Wang, T.; Liu, J.

10.1101/349860 — plant biology — Posted on 2018-06-18

1113 Feasibility of constructing multi-dimensional genomic maps of juvenile idiopathic arthritis

Jarvis, J. N.; Zhu, L.; Jiang, K.; Wong, L.; Buck, M. J.; Chen, Y.; Moncrief, H.; Macintosh, L. A.; Liu, T.; Sing, X.; Li, D.; Wang, T.; O'Neil, K. M.

10.1101/349811 — genomics — Posted on 2018-06-18

1114 When an insecticide affects the adaptive value of Intraguild predation by an invader

Cabrera, P.; Cormier, D.; Bessette, M.; Cruz, V.; Lucas, E.

10.1101/349852 — ecology — Posted on 2018-06-18

1115 Eldecalcitol is more effective for promoting osteogenesis than alfacalcidol in Cyp27b1-knockout Mice

Hirota, Y.; Nakagawa, K.; Isomoto, K.; Sakaki, T.; Kubodera, N.; Kamao, M.; Osakabe, N.; Suhara, Y.; Okano, T.

10.1101/349837 — biochemistry — Posted on 2018-06-18

1116 Effects of host species and environmental factors on the prevalence of Batrachochytrium dendrobatidis in northern Europe

Kärvemo, S.; Meurling, S.; Berger, D.; Höglund, J.; Laurila, A.

10.1101/349787 — ecology — Posted on 2018-06-18

1117 High-sensitivity c-reactive protein and total and saturated fat intake in adolescent students: a longitudinal study

Martins, C.; Emilia Leite de Lima Ferreira, F.; Cavalcante de Almeida, A. T.; No,

10.1101/349761 — epidemiology — Posted on 2018-06-18

1118 Spatiotemporal Dynamics of Reward and Punishment Effects Induced by Associative Learning

Wang, H.; Kleffner, K.; Carolan, P. L.; Liotti, M.

10.1101/349712 — neuroscience — Posted on 2018-06-18

1119 Environmental and Socioeconomic Factors Associated with West Nile Virus

Joyce, A. L.; Hernandez, E.; Torres, R.

10.1101/349720 — epidemiology — Posted on 2018-06-18

1120 The Gut-Associated Microbiome of the Eastern Spruce Budworm Does Not Influence Larval Growth or Survival

Schwarz, M. T.; Kneeshaw, D.; Kembel, S. W.

10.1101/330928 — microbiology — Posted on 2018-06-17

1121 Cortical state fluctuations during sensory decision making

Jacobs, E. A. K.; Steinmetz, N. A.; Carandini, M.; Harris, K. D.

10.1101/348193 — neuroscience — Posted on 2018-06-17

1122 Astroglia withdraw from potentiated synapses boosting inter-synaptic cross-talk

Henneberger, C.; Bard, L.; Panatier, A.; Reynolds, J.; Medvidov, N. I.; Minge, D.; Herde, M. K.; Anders, S.; Kraev, I.; Zheng, K.; Jensen, T. P.; Sanchez-Romero, I.; Janovjak, H.; Ottersen, O.-P.; Nagelhus, E.-A.; Oliet, S. H. R.; Stewart, M. G.; Nagerl, U. V.; Rusakov, D. A.

10.1101/349233 — neuroscience — Posted on 2018-06-17

1123 GABARAP Like-1 enrichment on membranes: Direct observation of trans-homo-oligomerization between membranes and curvature-dependent partitioning into membrane tubules.

Motta, I.; Nguyen, N.; Gardavot, H.; Richerson, D.; Pincet, F.; Melia, T.

10.1101/348730 — biophysics — Posted on 2018-06-17

1124 Getting more from heterogeneous HIV-1 surveillance data in a high immigration country: estimation of incidence and undiagnosed population size using multiple biomarkers

Giardina, F.; Romero-Severson, E.; Axelsson, M.; Svedhem, V.; Leitner, T.; Britton, T.; Albert, J.

10.1101/345710 — epidemiology — Posted on 2018-06-17

1125 Statin treatment and the risk of depression

Koehler-Forsberg, O.; Gasse, C.; Petersen, L.; Nierenberg, A.; Mors, O.; Oestergaard, S.

10.1101/349332 — epidemiology — Posted on 2018-06-17

1126 Game theory of vaccination and depopulation for managing avian influenza on poultry farms

Delabouglise, A.; Boni, M. F.

10.1101/348813 — epidemiology — Posted on 2018-06-17

1127 Crohn’s disease patients effectively mobilize peripheral blood stem cells to perform autologous haematopoietic stem cell transplantation

Ruiz, M. A.; Kaiser Junior, R. L.; Piron-Ruiz, L.; Pena Arciniegas, T.; Castiglioni, L.; Saran, P. S.; de Quadros, L. G.; Faria, M. A. G.; Siqueira, R. C.; Kaiser, F. S. L.; Comenalli Marques Junior, J. F.

10.1101/348763 — clinical trials — Posted on 2018-06-17

1128 Cortical state fluctuations during sensory decision making

Jacobs, E. A. K.; Steinmetz, N. A.; Carandini, M.; Harris, K. D.

10.1101/348193 — neuroscience — Posted on 2018-06-17

1129 Genome-wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon.

Bourgeois, Y.; Stritt, C.; Walser, J.-C.; Gordon, S. P.; Vogel, J. P.; Roulin, A. C.

10.1101/246090 — evolutionary biology — Posted on 2018-06-17

1130 Mixing patterns of HIV transmission among men who have sex with men in the United Kingdom

Le Vu, S.; Ratmann, O.; Delpech, V.; Brown, A. E.; Gill, N.; Tostevin, A.; Dunn, D.; Fraser, C.; Volz, E.; UK HIV Drug Resistance Database,

10.1101/342774 — epidemiology — Posted on 2018-06-17

1131 The impact of news exposure on collective attention in the United States during the 2016 Zika epidemic

Tizzoni, M.; Panisson, A.; Paolotti, D.; Cattuto, C.

10.1101/346411 — epidemiology — Posted on 2018-06-17

1132 Systematic biases in disease forecasting - the role of behavior change

Eksin, C.; Paarporn, K.; Weitz, J.

10.1101/349506 — epidemiology — Posted on 2018-06-17

1133 Impact of a ketogenic diet intervention during radiotherapy on body composition: III. An interim analysis of the KETOCOMP study

Klement, R. J.; Schaefer, G.; Sweeney, R. A.

10.1101/343251 — clinical trials — Posted on 2018-06-17

1134 Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562

Zhou, B.; Ho, S. S.; Greer, S. U.; Zhu, X.; Bell, J. M.; Arthur, J. G.; Spies, N.; Zhang, X.; Byeon, S.; Pattni, R.; Ben-Efraim, N.; Haney, M. S.; Haraksingh, R. R.; Ji, H. P.; Song, G.; Perrin, D.; Wong, W. H.; Abyzov, A.; Urban, A. E.

10.1101/192344 — genomics — Posted on 2018-06-17

1135 VGLUT2 functions as a differential marker for hippocampal output neurons

Wozny, C.; Beed, P.; Nitzan, N.; Poessnecker, Y.; Rost, B. R.; Schmitz, D.

10.1101/348227 — neuroscience — Posted on 2018-06-17

1136 Astroglial biophysics probed with a realistic cell model

Savtchenko, L. P.; Bard, L.; Jensen, T. P.; Reynolds, J. P.; Kraev, I.; Medvidov, M.; Stewart, M. G.; Henneberger, C.; Rusakov, D. A.

10.1101/336974 — neuroscience — Posted on 2018-06-17

1137 Multiplexed imaging of single-synapse activity and astroglial responses in the intact brain

Reynolds, J. P.; Zheng, K.; Rusakov, D. A.

10.1101/344713 — neuroscience — Posted on 2018-06-17

1138 Prognostic Relevance of CCDC88C (Daple) Transcripts in the Peripheral Blood of Patients with Malignant Melanoma

Dunkel, Y.; Reid, A.; Ear, J.; Aznar, N.; Millward, M.; Gray, E.; Pearce, R.; Ziman, M.; Ghosh, P.

10.1101/346551 — cancer biology — Posted on 2018-06-17

1139 Identifying Antimicrobial Peptides using Word Embedding with Deep Recurrent Neural Networks

Hamid, M. N.; Friedberg, I.

10.1101/255505 — bioinformatics — Posted on 2018-06-17

1140 Engineered Microbes to Sense and Respond to Enterotoxigenic Escherichia coli

Bete, A.; Carter, J.; Davis, C.; Dong, J.; Herrmann, M.; Jesse, H.; McDonald, D.; Menart, P.; Poole, A.; Smith, A.

10.1101/348573 — synthetic biology — Posted on 2018-06-17

1141 Automethylation of PRC2 fine-tunes its catalytic activity on chromatin

Lee, C.-H.; Granat, J.; Yu, J.-R.; LeRoy, G.; Stafford, J.; Reinberg, D.

10.1101/349449 — biochemistry — Posted on 2018-06-17

1142 Predicting perturbation patterns from the topology of biological networks

Santolini, M.; Barabasi, A.-L.

10.1101/349324 — systems biology — Posted on 2018-06-17

1143 CRISPR-Cas9 ribonucleoprotein-mediated co-editing and counterselection in the rice blast fungus

Foster, A. J.; Martin-Urdiroz, M.; Yan, X.; Wright, S.; Soanes, D. M.; Talbot, N. J.

10.1101/349134 — microbiology — Posted on 2018-06-17

1144 MobiSeq: De Novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements

Rey-Iglesia, A.; Gopalakrishnan, S.; Caroe, C.; Alquezar-Planas, D. E.; Nielsen, A. A.; Röder, T.; Pedersen, L. B.; Naesborg-Nielsen, C.; Sinding, M.-H. S.; Rath, M. F.; Li, Z.; Petersen, B.; Gilbert, M. T. P.; Bunce, M.; Mourier, T.; Hansen, A. J.

10.1101/349290 — genomics — Posted on 2018-06-17

1145 Mechanisms of gene death in the Red Queen race revealed by the analysis of de novo microRNAs

Lu, G.-A.; Zhao, Y.; Lan, A.; Liufu, Z.; Wen, H.; Tang, T.; Xu, J.; Wu, C.-I.

10.1101/349217 — evolutionary biology — Posted on 2018-06-17

1146 Parallel genome-wide CRISPR analysis identifies a role for heterotypic ubiquitin chains in ER-associated degradation

Leto, D. E.; Morgens, D. W.; Zhang, L.; Walczak, C. P.; Elias, J. E.; Bassik, M. C.; Kopito, R. R.

10.1101/349407 — cell biology — Posted on 2018-06-17

1147 SANTA-SIM: Simulating Viral Sequence Evolution Dynamics Under Selection and Recombination

Jariani, A.; Warth, C.; Deforche, K.; Libin, P.; Drummond, A.; Rambaut, A.; Matsen, E. A.; Theys, K.

10.1101/348508 — bioinformatics — Posted on 2018-06-17

1148 DISC1 regulates N-Methyl-D-Aspartate receptor dynamics: Abnormalities induced by a Disc1 mutation modelling a translocation linked to major mental illness

Malavasi, E.; Economides, K.; Grunewald, E.; Makedonopoulou, P.; Gautier, P.; Mackie, S.; Murphy, L.; Murdoch, H.; Crummie, D.; Ogawa, F.; McCartney, D.; O'Sullivan, S.; Burr, K.; Torrance, H.; Phillips, J.; Bonneau, M.; Anderson, S.; Perry, P.; Pearson, M.; Constantinides, C.; Davidson-Smith, H.; Kabiri, M.; Duff, B.; Johnstone, M.; Polites, G.; Lawrie, S.; Blackwood, D.; Semple, C.; Evans, K.; Didier, M.; Chandran, S.; McIntosh, A.; Price, D.; Houslay, M.; Porteous, D.; Millar, K.

10.1101/349365 — neuroscience — Posted on 2018-06-17

1149 Rapid and sensitive virulence prediction and identification of Newcastle disease virus genotypes using third-generation sequencing

Butt, S. L.; Taylor, T. L.; Volkening, J.; Dimitrov, K. M.; Williams-Coplin, D.; Lahmers, K. K.; Rana, A. M.; Suarez, D. L.; Afonso, C. L.; Stanton, J. B.

10.1101/349159 — molecular biology — Posted on 2018-06-17

1150 Oxford Nanopore MinION genome sequencer: performance characteristics, optimised analysis workflow, phylogenetic analysis and prediction of antimicrobial resistance in Neisseria gonorrhoeae

Golparian, D.; Dona, V.; Sanchez-Buso, L.; Foerster, S.; Harris, S.; Endimiani, A.; Low, N.; Unemo, M.

10.1101/349316 — genomics — Posted on 2018-06-17

1151 DGEN: A Test Statistic for Detection of General Introgression Scenarios

Elworth, R.; Allen, C.; Benedict, T.; Dulworth, P.; Nakhleh, L.

10.1101/348649 — evolutionary biology — Posted on 2018-06-17

1152 Inference of species histories in the presence of gene flow

Mueller, N. F.; Ogilvie, H.; Zhang, C.; Drummond, A.; Stadler, T.

10.1101/348391 — evolutionary biology — Posted on 2018-06-17

1153 Characteristic impairments of goal-directed and habitual control in bulimia nervosa

Nunes, A.; Helson, T. J.; Dixon, L. M.; Trappenberg, T.; Keshen, A. R.

10.1101/348250 — neuroscience — Posted on 2018-06-16

1154 Interactions in self-assembled microbial communities saturate with diversity

Yu, X.; Polz, M. F.; Alm, E. J.

10.1101/347948 — ecology — Posted on 2018-06-16

1155 Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images

Caicedo, J. C.; Roth, J.; Goodman, A.; Becker, T.; Karhohs, K. W.; McQuin, C.; Singh, S.; Theis, F.; Carpenter, A. E.

10.1101/335216 — bioinformatics — Posted on 2018-06-16

1156 Weakly supervised classification of rare aortic valve malformations using unlabeled cardiac MRI sequences

Fries, J. A.; Varma, P.; Chen, V. S.; Xiao, K.; Tejeda, H.; Saha, P.; Dunnmon, J.; Chubb, H.; Maskatia, S.; Fiterau, M.; Delp, S.; Ashley, E.; Re, C.; Priest, J.

10.1101/339630 — bioinformatics — Posted on 2018-06-16

1157 Strategic allocation of working memory resource

Yoo, A. H.; Klyszejko, Z.; Curtis, C. E.; Ma, W. J.

10.1101/329870 — neuroscience — Posted on 2018-06-16

1158 Quantifying Selection on Codon Usage in Signal Peptides: Gene Expression and Amino Acid Usage Explain Apparent Selection for Inefficient Codons

Cope, A. L.; Hettich, R. L.; Gilchrist, M. A.

10.1101/347849 — evolutionary biology — Posted on 2018-06-16

1159 Rainbow-seq: combining cell lineage tracking with single-cell RNA sequencing in preimplantation embryos

Biase, F.; Wu, Q.; Calandrelli, R.; Rivas-Astroza, M.; Zhou, S.; Zhong, S.

10.1101/293134 — developmental biology — Posted on 2018-06-16

1160 Combinatorial quorum sensing in Pseudomonas aeruginosa allows for novel cheating strategies

Gurney, J.; Azimi, S.; McNally, A.; Brown, S. P.; Diggle, S. P.

10.1101/313502 — microbiology — Posted on 2018-06-16

1161 Phylogenetic evidence for independent origins of GDF1 and GDF3 genes in amphibians and mammals

Opazo, J. C.; Zavala, K.

10.1101/293522 — evolutionary biology — Posted on 2018-06-16

1162 BisPin and BFAST-Gap: Mapping Bisulfite-Treated Reads

Porter, J.; Zhang, L.

10.1101/284596 — bioinformatics — Posted on 2018-06-16

1163 Neural Signatures of Reward and Sensory Prediction Error in Motor Learning

Palidis, D. J.; Cashaback, J.; Gribble, P.

10.1101/262576 — neuroscience — Posted on 2018-06-16

1164 Enzymatic DNA synthesis for digital information storage

Lee, H. H.; Kalhor, R.; Goela, N.; Bolot, J.; Church, G. M.

10.1101/348987 — synthetic biology — Posted on 2018-06-16

1165 A high-quality, long-read de novo genome assembly to aid conservation of Hawaii’s last remaining crow species

Sutton, J.; Helmkampf, M.; Steiner, C.; Bellinger, M. R.; Korlach, J.; Hall, R.; Baybayan, P.; Muehling, J.; Gu, J.; Kingan, S.; Masuda, B.; Ryder, O.

10.1101/349035 — genomics — Posted on 2018-06-16

1166 Low-dose cadmium potentiates lung inflammatory response to 2009 pandemic H1N1 influenza virus in mice

Chandler, J. D.; Hu, X.; Ko, E.; Park, S.; Fernandes, J.; Lee, Y.-T.; Orr, M.; Hao, L.; Smith, M. R.; Nujahr, D.; Uppal, K.; Kang, S.-M.; Jones, D.; Go, Y.-M.

10.1101/346866 — pharmacology and toxicology — Posted on 2018-06-16

1167 Reliable Multiplex Sequencing with Rare Index Mis-Assignment on DNB-Based NGS Platform

Li, Q.; Zhao, X.; Zhang, W.; Wang, L.; Wang, J.; Xu, D.; Mei, Z.; Liu, Q.; Du, S.; Li, Z.; Liang, X.; Wang, X.; Wei, H.; Liu, P.; Zou, J.; Shen, H.; Chen, A.; Drmanac, S.; Liu, J. S.; Li, L.; Jiang, H.; Zhang, Y.; Wang, J.; Yang, H.; Xu, X.; Drmanac, R.; Jiang, Y.

10.1101/343137 — genomics — Posted on 2018-06-16

1168 Cell Cycle, Energy Metabolism and DNA Repair Pathways in Cancer Cells are Suppressed by Compound Kushen Injection.

Cui, J.; Qu, Z.; Harata-Lee, Y.; Aung, T. N.; Shen, H.; Adelson, D. L.

10.1101/348102 — cancer biology — Posted on 2018-06-16

1169 Methionine coordinates a hierarchically organized anabolic program enabling proliferation.

Walvekar, A.; Srinivasan, R.; Gupta, R.; Laxman, S.

10.1101/249367 — systems biology — Posted on 2018-06-16

1170 Signal sequences in the genome of Mononegavirales regulate the generation of copy-back defective viral genomes

Sun, Y.; Kim, E.; Speranza, E.; Taylor, L.; Agarwal, D.; Gerhardt, D.; Bennett, R.; Connor, J.; Grant, G.; Lopez, C.

10.1101/349001 — microbiology — Posted on 2018-06-16

1171 Guidance on filtering DNA methylation microarray probes by detection p-values

Heiss, J. A.; Just, A. C.

10.1101/245217 — bioinformatics — Posted on 2018-06-16

1172 TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution

Rohwer, R. R.; Hamilton, J. J.; Newton, R. J.; McMahon, K. D.

10.1101/214288 — bioinformatics — Posted on 2018-06-16

Oliynyk, R. T.

10.1101/349019 — genetics — Posted on 2018-06-16

1174 Primary auditory cortex represents the location of sound sources in a cue-invariant manner

Wood, K. C.; Town, S. M.; Bizley, J.

10.1101/348672 — neuroscience — Posted on 2018-06-16

1175 Neural and behavioral endophenotypes of obesity

Neseliler, S.; Vainik, U.; Dadar, M.; Yau, Y. H.; Garcia-Garcia, I.; Scala, S. G.; Zeighami, Y.; Collins, D. L.; Dagher, A.

10.1101/348821 — neuroscience — Posted on 2018-06-16

1176 Prophage induction, but not production of phage particles, is required for lethal disease in a microbiome-replete murine model of enterohemorrhagic E. coli infection

Balasubramanian, S.; Osburne, M. S.; BrinJones, H.; Tai, A. K.; Leong, J. M.

10.1101/348706 — microbiology — Posted on 2018-06-16

1177 C. elegans genetic background modifies the core transcriptional response in an α-synuclein model of Parkinson’s disease

Wang, Y. A.; Snoek, L. B.; Sterken, M. E.; Riksen, J. A.; Stastna, J. J.; Kammenga, J.; Harvey, S. C.

10.1101/348623 — genomics — Posted on 2018-06-16

1178 Morphogen-Lineage Selector Interactions During Surface Epithelial Commitment

Melo, S. P.; Pattison, J. M.; Piekos, S. N.; Torkelson, J. L.; Bashkirova, E.; Mumbach, M. R.; Rajasingh, C.; Zhen, H. H.; Li, L.; Liaw, E.; Alber, D.; Rubin, A. J.; Shankar, G.; Chang, H. Y.; Khavari, P. A.; Oro, A. E.

10.1101/348839 — genetics — Posted on 2018-06-16

1179 Protein nitration is a physiological regulator of cardiac lactate dehydrogenase active site loop mobility and activity

10.1101/348789 — biochemistry — Posted on 2018-06-16

1180 The Goldilocks Effect: Female geladas in mid-sized groups have higher fitness

Tinsley Johnson, E.; Snyder-Mackler, N.; Lu, A.; Bergman, T. J.; Beehner, J. C.

10.1101/348383 — evolutionary biology — Posted on 2018-06-16

1181 The effects of drought and nutrient addition on soil organisms vary across taxonomic groups, but are constant across seasons

Siebert, J.; Suennemann, M.; Auge, H.; Berger, S.; Cesarz, S.; Ciobanu, M.; Eisenhauer, N.

10.1101/348359 — ecology — Posted on 2018-06-16

1182 Palbociclib and fulvestrant act in synergy to modulate central carbon metabolism in breast cancer cells

Warth, B.; Palermo, A.; Rattray, N.; Lee, N.; Zhu, Z.; Hoang, L.; Mazurek, A.; Dann, S.; VanArsdale, T.; Fantin, V.; Shields, D.; Siuzdak, G.; Johnson, C.

10.1101/348722 — biochemistry — Posted on 2018-06-16

1183 Losing maternal care: Neotenic gene expression in the preoptic area of avian brood parasites

Lynch, K.; O'Connell, L.; Louder, M.; Pellicano, A.; Gaglio, A.; Xiang, A.; Balakrishnan, C.; Fischer, E.

10.1101/349118 — animal behavior and cognition — Posted on 2018-06-16

1184 Cortical state fluctuations during sensory decision making

Jacobs, E. A. K.; Steinmetz, N. A.; Carandini, M.; Harris, K. D.

10.1101/348193 — neuroscience — Posted on 2018-06-16

1185 Neural gain control measured through cortical gamma oscillations is associated with individual variations in sensory sensitivity.

Orekhova, E. V.; Stroganova, T. A.; Schneiderman, J. F.; Lundstrom, S.; Syeda, B. R.; Sarovic, D.; Sysoeva, ; Gillberg, C.; Hadjikhani, N.

10.1101/348656 — neuroscience — Posted on 2018-06-16

1186 Characteristic impairments of goal-directed and habitual control in bulimia nervosa

Nunes, A.; Helson, T. J.; Dixon, L. M.; Trappenberg, T.; Keshen, A. R.

10.1101/348250 — neuroscience — Posted on 2018-06-16

1187 Connectome preprocessing by Consensus Clustering increases separability in group neuroimaging studies

Rasero, J.; Cortes, J. M.; Marinazzo, D.; Stramaglia, S.

10.1101/348110 — neuroscience — Posted on 2018-06-16

1188 CD38 is a key regulator of enhanced NK cell immune responses during pregnancy through its role in immune synapse formation

Le Gars, M.; Seiler, C.; Kay, A.; Bayless, N.; Starosvetsky, E.; Moore, L.; Shen-Orr, S.; Aziz, N.; Dekker, C.; Khatri, P.; Swan, G.; Davis, M.; Holmes, S.; Blish, C.

10.1101/349084 — immunology — Posted on 2018-06-16

1189 Notch3 Promotes Prostate Cancer-Induced Bone Osteoblastic Metastasis in an MMP-3-Dependent Manner

Ganguly, S. S.; Hostetter, G.; Tang, L.; Frank, S.; Saboda, K.; Mehra, R.; Wang, L.; Li, X.; Keller, E. T.; Miranti, C. K.

10.1101/349043 — cancer biology — Posted on 2018-06-16

1190 Microbial adaptation to venom is common in snakes and spiders

Esmaeilishirazifard, E.; Usher, L.; Trim, C.; Denise, H.; Sangal, V.; Tyson, G. H.; Barlow, A.; Redway, K.; Taylor, J. D.; Kremmyda-Vlachou, M.; Loftus, T. D.; Lock, M. M. G.; Wright, K.; Dalby, A.; Snyder, L. A. S.; Wuster, W.; Trim, S.; Moschos, S. A.

10.1101/348433 — microbiology — Posted on 2018-06-16

1191 Maternal group 2 innate lymphoid cells control fetal growth and protect from endotoxin-induced abortion in mice

Balmas, E.; Rana, B. M.; Hamilton, R. S.; Shreeve, N.; Kieckbusch, J.; Aye, I.; Hawkes, D. A.; Trotter, S.; Lopez-Trello, J.; Yong, H. E.; Valenti, S.; Sferruzzi-Perri, A. N.; Gaccioli, F.; McKenzie, A. N.; Colucci, F.

10.1101/348755 — immunology — Posted on 2018-06-16

1192 WDR5 regulates epithelial-to-mesenchymal transition in breast cancer cells via TGFB

Punzi, S.; Balestrieri, C.; D'Alesio, C.; Bossi, D.; Dellino, G. I.; Gatti, E.; Pruneri, G.; Criscitiello, C.; Carugo, A.; Curigliano, G.; Natoli, G.; Pelicci, P. G.; Lanfrancone, L.

10.1101/348532 — cancer biology — Posted on 2018-06-16

1193 Four assessment methods to measure student gains in a graduate course on mathematical modeling in cell biology

Dale, R.; Kato, N.; Wischusen, W.

10.1101/346890 — scientific communication and education — Posted on 2018-06-16

1194 Immune gene diversity in archaic and present-day humans

Reher, D.; Key, F. M.; Andres, A.; Kelso, J.

10.1101/348581 — genetics — Posted on 2018-06-16

1195 Frequent translation of small open reading frames in evolutionary conserved lncRNA regions

Ruiz-Orera, J.; Alba, M. M.

10.1101/348326 — evolutionary biology — Posted on 2018-06-16

1196 NADP-dependent malic enzyme 1 participates in the abscisic acid response in Arabidopsis thaliana

Arias, C.; Pavlovic, T.; Torcolese, G.; Badia, M.; Gismondi, M.; Maurino, V.; Andreo, C.; Drincovich, M.; Gerrard Wheeler, M.; Saigo, M.

10.1101/348771 — plant biology — Posted on 2018-06-16

1197 Mito-nuclear effects uncovered in admixed populations

Zaidi, A. A.; Makova, K. D.

10.1101/349126 — genetics — Posted on 2018-06-16

1198 14-3-3 recruits keratin intermediate filaments to mechanically sensitive cell-cell contacts

Mariani, R. A.; Paranjpe, S.; Dobrowolski, R.; Weber, G. F.

10.1101/349092 — cell biology — Posted on 2018-06-16

1199 Imaging forward and Reverse Traveling Waves in the Cochlea

Zosuls, A.; Rupprecht, L. C.; Mountain, D. C.

10.1101/348847 — biophysics — Posted on 2018-06-16

1200 High affinity interactions of Pb2+ with Synaptotagmin I

Katti, S.; Her, B.; Srivastava, A. K.; Taylor, A. B.; Lockless, S. W.; Igumenova, T. I.

10.1101/348748 — biophysics — Posted on 2018-06-16

1201 Altering the temporal regulation of one transcription factor drives sensory trade-offs

Ramaekers, A.; Weinberger, S.; Claeys, A.; Kapun, M.; Yan, J.; Wolf, R.; Flatt, T.; Buchner, E.; Hassan, B. A.

10.1101/348375 — developmental biology — Posted on 2018-06-15

1202 Dynamics of PAR proteins explain the oscillation and ratcheting mechanisms in dorsal closure

Durney, C. H.; Harris, T. J. C.; Feng, J. J.

10.1101/348540 — developmental biology — Posted on 2018-06-15

1203 A fat-tissue sensor couples growth to oxygen availability by remotely controlling insulin secretion

Texada, M. J.; Joergensen, A. F.; Smith, D. K.; Marple, D. F. M.; Danielsen, E. T.; Petersen, S. K.; Hansen, J. L.; Halberg, K. A.; Rewitz, K. F.

10.1101/348334 — developmental biology — Posted on 2018-06-15

1204 Androgen Receptor-Induced Integrin α6β1 and Adhesion to Laminin Promotes Survival andDrug Resistance in Castration-Resistant Prostate Cancer through BNIP3

Nollet, E. A.; Ganguly, S. S.; Schulz, V.; Cress, A. E.; Miranti, C. K.

10.1101/349050 — cancer biology — Posted on 2018-06-15

1205 Cardiac and Skeletal Actin Substrates Uniquely Tune Cardiac Myosin Strain-Dependent Mechanics

Wang, Y.; Ajtai, K.; Burghardt, T. P.

10.1101/348920 — biophysics — Posted on 2018-06-15

1206 IMPAIRED SIGNALING OF NF-κB AND NRF2 IN CX3CR1-DEFICIENT MICROGLIA: IMPLICATIONS IN TAUOPATHIES.

Castro-Sanchez, S.; Garcia-Yagüe, A.; Kügler, S.; Lastres-Becker, I.

10.1101/346304 — neuroscience — Posted on 2018-06-15

1207 Regulation of the Unfolded Protein Response by BiP AMPylation protects photoreceptors from light-dependent degeneration

Krämer, H.; Moehlman, A. T.; Orth, K.; Casey, A. K.; Servage, K.

10.1101/348797 — cell biology — Posted on 2018-06-15

1208 Role of NS1 antibodies in the pathogenesis of acute dengue infection

Jayathilaka, D.; Gomes, L.; Jeewandara, C.; Jayerathne, G. S. B.; Herath, D.; Perera, P. A.; Fernando, S.; Wijewickrama, A.; Hardman, C. S.; Ogg, G.; Malavige, G.

10.1101/348342 — immunology — Posted on 2018-06-15

1209 Cell Cycle, Energy Metabolism and DNA Repair Pathways in Cancer Cells are Suppressed by Compound Kushen Injection.

Cui, J.; Qu, Z.; Harata-Lee, Y.; Aung, T. N.; Shen, H.; Adelson, D.

10.1101/348102 — cancer biology — Posted on 2018-06-15

1210 A stochastic model of metastatic bottleneck predicts patient outcome and therapy response

Szczurek, E.; Krueger, T.; Klink, B.; Beerenwinkel, N.

10.1101/348086 — cancer biology — Posted on 2018-06-15

1211 Structure of a human intramembrane ceramidase explains enzymatic dysfunction found in leukodystrophy

Vasiliauskaite - Brooks, I.; Healey, R. D.; Rochaix, P.; Sounier, R.; Grison, C. M.; Waltrich - Augusto, T.; Fortier, M.; Hoh, F.; Saied, E. M.; Arenz, C.; Basu, S.; Leyrat, C.; Granier, S.

10.1101/348219 — biochemistry — Posted on 2018-06-15

1212 OptoGranules reveal the evolution of stress granules to ALS-FTD pathology

Taylor, J. P.; Zhang, P.; Fan, B.; Yang, P.; Temirov, J.; Messing, J.; Kim, H. J.

10.1101/348870 — neuroscience — Posted on 2018-06-15

1213 Towards a universal structural and energetic model for prokaryotic promoters

Mishra, A.; Siwach, P.; Misra, P.; Jayaram, B.; Bansal, M.; Olson, W. K.; Thayer, K.; Beveridge, D. L.

10.1101/348854 — genomics — Posted on 2018-06-15

1214 Dynamism and context-dependency in the diversification of megadiverse plant groups

Echeverria-Londono, S.; Särkinen, T.; Fenton, I. S.; Knapp, S.; Purvis, A.

10.1101/348961 — evolutionary biology — Posted on 2018-06-15

1215 Predicting and Analyzing the Response to Selection on Correlated Characters

Van Dooren, T.; Beldade, P.; Allen, C.

10.1101/348896 — evolutionary biology — Posted on 2018-06-15

1216 The N-cadherin interactome in primary cardiomyocytes as defined by quantitative proximity proteomics.

Li, Y.; Merkel, C. D.; Yang, X.; Heier, J. A.; Cantrell, P. S.; Sun, M.; Stolz, D. B.; Watkins, S. C.; Yates, N. A.; Kwiatkowski, A. V.

10.1101/348953 — cell biology — Posted on 2018-06-15

1217 Protection of circadian rhythms by the protein folding chaperone, BiP

Pickard, A.; Chang, J.; Alachkar, N.; Calverley, B.; Garva, R.; Arvan, P.; Meng, Q. J.; Kadler, K. E.

10.1101/348078 — cell biology — Posted on 2018-06-15

1218 Cell-Type Selective Markers Represented in Whole-Kidney RNA-Seq Data

Clark, J. Z.; Chen, L.; Chou, C.-L.; Jung, H. J.; Knepper, M. A.

10.1101/348615 — systems biology — Posted on 2018-06-15

1219 Unaltered prion disease in mice lacking developmental endothelial locus-1 (Del 1)

Zhu, C.; Li, Z.; Li, B.; Pfammatter, M.; Aguzzi, A.

10.1101/348177 — neuroscience — Posted on 2018-06-15

1220 Characterization of nonlinear receptive fields of visual neurons by convolutional neural network

Ukita, J.; Yoshida, T.; Ohki, K.

10.1101/348060 — neuroscience — Posted on 2018-06-15

1221 Signal sequences in the genome of Mononegavirales regulate the generation of copy-back defective viral genomes

Sun, Y.; Kim, E.; Speranza, E.; Taylor, L.; Agarwal, D.; Gerhardt, D.; Bennett, R.; Connor, J.; Grant, G.; Lopez, C.

10.1101/349001 — microbiology — Posted on 2018-06-15

1222 Genomic divergence in allopatric Northern Cardinals of the North American warm deserts is associated with behavioral differentiation

Provost, K. L.; Mauck, W. M.; Smith, B. T.

10.1101/347492 — evolutionary biology — Posted on 2018-06-15

1223 Reticulate Evolutionary History of a Western Palaearctic Bat Complex Explained by Multiple mtDNA Introgressions in Secondary Contacts

Coraman, E.; Dietz, C.; Hempel, E.; Gazaryan, A.; Levin, E.; Presetnik, P.; Zagmajster, M.; Mayer, F.

10.1101/348235 — evolutionary biology — Posted on 2018-06-15

1224 Proviral sequencing suggests the majority of the HIV reservoir is expressed over time but significant decay is obscured by clonal expansion

Pinzone, M. R.; VanBelzen, D. J.; Weissman, S.; Bertuccio, M. P.; Cannon, L.; Hwang, W.-T.; Sherman, B.; O'Doherty, U.

10.1101/348409 — immunology — Posted on 2018-06-15

1225 Chromosomal fusion and life history-associated genomic variation contribute to within-river local adaptation of Atlantic salmon

Wellband, K.; Merot, C.; Linnansaari, T.; Elliott, J. A. K.; Curry, R. A.; Bernatchez, L.

10.1101/347724 — genomics — Posted on 2018-06-15

1226 Interactions in self-assembled microbial communities saturate with diversity

Yu, X.; Polz, M. F.; Alm, E. J.

10.1101/347948 — ecology — Posted on 2018-06-15

1227 Unifying Temporal Phenomena in Human Visual Cortex

Zhou, J.; Benson, N. C.; Kay, K.; Winawer, J.

10.1101/108639 — neuroscience — Posted on 2018-06-15

1228 Aequatus: An open-source homology browser

Thanki, A. S.; Soranzo, N.; Herrero, J.; Haerty, W.; Davey, R. P.

10.1101/055632 — bioinformatics — Posted on 2018-06-15

Oliynyk, R. T.

10.1101/349019 — genetics — Posted on 2018-06-15

1230 Neighborhood size-effects in nonlinear public goods games

Kimmel, G. J.; Gerlee, P.; Brown, J. S.; Altrock, P. M.

10.1101/347401 — ecology — Posted on 2018-06-15

1231 Spontaneous but not voluntary eye blinks during spatial working memory are associated with successful performance

Lee, A. S.; Blankson, B. K.; Manza, P.; O'Rawe, J. F.; Evinger, C.; Leung, H.-C.

10.1101/345306 — neuroscience — Posted on 2018-06-15

1232 Principles Underlying the Input-Dependent Formation and Organization of Memories

Herpich, J.; Tetzlaff, C.

10.1101/346478 — neuroscience — Posted on 2018-06-15

1233 Refining the application of microbial lipids as tracers of Staphylococcus aureus growth rates in cystic fibrosis sputum

Neubauer, C.; Kasi, A. S.; Grahl, N.; Sessions, A. L.; Kopf, S.; Kato, R.; Hogan, D. A.; Newman, D. K.

10.1101/348037 — microbiology — Posted on 2018-06-15

1234 Extracellular Vesicles promote host immunity during an M. tuberculosis infection through RNA Sensing

Schorey, J.; Cheng, Y.

10.1101/346254 — microbiology — Posted on 2018-06-15

1235 Repeated inversions at the pannier intron drive diversification of intraspecific colour patterns of ladybird beetles

Ando, T.; Matsuda, T.; Goto, K.; Hara, K.; Ito, A.; Hirata, J.; Yatomi, J.; Kajitani, R.; Okuno, M.; Yamaguchi, K.; Kobayashi, M.; Takano, T.; Minakuchi, Y.; Seki, M.; Suzuki, Y.; Yano, K.; Itoh, T.; Shigenobu, S.; Toyoda, A.; Niimi, T.

10.1101/347906 — evolutionary biology — Posted on 2018-06-15

1236 IQGAP3 Overexpression Correlates with Poor Prognosis and Radiation Therapy Resistance in Breast Cancer

hua, x.; long, z.; zhang, w.; lin, c.; sun, x.; wen, w.; lu, z.; guo, n.; he, z.; Song, L.; guo, l.; Lin, H.

10.1101/346163 — cancer biology — Posted on 2018-06-15

1237 Synthesis of three major auxins from glucose in Engineered Escherichia coli

Daoyi, G.; Lihua, Z.; Sijia, K.; Zhijie, L.; Xu, C.; Xun, L.; Hong, P.

10.1101/347930 — bioengineering — Posted on 2018-06-15

1238 Dissecting the neural focus of attention reveals distinct processes for spatial attention and object-based storage in visual working memory

Hakim, N.; Adam, K. C. S.; Gunseli, E.; Awh, E.; Vogel, E. K.

10.1101/347518 — neuroscience — Posted on 2018-06-15

1239 Comparison of Generally Recognized as Safe Organic Acids for Disinfecting Fresh-cut Lettuce

Wang, J.; Tao, D.; Liu, Y.; Han, S.; Zheng, F.; Wu, Z.

10.1101/348045 — microbiology — Posted on 2018-06-15

1240 In silico identification of GPI-anchored proteins in Paracoccidioides

Basso, L. R.; Goncales, R. A.; Vasconcelos, E. J. R.; Reis, T. F.; Ruy, P. C.; Ruiz, J. C.; Coelho, P. S. R.

10.1101/347351 — microbiology — Posted on 2018-06-15

1241 MITA couples with PI3K to regulate actin reorganization during BCR activation

Liu, C.; Jing, Y.; Kang, D.; Yang, L.; Jiang, P.; Li, N.; Cheng, J.; Li, J.; Miller, H.; Ren, B.; Gong, Q.; Yin, W.; Liu, Z.; Mattila, P.; Yu, B.

10.1101/346445 — immunology — Posted on 2018-06-15

1242 Pivoting of microtubules driven by minus end directed motors leads to their alignment to form an interpolar bundle

Winters, L.; Ban, I.; Prelogovic, M.; Pavin, N.; Tolic, I. M.

10.1101/347831 — cell biology — Posted on 2018-06-15

1243 Dynamics and predicted drug response of a gene network linking dedifferentiation with beta-catenin dysfunction in hepatocellular carcinoma

Gerard, C.; Di-Luoffo, M.; Gonay, L.; Caruso, S.; Couchy, G.; Loriot, A.; Tao, J.; Konobrocka, K.; Cordi, S.; Monga, S. P.; Hanert, E.; Zucman-Rossi, J.; Lemaigre, F. P.

10.1101/347666 — cancer biology — Posted on 2018-06-15

1244 Cell boundary confinement sets the size and position of the E. coli chromosome

Wu, F.; Swain, P.; Kuijpers, L.; Zheng, X.; Felter, K.; Guurink, M.; Chaudhuri, D.; Mulder, B.; Dekker, C.

10.1101/348052 — biophysics — Posted on 2018-06-15

1245 Tool use by four species of Indo-Pacific sea urchins

Barrett, G.; Revell, D.; Harding, L.; Mills, I.; Jorcin, A.; Stiefel, K. M.

10.1101/347914 — animal behavior and cognition — Posted on 2018-06-15

1246 Regulation of spatial and temporal gene expression in an animal germline

Diag, A.; Schilling, M.; Klironomos, F.; Ayoub, S.; Rajewsky, N.

10.1101/348425 — systems biology — Posted on 2018-06-15

1247 Formal Analysis of Network Motifs

Kugler, H.; Dunn, S.-J.; Yordanov, B.

10.1101/347500 — systems biology — Posted on 2018-06-15

1248 Planktonic interference and biofilm alliance between aggregation substance and endocarditis and biofilm associated pili in Enterococcus faecalis

Kline, K. A.; Afonina, I.; Lim, X. N.; Tan, R.

10.1101/348029 — microbiology — Posted on 2018-06-15

1249 How a well-adapting immune system remembers

Mayer, A.; Balasubramanian, V.; Mora, T.; Walczak, A. M.

10.1101/347856 — immunology — Posted on 2018-06-15

1250 A small single-domain protein folds through the same pathway on- and off- the ribosome

Guinn, E. J.; Tian, P.; Shin, M.; Best, R. B.; Marqusee, S.

10.1101/347864 — biophysics — Posted on 2018-06-15

1251 Interpreting turbidity measurements for vesicle studies

Wang, A.; Chan Miller, C.; Szostak, J. W.

10.1101/348904 — biophysics — Posted on 2018-06-15

1252 Coffee polyphenols prevent cognitive dysfunction and suppress amyloid β plaques in APP/PS2 transgenic mouse

Ishida, K.; Yamamoto, M.; Misawa, K.; Ota, N.; Shimotoyodome, A.

10.1101/347963 — animal behavior and cognition — Posted on 2018-06-15

1253 UniProt Genomic Mapping for Deciphering Functional Effects of Missense Variants

McGarvey, P.; Nightingale, A.; Luo, J.; Huang, H.; Martin, M.-J.; Wu, C.; UniProt Consortium,

10.1101/192914 — genomics — Posted on 2018-06-15

1254 The fractional coalescent

Mashayekhi, S.; Beerli, P.

10.1101/195677 — evolutionary biology — Posted on 2018-06-15

1255 Tumor subclonal progression model for cancer hallmark acquisition

Matsui, Y.; Miyano, S.; Shimamura, T.

10.1101/149252 — bioinformatics — Posted on 2018-06-15

1256 Validating a 14-drug microtitre plate containing bedaquiline and delamanid for large-scale research susceptibility testing of Mycobacterium tuberculosis

Rancoita, P. M.; Cugnata, F.; Gibertoni Cruz, A. L.; Borroni, E.; Hoosdally, S. J.; Walker, T. M.; Grazian, C.; Davies, T. J.; Peto, T. E.; Crook, D. W.; Fowler, P. W.; Cirillo, D. M.; the CRyPTIC Consortium,

10.1101/244731 — microbiology — Posted on 2018-06-15

1257 Automated detection of bacterial growth on 96-well plates for high-throughput drug susceptibility testing of Mycobacterium tuberculosis

Fowler, P. W.; Gibertoni Cruz, A. L.; Hoosdally, S. J.; Jarrett, L.; Borroni, E.; Chiacchiaretta, M.; Rathod, P.; Walker, T. M.; Robinson, E.; Peto, T. E.; Cirillo, D. M.; Smith, E. G.; Crook, D. W.

10.1101/229427 — microbiology — Posted on 2018-06-15

1258 Clonal expansion of mitochondrial DNA deletions is a private mechanism of ageing in long-lived animals

Lakshmanan, L. N.; Yee, Z.; Ng, L. F.; Gunawan, R.; Halliwell, B.; Gruber, J.

10.1101/273326 — genetics — Posted on 2018-06-15

1259 The utility of mortality hazard rates in population analyses

Ergon, T.; Borgan, O.; Nater, C. R.; Vindenes, Y.

10.1101/216739 — ecology — Posted on 2018-06-15

1260 Open Force Field Consortium: Escaping atom types using direct chemical perception with SMIRNOFF v0.1

Mobley, D.; Bannan, C. C.; Rizzi, A.; Bayly, C. I.; Chodera, J. D.; Lim, V. T. T.; Lim, N. M.; Beauchamp, K. A.; Shirts, M. R.; Gilson, M. K.; Eastman, P. K.

10.1101/286542 — biophysics — Posted on 2018-06-15

1261 The Reach Cage environment for wireless neural recordings during structured goal-directed behavior of unrestrained monkeys

Berger, M.; Gail, A.

10.1101/305334 — neuroscience — Posted on 2018-06-15

1262 USP9X regulates DVL2 ubiquitylation to determine WNT pathway specification

Nielsen, C. P.; Jernigan, K. K.; MacGurn, J. A.

10.1101/289595 — cell biology — Posted on 2018-06-15

1263 Complex-centric proteome profiling by SEC-SWATH-MS

Heusel, M.; Bludau, I.; Rosenberger, G.; Hafen, R.; Frank, M.; Banaei-Esfahani, A.; Collins, B.; Gstaiger, M.; Aebersold, R.

10.1101/323683 — systems biology — Posted on 2018-06-15

1264 Semi-Analytic Nonparametric Bayesian Inference for Spike-Spike Neuronal Connectivity

Ambrogioni, L.; Ebel, P.; Hinne, M.; Guclu, U.; van Gerven, M.; Maris, E.

10.1101/340489 — neuroscience — Posted on 2018-06-15

1265 RNA polymerase II clustering through CTD phase separation

Boehning, M.; Dugast-Darzacq, C.; Rankovic, M.; Hansen, A. S.; Yu, T.-K.; Marie-Nelly, H.; McSwiggen, D. T.; Kokic, G.; Dailey, G. M.; Cramer, P.; Darzacq, X.; Zweckstetter, M.

10.1101/316372 — molecular biology — Posted on 2018-06-15

1266 Design and assessment of species-level qPCR primers targeting comammox

Keene-Beach, N.; Noguera, D. R.

10.1101/348664 — microbiology — Posted on 2018-06-15

1267 An efficient and improved laboratory workflow and tetrapod database for larger scale eDNA studies

Axtner, J.; Crampton-Platt, A.; Hoerig, L. A.; Mohamed, A.; Xu, C. C. Y.; Yu, D. W.; Wilting, A.

10.1101/345082 — molecular biology — Posted on 2018-06-15

1268 Divergent gene expression among phytoplankton taxa in response to upwelling

Lampe, R. H.; Cohen, N. R.; Ellis, K. A.; Bruland, K. W.; Maldonado, M. T.; Peterson, T. D.; Till, C. P.; Brzezinski, M. A.; Bargu, S.; Thamatrakoln, K.; Kuzminov, F. I.; Twining, B. S.; Marchetti, A.

10.1101/286138 — microbiology — Posted on 2018-06-15

1269 Interleukin 22 mediates interleukin 23-induced pathology in newborn mice by disrupting the function of pancreatic and intestinal cells

Furtado, G. C.; Chen, L.; Strohmeier, V.; He, Z.; Deshpande, M.; Durum, S. K.; Moran, T. M.; Kraus, T.; Faith, J. J.; Lira, S. A.

10.1101/346577 — immunology — Posted on 2018-06-15

1270 Bleeding, Cramping, and Satisfaction Among New Copper IUD Users: A Prospective Study

Sanders, J. N.; Adkins, D.; Kaur, S.; Stork, K.; Gawron, L.; Turok, D.

10.1101/348094 — epidemiology — Posted on 2018-06-15

1271 HOME: A histogram based machine learning approach for effective identification of differentially methylated regions

Srivastava, A.; Karpievitch, Y. V.; Eichten, S. R.; Borevitz, J. O.; Lister, R.

10.1101/228221 — bioinformatics — Posted on 2018-06-15

1272 Cluster Failure Revisited: Impact of First Level Design and Data Quality on Cluster False Positive Rates

Eklund, A.; Knutsson, H.; Nichols, T. E.

10.1101/296798 — neuroscience — Posted on 2018-06-15

1273 Charge fluctuation effects on the shape of flexible polyampholytes with applications to Intrinsically disordered proteins

Thirumalai, D.; Chakraborty, D.; Samanta, H.

10.1101/301911 — biophysics — Posted on 2018-06-15

1274 Healthy oscillatory coordination is bounded by single-unit computation.

Peterson, E. J.; Voytek, B.

10.1101/309427 — neuroscience — Posted on 2018-06-15

1275 Combinatorial quorum sensing in Pseudomonas aeruginosa allows for novel cheating strategies

Gurney, J.; Azimi, S.; McNally, A.; Brown, S. P.; Diggle, S. P.

10.1101/313502 — microbiology — Posted on 2018-06-15

1276 Polygenic adaptation and convergent evolution across both growth and cardiac genetic pathways in African and Asian rainforest hunter-gatherers

Bergey, C. M.; Lopez, M.; Harrison, G. F.; Patin, E.; Cohen, J.; Quintana-Murci, L.; Barreiro, L. B.; Perry, G. H.

10.1101/300574 — genomics — Posted on 2018-06-15

1277 Drosophila egg-derived tyrosine phosphatase (EDTP): a novel target for improved survivorship to prolonged anoxia and cellular protein aggregates

Xiao, C.; Qiu, S.; Li, X.; Luo, D.-J.; Liu, G.-P.

10.1101/279885 — genetics — Posted on 2018-06-15

1278 The evolution and maintenance of extraordinary allelic diversity

Siljestam, M.; Rueffler, C.

10.1101/347344 — evolutionary biology — Posted on 2018-06-15

1279 Metal-independent ribonucleotide reduction powered by a DOPA radical in Mycoplasma pathogens

Srinivas, V.; Lebrette, H.; Lundin, D.; Kutin, Y.; Sahlin, M.; Lerche, M.; Eirich, J.; Branca, R.; Cox, N.; Sjöberg, B.-M.; Högbom, M.

10.1101/348268 — biochemistry — Posted on 2018-06-15

1280 Gas seepage pockmark microbiomes suggest the presence of sedimentary coal seams in the Oxarfjordur graben of NE-Iceland

Thorsteinsdottir, G. V.; Blischke, A.; Sigurbjornsdottir, A.; Oskarsson, F.; Arnarson, T. S.; Magnusson, K. P.; Vilhelmsson, O.

10.1101/348011 — microbiology — Posted on 2018-06-15

1281 Spatial transcriptomics of C. elegans males and hermaphrodites identifies novel fertility genes

Ebbing, A.; Vertesy, A.; Betist, M.; Spanjaard, B.; Junker, J. P.; van Oudenaarden, A.; Berezikov, E.; Korswagen, H.

10.1101/348201 — genomics — Posted on 2018-06-15

1282 Base pair editing of goat embryos: nonsense codon introgression into FGF5 to improve cashmere yield

Li, G.; Zhou, S.; Li, C.; Cai, B.; Yu, H.; Ma, B.; Huang, Y.; Ding, Y.; Liu, Y.; Ding, Q.; He, C.; Zhou, J.; Wang, Y.; Zhou, G.; Li, Y.; Yan, Y.; Hua, J.; Petersen, B.; Jiang, Y.; Sonstegard, T.; Huang, X.; Chen, Y.; Wang, x.

10.1101/348441 — genetics — Posted on 2018-06-15

1283 Gene therapy in argininosuccinic aciduria

Baruteau, J.; Perocheau, D. P.; Hanley, J.; Rocha Ferreira, E.; Karda, R.; Ng, J.; Suff, N.; Rahim, A.; Hughes, M.; Banushi, B.; Prunty, H.; Hristova, M.; Ridout, D.; Virasami, A.; Heales, S.; Howe, S.; Buckley, S.; Mills, P.; Gissen, P.; Waddington, S.

10.1101/348292 — genetics — Posted on 2018-06-15

1284 E-cadherin represses anoikis resistance in sarcomas through both signaling and mechanical mechanisms

Jolly, M. K.; Ware, K. E.; Xu, S.; Gilja, S.; Shetler, S.; Yang, Y.; Wang, X.; Austin, G.; Hish, A. J.; Bartholf DeWitt, S.; George, J. T.; Kreulen, R. T.; Boss, M.-K.; Lazarides, A. L.; Kerr, D. L.; Gerber, D. G.; Armstrong, A. J.; Dewhirst, M. W.; Eward, W. C.; Levine, H.; Somarelli, J. A.

10.1101/347815 — cancer biology — Posted on 2018-06-15

1285 Xylanolytic psychrotrophs from andosolic sedge fens and moss heaths in Iceland

Rickman, O. J.; Sigurbjornsdottir, A.; Vilhelmsson, O.

10.1101/348003 — microbiology — Posted on 2018-06-15

1286 Non-invasive prenatal testing as a valuable source of population specific allelic frequencies

Budis, J.; Gazdarica, J.; Radvanszky, J.; Harsanyova, M.; Gazdaricova, I.; Strieskova, L.; Frno, R.; Duris, F.; Minarik, G.; Sekelska, M.; Szemes, T.

10.1101/348466 — genomics — Posted on 2018-06-15

1287 Genome-wide analysis of H3K4me3 and H3K27me3 modifications throughout the mouse urogenital ridge at E11.5.

Yang, Y.; Wilson, M. J.

10.1101/347880 — developmental biology — Posted on 2018-06-15

1288 Nuclear speckle fusion via long-range directional motion regulates the number and size of speckles

Kim, J.; Han, K. Y.; Khanna, N.; Ha, T.; Belmont, A. S.

10.1101/347955 — cell biology — Posted on 2018-06-15

1289 Soil viruses are underexplored players in ecosystem carbon processing

Trubl, G.; Jang, H. B.; Roux, S.; Emerson, J. B.; Solonenko, N.; Vik, D. R.; Solden, L.; Ellenbogen, J.; Runyon, A. T.; Bolduc, B.; Woodcroft, B. J.; Saleska, S. R.; Tyson, G. W.; Wrighton, K. C.; Sullivan, M. B.; Rich, V. I.

10.1101/338103 — microbiology — Posted on 2018-06-15

1290 Spt6 is required for the fidelity of promoter selection

Doris, S. M.; Chuang, J.; Viktorovskaya, O.; Murawska, M.; Spatt, D.; Churchman, L. S.; Winston, F.

10.1101/347575 — genomics — Posted on 2018-06-15

1291 Time-delay model of perceptual decision making in cortical networks

Bielczyk, N.; Piska?a, K.; P?omecka, M.; Radzi?ski, P.; Todorova, L.; Fory?, U.

10.1101/348276 — neuroscience — Posted on 2018-06-15

1292 Exploratory analyses suggest less cognitive decline on nilvadipine treatment in very mild Alzheimer’s disease subjects

Abdullah, L.; Crawford, F.; Langlois, H.; Hendrix, S.; Kennelly, S.; Lawlor, B.; Mullan, M.

10.1101/345652 — clinical trials — Posted on 2018-06-15

1293 Critical contribution of endothelial protein C receptor in experimental malaria-associated acute respiratory distress syndrome

Ortolan, L. d. S.; Sercundes, M. K.; Moura, G. C.; Quirino, T. d. C.; Debone, D.; Costa, D. d. S.; Murillo, O.; Marinho, C. R. F.; Epiphanio, S.

10.1101/348318 — pathology — Posted on 2018-06-15

1294 Genome-wide identification of functional tRNA-derived fragments in Senescence-accelerated mouse prone 8 brain

Zhang, S.; Li, H.; Zheng, L.; Li, H.; Feng, C.; Zhang, W.

10.1101/348300 — neuroscience — Posted on 2018-06-15

1295 An ODE-based mixed modelling approach for B- and T-cell dynamics induced by Varicella-Zoster Virus vaccines in adults shows higher T-cell proliferation with Shingrix compared to Varilrix

Keersmaekers, N.; Ogunjimi, B.; Van Damme, P.; Beutels, P.; Hens, N.

10.1101/348284 — immunology — Posted on 2018-06-15

1296 Netrin-1 plays a role in the effect of 10 weeks moderate exercise on myocardial fibrosis in rats.

daliang, z.; hong, f.; lifang, y.; WEIMIN, l.; Fu Hong, Yu Lifang, Zhang Lingling, Wei Lin, Li Dapeng, Zhang Tianshu,

10.1101/348185 — animal behavior and cognition — Posted on 2018-06-15

1297 Evaluation of the capacity of Pediatricians in Nigeria to conduct of research: A nationwide Survey.

Ughasoro, M. D.; Jalo, I.; Okolo, A. N.; Adejiyugbe, E.; Murktah, M.; Omogbarare, A.; Onankpa, B.; Ibeziako, N. S.; Ubesie, A.; Nwaneri, D.; Ezechukwu, C.; Oguche, S.; Paediatric Association of Nigeria Research Committee,

10.1101/348128 — scientific communication and education — Posted on 2018-06-15

1298 Pasakbumin A controls the growth of Mycobacterium tuberculosis by enhancing the autophagy and production of antibacterial mediators in mouse macrophages

Lee, H.-J.; Ko, H.-J.; Kim, S. H.; Jung, Y.-J.

10.1101/348144 — immunology — Posted on 2018-06-15

1299 Detecting spatiotemporal pattern of tuberculosis and the relationship between ecological environment and tuberculosis, a spatial panel data analysis in Guangxi, China

CUI, Z.; Lin, D.; Chongsuvivatwong, V.; Zhao, J.; Lin, M.; Ou, J.; Zhao, J.

10.1101/348169 — epidemiology — Posted on 2018-06-15

1300 Validation of an automated segmentation algorithm for lower leg MR images, applied to sodium quantification

Greer, J.; Wang, P.; Deger, S. M.; Alsouqi, A.; Ikizler, T. A.; Titze, J. M.; Rogers, B. P.

10.1101/348136 — physiology — Posted on 2018-06-15

1301 The effect of a free radical scavenger on oxidation stress in partial bladder outlet obstruction and its relief in a rat model

Choo, M. S.; Piao, S.; Oh, S.-J.

10.1101/348151 — biochemistry — Posted on 2018-06-15

1302 Bleeding, Cramping, and Satisfaction Among New Copper IUD Users: A Prospective Study

Sanders, J. N.; Adkins, D.; Kuar, S.; Stork, K.; Gawron, L.; Turok, D.

10.1101/348094 — epidemiology — Posted on 2018-06-15

1303 Oscillations in spontaneous and visually evoked neuronal activity in the superficial layers of the cat’s superior colliculus

Foik, A. T.; Ghazaryan, A.; Waleszczyk, W. J.

10.1101/347799 — neuroscience — Posted on 2018-06-15

1304 Chronic estrus disrupts uterine gland development and homeostasis

Stewart, C. A.; Stewart, M. D.; Wang, Y.; Liang, R.; Liu, Y.; Behringer, R.

10.1101/347757 — developmental biology — Posted on 2018-06-15

1305 PennZzz - an algorithm for estimating behavioral states from wrist-worn accelerometery

McCloskey, R.; Goodman, M. H.; McHugh Grant, S.; Ghorai, A.; Gehrman, P. R.; Bucan, M.

10.1101/347807 — physiology — Posted on 2018-06-15

1306 SIV/SHIV-Zika coinfection does not alter disease pathogenesis in adult non-pregnant Rhesus Macaques

Bidokhti, M.; Dutta, D.; Madduri, L.; Woollard, S.; Norgren, R.; Giavedoni, L.; Byrareddy, S.

10.1101/347708 — microbiology — Posted on 2018-06-15

1307 Evolution and developmental diversity of skin spines in pufferfish

Shono, T.; Thiery, A. P.; Kurokawa, D.; Britz, R.; Fraser, G. J.

10.1101/347690 — developmental biology — Posted on 2018-06-15

1308 Untargeted Mass Spectrometry-Based Metabolomics Tracks Molecular Changes in Raw and Processed Foods and Beverages

Gauglitz, J. M.; Aceves, C. M.; Aksenov, A. A.; Aleti, G.; Almaliti, J.; Bouslimani, A.; Brown, E. A.; Campeau, A.; Caraballo-Rodriguez, A. M.; Chaar, R.; da Silva, R. R.; Demko, A. M.; Di Ottavio, F.; Elijah, E.; Ernst, M.; Ferguson, L. P.; Holmes, X.; van der Hooft, J. J. J.; Jarmusch, A. K.; Jiang, L.; Kang, K. B.; Koester, I.; Kwan, B.; Ni, B.; Li, J.; Li, Y.; Melnik, A. V.; Molina-Santiago, C.; Oom, A. L.; Panitchpakdi, M. W.; Petras, D.; Quinn, R.; Sikora, N. C.; Spengler, K.; Teke, B.; Tripathi, A.; Ul-Hasan, S.; Vargas, F.; Vrbanac, A.; Vu, A. Q.; Wang, S. C.; Weldon, K.; Wilson, K.; W

10.1101/347716 — biochemistry — Posted on 2018-06-15

1309 Distinct Modes of Functional Connectivity induced by Movie-Watching

Demirtas, M.; Ponce-Alvarez, A.; Gilson, M.; Hagmann, P.; Mantini, D.; Betti, V.; Romani, G. L.; Friston, K.; Corbetta, M.; Deco, G.

10.1101/286484 — neuroscience — Posted on 2018-06-14

1310 How Public Transport affected the Propagation of Zika and Microcephaly within Rio de Janeiro early in 2015

Armstrong, M.; Coelho, F. C.; Bastos, L.; Saraceni, V.; Lemos, C.; Silva, M.; Sant'Anna, L.; Crespo, J.; Watanabe, M. S.

10.1101/345454 — epidemiology — Posted on 2018-06-14

1311 Birth attendance in rural Bangladesh: practices and correlates

Korim, F.

10.1101/344788 — epidemiology — Posted on 2018-06-14

1312 Improved state-level influenza activity nowcasting in the United States leveraging Internet-based data sources and network approaches via ARGONet

Lu, F.; Hattab, M.; Clemente, L.; Santillana, M.

10.1101/344580 — epidemiology — Posted on 2018-06-14

1313 Knowledge and attitudes of Ebola among the general public of Trinidad and Tobago during the 2014-15 West Africa outbreak

Pooransingh, S.; Mohammed, S.; Melville, K.; Mohammed, C.; Mohammed, M.; Mohammed, R. A.; Mootoo, W.; Motilal, D.; Morris, M.; Bhagwandeen, B.; Dialsingh, I.

10.1101/346999 — epidemiology — Posted on 2018-06-14

1314 The evolution and maintenance of extraordinary allelic diversity

Siljestam, M.; Rueffler, C.

10.1101/347344 — evolutionary biology — Posted on 2018-06-14

1315 Nominally non-responsive frontal and sensory cortical cells encode task-relevant variables via ensemble consensus-building

Insanally, M. N.; Carcea, I.; Field, R. E.; Rodgers, C. C.; DePasquale, B.; Rajan, K.; DeWeese, M. R.; Albanna, B. F.; Froemke, R. C.

10.1101/347617 — neuroscience — Posted on 2018-06-14

1316 Understanding trivial challenges of microbial genomics: An assembly example

Lariviere, D.; Mei, H.; Freeberg, M.; Taylor, J.; Nekrutenko, A.

10.1101/347625 — microbiology — Posted on 2018-06-14

1317 TIAM-1/GEF can shape somatosensory dendrites independently of its GEF activity by regulating F-actin localization

Tang, L. T. H.; Diaz-Balzac, C. A.; Rahman, M.; Ramirez-Suarez, N. J.; Salzberg, Y.; Lazaro-Pena, M. I.; Bülow, H. E.

10.1101/347567 — developmental biology — Posted on 2018-06-14

1318 Histone Acetyltransferase Kat2a Stabilises Pluripotency with Control of Transcriptional Heterogeneity

Moris, N.; Edri, S.; Seyres, D.; Kulkarni, R.; Domingues, A. F.; Balayo, T.; Frontini, M.; Pina, C.

10.1101/347476 — developmental biology — Posted on 2018-06-14

1319 Local-community network automata modelling based on length-three-paths for prediction of complex network structures in protein interactomes, food webs and more

Muscoloni, A.; Abdelhamid, I.; Cannistraci, C. V.

10.1101/346916 — systems biology — Posted on 2018-06-14

1320 Default mode and primary visual network coupling is associated with increased mind-wandering frequency in Parkinson’s disease with visual hallucinations

Walpola, I. C.; Muller, A. J.; Hall, J. M.; Andrews-Hanna, J. R.; Irish, M.; Lewis, S. J. G.; Shine, J. M.; O'Callaghan, C.

10.1101/347658 — neuroscience — Posted on 2018-06-14

1321 Aberrant Information Transfer Interferes with Functional Axon Regeneration

Ding, C.; Hammarlund, M.

10.1101/347427 — neuroscience — Posted on 2018-06-14

1322 Distinct roles and requirements for Ras pathway signaling in visceral versus somatic muscle founder specification

Zhou, Y.; Popadowski, S. E.; Deustchman, E.; Halfon, M. S.

10.1101/347526 — developmental biology — Posted on 2018-06-14

1323 Active fluctuations modulate gene expression in mouse oocytes

Almonacid, M.; El-Hayek, S.; Othmani, A.; Queguiner, I.; Coulpier, F.; Lemoine, S.; Bastianelli, L.; Klein, C.; Piolot, T.; Mailly, P.; Voituriez, R.; Genovesio, A.; Verlhac, M.-H.

10.1101/347310 — cell biology — Posted on 2018-06-14

1324 Local unfolding of the HSP27 monomer regulates chaperone activity

Alderson, T. R.; Roche, J.; Gastall, H. Y.; Pritisanac, I.; Ying, J.; Bax, A.; Benesch, J. L. P.; Baldwin, A. J.

10.1101/345751 — biophysics — Posted on 2018-06-14

1325 SqueezeM, a fully automatic metagenomic analysis pipeline from reads to bins

Tamames, J.; Puente-Sanchez, F.

10.1101/347559 — bioinformatics — Posted on 2018-06-14

1326 Quantification of nuclear protein dynamics reveals chromatin remodeling during acute protein degradation

Federation, A. J.; Nandakumar, V.; Wang, H.; Searle, B.; Pino, L.; Merrihew, G.; Ting, Y. S.; Howard, N.; Kutyavin, T.; MacCoss, M. J.; Stamatoyannopoulos, J. A.

10.1101/345686 — systems biology — Posted on 2018-06-14

1327 Biological motion as an innate perceptual mechanism driving social affiliation

Larsch, J.; Baier, H.

10.1101/347419 — neuroscience — Posted on 2018-06-14

1328 Machine learning to classify animal species in camera trap images: applications in ecology

Tabak, M. A.; Norouzzadeh, M. S.; Wolfson, D. W.; Sweeney, S. J.; VerCauteren, K. C.; Snow, N. P.; Halseth, J. M.; Di Salvo, P. A.; Lewis, J. S.; White, M. D.; Teton, B.; Beasley, J. C.; Schlichting, P. E.; Boughton, R. K.; Wight, B.; Newkirk, E. S.; Ivan, J. S.; Odell, E. A.; Brook, R. K.; Lukacs, P. M.; Moeller, A. K.; Mandeville, E. G.; Clune, J.; Miller, R. S.

10.1101/346809 — ecology — Posted on 2018-06-14

1329 G-quadruplex DNA drives genomic instability and represents a targetable molecular abnormality in ATRX-deficient malignant glioma

Wang, Y.; Yang, J.; Wu, W. H.; Shah, R.; Danussi, C.; Riggins, G. J.; Kannan, K.; Sulman, E. P.; Chan, T. A.; Huse, J. T.

10.1101/347542 — cancer biology — Posted on 2018-06-14

1330 Scalable Methods for Post-Processing, Visualizing, and Analyzing Phylogenetic Placements

Czech, L.; Stamatakis, A.

10.1101/346353 — bioinformatics — Posted on 2018-06-14

1331 Large-scale, quantitative protein assays on a high-throughput DNA sequencing chip

Layton, C. J.; McMahon, P. L.; Greenleaf, W. J.

10.1101/342808 — molecular biology — Posted on 2018-06-14

1332 The radial expression of dorsal-ventral patterning genes in placozoans, Trichoplax adhaerens, argues for an oral-aboral axis

DuBuc, T.; Bobkov, Y.; Ryan, J. F.; Martindale, M.

10.1101/345777 — developmental biology — Posted on 2018-06-14

1333 Genetic dissection of an ancient divergence in yeast thermotolerance

Weiss, C.; Roop, J. I.; Hackley, R.; Chuong, J.; Grigoriev, I. V.; Arkin, A. P.; Skerker, J. M.; Brem, R. B.

10.1101/220913 — evolutionary biology — Posted on 2018-06-14

1334 Detection of race-specific resistance against Puccinia coronata f. sp. avenae in Brachypodium species

Omidvar, V.; Dugyala, S.; Li, F.; Rottschaefer, S.; Miller, M.; Ayliffe, M.; Moscou, M.; Kianian, S.; Figueroa, M.

10.1101/281568 — pathology — Posted on 2018-06-14

1335 Ancient tropical extinctions contributed to the latitudinal diversity gradient

Meseguer, A. S.; Condamine, F. L.

10.1101/236646 — evolutionary biology — Posted on 2018-06-14

1336 Gradual progression from sensory to task-related processing in cerebral cortex

Brincat, S. L.; Siegel, M.; von Nicolai, C.; Miller, E. K.

10.1101/195602 — neuroscience — Posted on 2018-06-14

1337 Inferring hidden structure in multilayered neural circuits

Maheswaranathan, N.; Kastner, D. B.; Baccus, S. A.; Ganguli, S.

10.1101/120956 — neuroscience — Posted on 2018-06-14

1338 No compelling evidence that more physically attractive young adult women have higher estradiol or progesterone

Jones, B. C.; Hahn, A. C.; Fisher, C. I.; Wang, H.; Kandrik, M.; Lao, J.; Han, C.; Lee, A. J.; Holzleitner, I. J.; DeBruine, L. M.

10.1101/136515 — animal behavior and cognition — Posted on 2018-06-14

1339 Verbal paired associates and the hippocampus: The role of scenes

Clark, I. A.; Kim, M.; Maguire, E. A.

10.1101/206250 — neuroscience — Posted on 2018-06-14

1340 I Like Coffee With Cream And Dog? Change In An Implicit Probabilistic Representation Captures Meaning Processing In The Brain

Rabovsky, M.; Hansen, S. S.; McClelland, J. L.

10.1101/138149 — neuroscience — Posted on 2018-06-14

1341 Non-monotonic recruitment of ventromedial prefrontal cortex during remote memory recall

Barry, D. N.; Chadwick, M. J.; Maguire, E. A.

10.1101/202689 — neuroscience — Posted on 2018-06-14

1342 Enumerating the Economic Cost of Antimicrobial Resistance Per Antibiotic Consumed to Inform the Evaluation of Interventions Affecting their Use

Shrestha, P.; Cooper, B. S.; Coast, J.; Oppong, R.; Do, N. T. T.; Podha, T.; Guerin, P. J.; Wertheim, H. F.; Lubell, Y.

10.1101/206656 — epidemiology — Posted on 2018-06-14

1343 Fibroblast state switching orchestrates dermal maturation and wound healing

Rognoni, E.; Oliveira Pisco, A.; Hiratsuka, T.; Sipila, K.; Belmonte, J.; Mobasseri, A.; Philippeos, C.; Dilao, R.; Watt, F.

10.1101/236232 — systems biology — Posted on 2018-06-14

1344 The Facultative Sex Coalescent with CrossingOver and Gene Conversion

Hartfield, M.; Wright, S.; Agrawal, A.

10.1101/232405 — evolutionary biology — Posted on 2018-06-14

1345 Data management and sharing in neuroimaging: Practices and perceptions of MRI researchers

Borghi, J. A.; Van Gulick, A. E.

10.1101/266627 — neuroscience — Posted on 2018-06-14

1346 Shared contextual knowledge strengthens inter-subject synchrony and pattern similarity in the semantic network

Raykov, P. P.; Keidel, J. L.; Oakhill, J.; Bird, C. M.

10.1101/276683 — neuroscience — Posted on 2018-06-14

1347 QTL mapping of natural variation reveals that the developmental regulator bruno reduces tolerance to P-element transposition in the Drosophila female germline

Kelleher, E.; Jaweria, J.; Akoma, U.; Ortega, L.; Tang, W.

10.1101/282541 — genetics — Posted on 2018-06-14

1348 Coevolution of male and female mate choice can destabilize reproductive isolation

Aubier, T. G.; Kokko, H.; Joron, M.

10.1101/246355 — evolutionary biology — Posted on 2018-06-14

1349 Rapid Reconstruction of Time-varying Gene Regulatory Networks

Pyne, S.; Kumar, A. R.; Anand, A.

10.1101/272484 — bioinformatics — Posted on 2018-06-14

1350 NAT/NCS2-hound: A webserver for the detection and evolutionary classification of prokaryotic and eukaryotic nucleobase-cation symporters of the NAT/NCS2 family.

Chaliotis, A.; Vlastaridis, P.; Ntountoumi, C.; Botou, M.; Yalelis, V.; Lazou, P.; Tatsaki, K.; Mossialos, D.; Frillingos, S.; Amoutzias, G.

10.1101/332452 — bioinformatics — Posted on 2018-06-14

1351 Deep learning models reveal internal structure and diverse computations in the retina under natural scenes

Maheswaranathan, N.; McIntosh, L. T.; Kastner, D. B.; Melander, J.; Brezovec, L.; Nayebi, A.; Wang, J.; Ganguli, S.; Baccus, S. A.

10.1101/340943 — neuroscience — Posted on 2018-06-14

1352 Diverse motif ensembles specify non-redundant DNA binding activities of AP-1 family members in macrophages

Fonseca, G. J.; Tao, J.; Westin, E. M.; Duttke, S. H.; Spann, N. J.; Strid, T.; Shen, Z.; Stender, J. D.; Link, V. M.; Benner, C.; Glass, C. K.

10.1101/345835 — genomics — Posted on 2018-06-14

1353 OUTRIDER: A statistical method for detecting aberrantly expressed genes in RNA sequencing data

Brechtmann, F.; Matuseviciute, A.; Mertes, C.; Yepez, V. A.; Avsec, Z.; Herzog, M.; Bader, D. M.; Prokisch, H.; Gagneur, J.

10.1101/322149 — bioinformatics — Posted on 2018-06-14

1354 Escherichia coli β-clamp slows down DNA polymerase I dependent nick translation while accelerating ligation

Bhardwaj, A.; Ghose, D.; Thakur, K. G.; Dutta, D.

10.1101/256537 — biochemistry — Posted on 2018-06-14

1355 Accuracy and reliability of PBR28 specific binding estimated without the use of a reference region

Plaven-Sigray, P.; Schain, M.; Zanderigo, F.; Karolinska [11C]PBR28 study group, ; Rabiner, I.; Gunn, R.; Ogden, T.; Cervenka, S.

10.1101/345645 — neuroscience — Posted on 2018-06-14

1356 Opening Pandora box - high level resistance to antibiotics of last resort in Gram negative bacteria from Nigeria

Ogbolu, D. O.; Webber, M. A.; Piddock, L. J.

10.1101/344093 — microbiology — Posted on 2018-06-14

1357 C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

Kouno, T.; Moody, J.; Kwon, A.; Shibayama, Y.; Kato, S.; Huang, Y.; Böttcher, M.; Motakis, E.; Mendez, M.; Severin, J.; Luginbühl, J.; Abugessaisa, I.; Hasegawa, A.; Takizawa, S.; Arakawa, T.; Furuno, M.; Ramalingam, N.; West, J.; Suzuki, H.; Kasukawa, T.; Lassmann, T.; Hon, C.-C.; Arner, E.; Carninci, P.; Plessy, C.; Shin, J. W.

10.1101/330845 — genomics — Posted on 2018-06-14

1358 Delineating functional sites in the K13 antimalarial resistance protein through evolutionary and structural analyses

Coppee, R.; Jeffares, D.; Sabbagh, A.; Clain, J.

10.1101/346668 — evolutionary biology — Posted on 2018-06-14

1359 Humanized Mcl-1 mice enable accurate pre-clinical evaluation of MCL-1 inhibitors destined for clinical use

Brennan, M. S.; Chang, C.; Dewson, G.; Tai, L.; Lessene, G.; Strasser, A.; Kelly, G. L.; Herold, M. J.

10.1101/335430 — cancer biology — Posted on 2018-06-14

1360 A Combined Numerical and Experimental Investigation of Localized Electroporation-based Transfection and Sampling

Mukherjee, P.; Nathamgari, S. S. P.; Kessler, J. A.; Espinosa, H. D.

10.1101/346981 — biophysics — Posted on 2018-06-14

1361 Analyze Nucleic Acids Structures and Trajectories with Barnaba.

Bottaro, S.; Bussi, G.; Pinamonti, G.; Reisser, S.; Boomsma, W.; Lindorff-Larsen, K.

10.1101/345678 — bioinformatics — Posted on 2018-06-14

1362 Local-community network automata modelling based on length-three-paths for prediction of complex network structures in protein interactomes, food webs and more

Muscoloni, A.; Abdelhamid, I.; Cannistraci, C. V.

10.1101/346916 — systems biology — Posted on 2018-06-14

1363 Functional decoupling of emotion coping network subserves automatic emotion regulation by implementation intention

Chen, S.; Ding, N.; Biswal, B.; Li, Z.; Qin, S.; Xie, C.; Chen, C.; Yuan, J.

10.1101/336800 — neuroscience — Posted on 2018-06-14

1364 FMRFa receptor stimulated Ca2+ signals alter the activity of flight modulating central dopaminergic neurons in Drosophila melanogaster

Ravi, P.; Trivedi, D.; Hasan, G.

10.1101/336768 — genetics — Posted on 2018-06-14

1365 Holistic optimization of RNA-seq workflow for multi-threaded environments

Hung, L.-H.; Lloyd, W.; Sridhar, R. A.; Ravishankar, S. D. A.; Xiong, Y.; Sobie, E.; Yeung, K. Y.

10.1101/345819 — bioinformatics — Posted on 2018-06-14

1366 The MoT3 assay does not distinguish between Magnaporthe oryzae wheat and rice blast isolates from Bangladesh

Gupta, D. R.; Reyes Avila, C. S.; Win, J.; Soanes, D. M.; Ryder, L. S.; Croll, D.; Bhattacharjee, P.; Hossain, M. S.; Mahmud, N. U.; Mehbub, M. S.; Surovy, M. Z.; Talbot, N. J.; Kamoun, S.; Islam, M. T.

10.1101/345215 — plant biology — Posted on 2018-06-14

1367 Direct evidence for prediction signals in frontal cortex independent of prediction error

Duerschmid, S.; Reichert, C.; Hinrichs, H.; Heinze, H.-J.; Kirsch, H. E.; Knight, R. T.; Deouell, L. Y.

10.1101/346213 — neuroscience — Posted on 2018-06-14

1368 Capturing the spatiotemporal dynamics of task-initiated thoughts with combined EEG and fMRI

Brechet, L.; Brunet, D.; Birot, G.; Gruetter, R.; Michel, C. M.; Jorge, J.

10.1101/346346 — neuroscience — Posted on 2018-06-14

1369 Identifying models of a pragmatic theory of ecology

Travassos-Britto, B.; Pardini, R.; El-Hani, C.; Prado, P. I.

10.1101/344200 — ecology — Posted on 2018-06-14

1370 Capturing variation impact on molecular interactions: the IMEx Consortium mutations data set

10.1101/346833 — bioinformatics — Posted on 2018-06-14

1371 Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data

Webster, T. H.; Couse, M.; Grande, B. M.; Karlins, E.; Phung, T.; Richmond, P. A.; Whitford, W.; Wilson Sayres, M. A.

10.1101/346940 — bioinformatics — Posted on 2018-06-14

1372 Low-dose cadmium potentiates lung inflammatory response to 2009 pandemic H1N1 influenza virus in mice

Chandler, J. D.; Hu, X.; Ko, E.; Park, S.; Fernandes, J.; Lee, Y.-T.; Orr, M.; Hao, L.; Smith, M. R.; Nujahr, D.; Uppal, K.; Kang, S.-M.; Jones, D.; Go, Y.-M.

10.1101/346866 — pharmacology and toxicology — Posted on 2018-06-14

1373 Common recruitment of angular gyrus in episodic autobiographical memory and bodily self-consciousness

Brechet, L.; Grivaz, P.; Gauthier, B.; Blanke, O.

10.1101/345991 — neuroscience — Posted on 2018-06-14

1374 New insights into human nostril microbiome from the expanded Human Oral Microbiome Database (eHOMD): a resource for species-level identification of microbiome data from the aerodigestive tract

Fernandez Escapa, I.; Chen, T.; Huang, Y.; Gajare, P.; Dewhirst, F. E.; Lemon, K. P.

10.1101/347013 — microbiology — Posted on 2018-06-14

1375 In Vitro Activities of Daptomycin Combined with Fosfomycin or Rifampin on Planktonic and Adherent Linezolid-resistant Enterococcus faecalis

Zheng, J.-x.; Xiang, S.; Lin, Z.-w.; Qi, G.-b.; Tu, H.-p.; Wu, Y.; Jiang, S.-b.; chen, z.; Deng, Q.; Qu, D.; Yu, Z.-j.

10.1101/345892 — microbiology — Posted on 2018-06-14

1376 In vitro community synergy between bacterial soil isolates can be facilitated by pH stabilisation of the environment

Herschend, J.; Koren, K.; Roder, H. L.; Brejnrod, A. D.; Kühl, M.; Burmolle, M.

10.1101/347039 — microbiology — Posted on 2018-06-14

1377 Influenza A(H1N1)pdm09 M and HA segments sequences from Rio Grande do Sul, Brazil

Matias, F.; Filho, N.; Bisognin, C.; Teixeira, K.; Trevizan, L.; Vieira, P.; Ikuta, N.; Gregianini, T.; da Veiga, A. B.; d'Azevedo, P.

10.1101/347229 — microbiology — Posted on 2018-06-14

1378 Effect of Live Attenuated Influenza Vaccine on Pneumococcal Carriage

Rylance, J.; de Steenhuijsen Piters, W. A.; Pojar, S.; Nikolaou, E.; German, E.; Mitsi, E.; Jochems, S.; Carniel, B.; Solorzano, C.; Reine, J.; Gritzfeld, J.; Chu, M. L. J.; Arp, K.; Hyder-Wright, A. D.; Hill, H.; Hales, C.; Robinson, R.; Lowe, C.; Adler, H.; Zaidi, S.; Connor, V.; Lazarove, L.; Piddock, K.; Wheeler, I.; Smith, E.; Morton, B.; Blakey, J.; Burhan, H.; Koukounari, A.; Wang, D.; Mina, M. J.; Gordon, S. B.; Bogaert, D.; French, N.; Ferreira, D. M.

10.1101/343319 — immunology — Posted on 2018-06-14

1379 Ecology, Not Distance, Explains Community Composition in Parasites of Sky-Island Audubon’s Warblers

Williamson, J. L.; Wolf, C. J.; Barrow, L. N.; Baumann, M. J.; Galen, S. C.; Schmitt, C. J.; Schmitt, D. C.; Winter, A. S.; Witt, C. C.

10.1101/346627 — ecology — Posted on 2018-06-14

1380 Bayesian inference of ancestral dates on bacterial phylogenetic trees

Didelot, X.; Croucher, N. J.; Bentley, S. D.; Harris, S. R.; Wilson, D. J.

10.1101/347385 — bioinformatics — Posted on 2018-06-14

1381 Transfer learning with deep convolutional neural network for classifying cellular morphological changes

Kensert, A.; Harrison, P. J.; Spjuth, O.

10.1101/345728 — bioinformatics — Posted on 2018-06-14

1382 Optimally designed vs intuition-driven inputs: the study case of promoter activity modelling

Bandiera, L.; Kothamachu, V. B.; Balsa-Canto, E.; Swain, P. S.; Menolascina, F.

10.1101/346379 — bioengineering — Posted on 2018-06-14

1383 Neuronal Cells Confinement by Micropatterned Cluster-Assembled Dots with Mechanotransductive Nanotopography

Schulte, C.; Lamanna, J.; Moro, A. S.; Piazzoni, C.; Borghi, F.; Chighizola, M.; Ortoleva, S.; Racchetti, G.; Lenardi, C.; Podesta, A.; Malgaroli, A.; Milani, P.

10.1101/347245 — bioengineering — Posted on 2018-06-14

1384 Computation of history-dependent mechanical damage of axonal fiber tracts in the brain: towards tracking sub-concussive and occupational damage to the brain

Gerber, J. I.; Garimella, H. T.; Kraft, R. H.

10.1101/346700 — bioengineering — Posted on 2018-06-14

1385 Metastable brain waves

Roberts, J. A.; Gollo, L. L.; Abeysuriya, R.; Roberts, G.; Mitchell, P. B.; Woolrich, M. W.; Breakspear, M.

10.1101/347054 — neuroscience — Posted on 2018-06-14

1386 A circuit motif in the songbird basal ganglia for computing predicted performance quality

Chen, R.; Puzerey, P. A.; Roeser, A. C.; Riccelli, T.; Podury, A.; Maher, K.; Farhang, A.; Goldberg, J. H.

10.1101/346841 — neuroscience — Posted on 2018-06-14

1387 The Evolution of White Matter Microstructural Changes After Mild Traumatic Brain Injury: A Longitudinal DTI and NODDI Study

Palacios, E.; Owen, J. P.; Yuh, E. L.; Wang, M. B.; Vassar, M. J.; Ferguson, A. R.; Diaz-Arrastia, R.; Giacino, J. T.; Okonkwo, D. O.; Robertson, C. S.; Stein, M. B.; Temkin, N.; Jain, S.; McCrea, M.; Mac Donald, C. L.; Manley, G. T.; Mukherjee, P.; TRACK-TBI Investigators,

10.1101/345629 — neuroscience — Posted on 2018-06-14

1388 A Data Structure for real-time Aggregation Queries of Big Brain Networks

Ganglberger, F.; Kaczanowska, J.; Haubensak, W.; Buehler, K.

10.1101/346338 — neuroscience — Posted on 2018-06-14

1389 Re-evaluating the salty divide: phylogenetic specificity of transitions between marine and freshwater systems

Paver, S.; Muratore, D. J.; Newton, R. J.; Coleman, M.

10.1101/347021 — microbiology — Posted on 2018-06-14

1390 Direct determination and differentiation of carbapenemases of A. baumannii from uncultured tracheal samples

Venkataraman, S.; CH, S.; S, S.; V, L.; KS, R.

10.1101/347047 — microbiology — Posted on 2018-06-14

1391 A matrix protein acts as a cue to preserve collective motility of B. subtilis biofilm cells

Steinberg, N.; Doron, S.; Jain, R.; Rosenberg, G.; van Teeffelen, S.; Kolodkin-Gal, I.

10.1101/346494 — microbiology — Posted on 2018-06-14

1392 Fine Specificity Epitope Analysis by HX-MS Identifies Contact Points on Ricin Toxin Recognized by Protective Monoclonal Antibodies

Van Slyke, G.; Angalakurthi, S. K.; Toth, R. T.; Vance, D. J.; Rong, Y.; Ehrbar, D.; Shi, Y.; Middaught, C. R.; Volkin, D.; Weis, D.; Mantis, N.

10.1101/345561 — immunology — Posted on 2018-06-14

1393 Maximum likelihood estimation of fitness components in experimental evolution

Liu, J.; Champer, J.; Liu, C.; Chung, J.; Reeves, R.; Luthra, A.; Lee, Y. L.; Clark, A. G.; Messer, P. W.

10.1101/345660 — evolutionary biology — Posted on 2018-06-14

1394 Testing the Red Queen hypothesis on de novo new genes - Run or die in the evolution of new microRNAs

Zhao, Y.; Yang, H.; Lin, P.; Liufu, Z.; Lu, G.-A.; Xu, J.; Tang, T.; Wen, H.; Wu, C.-I.

10.1101/345769 — evolutionary biology — Posted on 2018-06-14

1395 Coevolution of structural variation and optimization in sound systems of human language

Zhang, M.-H.; Gong, T.

10.1101/346965 — evolutionary biology — Posted on 2018-06-14

1396 Inferring time-dependent migration and coalescence patterns from genetic sequence and predictor data in structured populations

Mueller, N. F.; Dudas, G.; Stadler, T.

10.1101/342329 — evolutionary biology — Posted on 2018-06-14

1397 A metapopulation model of the spread of the Devil Facial Tumour Disease predicts the long term collapse of its host but not its extinction

Siska, V.; Eriksson, A.; Mehlig, B.; Manica, A.

10.1101/347062 — ecology — Posted on 2018-06-14

1398 Analysing progress of SDG 6 in India: Past, Present, and Future

Roy, A.; Pramanick, K.

10.1101/344184 — ecology — Posted on 2018-06-14

1399 Glucose increases the lifespan of post-reproductive C. elegans independently of FOXO

Wang, L.; Beaudoin-Chabot, C.; Thibault, G.

10.1101/347435 — cell biology — Posted on 2018-06-14

1400 A Statistical Model of Cell Wall Dynamics during Expansive Growth

Lalitha Sridhar, S.; Ortega, J. K. E.; Vernerey, F.

10.1101/346924 — biophysics — Posted on 2018-06-14

1401 A multilevel statistical toolkit to study animal social networks: Animal Network Toolkit (ANT) R package

Sosa, S.; Puga-Gonzalez, I.; Hu Feng, H.; Zhang, P.; Xiaohua, X.; Sueur, C.

10.1101/347005 — bioinformatics — Posted on 2018-06-14

1402 An unexpectedly effective Monte Carlo technique for the RNA inverse folding problem

Portela, F.

10.1101/345587 — bioinformatics — Posted on 2018-06-14

1403 Synthetic protein alignments by CCMgen quantify noise in residue-residue contact prediction

Vorberg, S.; Seemayer, S.; Soeding, J.

10.1101/344333 — bioinformatics — Posted on 2018-06-14

1404 Anti-α4β7 therapy targets lymphoid aggregates in the gastrointestinal tract of HIV-1 infected individuals

Uzzan, M.; Tokuyama, M.; Rosenstein, A. K.; Tomescu, C.; SahBandar, I. N.; Ko, H. M.; Leyre, L.; Chokola, A.; Kaplan-Lewis, E.; Rodriguez, G.; Seki, A.; Corley, M. J.; Aberg, J.; La Porte, A.; Park, E.-y.; Ueno, H.; Oikonomou, I.; Doron, I.; Iliev, I. D.; Chen, B. K.; Lui, J.; Schacker, T. W.; Furtado, G. C.; Lira, S. A.; Colombel, J.-F.; Horowitz, A.; Lim, J. K.; Chomont, N.; Montaner, L. J.; Ndhlovu, L. C.; Mehandru, S.

10.1101/346684 — immunology — Posted on 2018-06-14

1405 NFAT5 participates in Inducible Nitric Oxide Synthase activation by hypoxia in MEF cells.

Serman, Y.; Fuentealba, R. A.; Pasten, C.; Rocco, J.; Ko, B.; Carrion, F.; Irarrazabal, C. E.

10.1101/347302 — physiology — Posted on 2018-06-14

1406 Short Report Bat trypanosomatids (first report of Trypanosoma wauwau) in Triangulo Mineiro, Brazil

de Oliveira Pegorari, P.; Gomez-Hernandez, C.; Gomes Barbosa, C.; Rezende Oliveira, K.; Luiz Pedrosa, A.; David Ramirez, J.; Eduardo Ramirez, L.; none,

10.1101/347146 — physiology — Posted on 2018-06-14

1407 Integration of anatomy ontologies and evo-devo using structured Markov models suggests a new framework for modeling discrete phenotypic traits

Tarasov, S.

10.1101/188672 — evolutionary biology — Posted on 2018-06-14

1408 Unique molecular markers for GC-D-expressing olfactory sensory neurons and chemosensory neurons of the Grueneberg ganglion

Huang, Z.; Zimmerman, A. D.; Munger, S. D.

10.1101/346502 — neuroscience — Posted on 2018-06-14

1409 Comprehensive screening shows that mutations in the known syndromic genes are rare in individuals presenting with hyperinsulinaemic hypoglycaemia

Laver, T. W.; Wakeling, M. N.; Hua, J. H. Y.; Houghton, J. A.; Hussain, K.; Ellard, S.; Flanagan, S. E.

10.1101/346189 — genetics — Posted on 2018-06-14

1410 Real-time cryo-EM data pre-processing with Warp

Tegunov, D.; Cramer, P.

10.1101/338558 — biophysics — Posted on 2018-06-14

1411 LncRNA Spehd regulates hematopoietic stem cells and progenitors and is required for multilineage differentiation

Delas, M. J.; Jackson, B. T.; Kovacevic, T.; Vangelisti, S.; Munera Maravilla, E.; Wild, S. A.; Stork, E. M.; Erard, N.; Knott, S. R.; Hannon, G. J.

10.1101/340034 — molecular biology — Posted on 2018-06-14

1412 Outflanking Immunodominance to Target Subdominant Broadly Neutralizing Epitopes

Angeletti, D.; Kosik, I.; Yewdell, W. T.; Boudreau, C. M.; Mallajosyula, V. V.; Chambers, M.; Prabhakaran, M.; Hickman, H. D.; McDermott, A. B.; Alter, G.; Chaudhuri, J.; Yewdell, J. W.

10.1101/346437 — immunology — Posted on 2018-06-14

1413 Determinants of base-pair substitution patterns revealed by whole-genome sequencing of DNA mismatch repair defective Escherichia coli

Foster, P. L.; Niccum, B. A.; Popodi, E.; Townes, J. P.; Lee, H.; MohammedIsmail, W.; Tang, H.

10.1101/346874 — genetics — Posted on 2018-06-14

1414 A combinatorial extracellular code tunes the intracellular signaling network activity to distinct cellular responses

Kuchenov, D.; Ziebell, F.; Salopiata, F.; Citir, M.; Klingmueller, U.; Huber, W.; Schultz, C.

10.1101/346957 — cell biology — Posted on 2018-06-14

1415 Is Actin Filament Sliding Responsible for Endoplasmic Reticulum and Golgi Movement?

McKenna, J. F.; Webb, S. E. D.; Kriechbaumer, V.; Hawes, C.

10.1101/347187 — cell biology — Posted on 2018-06-14

1416 Resilience of Atlantic Slippersnail Crepidula fornicata Larvae in the Face of Severe Coastal Acidification

Kriefall, N. G.; Pechenik, J. A.; Pires, A.; Davies, S. W.

10.1101/346825 — molecular biology — Posted on 2018-06-14

1417 Large-scale transcriptome-wide association study identifies new prostate cancer risk regions

Mancuso, N.; Gayther, S.; Gusev, A.; Zheng, W.; Penney, K. L.; the PRACTICAL consortium, ; CRUK, ; BPC3, ; CAPS, ; PEGASUS, ; Kote-Jarai, Z.; Eeles, R.; Freedman, M.; Haiman, C.; Pasaniuc, B.

10.1101/345736 — genetics — Posted on 2018-06-14

1418 Cultural Innovations influence patterns of genetic diversity in Northwestern Amazonia

Arias, L.; Schroeder, R.; Huebner, A.; Barreto, G.; Stoneking, M.; Pakendorf, B.

10.1101/347336 — genetics — Posted on 2018-06-14

1419 Researchers preferentially collaborate with same-gendered colleagues across the life sciences

Holman, L.; Morandin, C.

10.1101/345975 — scientific communication and education — Posted on 2018-06-14

1420 Live Mouse Tracker: real-time behavioral analysis of groups of mice

de Chaumont, F.; Ey, E.; Torquet, N.; Lagache, T.; Dallongeville, S.; Imbert, A.; Legou, T.; Le Sourd, A.-M.; Faure, P.; Bourgeron, T.; Olivo-Marin, J.-C.

10.1101/345132 — animal behavior and cognition — Posted on 2018-06-14

1421 The radial expression of dorsal-ventral patterning genes in placozoans, Trichoplax adhaerens, argues for an oral-aboral axis

DuBuc, T.; Bobkov, Y.; Ryan, J. F.; Martindale, M.

10.1101/345777 — developmental biology — Posted on 2018-06-14

1422 Mutations in nucleoporin NUP88 cause lethal fetal akinesia deformation sequence

10.1101/347179 — cell biology — Posted on 2018-06-14

1423 GONST2 transports GDP-Mannose for sphingolipid glycosylation in the Golgi apparatus of Arabidopsis

Jing, B.; Ishikawa, T.; Soltis, N.; Inada, N.; Liang, Y.; Murawska, G.; Andeberhan, F.; pidatala, v.; Yu, X.; Baidoo, E.; Kawai-Yamada, M.; Loque, D.; Kliebenstein, D.; Dupree, P.; Mortimer, J.

10.1101/346775 — plant biology — Posted on 2018-06-14

1424 Mononuclear cell dynamics in M. tuberculosis infection provide opportunities for therapeutic intervention

Norris, B.; Ernst, J. D.

10.1101/347294 — immunology — Posted on 2018-06-14

1425 Representational structure or task structure? Bias in neural representational similarity analysis and a Bayesian method for reducing bias

Cai, M. B.; Schuck, N. W.; Pillow, J. W.; Niv, Y.

10.1101/347260 — neuroscience — Posted on 2018-06-14

1426 A novel green approach for treatment of immature Schistosomiasis Mansoni infection in mice; Arabic gum (Acacia Senegal) antischistosomal properties

selem, r.; Rashed, S.; Younis, M.; Hussien, B.; Saffeyeldin Mohamed, F.; Elmohamady, A.; EL-kholy, A.; Rashed, G.; Kishik, S.; Moharm, A.; Nageeb, M.; Kardoush, M. I.

10.1101/347278 — microbiology — Posted on 2018-06-14

1427 The C. difficile clnRAB operon initiates adaptations to the host environment in response to LL-37

Woods, E. C.; Edwards, A. N.; McBride, S. M.

10.1101/347286 — microbiology — Posted on 2018-06-14

1428 Spike burst-pause dynamics of Purkinje cells regulate sensorimotor adaptation

Luque, N. R.; Naveros, F.; Carrillo, R. R.; Ros, E.; Arleo, A.

10.1101/347252 — neuroscience — Posted on 2018-06-14

1429 Facility delivery and postnatal care services use among mothers who attended four or more antenatal care visits in Ethiopia: further analysis of the 2016 Demographic and Health Survey

Fekadu, G. A.; Getahun, F. A.; Kidanie, S. A.

10.1101/347153 — epidemiology — Posted on 2018-06-14

1430 Attitudes, Perceptions and Barriers to Research and Publishing among Research and Teaching Staff: A Case Study

Okoduwa, S. I. R.; Abe, J. O.; Samuel, B. I.; Chris, A.; Oladimeji, R. A.; Idowu, O. O.; Okoduwa, U. J.

10.1101/347112 — scientific communication and education — Posted on 2018-06-14

1431 High-fat diet suppresses the positive effect of creatine supplementation on skeletal muscle function by reducing protein expression of IGF-PI3K-AKT-mTOR pathway

Ferretti, R.; Moura, E. G.; dos Santos, V. C.; Caldeira, E. J.; Conte, M.; Matsumura, C. Y.; Pertille, A.; Mosqueira, M.; N.A.,

10.1101/347120 — physiology — Posted on 2018-06-14

1432 Measures of Possible Allostatic Load in Comorbid Cocaine and Alcohol use Disorder: Brain White Matter Integrity, Telomere Length, and Anti-Saccade Performance

Lane, S. D.; Tannous, J.; Mwangi, B.; Hasan, K.; Narayana, P.; Steinberg, J.; Walss-Bass, C.; Moeller, F. G.; Schmitz, J.

10.1101/347138 — neuroscience — Posted on 2018-06-14

1433 Evaluating predictive biomarkers for a binary outcome with linear versus logistic regression - Practical recommendations for the choice of the model

Gola, D.; Hessler, N.; Schwaninger, M.; Ziegler, A.; König, I. R.

10.1101/347096 — epidemiology — Posted on 2018-06-14

1434 Impact of Sexual Transmission to Sex-specific Attack Rates in Zika Epidemics

Barros, A. C.; Santos, K.; Massad, E.; Coelho, F. C.

10.1101/347104 — epidemiology — Posted on 2018-06-14

1435 Investigating Cultural Aspects in the Fundamental Diagram using Convolutional Neural Networks

Migon Favaretto, R.; Rosa dos Santos, R.; Raupp Musse, S.; Vilanova, F.; Brandelli Costa, A.

10.1101/347070 — neuroscience — Posted on 2018-06-14

1436 Aerobic removal of microcystin-LR by a novel native effective bacterial community designated as YFMCD4 isolated from Lake Taihu

Yang, F.; Guo, J.; Huang, F.; Massey, I. Y.; Huang, R.; Ding, P.; Zeng, W.

10.1101/347088 — ecology — Posted on 2018-06-14

1437 Sensitive periods for white matter plasticity in human

Yeatman, J. D.; Huber, E.

10.1101/346759 — neuroscience — Posted on 2018-06-13

1438 Recombination between co-infecting herpesviruses occurs where replication compartments coales

Tomer, E.; Cohen, E. M.; Drayman, N.; Afriaat, A.; Weitzman, M. D.; Zaritsky, A.; Kobiler, O.

10.1101/345918 — microbiology — Posted on 2018-06-13

1439 Glucose signaling is important for nutrient adaptation during differentiation of pleomorphic African trypanosomes

Qiu, Y.; Milanes, J. E.; Jones, J. A.; Noorai, R. E.; Shankar, V.; Morris, J.

10.1101/346601 — microbiology — Posted on 2018-06-13

1440 Downregulation of the central noradrenergic system by Toxoplasma gondii infection

Alsaady, I.; Tedford, E.; Alsaad, M.; Bristow, G.; Kohli, S.; Murray, M.; Reeves, M.; Vijayabaskar, M. S.; Clapcote, S. J.; Wastling, J.; McConkey, G. A.

10.1101/345900 — microbiology — Posted on 2018-06-14

1441 Muscle Stem Cell Niche Dysregulation in Volumetric Muscle Loss Injury

Anderson, S.; Han, W. M.; Srinivasa, V.; Mohiuddin, M.; Ruehle, M. A.; Moon, A.; Shin, E.; San Emeterio, C. L.; Ogle, M. E.; Botchwey, E. A.; Willett, N. J.; Jang, Y. C.

10.1101/346395 — bioengineering — Posted on 2018-06-13

1442 Robust and conserved stochastic self-assembly mechanism for dynamic ParB-parS partition complexes on bacterial chromosomes and plasmids

Diaz, R. E.; Sanchez, A.; Rech, J.; Labourdette, D.; Dorignac, J.; Geniet, F.; Palmeri, J.; Parmeggiani, A.; Boudsocq, F.; Anton Leberre, V.; Walter, J.-C.; Bouet, J.-Y.

10.1101/345066 — systems biology — Posted on 2018-06-13

1443 White matter microstructural properties in bipolar disorder and its relationship to the spatial distribution of lithium in the brain

Necus, J.; Sinha, N.; Smith, F. E.; Thelwall, P. E.; Flowers, C. J.; Taylor, P. N.; Blamire, A. M.; Cousins, D. A.; Wang, Y.

10.1101/346528 — neuroscience — Posted on 2018-06-13

1444 NMDA spikes mediate amplification of odor pathway information in the piriform cortex

Kumar, A.; Schiff, O.; Barkai, E.; Mel, B. W.; Poleg-Polsky, A.; Schiller, J.

10.1101/346791 — neuroscience — Posted on 2018-06-13

1445 Transcriptome Analysis of Bael (Aegle marmelos L.) a Member of Family Rutaceae

Kaushik, P.; Kumar, S.

10.1101/346403 — genomics — Posted on 2018-06-13

1446 Mapping the ligand binding landscape

Dickson, A.

10.1101/346817 — biophysics — Posted on 2018-06-13

1447 Network-guided Discovery of Influenza Virus Replication Host Factors

Ackerman, E. E.; Kawakami, E.; Katoh, M.; Watanabe, T.; Watanabe, S.; Tomita, Y.; Lopes, T. J. S.; Matsuoka, Y.; Kitano, H.; Shoemaker, J. E.; Kawaoka, Y.

10.1101/344861 — systems biology — Posted on 2018-06-13

1448 The first principle of neural circuit and the general Circuit-Probability theory

Wang, H.; Wang, J.; Thow, X. Y.; Lee, C.

10.1101/343905 — neuroscience — Posted on 2018-06-13

1449 Populational Super-Resolution Sparse M/EEG Sources and Connectivity Estimation

Gonzalez-Moreira, E.; Paz-Linares, D.; Martinez-Montes, E.; Valdes-Hernandez, P.; Bosch-Bayard, J.; Bringas-Vega, M. L.; Valdes-Sosa, P.

10.1101/346569 — neuroscience — Posted on 2018-06-13

1450 Carriage of Supernumerary Sex Chromosomes Decreases the Volume and Alters the Shape of Limbic Structures.

Nadig, A.; Reardon, P. K.; Seidlitz, J.; McDermott, C.; Blumenthal, J.; Clasen, L. S.; Lalonde, F.; Lerch, J.; Chakravarty, M. M.; Raznahan, A.

10.1101/346767 — neuroscience — Posted on 2018-06-13

1451 Rif1 inhibits replication fork progression and controls DNA copy number in Drosophila

Munden, A.; Rong, Z.; Gangula, R.; Mallal, S.; Nordman, J. T.

10.1101/346650 — molecular biology — Posted on 2018-06-13

1452 Computer Simulations of the Humoral Immune System Reveal How Imprinting Can Affect Responses to Influenza HA Stalk with Implications for the Design of Universal Vaccines

Anderson, C. S.; Sangster, M. Y.; Yang, H.; Chaudhury, S.; Topham, D. J.

10.1101/346726 — immunology — Posted on 2018-06-13

1453 Interleukin 22 mediates interleukin 23-induced pathology in newborn mice by disrupting the function of intestinal and pancreatic cells

Furtado, G. C.; Chen, L.; Strohmeier, V.; He, Z.; Deshpande, M.; Durum, S. K.; Moran, T. M.; Kraus, T.; Faith, J. J.; Lira, S. A.

10.1101/346577 — immunology — Posted on 2018-06-13

1454 Single-cell Transcriptomic Landscape of Nucleated Cells in Umbilical Cord Blood

Zhao, Y.; Li, X.; Wang, J.; Wan, Z.; Gao, K.; Yi, G.; Wang, X.; Wu, J.; Fan, B.; Zhang, W.; Chen, F.; Yang, H.; Wang, J.; Xu, X.; Li, B.; Liu, S.; Zhao, W.; Hou, Y.; Liu, X.

10.1101/346106 — genomics — Posted on 2018-06-13

1455 Measurement of selective constraint on human gene expression

Glassberg, E. C.; Gao, Z.; Harpak, A.; Lan, X.; Pritchard, J. K.

10.1101/345801 — genomics — Posted on 2018-06-13

1456 Single cell functional genomics reveals the importance of mitochondria in cell-to-cell variation in proliferation, drug resistance and mutation outcome

Lehner, B.; Dhar, R.; Missarova, A.; Carey, L. B.

10.1101/346361 — genomics — Posted on 2018-06-13

1457 Pervasive correlation of molecular evolutionary rates in the tree of life

Tao, Q.; Tamuar, K.; Battistuzzi, F.; Kumar, S.

10.1101/346635 — evolutionary biology — Posted on 2018-06-13

1458 Machine learning to classify animal species in camera trap images: applications in ecology

10.1101/346809 — ecology — Posted on 2018-06-13

1459 Distinct Microbes, Metabolites, and Ecologies Define the Microbiome in Deficient and Proficient Mismatch Repair Colorectal Cancers

Hale, V. L.; Jeraldo, P.; Chen, J.; Mundy, M.; Yao, J.; Priya, S.; Keeney, G.; Lyke, K.; Ridlon, J.; White, B. A.; French, A. J.; Thibodeau, S.; Diener, C.; Resendis-Antonio, O.; Gransee, J.; Dutta, T.; Petterson, X.-M. T.; Blekhman, R.; Boardman, L.; Larson, D.; Nelson, H.; Chia, N.

10.1101/346510 — cancer biology — Posted on 2018-06-13

1460 Influence of activation pattern estimates and statistical significance tests in fMRI decoding analysis

Arco, J. E.; Gonzalez-Garcia, C.; Diaz-Gutierrez, P.; Ramirez, J.; Ruz, M.

10.1101/344549 — bioinformatics — Posted on 2018-06-13

1461 Haplotype assembly of autotetraploid potato using integer linear programming

Siragusa, E.; Finkers, R.; Parida, L.

10.1101/346429 — bioinformatics — Posted on 2018-06-13

1462 Probabilistic variable-length segmentation of protein sequences for discriminative motif mining (DiMotif)and sequence embedding (ProtVecX)

Asgari, E.; McHardy, A.; Mofrad, M. R. K.

10.1101/345843 — bioinformatics — Posted on 2018-06-13

1463 Inducible gene switches with memory in human T cells for cellular immunotherapy

Chakravarti, D.; Caraballo, L. D.; Weinberg, B. H.; Wong, W. W.

10.1101/346783 — synthetic biology — Posted on 2018-06-13

1464 N1 component of event-related potential evoked by simple composite figures in the lateral occipital cortex

Uchiyama, H.; Iwashita, S.; Mitsui, T.

10.1101/345934 — neuroscience — Posted on 2018-06-13

1465 An optimized method for the isolation and the molecular characterization of cerebral microvessels in vivo

Lee, Y.-K.; Smith, H.; Yuan, H.; Ito, A.; Sanchez, T.

10.1101/335224 — neuroscience — Posted on 2018-06-13

1466 Stress-responsive and metabolic gene regulation are altered in low S-adenosylmethionine

Ding, W.; Higgins, D. P.; Yadav, D. K.; Pukkila-Worley, R.; Walker, A. K.

10.1101/346205 — molecular biology — Posted on 2018-06-13

1467 Scavenger: A pipeline for recovery of unaligned reads utilising similarity with aligned reads

Yang, A.; Tang, J. Y. S.; Troup, M.; Ho, J. W. K.

10.1101/345876 — bioinformatics — Posted on 2018-06-13

1468 Poor codon optimality is a signal to degrade transcripts with frameshifts

Schikora Tamarit, M. A.; Carey, L.

10.1101/345595 — genomics — Posted on 2018-06-13

1469 BAP1 deubiquitinase is a potent repressor of fetal hemoglobin biosynthesis

Yu, L.; Jearawiriyapaisarn, N.; Lee, M. P.; Hosoya, T.; Wu, Q.; Myers, G.; Lim, K. C.; Kurita, R.; Nakamura, Y.; Vojtek, A. B.; Rual, J.-F.; Engel, J.

10.1101/346619 — developmental biology — Posted on 2018-06-13

1470 Drosophila IMP regulates Kuzbanian to control the timing of Notch signalling in the follicle cells

Fic, W.; Faria, C.; St Johnston, D.

10.1101/346585 — developmental biology — Posted on 2018-06-13

1471 Effects of Human Sex Chromosome Dosage on Spatial Chromosome Organization

Jowhar, Z. M.; Shachar, S.; Gudla, P. R.; Wangsa, D.; Torres, E.; Russ, J. L.; Pegoraro, G.; Ried, T.; Raznahan, A.; Misteli, T.

10.1101/346742 — cell biology — Posted on 2018-06-13

1472 Prognostic Relevance of CCDC88C (Daple) Transcripts in the Peripheral Blood of Patients with Malignant Melanoma

Dunkel, Y.; Reid, A.; Ear, J.; Aznar, N.; Millward, M.; Gray, E.; Pearce, R.; Ziman, M.; Ghosh, P.

10.1101/346551 — cancer biology — Posted on 2018-06-13

1473 Reciprocal regulation among TRPV1 channels and phosphoinositide 3-kinase in response to nerve growth factor

Stratiievska, A.; Nelson, S.; Senning, E. N.; Lautz, J. D.; Smith, S. E. P.; Gordon, S. E.

10.1101/346718 — biochemistry — Posted on 2018-06-13

1474 Broad applicability of a streamlined Ethyl Cinnamate-based clearing procedure

Masselink, W.; Reumann, D.; Murawala, P.; Pasierbek, P.; Taniguchi, Y.; Knoblich, J. A.; Tanaka, E. M.

10.1101/346247 — developmental biology — Posted on 2018-06-13

1475 ERK1/2-dependent activation of FCHSD2 drives cancer cell-selective regulation of clathrin-mediated endocytosis

Xiao, G.-Y.; Mohanakrishnan, A.; Schmid, S. L.

10.1101/346593 — cell biology — Posted on 2018-06-13

1476 Production of alkanes from CO2 by engineered bacteria

Lehtinen, T.; Virtanen, H.; Santala, S.; Santala, V.

10.1101/346536 — bioengineering — Posted on 2018-06-13

1477 Lysophosphatidic acid produced by Autotaxin acts as an allosteric modulator of its catalytic efficiency

Salgado-Polo, F.; Fish, A.; Matsoukas, M.-T.; Heidebrecht, T.; Keune, W.-J.; Perrakis, A.

10.1101/346288 — biochemistry — Posted on 2018-06-13

1478 Multi-platform discovery of haplotype-resolved structural variation in human genomes

Chaisson, M. J. P.; Sanders, A. D.; Zhao, X.; Malhotra, A.; Porubsky, D.; Rausch, T.; Gardner, E. J.; Rodriguez, O.; Guo, L.; Collins, R. L.; Fan, X.; Wen, J.; Handsaker, R. E.; Fairley, S.; Kronenberg, Z. N.; Kong, X.; Hormozdiari, F.; Lee, D.; Wenger, A. M.; Hastie, A.; Antaki, D.; Audano, P.; Brand, H.; Cantsilieris, S.; Cao, H.; Cerveira, E.; Chen, C.; Chen, X.; Chin, C.-S.; Chong, Z.; Chuang, N. T.; Lambert, C. C.; Church, D. M.; Clarke, L.; Farrell, A.; Flores, J.; Galeev, T.; Gorkin, D.; Gujral, M.; Guryev, V.; Haynes Heaton, W.; Korlach, J.; Kumar, S.; Kwon, J. Y.; Lee, J. E.; Lee, J.;

10.1101/193144 — genomics — Posted on 2018-06-13

1479 Cerebrovascular damages induce lymphatic invasion into brain parenchyma to guide vascular regeneration

Chen, J.; He, J.; Yang, Q.; Zhang, Y.; Zhao, T.; Yang, D.; Luo, L.

10.1101/346007 — developmental biology — Posted on 2018-06-13

1480 Elucidating the functional role of predicted miRNAs in post-transcriptional gene regulation along with symbiosis in Medicago truncatula

Bahadur, R. P.; Roy Chowdhury, M.; Basak, J.

10.1101/346858 — genomics — Posted on 2018-06-13

1481 Resting heart rate and psychopathy: Findings from the Add Health Survey

Kavish, N. A.; Fu, Q.; Vaughn, M.; Qian, Z.; Boutwell, B.

10.1101/205005 — physiology — Posted on 2018-06-13

1482 Pointing Errors in Non-Metric Virtual Environments

Muryy, A.; Glennerster, A.

10.1101/273532 — animal behavior and cognition — Posted on 2018-06-13

1483 Discovery and Evaluation of Biosynthetic Pathwaysfor the Production of Five Methyl Ethyl Ketone Precursors

Tokic, M.; Hadadi, N.; Ataman, M.; Neves, D. S.; Ebert, B. E.; Blank, L. M.; Miskovic, L.; Hatzimanikatis, V.

10.1101/209569 — synthetic biology — Posted on 2018-06-13

1484 Genome-wide rules of nucleosome phasing

Baldi, S.; Jain, D. S.; Harpprecht, L.; Zabel, A.; Scheibe, M.; Butter, F.; Straub, T.; Becker, P. B.

10.1101/093666 — molecular biology — Posted on 2018-06-13

1485 Assigning enzyme sequences to orphan and novel reactions using knowledge of substrate reactive sites

Hadadi, N.; MohamadiPeyhani, H.; Miskovic, L.; Seijo, M.; Hatzimanikatis, V.

10.1101/210039 — bioinformatics — Posted on 2018-06-13

1486 Biased competition in the absence of input bias: predictions from corticostriatal computation

Ardid, S.; Sherfey, J. S.; McCarthy, M. M.; Hass, J.; Pittman-Polletta, B. R.; Kopell, N.

10.1101/258053 — neuroscience — Posted on 2018-06-13

1487 Inferring and validating mechanistic models of neural microcircuits based on spike-train data

Ladenbauer, J.; McKenzie, S.; English, D. F.; Hagens, O.; Ostojic, S.

10.1101/261016 — neuroscience — Posted on 2018-06-13

1488 Why Should Mitochondria Define Species?

Stoeckle, M. Y.; Thaler, D. S.

10.1101/276717 — evolutionary biology — Posted on 2018-06-13

1489 The transcription factor Tfap2e/AP-2ε plays a pivotal role in maintaining the identity of basal vomeronasal sensory neurons

Lin, J. M.; Taroc, E. Z. M.; Frias, J. A.; Prasad, A.; Catizone, A. N.; Sammons, M. A.; Forni, P. E.

10.1101/265280 — developmental biology — Posted on 2018-06-13

1490 RCD1 Coordinates Chloroplastic and Mitochondrial Electron Transfer through Interaction with ANAC Transcription Factors

Shapiguzov, A.; Vainonen, J. P.; Hunter, K.; Tossavainen, H.; Tiwari, A.; Järvi, S.; Hellman, M.; Wybouw, B.; Aarabi, F.; Alseekh, S.; Sipari, N.; Nikkanen, L.; Van Der Kelen, K.; Krasensky-Wrzaczek, J.; Salojärvi, J.; Brosche, M.; Keinänen, M.; Tyystjärvi, E.; Rintamäki, E.; De Rybel, B.; Fernie, A. R.; van Breusegem, F.; Permi, P.; Aro, E.-M.; Wrzaczek, M.; Kangasjärvi, J.

10.1101/327411 — plant biology — Posted on 2018-06-13

1491 A probabilistic interpretation of PID controllers using active inference

Baltieri, M.; Buckley, C. L.

10.1101/284562 — neuroscience — Posted on 2018-06-13

1492 Chorioamnionitis Is a Risk Factor for Intraventricular Hemorrhage in Preterm Infants: A Systematic Review and Meta-Analysis

Villamor-Martinez, E.; Fumagalli, M.; Mohammed Rahim, O. M. M.; Passera, S.; Cavallaro, G.; Degraeuwe, P.; Mosca, F.; Villamor, E.

10.1101/334375 — developmental biology — Posted on 2018-06-13

1493 Deep learning models reveal internal structure and diverse computations in the retina under natural scenes

Maheswaranathan, N.; McIntosh, L. T.; Kastner, D. B.; Melander, J.; Brezovec, L.; Nayebi, A.; Wang, J.; Ganguli, S.; Baccus, S. A.

10.1101/340943 — neuroscience — Posted on 2018-06-13

1494 SUMO-based expression and purification of dermcidin-derived DCD-1L, a human antimicrobial peptide, in Escherichia coli

Mohanraj, U.; Kinnunen, O.; Kaya, M. E.; Aranko, A. S.; Viskari, H.; Linder, M.

10.1101/343418 — molecular biology — Posted on 2018-06-13

1495 Selective single molecule sequencing and assembly of a human Y chromosome of African origin

Kuderna, L. F. K.; Lizano, E.; Julia, E.; Gomez-Garrido, J.; Serres-Armero, A.; Kuhlwilm, M.; Antoni Alandes, R.; Alvarez-Estape, M.; Alioto, T.; Gut, M.; Gut, I.; Heide Schierup, M.; Fornas, O.; Marques-Bonet, T.

10.1101/342667 — genomics — Posted on 2018-06-13

1496 MinION re-sequencing of Giardia genomes and de novo assembly of a new Giardia isolate

Pollo, S. M. J.; Reiling, S.; Wit, J.; Workentine, M.; Guy, R.; Batoff, G. W.; Yee, J.; Dixon, B.; Wasmuth, J. D.

10.1101/343541 — genomics — Posted on 2018-06-13

1497 SSCC: a computational framework for rapid and accurate clustering of large-scale single cell RNA-seq data

Ren, X.; Zheng, L.; Zhang, Z.

10.1101/344242 — bioinformatics — Posted on 2018-06-13

1498 Modulation of voltage-dependent K+ conductances in photoreceptors trades off investment in contrast gain for bandwidth

Heras, F. J. H.; Vähäsöyrinki, M.; Niven, J. E.

10.1101/344325 — neuroscience — Posted on 2018-06-13

1499 An efficient and improved laboratory workflow and tetrapod database for larger scale eDNA studies

Axtner, J.; Crampton-Platt, A.; Hoerig, L. A.; Xu, C. C. Y.; Yu, D. W.; Wilting, A.

10.1101/345082 — molecular biology — Posted on 2018-06-13

1500 Migration, acculturation, and the maintenance of between-group cultural variation

Mesoudi, A.

10.1101/234807 — evolutionary biology — Posted on 2018-06-13

1501 Eight new genomes of organohalide-respiring Dehalococcoides mccartyi reveal evolutionary trends in reductive dehalogenases

Molenda, O.; Tang, S.; Lomheim, L.; Edwards, E. A.

10.1101/345173 — bioinformatics — Posted on 2018-06-13

1502 A resource-rational theory of set size effects in visual working memory

van den Berg, R.; Ma, W. J.

10.1101/151365 — neuroscience — Posted on 2018-06-13

1503 Mapping molecular datasets back to the brain regions they are extracted from: Remembering the native countries of hypothalamic expatriates and refugees

Khan, A. M.; Grant, A. H.; Martinez, A.; Burns, G. A.; Thatcher, B. S.; Anekonda, V. T.; Thompson, B. W.; Roberts, Z. S.; Moralejo, D. H.; Blevins, J. E.

10.1101/307652 — neuroscience — Posted on 2018-06-13

1504 Gene birth contributes to structural disorder encoded by overlapping genes

Willis, S.; Masel, J.

10.1101/229690 — evolutionary biology — Posted on 2018-06-13

1505 Diverse motif ensembles specify non-redundant DNA binding activities of AP-1 family members in macrophages

Fonseca, G. J.; Tao, J.; Westin, E. M.; Duttke, S. H.; Spann, N. J.; Strid, T.; Shen, Z.; Stender, J. D.; Link, V. M.; Benner, C.; Glass, C. K.

10.1101/345835 — genomics — Posted on 2018-06-13

1506 The genomic basis of colour pattern polymorphism in the harlequin ladybird

Gautier, M.; Yamaguchi, J.; Foucaud, J.; Loiseau, A.; Ausset, A.; Facon, B.; Gschloessl, B.; Lagnel, J.; Loire, E.; Parrinello, H.; Severac, D.; Lopez-Roques, C.; Donnadieu, C.; Manno, M.; Berges, H.; Gharbi, K.; Lawson-Handley, L.; Zang, L.-S.; Vogel, H.; Estoup, A.; Prud'homme, B.

10.1101/345942 — evolutionary biology — Posted on 2018-06-13

1507 Selective inhibition of CA IX over CA XII using benzene sulfonamides: Disconnect between CA activity and growth inhibition in breast cancer cells

Mboge, M. Y.; Chen, Z.; Wolff, A.; Mathias, J. V.; Tu, C.; Bozdag, M.; Carta, F.; Supuran, C. T.; McKenna, R.; Frost, S. C.

10.1101/345298 — cancer biology — Posted on 2018-06-13

1508 Predict plant-derived xenomiRs from plant miRNA sequences using random forest and one-dimensional convolutional neural network models

Zhao, Q.; Mao, Q.; Zhao, Z.; Dou, T.; Wang, Z.; Cui, X.; Liu, Y.; Fan, X.

10.1101/345249 — bioinformatics — Posted on 2018-06-13

1509 Assembly of chromosome-scale contigs by efficiently resolving repetitive sequences with long reads

Du, H.; Liang, C.

10.1101/345983 — bioinformatics — Posted on 2018-06-13

1510 CRISPR-SURF: Discovering regulatory elements by deconvolution of CRISPR tiling screen data

Hsu, J. Y.; Fulco, C. P.; Cole, M. A.; Canver, M. C.; Pellin, D.; Sher, F.; Farouni, R.; Clement, K.; Guo, J. A.; Biasco, L.; Orkin, S. H.; Engreitz, J. M.; Lander, E. S.; Joung, J. K.; Bauer, D. E.; Pinello, L.

10.1101/345850 — bioinformatics — Posted on 2018-06-13

1511 SIR proteins create compact heterochromatin fibers

Swygert, S.; Senapati, S.; Bolukbasi, M.; Wolfe, S.; Lindsay, S.; Peterson, C. L.

10.1101/346296 — biochemistry — Posted on 2018-06-13

1512 The relationship between age, neural differentiation, and memory performance

Koen, J. D.; Hauck, N.; Rugg, M. D.

10.1101/345181 — neuroscience — Posted on 2018-06-13

1513 Analysis of the role of Nidogen/entactin in basement membrane assembly and morphogenesis in Drosophila

Martin-Bermudo, M. D.; Dai, J.; Estrada, B.; Jacobs, S.; Sanchez-Sanchez, B.; Tang, J.; Ma, M.; Magadan, P.; Pastor-Pareja, J. C.

10.1101/346270 — developmental biology — Posted on 2018-06-13

1514 The computation of strategic learning in repeated social competitive interactions: Learning sophistication, reward attractor points and strategic asymmetry

Griessinger, T.; Coricelli, G.; Khamassi, M.

10.1101/346155 — neuroscience — Posted on 2018-06-13

1515 Reconstruction of post-synaptic potentials by reverse modeling of local field potentials

yochum, m.; Modolo, J.; Benquet, P.; Wendling, F.

10.1101/346148 — neuroscience — Posted on 2018-06-13

1516 Learning the payoffs and costs of actions

Möller, M.; Bogacz, R.

10.1101/346114 — neuroscience — Posted on 2018-06-13

1517 A framework for translation of genomic responses from mouse models to human inflammatory disease contexts

Brubaker, D. K.; Proctor, E. A.; Haigis, K. M.; Lauffenburger, D. A.

10.1101/346122 — systems biology — Posted on 2018-06-13

1518 Seamless Assembly of Biological Parts into Functional Devices and Higher Order Multi-Device Systems.

Braman, J. C.; Sheffield, P. J.; none,

10.1101/346080 — synthetic biology — Posted on 2018-06-13

1519 Computational evidence of a new allosteric communication pathway between active sites and putative regulatory sites in the alanine racemase of Mycobacterium tuberculosis

Jyothikumar, J.; Chandani, S.; Tangirala, R.

10.1101/346130 — bioinformatics — Posted on 2018-06-13

1520 A comparative analysis of label-free liquid chromatography-mass spectrometry liver proteomic profiles highlights metabolic differences between pig breeds

Bovo, S.; Di Luca, A.; Galimberti, G.; Dall'Olio, S.; Fontanesi, L.

10.1101/346056 — systems biology — Posted on 2018-06-13

1521 The Mechanical of Organic Acids Secreted by Roots of Tartary Buckwheat under the Effects of Low Nitrogen Stress

Chen, W.; Cui, Y.; Yang, Y.; Huangfu, Q.; sun, C.; No,

10.1101/346064 — plant biology — Posted on 2018-06-13

1522 Whole genome sequencing of Neisseria meningitidis W isolates from the Czech Republic recovered in 1984 - 2017

Honskus, M.; Okonji, Z.; Musilek, M.; Kozakova, J.; Krizova, P.

10.1101/346072 — epidemiology — Posted on 2018-06-13

1523 Outcomes of early NIH-funded investigators: Experience of the National Institute of Allergy and Infectious Diseases

Haggerty, P. A.; Fenton, M. J.; N/A,

10.1101/346049 — scientific communication and education — Posted on 2018-06-13

1524 Time dependent response of daunorubicin on cytotoxicity, cell cycle and DNA repair in acute lymphoblastic leukaemia

Al-Aamri, H. M.; Ku, H.; Irving, H.; Tucci, J.; Meehan-Andrews, T.; Bradley, C.

10.1101/346031 — cancer biology — Posted on 2018-06-13

1525 Environmental enrichment in piglet creeps: behavior and productive performance

Sartor, K.; Freitas, B. F.; Souza Granja Barros, J.; Rossi, L. A.

10.1101/346023 — animal behavior and cognition — Posted on 2018-06-13

1526 SAMICOS Determines Mitochondrial Cristae Architecture by Mediating mitochodrial Outer and Inner Membrane Contact

Tang, J.; Zhang, K.; Dong, J.; Yan, C.; Chen, S.; Song, Z.

10.1101/345959 — cell biology — Posted on 2018-06-13

1527 Breaking the “unbreakable” ZIKA virus envelope

Pindi, C.; Chirasani, V. R.; Rahman, M. H.; Ahsan, M.; Revanasiddappa, P. D.; Senapati, S.

10.1101/345884 — biophysics — Posted on 2018-06-13

1528 Attentional Modulation of Macaque Visual Processing Areas

Patel, G. H.; Snyder, L. H.; Corbetta, M.

10.1101/345439 — neuroscience — Posted on 2018-06-12

1529 A synthetic non-histone substrate provides insight into substrate targeting by the Gcn5 HAT and sirtuin HDACs

Rossl, A.; Lin, M.; Downey, M.

10.1101/345637 — molecular biology — Posted on 2018-06-12

1530 Let’s talk about cardiac T1 mapping

Hafyane, T.; Karakuzu, A.; Duquette, C.; Mongeon, F. P.; Cohen Adad, J.; Jerosch Herold, M.; Friedrich, M. G.; Stikov, N.

10.1101/343079 — biophysics — Posted on 2018-06-12

1531 Getting there and staying there: supporting and enabling persistent human life on Mars using synthetic natural rubber, self-healing materials, and biological batteries.

Acharya, N.; Baker, N.; Bravo, M. K.; Gu, K.; Harken, S.; Herschl, M. H.; Petersen, A.; Pirozzi, I.; Spangle, D.; Sun, G.; Vuong, B.; Averesch, N. J. H.; Fujishima, K.; Kalkus, T. J.; Rogers, K. J. H.; Rothschild, L. J.

10.1101/345496 — synthetic biology — Posted on 2018-06-12

1532 Comparison of stimulus-evoked BOLD responses in human and monkey visual cortex

Patel, G. H.; Cohen, A. L.; Baker, J. T.; Snyder, L. H.; Corbetta, M.

10.1101/345330 — neuroscience — Posted on 2018-06-12

1533 Amot regulates neuronal dendritic tree through Yap1

Rojek, K. O.; Krzemien, J.; Dolezyczek, H.; Boguszewski, P. M.; Kaczmarek, L.; Konopka, W.; Rylski, M.; Jaworski, J.; Holmgren, L.; Proszynski, T. J.

10.1101/345264 — neuroscience — Posted on 2018-06-12

1534 Interaction Modifications Disrupt The Structure And Stability Of Ecological Communities

Terry, J. C.; Morris, R. J.; Bonsall, M. B.

10.1101/345280 — ecology — Posted on 2018-06-12

1535 Impaired hematopoiesis and leukemia development in mice with a \"knock-in\" allele of U2af1(S34F)

Fei, D. L.; Zhen, T.; Durham, B.; Ferrarone, J.; Zhang, T.; Garrett, L.; Yoshimi, A.; Abdel-Wahab, O.; Bradley, R.; Liu, P.; Varmus, H.

10.1101/345538 — cancer biology — Posted on 2018-06-12

1536 Eight new genomes of organohalide-respiring Dehalococcoides mccartyi reveal evolutionary trends in reductive dehalogenase enzymes

Edwards, E. A.; Molenda, O.; Tang, S.; Lomheim, L.

10.1101/345173 — bioinformatics — Posted on 2018-06-12

1537 Identification of candidate master transcription factors within enhancer-centric transcriptional regulatory networks

Federation, A. J.; Polaski, D. R.; Ott, C. J.; Fan, A.; Lin, C. Y.; Bradner, J. E.

10.1101/345413 — systems biology — Posted on 2018-06-12

1538 Segmentation of Glomeruli Within Trichrome Images Using Deep Learning

Kannan, S.; Morgan, L. A.; Cheung, M.; Liang, B.; Lin, C. Q.; Mun, D.; Francis, J. M.; Chitalia, V. C.; Henderson, J. M.; Kolachalama, V. B.

10.1101/345579 — pathology — Posted on 2018-06-12

1539 Motor learning shapes temporal activity in human sensorimotor cortex

Zich, C.; Woolrich, M. W.; Becker, R.; Vidaurre, D.; Scholl, J.; Hinson, E. L.; Josephs, L.; Braeutigam, S.; Quinn, A. J.; Stagg, C. J.

10.1101/345421 — neuroscience — Posted on 2018-06-12

1540 Topographic Organization of Extraoccipital Visual Processing Areas in the Macaque

Patel, G. H.; Snyder, L. H.; Corbetta, M.

10.1101/345363 — neuroscience — Posted on 2018-06-12

1541 Live calcium imaging of Aedes aegypti neuronal tissues reveals differential importance of chemosensory systems for life-history-specific foraging strategies

Bui, M.; Shyong, J.; Lutz, E. K.; Yang, T.; Li, M.; Truong, K.; Arvidson, R.; Buchman, A.; Riffell, J. A.; Akbari, O. S.

10.1101/345389 — neuroscience — Posted on 2018-06-12

1542 Convergent gain and loss of genomic islands drives lifestyle changes in plant-associated bacteria

Melnyk, R. A.; Hossain, S. S.; Haney, C. H.

10.1101/345488 — microbiology — Posted on 2018-06-12

1543 New genetic signals for lung function highlight pathways and pleiotropy, and chronic obstructive pulmonary disease associations across multiple ancestries

Shrine, N.; Guyatt, A. L.; Erzurumluoglu, A. M.; Jackson, V. E.; Hobbs, B. D.; Melbourne, C.; Batini, C.; Fawcett, K. A.; Song, K.; Sakornsakolpat, P.; Li, X.; Boxall, R.; Reeve, N. F.; Obeidat, M.; Zhao, J. H.; Wielscher, M.; Understanding Society Scientific Group, ; Weiss, S.; Kentistou, K. A.; Cook, J. P.; Sun, B. B.; Zhou, J.; Hui, J.; Karrasch, S.; Imboden, M.; Harris, S. E.; Marten, J.; Enroth, S.; Kerr, S. M.; Surakka, I.; Vitart, V.; Lehtimäki, T.; Allen, R. J.; Bakke, P. S.; Beaty, T. H.; Bleecker, E. R.; Bosse, Y.; Brandsma, C.-A.; Chen, Z.; Crapo, J. D.; Danesh, J.; DeMeo,

10.1101/343293 — genomics — Posted on 2018-06-12

1544 MinION re-sequencing of Giardia genomes and de novo assembly of a new Giardia isolate

Pollo, S. M. J.; Reiling, S.; Wit, J.; Workentine, M.; Guy, R.; Yee, J.; Dixon, B.; Wasmuth, J. D.

10.1101/343541 — genomics — Posted on 2018-06-12

1545 Sexual Conflict through Mother’s Curse and Father’s Curse

Agren, J. A.; Munasinghe, M.; Clark, A. G.

10.1101/345611 — evolutionary biology — Posted on 2018-06-12

1546 O-GlcNAc modification of oncogenic transcription factor Sox2 promotes protein stability and regulates self-renewal in pancreatic cancer

Sharma, N.; Gupta, V. K.; Dauer, P.; Kesh, K.; Hadad, R.; Giri, B.; Chandra, A.; Dudeja, V.; Slawson, C.; Banerjee, S.; Vickers, S. M.; Saluja, A.; Banerjee, S.

10.1101/345223 — cancer biology — Posted on 2018-06-12

1547 Investigation of protein surface polarity and pH-dependent properties using a new web tool: application to antibodies shows that antibody-antigen interfaces tend to be relatively polar.

Hebditch, M.; Warwicker, J.

10.1101/345231 — bioinformatics — Posted on 2018-06-12

1548 Febrile temperatures increase in vitro antibody affinity for malaria and dengue antigens

Stan, R.; Francoso, K.; Alves, R.; Ferreira, L. C.; Soares, I.; Camargo, M. M. d.

10.1101/345553 — biochemistry — Posted on 2018-06-12

1549 A central component of the N1 event-related brain potential could index the early and automatic inhibition of the actions systematically activated by objects

Touzel, M.; Snidal, C.; Segal, J.; Renoult, L.; Debruille, J. B.

10.1101/341057 — animal behavior and cognition — Posted on 2018-06-12

1550 Natural selection can favor ratchet robustness over mutational robustness

Lan, Y.; Trout, A.; Weinreich, D. M.; Wylie, C. S.

10.1101/121087 — evolutionary biology — Posted on 2018-06-12

1551 Linkage disequilibrium connects genetic records of relatives typed with disjoint genomic marker sets

Kim, J.; Edge, M. D.; Algee-Hewitt, B. F. B.; Li, J. Z.; Rosenberg, N. A.

10.1101/345322 — genetics — Posted on 2018-06-12

1552 Identifying mixed Mycobacterium tuberculosis infection and laboratory cross-contamination during Mycobacterial sequencing programs

Wyllie, D. H.; Robinson, E.; Peto, T. E. A.; Crook, D. W.; Ajileye, A.; Rathod, P.; Allen, R.; Jarrett, L.; Smith, E. G.; Walker, A. S.

10.1101/344853 — microbiology — Posted on 2018-06-12

1553 Interleukin-17 regulates neuron-glial communications, inhibitory synaptic transmission and neuropathic pain after chemotherapy

Luo, H.; Liu, H.-Z.; Luo, X.; Bang, S.; Wang, Z.-L.; Chen, G.; Ji, R. R.; Zhang, Y.-Q.

10.1101/344945 — neuroscience — Posted on 2018-06-12

1554 Heterogeneous timing of asexual cycles in Plasmodium falciparum quantified by extended time-lapse microscopy

Park, H.; Huang, S.; Walzer, K. A.; You, L.; Chi, J.-T. A.; Buchler, N. E.

10.1101/344812 — microbiology — Posted on 2018-06-12

1555 Effects of Short-time Exposure to Atrazine on miRNA Expression Profiles in the Gonad of Common Carp (Cyprinus Carpio)

Wang, F.; Yang, W. q.; Zhao, J. w.; Du, Y. q.; Chang, J. z.

10.1101/345371 — genetics — Posted on 2018-06-12

1556 An introduced crop plant is driving diversification of the virulent bacterial pathogen Erwinia tracheiphila

Shapiro, L. R.; Paulson, J. N.; Arnold, B. J.; Scully, E. D.; Zhaxybayeva, O.; Pierce, N.; Rocha, J.; Klepac-Ceraj, V.; Holton, K.; Kolter, R.

10.1101/345009 — evolutionary biology — Posted on 2018-06-12

1557 Developing a modern data workflow for living data

Yenni, G. M.; Christensen, E. M.; Bledsoe, E. K.; Supp, S. R.; Diaz, R. M.; White, E. P.; Ernest, S. K. M.

10.1101/344804 — ecology — Posted on 2018-06-12

1558 Multiway Canonical Correlation Analysis of Brain Signals

de Cheveigne, A.; di Liberto, G. M.; Arzounian, D.; Wong, D.; Hjortkjaer, J.; Asp Fuglsang, S.; Parra, L. C.

10.1101/344960 — neuroscience — Posted on 2018-06-12

1559 Transfer Learning for Task Adaptation of Brain Lesion Assessment and Prediction of Brain Abnormalities Progression/Regression using Irregularity Age Map in Brain MRI

Rachmadi, M. F.; Valdes Hernandez, M.; Komura, T.

10.1101/345033 — neuroscience — Posted on 2018-06-12

1560 Evaluation of the Luminex ARIES(R) System for the Detection and Quantification of BK virus DNA in Plasma and Serum Samples from Kidney Transplant Recipients

Her, T.; Schutzbank, T. E.

10.1101/344846 — microbiology — Posted on 2018-06-12

1561 Vesicular delivery of the antifungal antibiotics of Lysobacter enzymogenes C3

Meers, P.; Liu, C.; Chen, R.; Bartos, W.; Davis, J.; Dziedzic, N.; Orciuolo, J.; Kutyla, S.; Pozo, M. J.; Mithrananda, D.; Panzera, D.; Wang, S.

10.1101/344838 — microbiology — Posted on 2018-06-12

1562 Species’ range dynamics affect the evolution of spatial variation in plasticity under environmental change

Schmid, M.; Dallo, R.; Guillaume, F.

10.1101/344895 — evolutionary biology — Posted on 2018-06-12

1563 Estimating the value of quarantine: eradicating invasive cane toads from tropical islands

Smart, A. S.; Tingley, R.; Phillips, B. L.

10.1101/344796 — ecology — Posted on 2018-06-12

1564 Serotonergic and catecholaminergic (dopaminergic) oscillations in the reproductive regulation of Japanese quail

Yadav, S.; Chaturvedi, C. M.

10.1101/345017 — animal behavior and cognition — Posted on 2018-06-12

1565 Using composite phenotypes to reveal hidden physiological heterogeneity and model oxygen saturation variation of high altitude acclimatization in a Chinese Han longitudinal cohort

Li, Y.; Wang, Y.; Zhang, M.-H.; Ma, Y.; Wang, K.; Liu, X.; Hao, M.; Sun, C.; Wang, X.; Chen, X.; Zhang, Y.; Duan, W.; Kang, L.; Qiao, B.; Wang, J.; Jin, L.

10.1101/336446 — systems biology — Posted on 2018-06-12

1566 Sex differences in brain structure: An autism twin study on restricted and repetitive behaviors

van't Westeinde, A.; Cauvet, E.; Toro, R.; Kuja-Halkola, R.; Neufeld, J.; Mevel, K.; Bölte, S.

10.1101/334367 — neuroscience — Posted on 2018-06-12

1567 A critical assessment of single-cell transcriptomes sampled following patch-clamp electrophysiology

Tripathy, S.; Toker, L.; Bomkamp, C.; Mancarci, O.; Belmadani, M.; Pavlidis, P.

10.1101/298133 — neuroscience — Posted on 2018-06-12

1568 General decapping activators target different subsets of inefficiently translated mRNAs

Jacobson, A.; He, F.; Celik, A.

10.1101/344937 — molecular biology — Posted on 2018-06-12

1569 Coherent feedforward regulation of gene expression by Caulobacter σT and GsrN during hyperosmotic stress

Tien, M. Z.; Stein, B. J.; Crosson, S.

10.1101/344820 — microbiology — Posted on 2018-06-12

1570 Model-based assessment of the Role of Uneven Partitioning of Molecular Content on Heterogeneity and Regulation of Differentiation in CD8 T-cell Immune Responses

Girel, S.; Arpin, C.; Marvel, J.; Gandrillon, O.; Crauste, F.

10.1101/345165 — immunology — Posted on 2018-06-12

1571 Long-read metagenomics reveals cryptic and abundant marine viruses

Warwick-Dugdale, J.; Solonenko, N.; Moore, K.; Chittick, L.; Gregory, A. C.; Allen, M. J.; Sullivan, M. B.; Temperton, B.

10.1101/345041 — genomics — Posted on 2018-06-12

1572 A Fully-Adjusted Two-Stage Procedure for Rank Normalization in Genetic Association Studies

Sofer, T.; Zheng, X.; Gogarten, S. M.; Laurie, C. A.; Grinde, K.; Shaffer, J. R.; Shungin, D.; O'Connell, J. R.; Durazo-Arvizo, R. A.; Raffield, L.; Lange, L.; Musani, S.; Vasan, R. S.; Cupples, L. A.; Reiner, A. P.; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, ; Laurie, C. C.; Rice, K. M.

10.1101/344770 — genetics — Posted on 2018-06-12

1573 Modelling the nuclear envelope of HeLa cells

Karabag, C.; Jones, M. L.; Peddie, C. J.; Weston, A. E.; Collinson, L. M.; Reyes-Aldasoro, C. C.

10.1101/344986 — cancer biology — Posted on 2018-06-12

1574 Deep clustering of protein folding simulations

Bhowmik, D.; Young, M. T.; Gao, S.; Ramanathan, A.

10.1101/339879 — biophysics — Posted on 2018-06-12

1575 BALLI: Bartlett-Adjusted Likelihood-based LInear Model Approach for Identifying Differentially Expressed Gene with RNA-seq Data

Park, K.; Won, S.; An, J.; Gim, J.

10.1101/344929 — bioinformatics — Posted on 2018-06-12

1576 Interrupted reprogramming into induced pluripotent stem cells does not rejuvenate human mesenchymal stromal cells

Goebel, C.; Goetzke, R.; Eggermann, T.; Wagner, W.

10.1101/344903 — cell biology — Posted on 2018-06-12

1577 The heterochromatin landscape in migrating cells and the importance of H3K27me3 for migration-associated transcriptional changes

Segal, T.; Salmon-Divon, M.; Gerlitz, G.

10.1101/344887 — cell biology — Posted on 2018-06-12

1578 Structures of the heart specific SERCA2a Ca2+-ATPase

Nissen, P.; De Raeymaecker, J.; Kotsubei, A.; Drachmann, N. D.; Derua, R.; Smaardijk, S.; Andersen, J. L.; Vandecaetsbeek, I.; Chen, J.; De Mayer, M.; Waelkens, E.; Olesen, C. E.; Vangheluwe, P.

10.1101/344911 — biochemistry — Posted on 2018-06-12

1579 Synergistic Recruitment of UbcH7~Ub and Phosphorylated Ubl Domain Triggers Parkin Activation

Condos, T. E.; Dunkerley, K. M.; Freeman, E. A.; Barber, K.; Aguirre, J.; Chaugule, V.; Xiao, Y.; Konermann, L.; Walden, H.; Shaw, G. S.

10.1101/344952 — biochemistry — Posted on 2018-06-12

1580 A state representation for reinforcement learning and decision-making in the orbitofrontal cortex

Schuck, N. W.; Wilson, R. C.; Niv, Y.

10.1101/210591 — neuroscience — Posted on 2018-06-12

1581 The genome of the biting midge Culicoides sonorensis and gene expression analyses of vector competence for Bluetongue virus

Morales Hojas, R.; Hinsley, M.; Armean, I. M.; Silk, R.; Harrup, L. E.; Gonzalez-Uriarte, A.; Veronesi, E.; Campbell, L.; Nayduch, D.; Saski, C.; Tabachnick, W. J.; Kersey, P.; Carpenter, S.; Fife, M.

10.1101/249482 — genomics — Posted on 2018-06-12

1582 Nonlinear averaging of thermal experience predicts population growth rates in a thermally variable environment

Bernhardt, J. R.; Sunday, J. M.; Thompson, P. L.; O'Connor, M. I.

10.1101/247908 — ecology — Posted on 2018-06-12

1583 Variability in the timing of a β-catenin pulse biases a stochastic cell fate decision in C. elegans

Kroll, J. R.; Tsiaxiras, J.; van Zon, J. S.

10.1101/245225 — developmental biology — Posted on 2018-06-12

1584 Porter 5: fast, state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classes

Torrisi, M.; Kaleel, M.; Pollastri, G.

10.1101/289033 — bioinformatics — Posted on 2018-06-12

1585 Learning from mistakes: Accurate prediction of cell type-specific transcription factor binding

Keilwagen, J.; Posch, S.; Grau, J.

10.1101/230011 — bioinformatics — Posted on 2018-06-12

1586 High-throughput mapping of meiotic crossover and chromosome mis-segregation events in interspecific hybrid mice

Yin, Y.; Jiang, Y.; Berletch, J. B.; Disteche, C. M.; Noble, W. S.; Steemers, F. J.; Adey, A. C.; Shendure, J. A.

10.1101/338053 — genetics — Posted on 2018-06-12

1587 A synthetic system that combats fungal infections

Tscherner, M.; Giessen, T. W.; Markey, L.; Kumamoto, C. A.; Silver, P. A.

10.1101/342287 — synthetic biology — Posted on 2018-06-12

1588 Deep learning models reveal internal structure and diverse computations in the retina under natural scenes

Maheswaranathan, N.; McIntosh, L. T.; Kastner, D. B.; Melander, J.; Brezovec, L.; Nayebi, A.; Wang, J.; Ganguli, S.; Baccus, S. A.

10.1101/340943 — neuroscience — Posted on 2018-06-12

1589 Saracatinib and Dasatinib Fail To Prevent Heritable Pulmonary Arterial Hypertension

D'Amico, R.; Gladson, S.; Shay, S.; Copeland, C.; West, J.

10.1101/345447 — molecular biology — Posted on 2018-06-12

1590 Genetic variation in Pan species is shaped by demographic history and underlies lineage-specific functions

Han, S.; Andres, A. M.; Marques-Bonet, T.; Kuhlwilm, M.

10.1101/280016 — genomics — Posted on 2018-06-12

1591 Whole-genome sequences suggest long term declines of spotted owl (Strix occidentalis) (Aves: Strigiformes: Strigidae) populations in California

Hanna, Z. R.; Dumbacher, J. P.; Bowie, R. C. K.; Wall, J. D.

10.1101/343434 — genomics — Posted on 2018-06-12

1592 Genes associated with neuropsychiatric disease increase vulnerability to abnormal deep grey matter development

Cullen, H.; Krishnan, M.; Selzam, S.; Ball, G.; Visconti, A.; Saxena, A.; Counsell, S.; Hajnal, J.; Breen, G.; Plomin, R.; Edwards, A. D.

10.1101/342394 — neuroscience — Posted on 2018-06-12

1593 Competitive tolerance and yield response of maize, cowpea and tomato in mixed culture and pure stand

OLOWOLAJU, E. D.; OKUNLOLA, G. O.; ADELUSI, A. A.

10.1101/344747 — plant biology — Posted on 2018-06-12

1594 Predator odor increases glutamatergic synaptic transmission in the prelimbic cortex via corticotropin-releasing factor receptor 1 signaling

Hwa, L. S.; Pina, M. M.; Neira, S.; Pati, D.; Calloway, R.; Kash, T. L.

10.1101/345157 — neuroscience — Posted on 2018-06-12

1595 Multiplexed calcium imaging of single-synapse activity and astroglial responses in the intact brain

Reynolds, J. P.; Zheng, K.; Rusakov, D. A.

10.1101/344713 — neuroscience — Posted on 2018-06-12

1596 An efficient and improved laboratory workflow and tetrapod database for larger scale eDNA studies

Axtner, J.; Crampton-Platt, A.; Hoerig, L. A.; Xu, C. C. Y.; Yu, D. W.; Wilting, A.

10.1101/345082 — molecular biology — Posted on 2018-06-12

1597 Sensitive information leakage from functional genomics data: Theoretical quantifications & practical file formats for privacy preservation

Gursoy, G.; Harmanci, A.; Green, M.; Navarro, F.; Gerstein, M.

10.1101/345074 — bioinformatics — Posted on 2018-06-12

1598 Engineered resistance to Zika virus in transgenic Ae. aegypti expressing a polycistronic cluster of synthetic miRNAs

Buchman, A.; Gamez, S.; Li, M.; Antoshechkin, I.; Lee, h.-H.; Wang, S.-W.; Chen, C.-H.; Klein, M. J.; Duchmemin, J.-B.; Paradkar, P. N.; Akbari, O. S.

10.1101/344697 — synthetic biology — Posted on 2018-06-12

1599 Five- and Six-armed Brittle Stars Make Different Currents in the Disk

Wakita, D.; Hayase, Y.; Aonuma, H.

10.1101/340471 — physiology — Posted on 2018-06-12

1600 Opioids for breathlessness: Psychological and neural factors influencing variability in response

Abdallah, S. J.; Faull, O. K.; Wanigasekera, V.; Finnegan, S. L.; Jensen, D.; Pattinson, K.

10.1101/344523 — neuroscience — Posted on 2018-06-12

1601 Type III interferon signaling restricts Enterovirus 71 infection of goblet cells

Good, C.; Wells, A.; Coyne, C. B.

10.1101/344531 — microbiology — Posted on 2018-06-12

1602 Conditions for optimal mechanical power generation by a bundle of growing actin filaments

Martiel, J.-L.; Michelot, A.; Boujema-Paterski, R.; Blanchoin, L.; Berro, J.

10.1101/344671 — biophysics — Posted on 2018-06-12

1603 Template-assisted synthesis of adenine-mutagenized cDNA by a retroelement protein complex

Handa, S.; Jiang, Y.; Tao, S.; Foreman, R.; Schinazi, R.; Miller, J. F.; Ghosh, P.

10.1101/344556 — biochemistry — Posted on 2018-06-12

1604 Tissue-specific cis-regulatory divergence implicates a fatty acid elongase necessary for inhibiting interspecies mating in Drosophila

Combs, P. A.; Krupp, J. J.; Khosla, N. M.; Bua, D.; Petrov, D.; Levine, J.; Fraser, H.

10.1101/344754 — systems biology — Posted on 2018-06-12

1605 Designing Genomes using Design-Simulate-Test Cycles

Rees, J.; Chalkley, O.; Purcell, O.; Marucci, L.; Grierson, C.

10.1101/344564 — synthetic biology — Posted on 2018-06-12

1606 A hippocampal model for behavioral time acquisition and fast bidirectional replay of spatio-temporal memory sequences

Matheus Gauy, M.; Lengler, J.; Einarsson, H.; Meier, F.; Weissenberger, F.; Fatih Yanik, M.; Steger, A.

10.1101/343988 — neuroscience — Posted on 2018-06-12

1607 Transiently depleting RNPS1 leads to perdurable changes in alternative splicing

Barbier, J.; Cloutier, A.; Toutant, J.; Durand, M.; Lapointe, E.; Thibault, P.; Chabot, B.

10.1101/344507 — molecular biology — Posted on 2018-06-12

1608 cDeepbind: A context sensitive deep learning model of RNA-protein binding

Gandhi, S.; Lee, L. J.; Delong, A.; Duvenaud, D.; Frey, B.

10.1101/345140 — genomics — Posted on 2018-06-12

1609 Maelstrom Represses Canonical Polymerase II Transcription within Bi-Directional piRNA Clusters in Drosophila melanogaster

Chang, T. H.; Mattei, E.; Gainetdinov, I.; Weng, Z.; Zamore, P.

10.1101/344572 — genetics — Posted on 2018-06-12

1610 Divergent selection and drift shape the genomes of two avian sister species spanning a saline-freshwater ecotone

Walsh, J.; Clucas, G.; MacManes, M.; Thomas, K.; Kovach, A.

10.1101/344614 — evolutionary biology — Posted on 2018-06-12

1611 Cardioprotection by the Mitochondrial Unfolded Protein Response is Mediated by ATF5

Wang, Y. T.; Lim, Y.; McCall, M. N.; Haynes, C. M.; Nehrke, K. W.; Brookes, P. S.

10.1101/344606 — cell biology — Posted on 2018-06-12

1612 Quantifying platelet margination in diabetic blood flow

Chang, H.-Y.; Yazdani, A.; Li, X.; Douglas, K.; Mantzoros, C.; Karniadakis, G.

10.1101/344655 — biophysics — Posted on 2018-06-12

1613 Molecular characterization of beast’s maguey (Agave antillarum Descourt), in the Dominican Republic

Nunez, J. R.; Hodai, I.

10.1101/344259 — plant biology — Posted on 2018-06-12

1614 Dynamic Properties of Simulated Brain Network Models and Empirical Resting State Data

Kashyap, A.; Keilholz, S.

10.1101/344473 — neuroscience — Posted on 2018-06-12

1615 Deletion of the alternative splice variant KChIP4a in midbrain dopamine neurons selectively enhances extinction learning

Costa, K. M.; Roeper, J.

10.1101/344499 — neuroscience — Posted on 2018-06-12

1616 Modulation of voltage-dependent K+ conductances in photoreceptors trades off investment in contrast gain for bandwidth

Heras, F. J. H.; Vähäsöyrinki, M.; Niven, J. E.

10.1101/344325 — neuroscience — Posted on 2018-06-12

1617 Resting state fMRI based target selection for personalized rTMS: stimulation over the left DLPFC temporarily alters the default mode network in healthy subjects

Singh, A.; Erwin-Grabner, T.; Sutcliffe, G.; Antal, A.; Paulus, W.; Goya-Maldonado, R.

10.1101/344390 — neuroscience — Posted on 2018-06-12

1618 Will the Illinois chorus frog (Pseudacris streckeri illinoensis) survive in Arkansas? A case study of a secretive species in need of protection

McCallum, M. L.; Trauth, S. E.

10.1101/338699 — ecology — Posted on 2018-06-12

1619 Targeting BMI1 and MCL1 for Lung Adenocarcinoma Treatment

Lin, E.-H.; Hsu, C.-F.; Jan, Y.-H.; Lin, T.-H.; Chang, H.-Y.; Cheng, C.-M.; Hsu, H.-J.; Chen, W.-W.; Chen, B.-H.; Tsai, H.-F.; Li, J.-J.; Huang, C.-Y.; Chuang, S.-H.; Chang, J.-M.; Hsiao, M.; Wu, C.-W.

10.1101/344275 — cancer biology — Posted on 2018-06-12

1620 Logistic regression analysis of multiple interosseous hand muscle activation using surface electromyography during isometric finger tasks

Yokoyama, M.; Yanagisawa, M.

10.1101/278051 — bioengineering — Posted on 2018-06-12

1621 Biolog phenotype microarray: a tool for the identification of multidrug resistance efflux pumps inducers

Blanco, P.; Corona, F.; Martinez, J. L.

10.1101/344879 — microbiology — Posted on 2018-06-12

1622 Development of environmental DNA surveillance for the threatened crucian carp (Carassius carassius)

Harper, L. R.; Griffiths, N. P.; Lawson Handley, L.; Sayer, C. D.; Read, D. S.; Harper, K. J.; Blackman, R. C.; Li, J.; Hänfling, B.

10.1101/344317 — molecular biology — Posted on 2018-06-12

1623 Co-circulating mumps lineages at multiple geographic scales

Wohl, S.; Metsky, H. C.; Schaffner, S. F.; Piantadosi, A.; Burns, M.; Lewnard, J. A.; Chak, B.; Krasilnikova, L. A.; Siddle, K. J.; Matranga, C. B.; Bankamp, B.; Hennigan, S.; Sabina, B.; Byrne, E. H.; McNall, R. J.; Park, D. J.; Gharib, S.; Fitzgerald, S.; Barriera, P.; Fleming, S.; Lett, S.; Rota, P. A.; Madoff, L. C.; MacInnis, B. L.; Yozwiak, N. L.; Smole, S.; Grad, Y. H.; Sabeti, P. C.

10.1101/343897 — genomics — Posted on 2018-06-12

1624 Discovery of biased orientation of human DNA motif sequences affecting enhancer-promoter interactions and transcription of genes

Osato, N.

10.1101/290825 — bioinformatics — Posted on 2018-06-11

1625 Synchrotron FTIR and Raman spectroscopy provide unique spectral fingerprints for Arabidopsis floral stem vascular tissues

Dinant, S.; Wolff, N.; De Marco, F.; Vilaine, F.; Gissot, L.; Aubry, E.; Sandt, C.; Bellini, C.; Le Hir, R.

10.1101/343343 — plant biology — Posted on 2018-06-11

1626 Complete Disruption of Autism-Susceptibility Genes by Gene-Editing Predominantly Reduces Functional Connectivity of Isogenic Human Neurons

Deneault, E.; White, S. H.; Rodrigues, D. C.; Ross, J.; Faheem, M.; Zaslavsky, K.; Wang, Z.; Alexandrova, R.; Pellecchia, G.; Wei, W.; Piekna, A.; Kaur, G.; Howe, J. L.; Kwan, V.; Thiruvahindrapuram, B.; Walker, S.; Pasceri, P.; Merico, D.; Yuen, R. K.; Singh, K. K.; Ellis, J.; Scherer, S. W.

10.1101/344234 — neuroscience — Posted on 2018-06-11

1627 X-ray structures of human ETB receptor provide mechanistic insight into receptor activation and partial activation

Shihoya, W.; Izume, T.; Inoue, A.; Yamashita, K.; Kadji, F. M. N.; Hirata, K.; Aoki, J.; Nishizawa, T.; Nureki, O.

10.1101/343756 — molecular biology — Posted on 2018-06-11

1628 An extracellular Argonaute protein mediates export of repeat-associated small RNAs into vesicles in parasitic nematodes

Chow, F. W.-N.; Koutsovoulos, G.; Ovando-Vazquez, C.; Laetsch, D. R.; Bermudez-Barrientos, J.; Claycomb, J.; Blaxter, M.; Abreu-Goodger, C.; Buck, A.

10.1101/343772 — molecular biology — Posted on 2018-06-11

1629 Diffusible Signal Factor signaling regulates multiple functions in the opportunistic pathogen Stenotrophomonas maltophilia

An, S.-q.; Tang, J.-l.

10.1101/343590 — microbiology — Posted on 2018-06-11

1630 CRISPRs for strain tracking and its application to microbiota transplantation data analysis

Lam, T. J.; Ye, Y.

10.1101/344358 — bioinformatics — Posted on 2018-06-11

1631 PathCORE-T: identifying and visualizing globally co-occurring pathways in large transcriptomic compendia

Chen, K. M.; Tan, J.; Way, G. P.; Doing, G.; Hogan, D. A.; Greene, C. S.

10.1101/147645 — bioinformatics — Posted on 2018-06-11

1632 Population Temporal Structure Supplements The Rate Code During Sensorimotor Transformations

Jagadisan, U. K.; Gandhi, N. J.

10.1101/132514 — neuroscience — Posted on 2018-06-11

1633 Natural Wolbachia infections are common in the major malaria vectors in Central Africa

Ayala, D.; Akone-Ella, O.; Rahola, N.; Kengne, P.; Ngangue, M. F.; Mezeme, F.; Makanga, B. K.; Costantini, C.; Simard, F.; Prugnolle, F.; Roche, B.; Duron, O.; Paupy, C.

10.1101/343715 — ecology — Posted on 2018-06-11

1634 Mitotic chromosome alignment is required for proper nuclear envelope reassembly

Fonseca, C. L.; Malaby, H. L.; Sepaniac, L. A.; Martin, W.; Byers, C.; Czechanski, A.; Messinger, D.; Tang, M. E.; Ohi, R.; Reinholdt, L. G.; Stumpff, J.

10.1101/343475 — cell biology — Posted on 2018-06-11

1635 Dynamics of spreading microbial swarms and films

Srinivasan, S.; Kaplan, N. C.; Mahadevan, L.

10.1101/344267 — biophysics — Posted on 2018-06-11

1636 clonealign: statistical integration of independent single-cell RNA & DNA-seq from human cancers

Campbell, K. R.; Steif, A.; Laks, E.; Zahn, H.; Lai, D.; McPherson, A.; Farahani, H.; Kabeer, F.; O'Flanagan, C.; Biele, J.; Brimhall, J.; Wang, B.; Walters, P.; IMAXT Consortium, ; Bouchard-Cote, A.; Aparicio, S.; Shah, S. P.

10.1101/344309 — bioinformatics — Posted on 2018-06-11

1637 Fast trial-by-trial fronto-parietal cortical dynamics of conflict detection and context updating in a flanker task

Brydges, C. R.; Barcelo, F.; Nguyen, A. T.; Fox, A. M.

10.1101/336958 — neuroscience — Posted on 2018-06-11

1638 Oxytocin facilitates empathic- and self-embarrassment ratings by attenuating amygdala and anterior insula responses

Geng, Y.; Zhao, W.; Zhou, F.; Ma, X.; Yao, S.; Becker, B.; Kendrick, K.

10.1101/343616 — neuroscience — Posted on 2018-06-11

1639 Fungal adaptation to plant defenses through convergent assembly of metabolic modules

Gluck-Thaler, E.; Vijayakumar, V.; Slot, J.

10.1101/343673 — evolutionary biology — Posted on 2018-06-11

1640 A hybrid mortality prediction model of patients with cavitary pulmonary carcinomas

Saad, M.

10.1101/341156 — bioinformatics — Posted on 2018-06-11

1641 Does being a grateful person increase one’s level of well-being? The mediating role of indebtedness

Bernabe-Valero, G.; Moret-Tatay, C.; Navarro-Sancho, T.

10.1101/344440 — scientific communication and education — Posted on 2018-06-11

1642 Tbx1 represses Mef2c gene expression by inducing histone 3 deacetylation of the anterior heart field enhancer

Pane, L. S.; Fulcoli, F. G.; Cirino, A.; Altomonte, A.; Ferrentino, R.; Bilio, M.; Baldini, A.

10.1101/112144 — developmental biology — Posted on 2018-06-11

1643 ELMER v.2: An R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles

Chedraoui Silva, T.; Coetzee, S. G.; Yao, L.; Gull, N.; Hazelett, D. J.; Noushmehr, H.; Lin, D.-C.; Berman, B. P.

10.1101/148726 — bioinformatics — Posted on 2018-06-11

1644 Maximal growth rate requires minimal metabolic complexity

de Groot, D. H.; van Boxtel, C.; Planque, R.; Bruggeman, F. J.; Teusink, B.

10.1101/167171 — systems biology — Posted on 2018-06-11

1645 Enterococcus faecalis V583 LuxS/AI-2 system is devoid of role in intra-species quorum-sensing but contributes to virulence in a Drosophila host model

Gaspar, F.; Teixeira, N.; Montero, N.; Aleksandrzak-Piekarczyk, T.; Renata, M.; Gonzalez-Zorn, B.; Jacinto, A.; Barreto Crespo, M. T.; Lopes, M. d. F.

10.1101/344176 — microbiology — Posted on 2018-06-11

1646 Scaling read aligners to hundreds of threads on general-purpose processors

Langmead, B.; Wilks, C.; Antonescu, V.; Charles, R.

10.1101/205328 — bioinformatics — Posted on 2018-06-11

1647 Codon usage influences fitness through RNA toxicity

Mittal, P.; Brindle, J.; Stephen, J.; Plotkin, J. B.; Kudla, G.

10.1101/344002 — synthetic biology — Posted on 2018-06-11

1648 Decoding Hierarchical Control of Sequential Behavior in Oscillatory EEG Activity

Mayr, U.; Kikumoto, A.

10.1101/344135 — neuroscience — Posted on 2018-06-11

1649 Optimizing sequential decisions in the drift-diffusion model

Nguyen, K. P.; Josic, K.; Kilpatrick, Z.

10.1101/344028 — neuroscience — Posted on 2018-06-11

1650 Rhamnolipids from Pseudomonas aeruginosa disperse the Biofilms of Sulfate-Reducing Bacteria

Wood, T. L.; Zhu, L.; Miller, J.; Miller, D.; Ying, B.; Wood, T. K.

10.1101/344150 — microbiology — Posted on 2018-06-11

1651 Eco-evolutionary dynamics in metacommunities: ecological inheritance, helping within- and harming between-species

Mullon, C.; Lehmann, L.

10.1101/217570 — ecology — Posted on 2018-06-11

1652 Wolbachia both aids and hampers the performance of spider mites on different host plants

Zele, F.; Santos, J. L.; Godinho, D. P.; Magalhaes, S.

10.1101/344143 — ecology — Posted on 2018-06-11

1653 A subset of UPR-induced transmembrane proteins are prematurely degraded during lipid perturbation

Ng, B. S. H.; Shyu, P. T.; Ho, N.; Chaw, R.; Seah, Y. L.; Thibault, G.

10.1101/178947 — cell biology — Posted on 2018-06-11

1654 Universal transcriptomic signature of age reveals temporal scaling of Caenorhabditis elegans aging trajectories

Tarkhov, A. E.; Alla, R.; Ayyadevara, S.; Pyatnitskiy, M.; Menshikov, L. I.; Shmookler Reis, R. J.; Fedichev, P. O.

10.1101/207647 — systems biology — Posted on 2018-06-11

1655 Microglial and Astrocyte priming in the APP/PS1 model of Alzheimer’s Disease: increased vulnerability to acute inflammation and cognitive deficits

Lopez-Rodriguez, A. B.; Hennessy, E.; Murray, C.; Lewis, A.; de Barra, N.; Fagan, S.; Rooney, M.; Nazmi, A.; Cunningham, C.

10.1101/344218 — neuroscience — Posted on 2018-06-11

1656 Differentiable processing of objects, associations and scenes within the hippocampus

Dalton, M. A.; Zeidman, P.; McCormick, C.; Maguire, E. A.

10.1101/208827 — neuroscience — Posted on 2018-06-11

1657 Detoxification of endogenous serine prevents cell lysis upon glucose depletion in bacteria

Kriner, M. A.; Subramaniam, A.

10.1101/343921 — microbiology — Posted on 2018-06-11

1658 Pou5f3, SoxB1 and Nanog remodel chromatin on High Nucleosome Affinity Regions at Zygotic Genome Activation

Veil, M.; Yampolsky, L.; Gruening, B.; Onichtchouk, D.

10.1101/344168 — developmental biology — Posted on 2018-06-11

1659 Integrated in silico and Drosophila cancer model platform captures previously unappreciated chemicals perturbing a kinase network

Ung, P. M.-U.; Sonoshita, M.; Scopton, A. P.; Dar, A. C.; Cagan, R. L.; Schlessinger, A.

10.1101/344192 — cancer biology — Posted on 2018-06-11

1660 Structural Aspects of Homologous DNA-DNA Interactions Revealed by Partitioning of RIP Mutations

Mazur, A. K.; Gladyshev, E.

10.1101/344036 — biophysics — Posted on 2018-06-11

1661 GLnexus: joint variant calling for large cohort sequencing

Lin, M. F.; Rodeh, O.; Penn, J.; Bai, X.; Krasheninina, O.; Salerno, W. J.; Reid, J. G.

10.1101/343970 — bioinformatics — Posted on 2018-06-11

1662 Data-driven multiscale modeling reveals the role of metabolic coupling for the spatio-temporal growth dynamics of yeast colonies

Intosalmi, J.; Scott, A. C.; Hays, M.; Flann, N.; Yli-Harja, O.; Lahdesmaki, H.; Dudley, A. M.; Skupin, A.

10.1101/344226 — bioinformatics — Posted on 2018-06-11

1663 Liberating links between datasets using lightweight data publishing: an example using plant names and the taxonomic literature

Page, R. D. M.

10.1101/343996 — bioinformatics — Posted on 2018-06-11

1664 SSCC: a computational framework for rapid and accurate clustering of large-scale single cell RNA-seq data

Ren, X.; Zheng, L.; Zhang, Z.

10.1101/344242 — bioinformatics — Posted on 2018-06-11

1665 Large-scale, quantitative protein assays on a high-throughput DNA sequencing chip

Layton, C. J.; McMahon, P. L.; Greenleaf, W. J.

10.1101/342808 — molecular biology — Posted on 2018-06-11

1666 Medaka population genome structure and demographic history described via genotyping-by-sequencing

Katsumura, T.; Oda, S.; Mitani, H.; Oota, H.

10.1101/233411 — evolutionary biology — Posted on 2018-06-11

1667 AP-4 vesicles contribute to spatial control of autophagy via RUSC-dependent peripheral delivery of ATG9A

Davies, A. K.; Itzhak, D. N.; Edgar, J. R.; Archuleta, T. L.; Hirst, J.; Jackson, L. P.; Robinson, M. S.; Borner, G. H. H.

10.1101/235226 — cell biology — Posted on 2018-06-11

1668 Transgenerational cues about local mate competition affect offspring sex ratios in the spider mite Tetranychus urticae

Duncan, A.; Marinosci, C.; Devaux, C.; Lefevre, S.; Magalhaes, S.; Griffin, J.; Valente, A.; Ronce, O.; Olivieri, I.

10.1101/240127 — evolutionary biology — Posted on 2018-06-11

1669 Homeostasis of protein and mRNA concentrations in growing cells

Lin, J.; Amir, A.

10.1101/255950 — biophysics — Posted on 2018-06-11

1670 Sleep structure and quantity are determined by behavioral transition probability in Drosophila melanogaster

Wiggin, T. D.; Goodwin, P. R.; Donelson, N. C.; Liu, C.; Trinh, K.; Sanyal, S.; Griffith, L. C.

10.1101/263301 — neuroscience — Posted on 2018-06-11

1671 Multiple sclerosis-associated changes in the composition and immune functions of spore-forming bacteria

Cekanaviciute, E.; Probstel, A.-K.; Thomann, A.; Runia, T.; Casaccia, P.; Katz Sand, I.; Crabtree, E.; Singh, S.; Morrissey, J.; Barba, P.; Gomez, R.; Knight, R.; Mazmanian, S.; Graves, J.; Cree, B. C. A.; Zamvil, S. S.; Baranzini, S.

10.1101/343558 — immunology — Posted on 2018-06-11

1672 The workings and failings of clustering T-cell receptor beta-chain sequences without a known epitope preference

Meysman, P.; De Neuter, N.; Gielis, S.; Bui Thi, D.; Ogunjimi, B.; Laukens, K.

10.1101/318360 — bioinformatics — Posted on 2018-06-11

1673 Perivascular signals alter global gene expression profile of glioblastoma and response to temozolomide in a gelatin hydrogel

Ngo, M.; Harley, B.

10.1101/273763 — bioengineering — Posted on 2018-06-11

1674 Using the Wax moth larva Galleria mellonella infection model to detect emerging bacterial pathogens

Hernandez, R.; Hesse, E.; Dowling, A.; Coyle, N.; Feil, E.; Gaze, W.; Vos, M.

10.1101/327015 — microbiology — Posted on 2018-06-11

1675 Kinetic sculpting of the seven stripes of the Drosophila even-skipped gene

Berrocal, A.; Lammers, N. C.; Garcia, H. G.; Eisen, M. B.

10.1101/335901 — developmental biology — Posted on 2018-06-11

1676 Real Time PCR for the Evaluation of Treatment Response in Clinical Trials of Adult Chronic Chagas Disease: Usefulness of Serial Blood Sampling and qPCR Replicates.

Parrado, R.; Ramirez, J. C.; de la Barra, A.; Alonso-Vega, C.; Juiz, N. A.; Ortiz, L.; Illanes, D.; Torrico, F.; Gascon, J.; Alves, F.; Flevaud, L.; Garcia, L.; Schijman, A. G.; Ribeiro, I.

10.1101/343244 — microbiology — Posted on 2018-06-11

1677 Deep genome annotation of the opportunistic human pathogen Streptococcus pneumoniae D39

Slager, J.; Aprianto, R.; Veening, J.-W.

10.1101/283663 — microbiology — Posted on 2018-06-11

1678 Crystal structure of the MBD domain of MBD3 in complex with methylated CG DNA

Liu, K.; Lei, M.; Gan, B.; Cheng, H.; Li, Y.; Min, J.

10.1101/338061 — biochemistry — Posted on 2018-06-11

1679 Candida albicans hyphal expansion causes phagosomal membrane damage and luminal alkalinization

Westman, J.; Moran, G.; Mogavero, S.; Hube, B.; Grinstein, S.

10.1101/340315 — cell biology — Posted on 2018-06-11

1680 Parent of origin gene expression in a founder population identifies two new imprinted genes at known imprinted regions

Mozaffari, S. V.; Stein, M. M.; Magnaye, K. M.; Nicolae, D. L.; Ober, C.

10.1101/344457 — genetics — Posted on 2018-06-11

1681 Distinct oncogenes drive distinct genome and epigenome alterations in human mammary epithelial cells

Fonti, C.; Saumet, A.; Abi-Khalil, A.; Orsetti, B.; Jacot, W.; Cleroux, E.; Bender, A.; Dumas, M.; Schmitt, E.; Colinge, J.; Weber, M.; Sardet, C.; du Manoir, S.; Theillet, C.

10.1101/344465 — cancer biology — Posted on 2018-06-11

1682 Functions of farmers’ preferred tree species and their potential carbon stocks in southern Burkina Faso: implications for biocarbon initiatives

Dimobe, K.; Tondoh, J. E.; Weber, J. C.; Bayala, J.; Greenough, K.; Kalinganire, A.

10.1101/344408 — plant biology — Posted on 2018-06-11

1683 Analysis of seven putative Na+/H+ antiporters of Arthrospira platensis NIES-39 using transcription profiling and In-silico studies: an indication towards alkaline pH acclimation

Jangir, M. M.; Bhagvatula, V.; Chowdhury, S.; NA,

10.1101/344416 — molecular biology — Posted on 2018-06-11

1684 Repetition of deliberate self-poisoning in rural Sri Lanka

Pahala Hangidi Gedara, J. P.; Thennakoon, S.; Rajapakse, T.; Abeysinghe, R.; Dawson, A.

10.1101/344424 — epidemiology — Posted on 2018-06-11

1685 Epicatechin modulates stress-resistance in C. elegans via Insulin/IGF-1 signaling pathway

Santos-Buelga, C.; Ayuda-Duran, B.; Gonzalez-Paramas, A. M.; Gonzalez-Manzano, S.; Duenas, M.; Miranda-Vizuete, A.

10.1101/344374 — molecular biology — Posted on 2018-06-11

1686 A hyperactive variant of the Escherichia coli anaerobic transcription factor FNR enhances ionizing radiation resistance

Bruckbauer, S. T.; Trimarco, J. D.; Wood, E. A.; Battista, J. R.; Cox, M. M.

10.1101/344382 — evolutionary biology — Posted on 2018-06-11

1687 Tryptophan recovers sensitivity to cell membrane stress in Saccharomyces cerevisiae

Ikui, A.; Schroeder, L.; Lazarevskiy, P.

10.1101/344366 — cell biology — Posted on 2018-06-11

1688 Spectrum of Neandertal introgression across modern-day humans indicates multiple episodes of human-Neandertal interbreeding

Villanea, F. A.; Schraiber, J.

10.1101/343087 — evolutionary biology — Posted on 2018-06-11

1689 RNA-Seq analysis of compatible and incompatible styles of Pyrus species at the beginning of pollination

Guan, Y.; Li, K.; Wang, Y.; Ma, C.; Qu, H.

10.1101/344044 — plant biology — Posted on 2018-06-11

1690 Thought experiment: Decoding cognitive processes from the fMRI data of one individual

Wegrzyn, M.; Aust, J.; Barnstorf, L.; Gippert, M.; Harms, M.; Hautum, A.; Heidel, S.; Herold, F.; Hommel, S. M.; Knigge, A.-K.; Neu, D.; Peters, D.; Schaefer, M.; Schneider, J.; Vormbrock, R.; Zimmer, S. M.; Woermann, F. G.; Labudda, K.

10.1101/341594 — neuroscience — Posted on 2018-06-11

1691 Improving Corticostriatal Parcellation Through Multilevel Bagging with PyBASC

Nikolaidis, A.; Vogelstein, J.; Bellec, P.; Milham, M.

10.1101/343392 — neuroscience — Posted on 2018-06-11

1692 Weighted Network Density Predicts Range of Latent Variable Model Accuracy

Palmerston, J. B.; She, Q.; Chan, R.

10.1101/343285 — neuroscience — Posted on 2018-06-11

1693 Biological and cultural drivers of oral microbiota in Medieval and Post-Medieval London, UK

Farrer, A. G.; Bekvalac, J.; Redfern, R.; Gully, N.; Dobney, K.; Cooper, A.; Weyrich, L. S.

10.1101/343889 — microbiology — Posted on 2018-06-11

1694 Reliable Multiplex Sequencing with Rare Index Mis-Assignment on DNB-Based NGS Platform

Li, Q.; Zhao, X.; Zhang, W.; Wang, L.; Wang, J.; Xu, D.; Mei, Z.; Liu, Q.; Du, S.; Li, Z.; Liang, X.; Wang, X.; Wei, H.; Liu, P.; Zou, J.; Shen, H.; Chen, A.; Drmanac, S.; Li, L.; Jiang, H.; Zhang, Y.; Wang, J.; Yang, H.; Xu, X.; Drmanac, R.; Jiang, Y.

10.1101/343137 — genomics — Posted on 2018-06-11

1695 New Evidence of the Earliest Domestic Dogs in the Americas

Perri, A.; Widga, C.; Lawler, D.; Martin, T.; Loebel, T.; Farnsworth, K.; Kohn, L.; Buenger, B.

10.1101/343574 — paleontology — Posted on 2018-06-11

1696 Neuronal thresholds and correlations in the peripheral vestibular system during rotation discrimination

Garcia, C.; Liu, S.; Laurens, J.; DeAngelis, G.; Dickman, D.; Angelaki, D.

10.1101/343764 — neuroscience — Posted on 2018-06-11

1697 Projecting social contact matrices to different demographic structures

Arregui, S.; Aleta, A.; Sanz, J.; Moreno, Y.

10.1101/343491 — epidemiology — Posted on 2018-06-11

1698 Comparative sensitivity of the test with tuberculosis recombinant allergen, containing ESAT6-CFP10 protein, and Mantoux test with 2 TU PPD-L in newly diagnosed tuberculosis children and adolescents in Moscow

Slogotskaya, L.; Bogorodskaya, E.; Ivanova, D.; Sevostyanova, T.

10.1101/343665 — epidemiology — Posted on 2018-06-11

1699 Direct immunosensing of avian influenza A virus in whole blood using hybrid nanocomposites

Buozis, J.; Ahmed, S. R.; Chand, R.; Nagy, E.; Neethirajan, S.

10.1101/343376 — bioengineering — Posted on 2018-06-11

1700 A cerebellar role in evidence-guided decision-making

Deverett, B.; Koay, S. A.; Oostland, M.; Wang, S. S.- H.

10.1101/343095 — neuroscience — Posted on 2018-06-11

1701 Comprehensive longitudinal microbiome analysis of the chicken cecum reveals a shift from competitive to environmental drivers and a window of opportunity for Campylobacter

Ijaz, U. Z.; Sivaloganathan, L.; Mckenna, A.; Richmond, A.; Kelly, C.; Linton, M.; Stratakos, A.; Lavery, U.; Elmi, A.; Wren, B. W.; Dorrell, N.; Corcionivoschi, N.; Gundogdu, O.

10.1101/341842 — microbiology — Posted on 2018-06-11

1702 A Novel Compound, ML336, Inhibits VEEV Replication by Interfering with Viral RNA Synthesis.

Skidmore, A. M.; Adcock, R. S.; Lee, J.; Jonsson, C.; Golden, J. E.; Chung, D.-H.

10.1101/343228 — microbiology — Posted on 2018-06-11

1703 Whole-genome analysis of introgression between the spotted owl and barred owl (Strix occidentalis and Strix varia, respectively; Aves: Strigidae) in western North America

Hanna, Z. R.; Dumbacher, J. P.; Bowie, R. C. K.; Henderson, J. B.; Wall, J. D.

10.1101/343202 — genomics — Posted on 2018-06-11

1704 Whole-genome sequences suggest long term declines of spotted owl (Strix occidentalis) (Aves: Strigiformes: Strigidae) populations in California

Hanna, Z. R.; Dumbacher, J. P.; Bowie, R. C. K.; Wall, J. D.

10.1101/343434 — genomics — Posted on 2018-06-11

1705 The systemic activin response to pancreatic cancer: Implications for effective cancer cachexia therapy

Zhong, X.; Pons, M.; Poirier, C.; Jiang, Y.; Liu, J.; Sandusky, G. E.; Liu, Y.; Jiang, G.; Couch, M.; Koniaris, L. G.; Zimmers, T. A.

10.1101/343871 — cancer biology — Posted on 2018-06-11

1706 Bacterial cell lysis: geometry, elasticity, and implications

Wong, F.; Amir, A.

10.1101/343350 — biophysics — Posted on 2018-06-11

1707 G-quadruplex forming sequences in the genome of all known human viruses: a comprehensive guide

Lavezzo, E.; Berselli, M.; Frasson, I.; Perrone, R.; Palu, G.; Brazzale, A.; Richter, S.; Toppo, S.

10.1101/344127 — bioinformatics — Posted on 2018-06-11

1708 Generalization of the minimum covariance determinant algorithm for categorical and mixed data types

Beaton, D.; Sunderland, K. M.; ADNI, ; Levine, B.; Mandzia, J.; Masellis, M.; Swartz, R. H.; Troyer, A. K.; ONDRI, ; Binns, M. A.; Abdi, H.; Strother, S. C.

10.1101/333005 — bioinformatics — Posted on 2018-06-11

1709 Cofactors revisited - predicting the impact of flavoprotein-related diseases on a genome scale

Wegrzyn, A. B.; Stolle, S.; Rienksma, R. A.; Martins dos Santos, V. A. P.; Bakker, B. M.; Suarez-Diez, M.

10.1101/343624 — systems biology — Posted on 2018-06-11

1710 Modeling large fluctuations of thousands of clones during hematopoiesis: the role of stem cell self-renewal and bursty progenitor dynamics in rhesus macaque

Xu, S.; Kim, S.; Chen, I. S. Y.; Chou, T.

10.1101/343160 — systems biology — Posted on 2018-06-11

1711 The macaque anterior cingulate cortex translates counterfactual choice value into actual behavioral change

Fouragnan, E. F.; Chau, B. K.; Folloni, D.; Kolling, N.; Verhagen, L.; Klein-Flugge, M.; Tankelevitch, L.; Papageorgiou, G. K.; Aubry, J.-F.; Sallet, J.; Rushworth, M. F.

10.1101/336917 — neuroscience — Posted on 2018-06-11

1712 Analysis of phage-resistant mechanisms in Staphylococcus aureus SA003 reveals a different binding mechanism for the closely related Twort-like phages phiSA012 and phiSA039

Azam, A. H.; Hoshiga, F.; Takeuchi, I.; Miyanaga, K.; Tanji, Y.

10.1101/339549 — microbiology — Posted on 2018-06-11

1713 Culturing the ubiquitous freshwater actinobacterial acI lineage by supplying a biochemical ‘helper’ catalase

Kim, S.; Kang, I.; Seo, J.-H.; Cho, J.-C.

10.1101/343640 — microbiology — Posted on 2018-06-11

1714 Diverse novel resident Wolbachia strains in Culicine mosquitoes from Madagascar

Jeffries, C. L.; Tantely, L. M.; Raharimalala, F. N.; Hurn, E.; Boyer, S.; Walker, T.

10.1101/335786 — microbiology — Posted on 2018-06-11

1715 Dead or Alive? Molecular life-dead distinction in human stool samples reveals significantly different composition of the microbial community

Perras, A.; Koskinen, K.; Mora, M.; Beck, M.; Wink, L.; Moissl-Eichinger, C.

10.1101/343194 — microbiology — Posted on 2018-06-11

1716 Estimating the overlap between two malaria parasites’ var repertoires

Larremore, D. B.

10.1101/343152 — genomics — Posted on 2018-06-11

1717 Topconfects: a package for confident effect sizes in differential expression analysis provides improved usability ranking genes of interest

Harrison, P. F.; Pattison, A. D.; Powell, D. R.; Beilharz, T. H.

10.1101/343145 — bioinformatics — Posted on 2018-06-11

1718 Application of mechanistic methods to clinical trials in multiple sclerosis: the simvastatin case

Eshaghi, A.; Kievit, R. A.; Prados, F.; Sudre, C.; Nicholas, J.; Cardoso, M. J.; Chan, D.; Nicholas, R.; Ourselin, S.; Greenwood, J.; Thompson, A. J.; Alexander, D. C.; Barkhof, F.; Chataway, J.; Ciccarelli, O.

10.1101/343442 — neuroscience — Posted on 2018-06-11

1719 A single cell-based atlas of human microglial states reveals associations with neurological disorders and histopathological features of the aging brain

Olah, M.; Menon, V.; Habib, N.; Taga, M.; Yung, C.; Cimpean, M.; Khairalla, A.; Dionne, D.; Hopp, S.; Frosch, M. P.; Hyman, B. T.; Beach, T. G.; Sarkis, R.; Cosgrove, G. R.; Helgager, J.; Golden, J. A.; Pennell, P. B.; Schneider, J. A.; Bennett, D. A.; Regev, A.; Elyaman, W.; Bradshaw, E. M.; De Jager, P. L.

10.1101/343780 — neuroscience — Posted on 2018-06-11

1720 Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655

Gao, Y.; Yurkovich, J. T.; Seo, S. W.; Kabimoldayev, I.; Drager, A.; Chen, K.; Sastry, A. V.; Fang, X.; Mih, N.; Yang, L.; Eichner, J.; Cho, B.-K.; Kim, D.; Palsson, B. O.

10.1101/343913 — microbiology — Posted on 2018-06-11

1721 Integrating Host Response and Unbiased Microbe Detection for Lower Respiratory Tract Infection Diagnosis in Critically Ill Adults

Langelier, C.; Kalantar, K. L.; Moazed, F.; Wilson, M. R.; Crawford, E.; Deiss, T.; Belzer, A.; Bolourchi, S.; Caldera, S.; Fung, M.; Jauregui, A.; Malcolm, K.; Lyden, A.; Khan, L.; Vessel, K.; Quan, J.; Zinter, M.; Chiu, C. Y.; Chow, E. D.; Wilson, J.; Miller, S.; Matthay, M. A.; Pollard, K. S.; Christenson, S.; Calfee, C. S.; DeRisi, J. L.

10.1101/341149 — genomics — Posted on 2018-06-11

1722 Identification of Novel Common Breast Cancer Risk Variants in Latinas at the 6q25 Locus

Hoffman, J.; Fejerman, L.; Hu, D.; Hunstman, S.; Li, M.; John, E.; Torres-Mejia, G.; Kushi, L.; Ding, Y. C.; Weitzel, J.; Neuhausen, S.; Lott, P.; COLUMBUS Consortium, ; Echeverry, M.; Carvajal-Carmona, L.; Burchard, E.; Eng, C.; Long, J.; Zheng, W.; Olopade, O.; Huo, D.; Haiman, C.; Ziv, E.

10.1101/343806 — genetics — Posted on 2018-06-11

1723 Unleashing meiotic crossovers in crops

Mieulet, D.; aubert, g.; bres, c.; Klein, a.; Droc, g.; Vieille, e.; rond-coissieux, C.; le signor, c.; Sanchez, m.; Dalmais, M.; mauxion, j.-p.; rothan, c.; guiderdoni, e.; mercier, r.

10.1101/343509 — genetics — Posted on 2018-06-11

1724 The tempo of linked selection: emergence of a heterogeneous genomic landscape during a recent radiation of monkeyflowers

Stankowski, S.; Chase, M. A.; Fuiten, A. M.; Ralph, P. L.; Streisfeld, M. A.

10.1101/342352 — evolutionary biology — Posted on 2018-06-11

1725 The evolutionary potential of diet-dependent effects on lifespan and fecundity in a multi-parental population of Drosophila melanogaster

Ng'oma, E.; Fidelis, W.; Middleton, K.; King, E. G.

10.1101/343947 — evolutionary biology — Posted on 2018-06-11

1726 The Global State of Genome Editing

Siwo, G. H.

10.1101/341198 — genomics — Posted on 2018-06-11

1727 Role of biofilm-specific antibiotic resistance genes PA0756-0757, PA5033 and PA2070 in Pseudomonas aeruginosa

Manohar, P.; Shanthini, T.; Philip, R. A.; Ramkumar, S.; Kale, M.; Ramesh, N.

10.1101/341826 — microbiology — Posted on 2018-06-11

1728 An Atlas of Human and Murine Genetic Influences on Osteoporosis

Morris, J. A.; Kemp, J. P.; Youlten, S. E.; Laurent, L.; Logan, J. G.; Chai, R.; Vulpescu, N. A.; Forgetta, V.; Kleinman, A.; Mohanty, S.; Sergio, C. M.; Quinn, J.; Nguyen-Yamamoto, L.; Luco, A.-L.; Vijay, J.; Simon, M.-M.; Pramatarova, A.; Medina-Gomez, C.; Trajanoska, K.; Ghirardello, E. J.; Butterfield, N. C.; Curry, K. F.; Leitch, V. D.; Sparkes, P. C.; Adoum, A.-T.; Mannan, N. S.; Komla-Ebri, D.; Pollard, A. S.; Dewhurst, H. F.; Hassell, T.; Beltejar, M.-J. G.; Adams, D. J.; Vaillancourt, S. M.; Kaptoge, S.; Baldock, P.; Cooper, C.; Reeve, J.; Ntzani, E.; Evangelou, E.; Ohlsson, C.; Karas

10.1101/338863 — genomics — Posted on 2018-06-11

1729 BigStitcher: Reconstructing high-resolution image datasets of cleared and expanded samples

Hörl, D.; Rojas Rusak, F.; Preusser, F.; Tillberg, P.; Randel, N.; Chhetri, R. K.; Cardona, A.; Keller, P. J.; Harz, H.; Leonhardt, H.; Treier, M.; Preibisch, S.

10.1101/343954 — bioinformatics — Posted on 2018-06-10

1730 Identification and characterization of conserved and divergent genes encoding the nuclear envelope LINC complex in maize (Zea mays L.).

Gumber, H. K.; McKenna, J. F.; Estrada, A. L.; Tolmie, A. F.; Graumann, K.; Bass, H. W.

10.1101/343939 — cell biology — Posted on 2018-06-10

1731 Chromatin accessibility is dynamically regulated across C. elegans development and ageing

Janes, J.; Dong, Y.; Schoof, M.; Serizay, J.; Appert, A.; Cerrato, C.; Woodbury, C.; Chen, R.; Gemma, C.; Huang, N.; Kissiov, D.; Stempor, P.; Steward, A.; Zeiser, E.; Sauer, S.; Ahringer, J.

10.1101/279158 — genomics — Posted on 2018-06-10

1732 Bigger and Better? Representativeness of the Influenza A surveillance using one consolidated clinical microbiology laboratory data set as compared to the Belgian Sentinel Network of Laboratories

Van den Wijngaert, S.; Bossuyt, N.; Ferns, R. B.; Busson, L.; Serrano, G.; Wautier, M.; Thomas, I.; Byott, M.; Dupont, Y.; Nastouli, E.; Hallin, M.; Kozlakidis, Z.; Vandenberg, O.

10.1101/343236 — epidemiology — Posted on 2018-06-10

1733 IRES-mediated ribosome repositioning directs translation of a +1 overlapping ORF that enhances viral infection

Kerr, C. H.; Wang, Q. S.; Moon, K.-M.; Keatings, K.; Allan, D. W.; Foster, L. J.; Jan, E.

10.1101/303388 — biochemistry — Posted on 2018-06-10

1734 Decreased green autofluorescence intensity of lung parenchyma is a potential non-invasive diagnostic biomarker for lung cancer

Zhang, M.; Li, Y.; Zhang, J.; Teng, H.; Zhang, Q.; Xiang, Z.; Chang, Q.; Tao, Y.; Chu, T.; Ying, W.

10.1101/343533 — biophysics — Posted on 2018-06-10

1735 Distinctive diffusive properties of swimming planktonic copepods in different environmental conditions.

Pastore, R.; Uttieri, M.; Bianco, G.; Ribera d'Alcala, M.; Mazzocchi, M. G.

10.1101/343582 — biophysics — Posted on 2018-06-10

1736 The role of traction in membrane curvature generation

Alimohamadi, H.; Vasan, R.; Hassinger, J. E.; Stachowiak, J.; Rangamani, P.

10.1101/157313 — biophysics — Posted on 2018-06-10

1737 Worldwide survey reveals lower susceptibility of African Aedes aegypti mosquitoes to diverse strains of Zika virus

Aubry, F.; Martynow, D.; Baidaliuk, A.; Merkling, S. H.; Dickson, L. B.; Romero-Vivas, C. M.; Vega-Rua, A.; Dusfour, I.; Jiolle, D.; Paupy, C.; Mayanja, M. N.; Lutwama, J. J.; Kohl, A.; Duong, V.; Ponlawat, A.; Cao-Lormeau, V.-M.; Jarman, R. G.; Diagne, C. T.; Faye, O.; Faye, O.; Sall, A. A.; Lambrechts, L.

10.1101/342741 — epidemiology — Posted on 2018-06-10

1738 The Effects of Statistical Multiplicity of Infection on Virus Quantification and Infectivity Assays

Mistry, B. A.; D'Orsogna, M. R.; Chou, T.

10.1101/343723 — biophysics — Posted on 2018-06-10

1739 Spatial Awareness of a Bacterial Swarm

S. Kotian, H.; Harkar, S.; Joge, S.; Mishra, A.; Zafal, A.; Singh, V.; M. Varma, M.

10.1101/341529 — biophysics — Posted on 2018-06-10

1740 A quasi-integral controller for adaptation of genetic modules to variable ribosome demand

Huang, H.-H.; Qian, Y.; Del Vecchio, D.

10.1101/336271 — synthetic biology — Posted on 2018-06-10

1741 Tissue-specific Gene Expression Prediction Associates Vitiligo with SUOX through an Active Enhancer

Qi, Z.; Xie, S.; Chen, R.; Aisa, H. A.; Hon, G. C.; Guan, Y.

10.1101/337196 — genetics — Posted on 2018-06-10

1742 Adaptation decorrelates shape representations

Mattar, M. G.; Olkkonen, M.; Epstein, R. A.; Aguirre, G. K.

10.1101/249045 — neuroscience — Posted on 2018-06-10

1743 Sleep structure and quantity are determined by behavioral transition probability in Drosophila melanogaster

Wiggin, T. D.; Goodwin, P. R.; Donelson, N. C.; Liu, C.; Trinh, K.; Sanyal, S.; Griffith, L. C.

10.1101/263301 — neuroscience — Posted on 2018-06-10

1744 Lysyl oxidase inhibition drives the transdifferentiation from lung adenocarcinoma to squamous cell carcinoma in mice

Yao, S.; Han, X.; Tong, X.; Li, F.; Qin, Z.; Huang, H.-Y.; Ji, H.

10.1101/314393 — cancer biology — Posted on 2018-06-10

1745 Discovery of biased orientation of human DNA motif sequences affecting enhancer-promoter interactions and transcription of genes

Osato, N.

10.1101/290825 — bioinformatics — Posted on 2018-06-10

1746 Maximal growth rate requires minimal metabolic complexity

de Groot, D. H.; van Boxtel, C.; Planque, R.; Bruggeman, F. J.; Teusink, B.

10.1101/167171 — systems biology — Posted on 2018-06-10

1747 Evidence of inverse energy cascades in cerebral dynamics

Kerskens, C.; Lopez Perez, D.

10.1101/219931 — physiology — Posted on 2018-06-10

1748 Generation of a versatile BiFC ORFeome library for analyzing protein-protein interactions in live Drosophila

Merabet, S.; Bischof, J.; Duffraisse, M.; Furger, E.; Ajuria, L.; Giraud, G.; Vanderperre, S.; Paul, R.; Björklund, M.; Ahr, D.; Ahmed, A.; Spinelli, L.; Brun, C.; Basler, K.

10.1101/343483 — genomics — Posted on 2018-06-10

1749 Zebrafish hhex null mutant develops an intrahepatic intestinal tube due to de-repression of cdx1b and pdx1

Gao, C.; Huang, W.; Gao, Y.; Lo, L. J.; Luo, L.; Huang, H.; Chen, J.; Peng, J.

10.1101/343517 — developmental biology — Posted on 2018-06-09

1750 A robust method for transfection in choanoflagellates illuminates their cell biology and the ancestry of animal septins

Booth, D.; Middleton, H.; King, N.

10.1101/343111 — cell biology — Posted on 2018-06-09

1751 Intracellular delivery of mRNA to human primary T cells with microfluidic vortex shedding

Twite, A. A.; Lau, K. H. W. J.; Kashani, M. N.; Priest, C.; Nieva, J.; Gottlieb, D.; Pawell, R. S.

10.1101/343426 — bioengineering — Posted on 2018-06-09

1752 Taste Receptor Cells in Mice Express Receptors for the Hormone Adiponectin

Crosson, S. M.; Marques, A.; Dib, P.; Dotson, C. D.; Munger, S. D.; Zolotukhin, S.

10.1101/335927 — animal behavior and cognition — Posted on 2018-06-09

1753 Mapping molecular datasets back to the brain regions they are extracted from: Remembering the native countries of hypothalamic expatriates and refugees

Khan, A. M.; Grant, A. H.; Martinez, A.; Burns, G. A.; Thatcher, B. S.; Anekonda, V. T.; Thompson, B. W.; Roberts, Z. S.; Moralejo, D. H.; Blevins, J. E.

10.1101/307652 — neuroscience — Posted on 2018-06-09

1754 Repeat-driven generation of antigenic diversity in a major human pathogen, Trypanosoma cruzi

Talavera-Lopez, C.; Messenger, L. A.; Lewis, M. D.; Yeo, M.; Reis-Cunha, J. L.; Bartholomeu, D. C.; Calzada, J. E.; Saldana, A.; Ramirez, J. D.; Guhl, F.; Ocana-Mayorga, S.; Costales, J. A.; Gorchakov, R.; Jones, K.; Nolan Garcia, M.; Carrasco, H.; Grisard, E. C.; Teixeira, S. M. R.; Bottazzi, M. E.; Hotez, P. J.; Murray, K. O.; Grijalva, M. J.; Burleigh, B.; Miles, M. A.; Andersson, B.

10.1101/283531 — genomics — Posted on 2018-06-09

1755 The power of language: functional brain network topology of deaf and hearing in relation to sign language experience

Sinke, M. R. T.; Buitenhuis, J. W.; van der Maas, F.; Nwiboko, J.; Dijkhuizen, R. M.; van Diessen, E.; Otte, W.

10.1101/335414 — neuroscience — Posted on 2018-06-09

1756 High-quality genome assemblies of 15 Drosophila species generated using Nanopore sequencing

Miller, D. E.; Staber, C.; Zeitlinger, J.; Hawley, R. S.

10.1101/267393 — genomics — Posted on 2018-06-09

1757 Associations between Afrotropical bats, parasites, and microbial symbionts

Lutz, H. L.; Jackson, E. W.; Webala, P. W.; Babyesiza, W. S.; Kerbis Peterhans, J. C.; Demos, T. C.; Patterson, B. D.; Gilbert, J. A.

10.1101/340109 — ecology — Posted on 2018-06-09

1758 Disruption of the KH1 domain of Fmr1 leads to transcriptional alterations and attentional deficits in rats

Golden, C. E. M.; Breen, M. S.; Koro, L.; Sonar, S.; Niblo, K.; Browne, A.; Di Marino, D.; De Rubeis, S.; Baxter, M. G.; Buxbaum, J. D.; Harony-Nicolas, H.

10.1101/338988 — neuroscience — Posted on 2018-06-09

1759 SUMO-based expression and purification of dermcidin-derived DCD-1L, a human antimicrobial peptide, in Escherichia coli

Mohanraj, U.; Kinnunen, O.; Kaya, M. E.; Aranko, A. S.; Viskari, H.; Linder, M.

10.1101/343418 — molecular biology — Posted on 2018-06-09

1760 Rapid low-cost assembly of the Drosophila melanogaster reference genome using low-coverage, long-read sequencing

Solares, E. A.; Chakraborty, M.; Miller, D. E.; Kalsow, S.; Hall, K. E.; Perera, A. G.; Emerson, J. J.; Hawley, R. S.

10.1101/267401 — genomics — Posted on 2018-06-09

1761 Nrf1D is the first candidate secretory transcription factor in the blood plasma, with its precursor existing as a unique redox-sensitive transmembrane CNC-bZIP protein in somatic tissues

Yuan, J.; Wang, H.; Li, S.; Xiang, Y.; Hu, S.; Wang, M.; Qiu, L.; Zhang, Y.

10.1101/342428 — cell biology — Posted on 2018-06-09

1762 Measurement invariance explains the universal law of generalization for psychological perception

Frank, S. A.

10.1101/341305 — animal behavior and cognition — Posted on 2018-06-09

1763 Isoform and protein region abnormalities of dysbindin and copper transporter proteins in postmortem schizophrenia substantia nigra.

Schoonover, K. E.; Roberts, R.

10.1101/343178 — neuroscience — Posted on 2018-06-09

1764 PIKfyve/Fab1 is required for efficient V-ATPase delivery to phagosomes, phagosomal killing, and restriction of Legionella infection

Buckley, C. M.; Heath, V. L.; Gueho, A.; Dove, S. K.; Michell, R. H.; Meier, R.; Hilbi, H.; Soldati, T.; Insall, R. H.; King, J.

10.1101/343301 — cell biology — Posted on 2018-06-09

1765 tDCS over the left prefrontal cortex does not affect time-trial self-paced cycling performance: Evidence from oscillatory brain activity and power output.

Holgado, D. M.; Zandonai, T.; Ciria, L. F.; Zabala, M.; Hopker, J.; Sanabria, D.

10.1101/341388 — neuroscience — Posted on 2018-06-09

1766 Transient and sustained control mechanisms supporting novel instructed behavior.

Palenciano, A. F.; Gonzalez-Garcia, C.; Arco, J. E.; Ruz, M.

10.1101/341818 — neuroscience — Posted on 2018-06-09

1767 The dynamics of cortical GABA in human motor learning

Kolasinski, J.; Hinson, E. L.; Divanbeighi Zand, A. P.; Rizov, A.; Emir, U. E.; Stagg, C. J.

10.1101/341503 — neuroscience — Posted on 2018-06-09

1768 Pulling the covers in electronic health records for an association study with self-reported sleep behaviors

Rhoades, S. D.; Bastarache, L.; Denny, J. C.; Hughey, J. J.

10.1101/341552 — bioinformatics — Posted on 2018-06-09

1769 Rapid, specific detection and quantification of Yersinia pestis using a species-specific SNP in the ferric uptake regulator gene (furMAMA)

Nilsson, P.; Gurbanov, S.; Easterday, W. R.

10.1101/341321 — molecular biology — Posted on 2018-06-09

1770 Measurement invariance explains the universal law of generalization for psychological perception

Frank, S. A.

10.1101/341305 — animal behavior and cognition — Posted on 2018-06-09

1771 Occurence of lymphedema in wild-caught anurans

McCallum, M. L.

10.1101/336131 — ecology — Posted on 2018-06-09

1772 Scarless gene tagging of transcriptionally silent genes in hiPSCs to visualize cardiomyocyte sarcomeres in live cells

Roberts, B.; Arakaki, J.; Gerbin, K. A.; Malik, H.; Nelson, A.; Hendershott, M. C.; Hookway, C.; Ludmann, S. A.; Mueller, I. A.; Yang, R.; Rafelski, S. M.; Gunawardane, R. N.

10.1101/342881 — cell biology — Posted on 2018-06-09

1773 Essential Roles of the sppRA Fructose-Phosphate Phosphohydrolase Operon in Carbohydrate Metabolism and Virulence Expression by Streptococcus mutans

Zeng, L.; Burne, R. A.

10.1101/342170 — microbiology — Posted on 2018-06-08

1774 Arabidopsis species deploy distinct strategies to cope with drought stress

Bouzid, M.; He, F.; Schmitz, G.; Haeusler, R.; Weber, A.; Mettler, T.; de Meaux, J.

10.1101/341859 — plant biology — Posted on 2018-06-08

1775 Facilitation of hERG channels by blockers: a mechanism predicted to reduce lethal cardiac arrhythmias

Furutani, K.; Tsumoto, K.; Chen, I.-S.; Handa, K.; Yamakawa, Y.; Sack, J. T.; Kurachi, Y.

10.1101/341875 — pharmacology and toxicology — Posted on 2018-06-08

1776 Not-so-working memory: Drift in fMRI pattern representations during maintenance predicts errors in a visual working memory task

Lim, P. C.; Ward, E. J.; Vickery, T. J.; Johnson, M. R.

10.1101/341990 — neuroscience — Posted on 2018-06-08

1777 Prokaryotic Diversity from Extreme Environments of Pakistan and its Potential Applications at Regional Levels

Khan, R.; Khan, M. I.; Zeb, A.; Roy, N.; Yasir, M.; Khan, I.; Qazi, J. I.; Ahmad, S.; Ullah, R.; Bhutto, Z.

10.1101/342949 — microbiology — Posted on 2018-06-08

1778 The Recombination Landscape of Drosophila virilis is Robust to Transposon Activation in Hybrid Dysgenesis

Hemmer, L. W.; Blumenstiel, J. P.

10.1101/342824 — genetics — Posted on 2018-06-08

1779 A simple and flexible computational framework for inferring sources of heterogeneity from single-cell dynamics

Dharmarajan, L.; Kaltenbach, H.-M.; Rudolf, F.; Stelling, J.

10.1101/341867 — systems biology — Posted on 2018-06-08

1780 Avoidance response to CO2 in the lateral horn

Varela, N.; Gaspar, M.; Dias, S.; Vasconcelos, M. L.

10.1101/342675 — neuroscience — Posted on 2018-06-08

1781 Deep learning models reveal internal structure and diverse computations in the retina under natural scenes

Maheswaranathan, N.; McIntosh, L. T.; Kastner, D. B.; Melander, J.; Brezovec, L.; Nayebi, A.; Wang, J.; Ganguli, S.; Baccus, S. A.

10.1101/340943 — neuroscience — Posted on 2018-06-08

1782 The effects of psychiatric history and age on self-regulation of the default mode network

Skouras, S.; Scharnowski, F.

10.1101/342220 — neuroscience — Posted on 2018-06-08

1783 Large-scale, quantitative protein assays on a high-throughput DNA sequencing chip

Layton, C. J.; McMahon, P. L.; Greenleaf, W. J.

10.1101/342808 — molecular biology — Posted on 2018-06-08

1784 CRISPR/Cas9-mediated gene knockin in the hydroid Hydractinia symbiolongicarpus

Sanders, S. M.; Ma, Z.; Hughes, J. M.; Riscoe, B. M.; Gibson, G. A.; Watson, A. M.; Flici, H.; Frank, U.; Schnitzler, C. E.; Baxevanis, A. D.; Nicotra, M. L.

10.1101/342592 — molecular biology — Posted on 2018-06-08

1785 Dauer diapause has transgenerational effects on starvation survival and gene expression plasticity

Webster, A. K.; Jordan, J. M.; Hibshman, J. D.; Chitrakar, R.; Baugh, L. R.

10.1101/342113 — evolutionary biology — Posted on 2018-06-08

1786 Homeostatic remodeling of mammalian membranes in response to dietary lipids is essential for cellular fitness

Levental, K. R.; Malmberg, E.; Ernst, R.; Levental, I.

10.1101/342873 — cell biology — Posted on 2018-06-08

1787 Investigating the long-term stability of protein immunogen(s) for whole recombinant yeast-based vaccines

Kumar, R.

10.1101/339093 — synthetic biology — Posted on 2018-06-08

1788 Deep sequencing of circulating exosomal microRNA allows non-invasive glioblastoma diagnosis

Ebrahimkhani, S.; Vafaee, F.; Hallal, S.; Wei, H.; Lee, M.; Young, P.; Satgunaseelan, L.; Shivalingam, B.; Suter, C.; Buckland, M.; Kaufman, K.

10.1101/342154 — pathology — Posted on 2018-06-08

1789 Memory for non-painful auditory items is influenced by whether they are experienced in a context involving painful electrical stimulation

Vogt, K. M.; Norton, C. M.; Speer, L. E.; Tremel, J. J.; Ibinson, J. W.; Reder, L. M.; Fiez, J. A.

10.1101/341891 — neuroscience — Posted on 2018-06-08

1790 Long-range chromatin interactions on the inactive X and at Hox clusters are regulated by the non-canonical SMC protein Smchd1.

Jansz, N.; Keniry, A.; Trussart, M.; Bildsoe, H.; Beck, T.; Tonks, I. D.; Mould, A. W.; Hickey, P.; Breslin, K.; Iminitoff, M.; Ritchie, M.; McGlinn, E.; Kay, G. F.; Murphy, J. M.; Blewitt, M.

10.1101/342212 — molecular biology — Posted on 2018-06-08

1791 Gut Microbiota Diversity across Ethnicities in the United States

Brooks, A. W.; Priya, S.; Blekhman, R.; Bordenstein, S. R.

10.1101/342915 — microbiology — Posted on 2018-06-08

1792 Evolutionary forecasting of phenotypic and genetic outcomes of experimental evolution in Pseudomonas

Lind, P. A.

10.1101/342261 — evolutionary biology — Posted on 2018-06-08

1793 Contrasting effects of aging on the expression of transposons, the piRNA machinery and mitochondrial transcripts in the Drosophila ovary.

Erwin, A. A.; Blumenstiel, J. P.

10.1101/342105 — evolutionary biology — Posted on 2018-06-08

1794 The effect of cortical elasticity and active tension on cell adhesion mechanics

Smeets, B.; Cuvelier, M.; Pesek, J.; Ramon, H.

10.1101/343038 — biophysics — Posted on 2018-06-08

1795 Can Drosophila melanogaster tell who’s who?

Schneider, J.; Murali, N.; Taylor, G.; Levine, J.

10.1101/342857 — animal behavior and cognition — Posted on 2018-06-08

1796 What is the Best Available Science?: Conservation Status of Two California Desert Vertebrates

Clause, A. G.; Norment, C. J.; Cunningham, L.; Emmerich, K.; Buckmaster, N. G.; Nordin, E.; Hansen, R. W.

10.1101/342048 — zoology — Posted on 2018-06-08

1797 Hierarchical heterogeneity across human cortex shapes large-scale neural dynamics

Demirtas, M.; Burt, J. B.; Helmer, M.; Ji, J. L.; Adkinson, B. D.; Glasser, M. F.; Van Essen, D. C.; Sotiropoulos, S. N.; Anticevic, A.; Murray, J. D.

10.1101/341966 — neuroscience — Posted on 2018-06-08

1798 Neuroligin dependence of pharyngeal pumping reveals an extrapharyngeal modulation of Caenorhabditis elegans feeding.

Calahorro, F.; Keefe, F.; Dillon, J.; Holden-Dye, L.; O'Connor, V.

10.1101/341982 — neuroscience — Posted on 2018-06-08

1799 Fbxw7 is a critical regulator of Schwann cell myelinating potential

Harty, B. L.; Coelho, F.; Ackerman, S. D.; Herbert, A. L.; Lyons, D. A.; Monk, K. R.

10.1101/342931 — neuroscience — Posted on 2018-06-08

1800 Thresholding of sensory inputs by extrasynaptic glutamate receptors in olfactory bulb glomeruli

Gire, D. H.; Zak, J. D.; Bourne, J. N.; Goodson, N. B.; Lynch, B. E.; Dulla, C. G.; Schoppa, N.

10.1101/341958 — neuroscience — Posted on 2018-06-08

1801 An Implementation of Empirical Bayesian Inference and Non-Null Bootstrapping for Threshold Selection and Power Estimation in Multiple and Single Statistical Testing

Nasseroleslami, B.

10.1101/342964 — neuroscience — Posted on 2018-06-08

1802 The non-canonical SMC protein SmcHD1 antagonises TAD formation on the inactive X chromosome

Gdula, M. R.; Nesterova, T. B.; Pintacuda, G.; Godwin, J.; Zhan, Y.; Ozadam, H.; McClellan, M.; Moralli, D.; Krueger, F.; Green, C. M.; Reik, W.; Kriaucionis, S.; Heard, E.; Dekker, J.; Brockdorff, N.

10.1101/342147 — molecular biology — Posted on 2018-06-08

1803 Sublethal β-lactam antibiotics induce PhpP phosphatase expression and StkP kinase phosphorylation in PBP-independent β-lactam antibiotic resistance of Streptococcus pneumoniae

Huang, Y.; Sun, A.-H.; Sun, Y.; Du, P.; Liu, X.; Yan, J.

10.1101/342188 — microbiology — Posted on 2018-06-08

1804 In vivo gene expression analyses provide unique insights on P. vivax gametocytogenesis and chloroquine response

Kim, A.; Popovici, J.; Menard, D.; Serre, D.

10.1101/342196 — microbiology — Posted on 2018-06-08

1805 Uneven distribution of cobamide biosynthesis and dependence in bacteria predicted by comparative genomics

Shelton, A. N.; Seth, E. C.; Mok, K. C.; Han, A. W.; Jackson, S. N.; Haft, D. R.; Taga, M. E.

10.1101/342006 — microbiology — Posted on 2018-06-08

1806 Genetic Diversity Study of Fusarium culmorum: Causal agent of wheat crown rot in Iraq

Matny, O.; Haas, M.; Shamsallah, S.

10.1101/341909 — microbiology — Posted on 2018-06-08

1807 Mapping of TNTs using Correlative Cryo-Electron Microscopy Reveals a Novel Structure

Sartori-Rupp, A.; Cordero Cervantes, D.; Pepe, A.; Delage, E.; Gousset, K.; Corroyer-Dulmont, S.; Schmitt, C.; Krijnse-Locker, J.; Zurzolo, C.

10.1101/342469 — cell biology — Posted on 2018-06-08

1808 Novel significant stage-specific differentially expressed genes in liver hepatocellular carcinoma

Sarathi, A.; Palaniappan, A.

10.1101/342204 — cancer biology — Posted on 2018-06-08

1809 Structure simulation of thrombopoietin receptor C-MPL with missense SNPs and its geographical distribution

Zheng, W.; Zeng, D.; Zhou, Q.; Li, Z.; Liang, H.

10.1101/342089 — bioinformatics — Posted on 2018-06-08

1810 Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer’s Disease

Elsheikh, S. S. M.; Chimusa, E. R.; Mulder, N.; Crimi, A.

10.1101/342436 — bioinformatics — Posted on 2018-06-08

1811 A Visualization Tool to Evaluate Pairwise Protein Structure Alignment Algorithms

Mukhopadhyay, A.; Bhattacharjee, S.

10.1101/342899 — bioinformatics — Posted on 2018-06-08

1812 Boundary Strength Analysis: Combining colour pattern geometry and coloured patch visual properties for use in predicting behaviour and fitness

Endler, J. A.; Cole, G. L.; Kranz, X.

10.1101/342063 — animal behavior and cognition — Posted on 2018-06-08

1813 Antagonist muscle activity during reactive balance responses is elevated in Parkinson’s disease and in balance impairment

Lang, K. C.; Hackney, M. E.; Ting, L. H.; McKay, J. L.

10.1101/343004 — neuroscience — Posted on 2018-06-08

1814 Injury-induced cold sensitization in Drosophila larvae involves behavioral shifts that require the TRP channels Pkd2 and Brv1.

Turner, H. N.; Patel, A. A.; Cox, D. N.; Galko, M. J.

10.1101/342717 — neuroscience — Posted on 2018-06-08

1815 Mechanisms of functional compensation, delineated by eigenvector centrality mapping, across the pathophysiological continuum of Alzheimer’s disease

Skouras, S.; Falcon, C.; Tucholka, A.; Rami, L.; Sanchez-Valle, R.; Llado, A.; Gispert, J. D.; Molinuevo, J. L.

10.1101/342246 — neuroscience — Posted on 2018-06-08

1816 Association between Parkinson’s Disease subtypes and tests of physical function: the 360-degree turn test is most predictive

Prime, M.; McKay, J.; Bay, A.; Hart, A.; Kim, C.; Abraham, A.; Hackney, M.

10.1101/342733 — neuroscience — Posted on 2018-06-08

1817 Mobilization of Pack-CACTA transposons in Arabidopsis reveals the mechanism of gene shuffling

Catoni, M.; Jonesman, T.; Cerruti, E.; Paszkowski, J.

10.1101/342816 — genetics — Posted on 2018-06-08

1818 The expected time to cross extended fitness plateaus

Ghafari, M.; Weissman, D.

10.1101/343053 — evolutionary biology — Posted on 2018-06-08

1819 Immuno-suppressive Virus-like particles of Drosophila parasitoids derive from the domestication of a behaviour-manipulating virus relative

Di Giovanni, D.; Lepetit, D.; Boulesteix, M.; Ravallec, M.; Varaldi, J.

10.1101/342758 — evolutionary biology — Posted on 2018-06-08

1820 Regulation of FtsZ levels in Escherichia coli in slow growth conditions

Männik, J.; Walker, B. E.; Männik, J.

10.1101/342766 — cell biology — Posted on 2018-06-08

1821 On identifying collective displacements in apo-proteins that reveal eventual binding pathways

Prakashchand, D. D.; Ahalawat, N.; Khandelia, H.; Mondal, J.; Sengupta, S.

10.1101/342253 — biophysics — Posted on 2018-06-08

1822 DataPackageR: Reproducible data preprocessing, standardization and sharing using R/Bioconductor for collaborative data analysis.

Finak, G.; Mayer, B.; Fulp, W.; Obrecht, P.; Sato, A.; Chung, E.; Holman, D.; Gottardo, R.

10.1101/342907 — bioinformatics — Posted on 2018-06-08

1823 Decoupling tRNA promoter and processing activities enables specific Pol-II Cas9 guide RNA expression

Knapp, D. J.; Michaels, Y. S.; Jamilly, M.; Ferry, Q. R.; Barbosa, H.; Milne, T. A.; Fulga, T. A.

10.1101/342485 — bioengineering — Posted on 2018-06-08

1824 Extracting Reproducible Time-Resolved Resting State Networks using Dynamic Mode Decomposition

Kunert-Graf, J. M.; Eschenburg, K. M.; Galas, D. J.; Kutz, J. N.; Rane, S. D.; Brunton, B. W.

10.1101/343061 — neuroscience — Posted on 2018-06-08

1825 Isolating mitotic and meiotic germ cells from male mice by developmental synchronization, staging, and sorting

Romer, K. A.; de Rooij, D. G.; Page, D. C.

10.1101/342832 — developmental biology — Posted on 2018-06-08

1826 KH-type splicing regulatory protein controls colorectal cancer cell growth and modulates the tumor microenvironment

Caiazza, F.; Oficjalska, K.; Tosetto, M.; Phelan, J.; Noonan, S.; Martin, P.; Killick, K.; Breen, L.; O'Neill, F.; Nolan, B.; Furney, S.; Power, R.; Fennelly, D.; Craik, C.; O'Sullivan, J.; Sheahan, K.; Dohery, G.; Ryan, E.

10.1101/342840 — cancer biology — Posted on 2018-06-08

1827 Automatically eliminating errors induced by suboptimal parameter choices in transcript assembly

DeBlasio, D.; Kingsford, C.

10.1101/342865 — bioinformatics — Posted on 2018-06-08

1828 Transcriptional trajectories of human kidney disease progression

Cippa, P. E.; Sun, B.; Liu, J.; Chen, L.; Naesens, M.; McMahon, A. P.

10.1101/342972 — pathology — Posted on 2018-06-08

1829 Late B lymphocyte action in dysfunctional tissue repair following kidney injury and transplantation

Cippa, P.; Liu, J.; Sun, B.; Kumar, S.; Naesens, M.; McMahon, A. P.

10.1101/343012 — immunology — Posted on 2018-06-08

1830 Intergenerational effects of dietary restriction on insulin/IGF signaling and reproductive development

Jordan, J. M.; Hibshman, J. D.; Kaplan, R. E. W.; Webster, A. K.; Leinroth, A.; Guzman, R.; Maxwell, C. S.; Bowman, E. A.; Hubbard, E. J. A.; Baugh, L. R.

10.1101/342956 — developmental biology — Posted on 2018-06-08

1831 Signaling dynamics control cell fate in the early Drosophila embryo

Johnson, H. E.; Shvartsman, S. Y.; Toettcher, J. E.

10.1101/342998 — developmental biology — Posted on 2018-06-08

1832 Modulation of mutant KrasG12D-driven lung tumorigenesis in vivo by gain or loss of PCDH7 function

Zhou, X.; Evers, B. M.; Padanad, M. S.; Richardson, J. A.; Stein, E.; Zhu, J.; Hammer, R. E.; O'Donnell, K. A.

10.1101/343103 — cancer biology — Posted on 2018-06-08

1833 Leveraging genetic variants for personalized and allele-specific sgRNA design

Keough, K. C.; Lyalina, S.; Olvera, M. P.; Whalen, S.; Conklin, B. R.; Pollard, K. S.

10.1101/342923 — bioinformatics — Posted on 2018-06-08

1834 Regulation of histone methylation by automethylation of PRC2

Wang, X.; Long, Y.; Paucek, R. D.; Gooding, A. R.; Lee, T.; Cech, T. R.

10.1101/343020 — biochemistry — Posted on 2018-06-08

1835 Kinesin Binding Protein (KBP) buffers the activity of Kif18A and Kif15 in mitosis to ensure accurate chromosome segregation

Malaby, H.; Dumas, M.; Ohi, R.; Stumpff, J.

10.1101/343046 — cell biology — Posted on 2018-06-08

1836 Unraveling mitotic protein networks by 3D multiplexed epitope drug screening

Maier, L.; Kallenberger, S.; Jechow, K.; Waschow, M.; Eils, R.; Conrad, C.

10.1101/231779 — systems biology — Posted on 2018-06-08

1837 Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

Ye, C. J.; Chen, J.; Villani, A.-C.; Subramaniam, M.; Gate, R. E.; Bhangale, T.; Lee, M. N.; Raj, T.; Raychowdhury, R.; Li, W.; Rogel, N.; Simmons, S.; Imboywa, S. H.; Chipendo, P. I.; McCabe, C.; Lee, M. H.; Frohlich, I. Y.; Stranger, B. E.; De Jager, P. L.; Regev, A.; Behrens, T.; Hacohen, N.

10.1101/188961 — genomics — Posted on 2018-06-08

1838 Quantifying Immune-Based Counterselection of Somatic Mutations

Yang, F.; Kim, D.-K.; Nakagawa, H.; Hayashi, S.; Imoto, S.; Stein, L.; Roth, F.

10.1101/219576 — genetics — Posted on 2018-06-08

1839 The genomic landscape of recombination rate variation in Chlamydomonas reinhardtii reveals effects of linked selection

Hasan, A. R.; Ness, R. W.

10.1101/340992 — evolutionary biology — Posted on 2018-06-08

1840 Biomechanics of the peafowl’s crest reveals frequencies tuned to social displays

Kane, S. A.; Van Beveren, D.; Dakin, R.

10.1101/197525 — zoology — Posted on 2018-06-08

1841 Evidence of ventral stream computations in rat lateral extrastriate cortex

Matteucci, G.; Bellacosa Marotti, R.; Rosselli, F. B.; Zoccolan, D.

10.1101/341792 — neuroscience — Posted on 2018-06-08

1842 Epidemiology of a bubonic plague outbreak in Glasgow, Scotland in 1900

Dean, K. R.; Krauer, F.; Schmid, B. V.

10.1101/340547 — epidemiology — Posted on 2018-06-08

1843 Pancreatic adenocarcinoma human organoids share structural and genetic features with primary tumors

Romero Calvo, I.; Weber, C. R.; Ray, M.; Brown, M. A.; Kirby, K. J.; Nandi, R. K.; Long, T. M.; Sparrow, S. M.; Ugolkov, A. V.; Qiang, W.; Zhang, Y.; Brunetti, T. M.; Kindler, H. L.; Segal, J. P.; Rzhetsky, A.; Mazar, A. P.; Buschmann, M. M.; Weichselbaum, R. R.; Rogin, K. K.; White, K. P.

10.1101/338897 — cancer biology — Posted on 2018-06-08

1844 TGFβ blocks STING-induced IFNα/β release and tumor rejection in spontaneous mammary tumors

Guerin, M. V.; Regnier, F.; Feuillet, V.; Vimeux, L.; Weiss, J. M.; Guilbert, T.; Thoreau, M.; Renault, G.; Finisguerra, V.; Donnadieu, E.; Trautmann, A.; Bercovici, N.

10.1101/336990 — cancer biology — Posted on 2018-06-08

1845 Deciphering the rules of mRNA structure differentiation in vivo and in vitro with deep neural networks in Saccharomyces cerevisiae

Yu, H.; Meng, W.; Mao, Y.; Zhang, Y.; Sun, Q.; Tao, S.

10.1101/337733 — bioinformatics — Posted on 2018-06-08

1846 Cellular heterogeneity in pressure and growth emerges from tissue topology and geometry

Long, Y.; Cheddadi, I.; Mirabet, V.; Dumond, M.; Godin, C.; Boudaoud, A.

10.1101/334664 — biophysics — Posted on 2018-06-08

1847 Distinct CED-10/Rac1 Domains Confer Context-Specific Functions in Neuronal Development

Pocock, R.; Noergaard, S.; Deng, S.; Cao, W.

10.1101/341412 — neuroscience — Posted on 2018-06-08

1848 Functional Role of Annexins in Zebrafish Caudal Fin Regeneration: A Gene Knockdown Approach in Regenerating Tissue.

Quoseena, M.; Vuppaladadium, S.; Hussain, S.; Bharathi, S.; Idris, M. M.

10.1101/342238 — developmental biology — Posted on 2018-06-08

1849 SHANK3 downregulation in the VTA accelerates the extinction of contextual associations induced by non-familiar conspecific interaction

Bariselli, S.; Contestabile, A.; Tzanoulinou, S.; Bellone, C.

10.1101/342295 — neuroscience — Posted on 2018-06-08

1850 Offline impact of transcranial focused ultrasound on cortical activation in primates

Verhagen, L.; Gallea, C.; Folloni, D.; Constans, C.; Jensen, D.; Ahnine, H.; Roumazeilles, L.; Santin, M.; Ahmed, B.; Lehericy, S.; Klein-Flugge, M.; Krug, K.; Mars, R. B.; Rushworth, M. F.; Pouget, P.; Aubry, J.-F.; Sallet, J.

10.1101/342337 — neuroscience — Posted on 2018-06-08

1851 Single-cell transcriptional analysis reveals naïve helper ILC-like cells in zebrafish

Hernandez, P. P.; Strzelecka, P. M.; Athanasiadis, E. I.; Robalo, A. F.; Collins, C. M.; Boudinot, P.; Levraud, J.-P.; Cvejic, A.

10.1101/342477 — immunology — Posted on 2018-06-08

1852 SVCollector: Optimized sample selection for validating and long-read resequencing of structural variants

Sedlazeck, F. J.; Lemmon, Z.; Soyk, S.; Salerno, W. J.; Lippman, Z.; Schatz, M. C.

10.1101/342386 — bioinformatics — Posted on 2018-06-08

1853 Dietary Advanced Glycation End-Product Consumption Leads to Mechanical Stiffening of Murine Intervertebral Discs

Krishnamoorthy, D.; Hoy, R. C.; Natelson, D. M.; Torre, O. M.; Laudier, D. M.; Iatridis, J. C.; Illien-Junger, S.

10.1101/342691 — bioengineering — Posted on 2018-06-08

1854 TOL proteins mediate vacuolar sorting of the borate transporter BOR1 in Arabidopsis thaliana.

Yoshinari, A.; Korbei, B.; Takano, J.

10.1101/342345 — plant biology — Posted on 2018-06-08

1855 Altered Stool Microbiota of Infants with Cystic Fibrosis Shows Reduction in Genera Associated with Immune Programming

Anosca, K.; Cherinkova, D. A.; Ruoff, K. L.; Li, K.; Guill, M. L.; MacKenzie, T. A.; Dorman, D. B.; Moulton, L. A.; Williams, M. A.; Aldrich, B. J.; Yuan, I. H.; Karagas, M. R.; O'Toole, G.; Madan, J. C.

10.1101/342782 — microbiology — Posted on 2018-06-08

1856 De novo mutations drive the spread of macrolide resistant Mycoplasma genitalium: a mathematical modelling study

Cadosch, D.; Garcia, V.; Althaus, C. L.; Jensen, J. S.; Low, N.

10.1101/321216 — microbiology — Posted on 2018-06-08

1857 A map of climate change-driven natural selection in Arabidopsis thaliana

Exposito-Alonso, M.; Burbano, H. A.; Bossdorf, O.; Nielsen, R.; Weigel, D.

10.1101/321133 — evolutionary biology — Posted on 2018-06-08

1858 Anywhere but here: local conditions alone drive dispersal in Daphnia

Erm, P.; Hall, M. D.; Phillips, B. L.

10.1101/334243 — ecology — Posted on 2018-06-08

1859 14-3-3 proteins activate Pseudomonas exotoxins-S and -T by chaperoning a hydrophobic surface

Karlberg, T.; Hornyak, P.; Pinto, A. F.; Milanova, S.; Ebrahimi, M.; Lindberg, M.; Pullen, N.; Nordstrom, A.; Loverli, E.; Caraballo, R.; Wong, E. V.; Nareoja, K.; Thorsell, A.-G.; Elofsson, M.; De La Cruz, E. M.; Bjorkegren, C.; Schuler, H.

10.1101/342659 — biochemistry — Posted on 2018-06-08

1860 A synthetic system that combats fungal infections

Tscherner, M.; Giessen, T. W.; Markey, L.; Kumamoto, C. A.; Silver, P. A.

10.1101/342287 — synthetic biology — Posted on 2018-06-08

1861 Manipulation of deep brain activity in primates using transcranial focused ultrasound stimulation

Folloni, D.; Verhagen, L.; Mars, R. B.; Fouragnan, E.; Aubry, J.-F.; Rushworth, M. F. S.; Sallet, J.

10.1101/342303 — neuroscience — Posted on 2018-06-08

1862 Selective single molecule sequencing and assembly of a human Y chromosome of African origin

10.1101/342667 — genomics — Posted on 2018-06-08

1863 \"Ancestralization\" of human pluripotent stem cells by multiplexed precise genome editing

Riesenberg, S.; Maricic, T.; Pääbo, S.

10.1101/342311 — genetics — Posted on 2018-06-08

1864 The Influence Of Social Behavior On Competition Between Virulent Pathogen Strains

Pharaon, J.; Bauch, C.

10.1101/293936 — evolutionary biology — Posted on 2018-06-08

1865 Context-dependent spatial sorting of dispersal-related traits in the invasive starlings (Sturnus vulgaris) of South Africa and Australia.

Phair, D. J.; Le Roux, J.; Berthouly-Salazar, C.; Visser, V.; Jansen van Vuuren, B.; Cardilini, A.; Hui, C.

10.1101/342451 — evolutionary biology — Posted on 2018-06-08

1866 Group Size as a Trade Off Between Fertility and Predation Risk: Implications for Social Evolution

Dunbar, R. I. M.; Mac Carron, P.

10.1101/342550 — ecology — Posted on 2018-06-08

1867 The swimming plus-maze test: a novel high-throughput model for assessment of anxiety-related behaviour in larval zebrafish. (Danio rerio)

Varga, Z. K.; Zsigmond, A.; Pejtsik, D.; Varga, M.; Demeter, K.; Mikics, E.; Haller, J.; Aliczki, M.

10.1101/342402 — animal behavior and cognition — Posted on 2018-06-08

1868 Spotting the path that leads nowhere: Modulation of human theta and alpha oscillations induced by trajectory changes during navigation

Javadi, A.-H.; Patai, E. Z.; Margois, A.; Tan, H.-R.; Kumaran, D.; Nardini, M.; Penny, W.; Duzel, E.; Dayan, P.; Spiers, H.

10.1101/301697 — neuroscience — Posted on 2018-06-08

1869 Genetic divergence and phenotypic plasticity contribute to variation in cuticular hydrocarbons in the seaweed fly C. frigida

Berdan, E. L.; Enge, S.; Nylund, G.; Wellenreuther, M.; Martens, G. A.; Pavia, H.

10.1101/303206 — evolutionary biology — Posted on 2018-06-08

1870 A comprehensive, mechanistically detailed, and executable model of the Cell Division Cycle in Saccharomyces cerevisiae

Muenzner, U.; Klipp, E.; Krantz, M.

10.1101/298745 — systems biology — Posted on 2018-06-08

1871 Layer 3 dynamically coordinates columnar activity according to spatial context

Plomp, G.; Larderet, I.; Fiorini, M.; Busse, L.

10.1101/277533 — neuroscience — Posted on 2018-06-08

1872 Genome-wide fitness assessment during diurnal growth reveals an expanded role of the cyanobacterial circadian clock protein KaiA

Welkie, D. G.; Rubin, B. E.; Chang, Y.-G.; Diamond, S.; Rifkin, S. A.; LiWang, A.; Golden, S. S.

10.1101/283812 — microbiology — Posted on 2018-06-08

1873 Experimental manipulation of nocturnal nest cavity temperature in wild blue tits

Simmonds, E. G.; Sheldon, B. C.; Coulson, T.; Cole, E. F.

10.1101/279455 — ecology — Posted on 2018-06-08

1874 Learning of goal-relevant and irrelevant complex visual sequences in human V1

Rosenthal, C. R.; Mallik, I.; Caballero-Gaudes, C.; Sereno, M.; Soto, D.

10.1101/261255 — neuroscience — Posted on 2018-06-08

1875 Evolution of sexually-transferred steroids in Anopheles mosquitoes

Pondeville, E.; Puchot, N.; Lang, M.; Cherrier, F.; Schaffner, F.; Dauphin-Villemant, C.; Bischoff, E.; Bourgouin, C.

10.1101/248112 — evolutionary biology — Posted on 2018-06-08

1876 FtsW activity and lipid II synthesis are required for recruitment of MurJ to midcell during cell division in E. coli

Liu, X.; Meiresonne, N. Y.; Bouhss, A.; den Blaauwen, T.

10.1101/230680 — microbiology — Posted on 2018-06-08

1877 Demographic features and mortality risks in smallholder poultry farms of the Mekong river delta region

Delabouglise, A.; Nguyen-Van-Yen, B.; Nguyen, T. T. L.; Huynh, X. T. A.; Phuong, T. N.; Ha, L. M.; Boni, M. F.

10.1101/341800 — epidemiology — Posted on 2018-06-08

1878 A rainfall-manipulation experiment with 517 Arabidopsis thaliana accessions

Exposito-Alonso, M.; Gomez Rodriguez, R.; Barragan, C.; Capovilla, G.; Chae, E.; Devos, J.; Dogan, E. S.; Friedemann, C.; Gross, C.; Lang, P.; Lundberg, D.; Middendorf, V.; Kageyama, J.; Karasov, T.; Kersten, S.; Petersen, S.; Rabbani, L.; Regalado, J.; Reinelt, L.; Rowan, B.; Seymour, D. K.; Symeonidi, E.; Schwab, R.; Tran, D. T. N.; Venkataramani, K.; Van de Weyer, A.-L.; Vasseur, F.; Wang, G.; Wedegärtner, R.; Weiss, F.; Wu, R.; Xi, W.; Zaidem, M.; Zhu, W.; Garcia-Arenal, F.; Burbano, H. A.; Bossdorf, O.; Weigel, D.

10.1101/186767 — evolutionary biology — Posted on 2018-06-08

1879 Fast Non-Parametric Estimation of Outbreak Growth from Cumulative Incidence Applied to the Current Ebola Epidemic

House, T.

10.1101/340067 — epidemiology — Posted on 2018-06-08

1880 Storage of prescription veterinary medicines on UK dairy farms: a cross-sectional study

Rees, G. M.; Barrett, D. C.; Buller, H. J.; Mills, H. L.; Reyher, K. K.

10.1101/342360 — epidemiology — Posted on 2018-06-08

1881 A Neural Population Mechanism For Rapid Learning

Perich, M. G.; Gallego, J. A.; Miller, L.

10.1101/138743 — neuroscience — Posted on 2018-06-08

1882 On the Social Structure behind Biological Collections

de Siracusa, P.; Gadelha, L. M. R.; Ziviani, A.

10.1101/341297 — systems biology — Posted on 2018-06-08

1883 The day/night difference in the circadian clock’s response to acute lipopolysaccharide and the rhythmic Stat3 expression in the rat suprachiasmatic nucleus

Moravcova, S.; Pa?esova, D.; Melkes, B.; Kyclerova, H.; Spisska, V.; Novotny, J.; Bendova, Z.

10.1101/342568 — neuroscience — Posted on 2018-06-08

1884 Obesity impairs resistance to Leishmania major infection in C57BL/6 mice.

Maioli, T. U.; Silva, F. C.; Martins, V. D.; Caixeta, F.; Carneiro, M. B.; Goes, G. R.; Paiva, N. C.; Carneiro, C. M.; Vieira, L. Q.; Faria, A. M. C.; No,

10.1101/342642 — immunology — Posted on 2018-06-08

1885 The complete mitochondrial genome of Melon thrips, Thrips palmi (Thripinae) and comparative analysis: A vector for Tospoviruses

Chakraborty, R.; Tyagi, K.; Kundu, S.; Rahaman, I.; Singha, D.; Chandra, K.; Patnaik, S.; Kumar, V.

10.1101/342519 — genomics — Posted on 2018-06-08

1886 Machine learning techniques for classifying the mutagenic origins of point mutations

Zhu, Y.; Soon, C. O.; Huttley, G. A.

10.1101/342618 — bioinformatics — Posted on 2018-06-08

1887 The Evolution of Antibiotic Production Rate in a Spatial Model of Bacterial Competition

Kosakowski, J.; Verma, P.; Sengupta, S.; Higgs, P. G.

10.1101/342600 — evolutionary biology — Posted on 2018-06-08

1888 Microbial Dysbiosis and polyamine metabolism as predictive markers for early detection during progression of pancreatic adenocarcinoma in spontaneous mouse model

Mendez, R.; Kesh, K.; Arora, N.; Di Martino, L.; McAllister, F.; Merchant, N.; Banerjee, S.; Banerjee, S.

10.1101/342634 — cancer biology — Posted on 2018-06-08

1889 Unbiased Precision Estimation under Separate Sampling

Xie, S.; Braga-Neto, U.

10.1101/342626 — bioinformatics — Posted on 2018-06-08

1890 Integrating distal and proximal information to predict gene expression via a densely con-nected convolutional neural network

Zeng, W.; Wang, Y.; Jiang, R.

10.1101/341214 — bioinformatics — Posted on 2018-06-08

1891 Recording and reproducing the diurnal oviposition rhythms of wild populations of the soft- and stone- fruit pest Drosophila suzukii

Shaw, B.; Fountain, M. T.; Wijnen, H.

10.1101/342535 — animal behavior and cognition — Posted on 2018-06-08

1892 Low-Cost Solution for Rodent Home-Cage Behaviour Monitoring

Singh, S.; Bermudez-Contreras, E.; Nazari, M.; Sutherland, R. J.; Mohajerani, M.

10.1101/342501 — animal behavior and cognition — Posted on 2018-06-08

1893 A Narrative Systematic Review of Coaching Interventions to Improve Dyslexia at Work

Doyle, N. E.; McDowall, A.

10.1101/342584 — neuroscience — Posted on 2018-06-08

1894 Contrasted hybridization patterns between two local populations of European wildcats in France

Beugin, M.-P.; Salvador, O.; Leblanc, G.; Queney, G.; Natoli, E.; Pontier, D.

10.1101/342576 — ecology — Posted on 2018-06-08

1895 A novel amidase signature family amidase from the marine actinomycete Salinispora arenicola CNS-205

Ma, Y.; zhang, x.; Zeng, R.

10.1101/342527 — molecular biology — Posted on 2018-06-08

1896 Impact of Bactrocera oleae on the fungal microbiota of ripe olive drupes.

Abdelfattah, A.; Ruano-Rosa, D.; Cacciola, S. O.; Li Destri Nicosia, M. G.; Schena, L.

10.1101/342543 — microbiology — Posted on 2018-06-08

1897 Vitamin D and Macrophage Polarization in Epicardial Adipose Tissue of Atherosclerotic Swine

Gunasekar, P.; Swier, V. J.; Fleegel, J. P.; Boosani, C. S.; Radwan Ahmed, M. M.; Agrawal, D. K.

10.1101/342493 — immunology — Posted on 2018-06-08

1898 A promoter interaction map for cardiovascular disease genetics

Montefiori, L. E.; Sobreira, D. R.; Sakabe, N. J.; Aneas, I.; Joslin, A. C.; Hansen, G. T.; Bozek, G.; Moskowitz, I. P.; McNally, E. M.; Nobrega, M. A.

10.1101/340869 — genetics — Posted on 2018-06-08

1899 A Model Quantitative Assessment Tool for Nonhuman Primate Environmental Enrichment Plans

Dutton, M. B.; Pierre, P. J.; Bailoo, J.; Warkins, E.; Michel, G. F.; Bennett, A. J.

10.1101/341206 — animal behavior and cognition — Posted on 2018-06-08

1900 Contextual Influences on Value-based Choice

Man, V.; Kovacheff, C.; Cunningham, W. A.

10.1101/340695 — neuroscience — Posted on 2018-06-08

1901 Adaptive switch to sexually dimorphic movements by partner-seeking termites

Mizumoto, N.; Dobata, S.

10.1101/340919 — animal behavior and cognition — Posted on 2018-06-08

1902 Stem-loops direct precise processing of 3′ UTR-derived small RNA MicL

Updegrove, T. B.; Kouse, A. B.; Bandyra, K. J.; Storz, G.

10.1101/341578 — microbiology — Posted on 2018-06-08

1903 Role of DCP1-DCP2 complex regulated by viral and host microRNAs in DNA virus infection

Sun, Y.; Zhang, X.

10.1101/341362 — immunology — Posted on 2018-06-08

1904 The role of homology and orthology in the phylogenomic analysis of metazoan gene content

Pett, W.; Adamski, M.; Adamska, M.; Francis, W. R.; Eitel, M.; Pisani, D.; Woerheide, G.

10.1101/341115 — evolutionary biology — Posted on 2018-06-08

1905 Pinned, locked, pushed, and pulled traveling waves in structured environments

Wang, C.-H.; Matin, S.; B. George, A.; S. Korolev, K.

10.1101/341222 — ecology — Posted on 2018-06-08

1906 Usp16 modulates Wnt signaling in primary tissues through Cdkn2a regulation

Adorno, M.; Nicolis di Robilant, B.; Sikandar, S.; Haro Acosta, V.; Antony, J.; Heller, C.; Clarke, M.

10.1101/326272 — cell biology — Posted on 2018-06-08

1907 miR17~92 is essential for the survival of hematopoietic stem and progenitor cells by restraining pro-apoptotic BIM

Brinkmann, K.; Hyland, C.; de Graaf, C. A.; Strasser, A.; Alexander, W. S.; Herold, M. J.

10.1101/342071 — cell biology — Posted on 2018-06-08

1908 Cryptic Dispersal Networks Connect Habitat Patches in ways not Captured by Distance

Germain, R. M.; Jones, N. T.; Grainger, T. N.

10.1101/341123 — ecology — Posted on 2018-06-08

1909 Epidemiology of a bubonic plague outbreak in Glasgow, Scotland in 1900

Dean, K. R.; Krauer, F.; Schmid, B. V.

10.1101/340547 — epidemiology — Posted on 2018-06-07

1910 Fecal pollution explains antibiotic resistance gene abundances in anthropogenically impacted environments

Karkman, A.; Pärnänen, K.; Larsson, D. G. J.

10.1101/341487 — microbiology — Posted on 2018-06-07

1911 Adomaviruses: an emerging virus family provides insights into DNA virus evolution

Welch, N. L.; Yutin, N.; Dill, J. A.; Camus, A. C.; Pang, Y.-Y. S.; Schiller, J. T.; An, P.; Cantalupo, P. G.; Pipas, J. M.; Delwart, E.; Koda, S.; Subramaniam, K.; Waltzek, T. B.; Bian, C.; Shi, Q.; Ruan, Z.; Koonin, E. V.; Buck, C. B.; Ng, T. F. F.

10.1101/341131 — microbiology — Posted on 2018-06-07

1912 Tobacco TGA7 mediates gene expression dependent and independent of salicylic acid

Stos-Zweifel, V.; Neeley, D.; Konopka, E.; Meissner, M.; Hermann, M.; Maier, F.; Haefner, V.; Pfitzner, A. J. P.; Pfitzner, U. M.

10.1101/341834 — plant biology — Posted on 2018-06-07

1913 DivIVA concentrates mycobacterial cell envelope assembly for initiation and stabilization of polar growth

Melzer, E. S.; Sein, C. E.; Chambers, J. J.; Siegrist, M. S.

10.1101/341073 — microbiology — Posted on 2018-06-07

1914 HERC2 promotes BLM and WRN to suppress G-quadruplex DNA

Wu, W.; Rokutanda, N.; Takeuchi, J.; Lai, Y.; Maruyama, R.; Togashi, Y.; Nishikawa, H.; Arai, N.; Miyoshi, Y.; Suzuki, N.; Saeki, Y.; Tanaka, K.; Ohta, T.

10.1101/341420 — molecular biology — Posted on 2018-06-07

1915 Perception of environmental polypeptides in C. elegans activates insulin/IGF signaling and alters lipid metabolism

Kaplan, R. E. W.; Webster, A. K.; Chitrakar, R.; Dent, J. A.; Baugh, L. R.

10.1101/341883 — developmental biology — Posted on 2018-06-07

1916 RNA Binding Motif Protein 48 is required for U12 splicing and maize endosperm differentiation

Bai, F.; Corll, J.; Shodja, D.; Davenport, R.; Feng, G.; Mudunkothge, J.; Brigolin, C. J.; Martin, F.; Spielbauer, G.; Tseung, C.-W.; Seibert, A. E.; Barbazuk, W. B.; Lal, S.; Settles, A. M.

10.1101/341917 — plant biology — Posted on 2018-06-07

1917 Adaptation of actin dynamics and membrane tension control for yeast endocytosis

Lemiere, J.; Berro, J.

10.1101/342030 — cell biology — Posted on 2018-06-07

1918 Genome-wide fitness assessment during diurnal growth reveals an expanded role of the cyanobacterial circadian clock protein KaiA

Welkie, D. G.; Rubin, B. E.; Chang, Y.-G.; Diamond, S.; Rifkin, S. A.; LiWang, A.; Golden, S. S.

10.1101/283812 — microbiology — Posted on 2018-06-07

1919 Soluble CD93 is an Apoptotic Cell Opsonin Recognized by the αxβ2 Integrin

Blackburn, J. W. D.; Lau, D. H. C.; Ellins, J.; Kipp, A.; Pawlak, E. N.; Dikeakos, J. D.; Heit, B.

10.1101/341933 — immunology — Posted on 2018-06-07

1920 Published estimates of group differences in multisensory integration are inflated

Magnotti, J.; Beauchamp, M.

10.1101/331702 — neuroscience — Posted on 2018-06-07

1921 ASTN2 modulates synaptic strength by trafficking and degradation of surface proteins

Behesti, H.; Fore, T.; Wu, P.; Horn, Z.; Leppert, M.; Hull, C.; Hatten, M. E.

10.1101/337618 — neuroscience — Posted on 2018-06-07

1922 ERVcaller: Identifying and genotyping non-reference unfixed endogenous retroviruses (ERVs) and other transposable elements (TEs) using next-generation sequencing data

Chen, X.; Li, D.

10.1101/332833 — bioinformatics — Posted on 2018-06-07

1923 Linking single-cell measurements of mass, growth rate, and gene expression

Kimmerling, R. J.; Prakadan, S. M.; Gupta, A. J.; Calistri, N. L.; Stevens, M. M.; Olcum, S.; Cermak, N.; Drake, R. S.; Shalek, A. K.; Manalis, S. R.

10.1101/331686 — bioengineering — Posted on 2018-06-07

1924 Protein biocargo of citrus fruit-derived vesicles reveals heterogeneous transport and extracellular vesicles populations

Pocsfalvi, G.; Turiak, L.; Ambrosone, A.; Del Gaudio, P.; Puska, G.; Fiume, I.; Silvestre, T.; Vekey, K.

10.1101/321240 — plant biology — Posted on 2018-06-07

1925 Pervasive positive and negative feedback regulation of insulin like signaling in Caenorhabditis elegans

Maxwell, C. S.; Kaplan, R. E. W.; Codd, N. K.; Baugh, L. R.

10.1101/341685 — genetics — Posted on 2018-06-07

1926 Male pheromone composition depends on larval but not adult diet in Heliconius melpomene

Darragh, K.; Byers, K. J. R. P.; Merrill, R. M.; McMillan, W. O.; Schulz, S.; Jiggins, C. D.

10.1101/341602 — ecology — Posted on 2018-06-07

1927 Phosphorylation of a Toxoplasma gondii tyrosine transporter by calcium-dependent kinase 3 is important for parasite fitness

Wallbank, B. A.; Dominicus, C. S.; Broncel, M.; Legrave, N.; MacRae, J. I.; Staines, H. M.; Treeck, M.

10.1101/339671 — microbiology — Posted on 2018-06-07

1928 IFITM3 restricts human metapneumovirus infection

McMichael, T. M.; Zhang, Y.; Kenney, A. D.; Zhang, L.; Zani, A.; Lu, M.; Chemudupati, M.; Li, J.; Yount, J. S.

10.1101/290957 — immunology — Posted on 2018-06-07

1929 The Chromatin-binding Protein Spn1 contributes to Genome Instability in Saccharomyces cerevisiae

Thurston, A.; Radebaugh, C. A.; Almeida, A. R.; Argueso, J. L.; Stargell, L. A.

10.1101/341768 — genetics — Posted on 2018-06-07

1930 The IICR and the Non-Stationary Structured Coalescent: demographic inference with arbitrary changes in population structure

Rodriguez, W. R.; Mazet, O.; Grusea, S.; Boitard, S.; Chikhi, L.

10.1101/341750 — evolutionary biology — Posted on 2018-06-07

1931 SKEMPI 2.0: An updated benchmark of changes in protein-protein binding energy, kinetics and thermodynamics upon mutation

Jankauskaite, J.; Jimenez-Garcia, B.; Dapkunas, J.; Fernandez-Recio, J.; Moal, I. H.

10.1101/341735 — bioinformatics — Posted on 2018-06-07

1932 Multiple optic gland signaling pathways implicated in octopus maternal behaviors and death

Wang, Z. Y.; Ragsdale, C. W.

10.1101/340984 — animal behavior and cognition — Posted on 2018-06-07

1933 Unsupervised discovery of temporal sequences in high-dimensional datasets, with applications to neuroscience

Mackevicius, E. L.; Bahle, A. H.; Williams, A. H.; Gu, S.; Denissenko, N. I.; Goldman, M. S.; Fee, M. S.

10.1101/273128 — neuroscience — Posted on 2018-06-07

1934 Evidence of ventral stream computations in rat lateral extrastriate cortex

Rosselli, F. B.; Matteucci, G.; Bellacosa Marotti, R.; Zoccolan, D.

10.1101/341792 — neuroscience — Posted on 2018-06-07

1935 Diverse lineages of Candida albicans live on old oaks

Bensasson, D.; Dicks, J.; Ludwig, J. M.; Bond, C. J.; Elliston, A.; Roberts, I. N.; James, S. A.

10.1101/341032 — genomics — Posted on 2018-06-07

1936 Nucleolar stress causes the entry into replicative senescence in budding yeast

Morlot, S.; Song, J.; Leger-Silvestre, I.; Matifas, A.; Gadal, O.; Charvin, G.

10.1101/297093 — cell biology — Posted on 2018-06-07

1937 Computational enhancement of single-cell sequences for inferring tumor evolution

Miura, S.; Huuki, L. A.; Buturla, T.; Vu, T.; Gomez, K.; Kumar, S.

10.1101/341743 — cancer biology — Posted on 2018-06-07

1938 A fast mrMLM algorithm for multi-locus genome-wide association studies

Zhang, Y.-M.; Tamba, C. L.

10.1101/341784 — bioinformatics — Posted on 2018-06-07

1939 Blue-green opponency and trichromatic vision in the greenhouse whitefly (Trialeurodes vaporariorum)

Stukenberg, N.; Poehling, H.-M.

10.1101/341610 — animal behavior and cognition — Posted on 2018-06-07

1940 Effect of Heterogeneity in Recombination Rate on Variation in Realised Relationship

White, I.; Hill, W. G.

10.1101/341776 — genetics — Posted on 2018-06-07

1941 Complex associations of environmental factors may explain Blanchard’s Cricket Frog, Acris blanchardi declines and drive population recovery

McCallum, M. L.; Trauth, S. E.

10.1101/272161 — ecology — Posted on 2018-06-07

1942 Requirements for coregistration accuracy in on-scalp MEG

Zetter, R.; Iivanainen, J.; Stenroos, M.; Parkkonen, L.

10.1101/176545 — neuroscience — Posted on 2018-06-07

1943 Efficient pedigree recording for fast population genetics simulation

Kelleher, J.; Thornton, K.; Ashander, J.; Ralph, P.

10.1101/248500 — bioinformatics — Posted on 2018-06-07

1944 Ketamine disrupts neuromodulatory control of glutamatergic synaptic transmission.

Lur, G.; Higley, M.

10.1101/341172 — neuroscience — Posted on 2018-06-07

1945 A Neuroeconomic Framework for Creative Cognition

Lin, H.; Vartanian, O.

10.1101/184754 — neuroscience — Posted on 2018-06-07

1946 De novo origin of multicellularity in response to predation

Herron, M. D.; Borin, J. M.; Boswell, J. C.; Walker, J.; Chen, I.-C. K.; Knox, C. A.; Boyd, M.; Rosenzweig, F.; Ratcliff, W. C.

10.1101/247361 — evolutionary biology — Posted on 2018-06-07

1947 Spatiotemporally controlled genetic perturbation for efficient large-scale studies of cell non-autonomous effects

Sousa-Nunes, R.; Chai, A.; Mateus, A. M.; Oozeer, F.

10.1101/341560 — developmental biology — Posted on 2018-06-07

1948 Influence of miR-520e-mediated MAPK signaling pathway on HBV replication and regulation of hepatocellular carcinoma cells via targeting EphA2

Tian, J.-h.; Liu, W.-d.; Zhang, Z.-y.; Tang, L.-h.; Li, D.; Tian, Z.-j.; Lin, S.-w.; Li, Y.-j.

10.1101/341511 — cancer biology — Posted on 2018-06-07

1949 Cooperative Non-bonded Forces Control Membrane Binding of the pH-Low Insertion Peptide pHLIP

Gupta, C.; Ren, Y.; Mertz, B.

10.1101/341628 — biophysics — Posted on 2018-06-07

1950 Thermodynamic constraints on the regulation of metabolic fluxes

Dai, Z.; Locasale, J. W.

10.1101/341271 — biophysics — Posted on 2018-06-07

1951 Staphylococcus aureus Cas9 is a multiple-turnover enzyme

Yourik, P.; Fuchs, R. T.; Mabuchi, M.; Curcuru, J. L.; Robb, G. B.

10.1101/340042 — biochemistry — Posted on 2018-06-07

1952 Single olfactory receptors set odor detection thresholds

Dewan, A.; Cichy, A.; Zhang, J.; Miguel, K.; Feinstein, P.; Rinberg, D.; Bozza, T.

10.1101/341099 — neuroscience — Posted on 2018-06-07

1953 The fungal-specific Hda2 and Hda3 proteins regulate morphological switches in the human fungal pathogen Candida albicans.

Peterson, M.; Price, R. J.; Gourlay, S.; May, A.; Tullet, J.; Buscaino, A.

10.1101/340364 — microbiology — Posted on 2018-06-07

1954 Direct preparation of Cas9 ribonucleoprotein from E. coli for PCR-free seamless DNA assembly

li, w.; li, s.; qiao, j.; wang, f.; liu, y.; he, r.; liu, y.; ma, l.

10.1101/328468 — synthetic biology — Posted on 2018-06-07

1955 Microtubule plus-tips act as signaling hubs for positioning the cleavage furrow during cytokinesis.

Verma, V.; Maresca, T. J.

10.1101/339119 — cell biology — Posted on 2018-06-07

1956 Identification of genes affecting saturated fat acid content in Elaeis guineensis by genome-wide association analysis

Xia, W.; Luo, T.; Zhang, W.; Mason, A. S.; Huang, D.; Huang, X.; Tang, W.; Dou, Y.; Zhang, C.; Xiao, Y.

10.1101/341347 — plant biology — Posted on 2018-06-07

1957 Dynamics and spatial genomics of the nascent transcriptome in single mESCs by intron seqFISH

Shah, S.; Takei, Y.; Zhou, W.; Lubeck, E.; Yun, J.; Koulena, N.; Liaw, E. J.; Amin, M.; Cai, L.

10.1101/339234 — systems biology — Posted on 2018-06-07

1958 Tissue spatial correlation as cancer marker

Takabayashi, M.; Majeed, H.; Kajdacsy-Balla, A.; Popescu, G.

10.1101/340372 — pathology — Posted on 2018-06-07

1959 Correction of respiratory artifacts in MRI head motion estimates

Fair, D. A.; Miranda-Dominguez, O.; Snyder, A. Z.; Perrone, A. A.; Earl, E. A.; Van, A. N.; Koller, J. M.; Feczko, E.; Klein, R. L.; Mirro, A. E.; Hampton, J. M.; Adeyemo, B.; Laumann, T. O.; Gratton, C.; Greene, D. J.; Schlaggar, B.; Hagler, D.; Watts, R.; Garavan, H.; Barch, D. M.; Nigg, J. T.; Petersen, S. E.; Dale, A.; Feldstein-Ewing, S. W.; Nagel, B. J.; Dosenbach, N. U. F.

10.1101/337360 — neuroscience — Posted on 2018-06-07

1960 PorSignDB: a database of in vivo perturbation signatures for dissecting clinical outcome of PCV2 infection

Van Renne, N.; Wei, R.; Pochet, N.; Nauwynck, H.

10.1101/341644 — microbiology — Posted on 2018-06-07

1961 A type 2 diabetes disease module with a high collective influence for Cdk2 and PTPLAD1 is localized in endosomes

Boutchueng-Djidjou, M.; Belleau, P.; Bilodeau, N.; Fortier, S.; Bourassa, S.; Droit, A.; Elowe, S.; Faure, R.

10.1101/341693 — genomics — Posted on 2018-06-07

1962 Multiple optic gland signaling pathways implicated in octopus maternal behaviors and death

Wang, Z. Y.; Ragsdale, C. W.

10.1101/340984 — animal behavior and cognition — Posted on 2018-06-07

1963 Network Reconstruction from Perturbation Time Course Data

Smith, G. R.; Bouhaddou, M.; Stern, A. D.; Anglin, C. M.; Zadeh, O. M.; Erskin, J.; Birtwistle, M.

10.1101/341008 — systems biology — Posted on 2018-06-07

1964 A Neuroeconomic Framework for Creative Cognition

Lin, H.; Vartanian, O.

10.1101/184754 — neuroscience — Posted on 2018-06-07

1965 The genomic landscape of recombination rate variation in Chlamydomonas reinhardtii reveals effects of linked selection

Hasan, A. R.; Ness, R. W.

10.1101/340992 — evolutionary biology — Posted on 2018-06-07

1966 Associations between Afrotropical bats, parasites, and microbial symbionts

Lutz, H. L.; Jackson, E. W.; Webala, P. W.; Babyesiza, W. S.; Kerbis Peterhans, J. C.; Demos, T. C.; Patterson, B. D.; Gilbert, J. A.

10.1101/340109 — ecology — Posted on 2018-06-07

1967 Captivity and exposure to the emerging fungal pathogen Batrachochytrium salamandrivorans are linked to perturbation and dysbiosis of the amphibian skin microbiome

Bates, K. A.; Shelton, J. M.; Mercier, V. L.; Hopkins, K. P.; Harrison, X. A.; Petrovan, S. O.; Fisher, M. C.

10.1101/339853 — ecology — Posted on 2018-06-07

1968 Ecological Network assembly: how the regional meta web influence local food webs

Saravia, L. A.; Marina, T. I.; De Troch, M.; Momo, F. R.

10.1101/340430 — ecology — Posted on 2018-06-07

1969 Phase-type distributions in population genetics

Hobolth, A.; Siri-Jegousse, A.; Bladt, M.

10.1101/340182 — bioinformatics — Posted on 2018-06-07

1970 Predicting the effects of epidural stimulation to improve hand function in patients with spinal cord injury: An active learning-based solution using dynamic sample weighting

Kachuee, M.; Hoffman, H.; Moore, L. D.; Damavandi, H. G.; Homsey, T.; Moatamed, B.; Hosseini, A.; Huang, R.; Leiter, J. C.; Sarrafzadeh, M.; Lu, D. C.

10.1101/341719 — neuroscience — Posted on 2018-06-07

1971 A Generative Growth Model for Thalamocortical Axonal Branching in Primary Visual Cortex

Kassraian Fard, P.; Pfeiffer, M.; Bauer, R.

10.1101/288522 — neuroscience — Posted on 2018-06-07

1972 Open source modules for tracking animal behavior and closed-loop stimulation based on Open Ephys and Bonsai

Buccino, A. P.; Lepperod, M. E.; Dragly, S.-A.; Hafliger, P. D.; Fyhn, M.; Hafting, T.

10.1101/340141 — neuroscience — Posted on 2018-06-07

1973 A novel cell-free method to culture Schistosoma mansoni from cercariae to juvenile worm stages for in vitro drug testing

Frahm, S.; Anisuzzaman, A.; Prodjinotho, F.; Verschoor, A.; Prazeres da Costa, C.

10.1101/341669 — microbiology — Posted on 2018-06-07

1974 Understanding the Liver Under Heat Stress With Statistical Learning: A Multiomics Computational Approach

Hubbard, A. H.; Zhang, X.; Singh, A.; Jastrebski, S.; Schmidt, C.

10.1101/340125 — genomics — Posted on 2018-06-07

1975 Multiple myeloma immunoglobulin lambda translocations portend poor prognosis

Barwick, B. G.; Neri, P.; Bahlis, N. J.; Nooka, A. K.; Kaufman, J. L.; Gupta, V. A.; Auclair, D.; Keats, J. J.; Lonial, S.; Vertino, P. M.; Boise, L. H.

10.1101/340877 — genomics — Posted on 2018-06-07

1976 Identifying Mechanisms of Regulation to Model Carbon Flux During Heat Stress And Generate Testable Hypotheses

Hubbard, A.; Zhang, X.; Singh, A.; Jastrebski, S.; Lamont, S.; Schmidt, C. J.

10.1101/340950 — genomics — Posted on 2018-06-07

1977 Increased adaptability to rapid environmental change can more than make up for the two-fold cost of males

Holmes, C. M.; Nemenman, I.; Weissman, D. B.

10.1101/340927 — evolutionary biology — Posted on 2018-06-07

1978 Inversion frequencies and phenotypic effects are modulated by the environment

Berdan, E.; Rosenquist, H.; Larson, K.; Wellenreuther, M.

10.1101/295568 — evolutionary biology — Posted on 2018-06-07

1979 The demographic history of African Drosophila melanogaster

Kapopoulou, A.; Pfeifer, S. P.; Jensen, J. D.; Laurent, S.

10.1101/340406 — evolutionary biology — Posted on 2018-06-07

1980 Revisiting the phylogeny of Ficus (Moraceae): When Next Generation Sequencing corroborates Past Generation Botanists

Rasplus, J.-Y.; Rodriguez, L. J.; Tollon-Cordet, C.; Cruaud, A.

10.1101/340463 — evolutionary biology — Posted on 2018-06-07

1981 An evolutionary compass for elucidating selection mechanisms shaping complex traits

Uricchio, L. H.; Kitano, H. C.; Gusev, A.; Zaitlen, N. A.

10.1101/173815 — evolutionary biology — Posted on 2018-06-07

1982 Longitudinal changes in the prevalence and intensity of soil-transmitted helminth infection following expanded community-wide mass drug administration in the delta region of Myanmar

Dunn, J. C.; Bettis, A. A.; Wyine, N. Y.; Lwin, A. M. M.; Tun, A.; Maung, N. S.; Anderson, R. M.

10.1101/341677 — epidemiology — Posted on 2018-06-07

1983 Seasonality controls the predictive skills of diatom based salinity transfer functions

Goldenberg Vilar, A.; Donders, T.; Cvetkoska, A.; Wagner-Cremer, F.

10.1101/341446 — ecology — Posted on 2018-06-07

1984 How many, and when? Optimising targeted gene flow for a step change in the environment

Kelly, E. L.; Phillips, B.

10.1101/341339 — ecology — Posted on 2018-06-07

1985 RBV: Read balance validator, a tool for prioritising copy number variations in germline conditions

Whitford, W.; Lehnert, K.; Snell, R. G.; Jacobsen, J. C.

10.1101/340166 — bioinformatics — Posted on 2018-06-07

1986 Integrated fusible alloy microelectrodes based microfluidic impedance cytometry for cell-in-droplet quantification

Panwar, J.; Roy, R.

10.1101/278069 — bioengineering — Posted on 2018-06-07

1987 Brain regions modulated during covert visual attention in the macaque

Bogadhi, A. R.; Bollimunta, A.; Leopold, D. A.; Krauzlis, R. J.

10.1101/340703 — animal behavior and cognition — Posted on 2018-06-07

1988 Cable Energy Function of Cortical Axons: Equivalent Formulas

Yu, Y.; Jiao, Z.

10.1101/341701 — neuroscience — Posted on 2018-06-07

1989 Finding decodable information that can be read out in behaviour

Grootswagers, T.; Cichy, R. M.; Carlson, T.

10.1101/248583 — neuroscience — Posted on 2018-06-07

1990 Beyond SNP Heritability: Polygenicity and Discoverability Estimated for Multiple Phenotypes with a Univariate Gaussian Mixture Model

Holland, D.; Frei, O.; Fan, C.-C.; Shadrin, A. A.; Smeland, O. B.; Sundar, V. S.; Thompson, P.; Andreassen, O. A.; Dale, A. M.

10.1101/133132 — genomics — Posted on 2018-06-07

1991 Identification of a Nocardia seriolae secreted protein targeting host cell mitochondria and inducing apoptosis in fathead minnow (FHM) cells

Chen, J.; wang, W.; Xia, L.; Wang, Z.; Lu, Y.; Huang, J.; Hou, S.

10.1101/341651 — pathology — Posted on 2018-06-07

1992 The reduced prevalence of macrolide resistance in Mycoplasma pneumoniae clinical isolates from pediatric patients in Beijing in 2016

Tian, X. j.; Wei, R.; Shao, J. y.; Wang, H.; Li, J.; Zhou, W.; Qin, X. g.; Hu, Y. h.; Dou, H.; Guo, D.; Li, J.; Li, D.; Xu, B.; Xin, D.

10.1101/339317 — microbiology — Posted on 2018-06-07

1993 The effect of susceptible and resistant potato cultivars on bacterial communities in the tuberosphere of potato in soil suppressive or conducive to common scab disease

Sagova-Mareckova, M.; Kopecky, J.; Samkova, Z.; Sarikhani, E.; Kyselkova, M.; Omelka, M.; Kristufek, V.; Divis, J.; Grundmann, G.; Moënne-Loccoz, Y.

10.1101/340257 — microbiology — Posted on 2018-06-07

1994 Comparison of trimethoprim-sulfamethoxazole versus ciprofloxacin monotherapy in Stenotrophomonas maltophilia bloodstream infections in children

Aksay, A.; Devrim, I.; Katipoglu, N.; Bayram, N.; Arslanoglu, S.; Calkavur, S.; Gülfidan, G.; Ceylan, G.; Agin, H.

10.1101/339291 — microbiology — Posted on 2018-06-07

1995 Homogenization of sub-genome secretome gene expression patterns in the allodiploid fungus Verticillium longisporum

Depotter, J.; van Beveren, F.; Rodriguez-Moreno, L.; van den Berg, G.; Wood, T.; Thomma, B.; Seidl, M.

10.1101/341636 — microbiology — Posted on 2018-06-07

1996 TACAN is an essential component of the mechanosensitive ion channel responsible for pain sensing

Beaulieu-Laroche, L.; Christin, M.; Donoghue, A.; Agosti, F.; Yousefpour, N.; Petitjean, H.; Davidova, A.; Stanton, C.; Khan, U.; Dietz, C.; Faure, E.; Fatima, T.; MacPherson, A.; Ribeiro-Da-Silva, A.; Bourinet, E.; Blunck, R.; Sharif-Naeini, R.

10.1101/338673 — neuroscience — Posted on 2018-06-07

1997 Novel Wolbachia strains in Anopheles malaria vectors from Sub-Saharan Africa

Jeffries, C. L.; Golovko, G.; Kristan, M.; Orsborne, J.; Spence, K.; Hurn, E.; Bandibabone, J.; Tantely, L. M.; Raharimalala, F. N.; Keita, K.; Camara, D.; Barry, Y.; Watsenga, F.; Manzambi, E. Z.; Afrane, Y. A.; Mohammed, A. R.; Abeku, T. A.; Hegde, S.; Khanipov, K.; Pimenova, M.; Fofanov, Y.; Boyer, S.; Hughes, G. L.; Walker, T.

10.1101/338434 — microbiology — Posted on 2018-06-07

1998 Epstein-Barr Virus May Contribute to Central Nervous System Involvement in HIV-positive Individuals

Lupia, T.; Milia, M. G.; atzori, c.; Audagnotto, S.; imperiale, d.; mighetto, l.; pirriatore, v.; Gregori, G.; lipani, f.; Ghisetti, V.; Bonora, S.; Di Perri, G.; Calcagno, A.

10.1101/341354 — microbiology — Posted on 2018-06-07

1999 Diverse lineages of Candida albicans live on old oaks

Bensasson, D.; Dicks, J.; Ludwig, J. M.; Bond, C. J.; Elliston, A.; Roberts, I. N.; James, S. A.

10.1101/341032 — genomics — Posted on 2018-06-07

2000 Differential Expression of Immune Related Genes in Taste Buds of Fed and Fasted Mice

Crosson, S. M.; Currlin, S.; Moskalenko, O.; Yegorova, S.; Dotson, C. D.; Zolotukhin, S.

10.1101/339911 — bioinformatics — Posted on 2018-06-07

2001 Characterisation and structure determination of a llama-derived nanobody targeting the J-base binding protein 1

van Beusekom, B.; Heidebrecht, T.; Adamopoulos, A.; Fish, A.; Pardon, E.; Steyaert, J.; Joosten, R.; Perrakis, A.

10.1101/340778 — biochemistry — Posted on 2018-06-07

2002 Pan-cancer analysis of RNA binding proteins (RBPs) reveals the involvement of the core pre-mRNA splicing and translation machinery in tumorigenesis

Zhang, B.; Rajendra Babu, K.; Lim, C. Y.; Kwok, Z. H.; Li, J.; Zhou, S.; Yang, H.; Tay, Y.

10.1101/341263 — systems biology — Posted on 2018-06-07

2003 Nucleus reuniens is required for encoding and retrieving precise contextual fear memories in rats

Ramanathan, K. R.; Jin, J.; Ressler, R. L.; Maren, S.

10.1101/340190 — neuroscience — Posted on 2018-06-07

2004 Antiviral viral compound from Streptomyces ghanaensis like strain against white spot syndrome virus (WSSV) of shrimp

Sahul Hameed, A. S.; Rajkumar, T.; Manimaran, M.; Taju, G.; Vimal, S.; Abdul Majeed, S.; Kannabiran, K.; Sivakumar, S.; Kumar, K. M.; Madhan, S.

10.1101/340265 — molecular biology — Posted on 2018-06-07

2005 Mitochondrial citrate transporters CtpA and YhmA are involved in lysine biosynthesis in the white koji fungus, Aspergillus luchuensis mut. kawachii

Kadooka, C.; Izumitsu, K.; Onoue, M.; Okutsu, K.; Yoshizaki, Y.; Takamine, K.; Goto, M.; Tamaki, H.; Futagami, T.

10.1101/341370 — microbiology — Posted on 2018-06-07

2006 Chance and pleiotropy dominate genetic diversity in complex bacterial environments

Noda-Garcia, L.; Davidi, D.; Korenblum, E.; Elazar, A.; Putintseva, E.; Aharoni, A.; Tawfik, D. S.

10.1101/340828 — microbiology — Posted on 2018-06-07

2007 Cell type-dependent differential activation of ERK by oncogenic KRAS or BRAF in the mouse intestinal epithelium

Brandt, R.; Uhlitz, F.; Riemer, P.; Giesecke, C.; Schulze, S.; El-Shimy, I. A.; Fauler, B.; Mielke, T.; Mages, N.; Herrmann, B. G.; Sers, C.; Bluethgen, N.; Morkel, M.

10.1101/340844 — cell biology — Posted on 2018-06-07

2008 Different SUMO Paralogs Determine the Fate of WT and Mutant CFTRs: Biogenesis vs. Degradation

Gong, X.; Liao, Y.; Ahner, A.; Larsen, M. B.; Wang, X.; Bertrand, C.; Frizzell, R. A.

10.1101/340851 — cell biology — Posted on 2018-06-07

2009 Comprehensive 2D and 3D phenotypic characterization of human invasive lobular carcinoma cell lines

Tasdemir, N.; Bossart, E.; Li, Z.; Li, Z.; Levine, K. M.; Jacobsen, B. M.; Tseng, G. C.; Davidson, N. E.; Oesterreich, S.

10.1101/341313 — cancer biology — Posted on 2018-06-07

2010 Predicting clone genotypes from tumor bulk sequencing of multiple samples

Miura, S.; Gomez, K.; Murillo, O.; Huuki, L. A.; Vu, T.; Buturla, T.; Kumar, S.

10.1101/341180 — cancer biology — Posted on 2018-06-07

2011 Quantitative Late Quaternary climate reconstruction from plant macrofossil proxy in Western North America

Harbert, R.; Nixon, K.

10.1101/340208 — paleontology — Posted on 2018-06-07

2012 Calcium activation of frequency dependent temporally phasic, localized, and dense population of cortical neurons by continuous electrical stimulation

Michelson, N. J.; Islam, R.; Vazquez, A. L.; Ludwig, K. A.; Kozai, T. D. Y.

10.1101/338525 — neuroscience — Posted on 2018-06-07

2013 FluoEM: Virtual labeling of axons in 3-dimensional electron microscopy data for long-range connectomics

Drawitsch, F.; Karimi, A.; Boergens, K. M.; Helmstaedter, M.

10.1101/340802 — neuroscience — Posted on 2018-06-07

2014 PI(4,5)P2 Binding Sites in the Ebola Virus Matrix Protein Modulate Assembly and Budding

Johnson, K. A.; Budicini, M. R.; Urata, S.; Bhattarai, N.; Gerstman, B. S.; Chapagain, P. P.; Li, S.; Stahelin, R. V.

10.1101/341248 — microbiology — Posted on 2018-06-07

2015 Identification and removal of sequencing artifacts produced by mispriming during reverse transcription in multiple RNA-seq technologies

Shivram, H.; Iyer, V. R.

10.1101/339887 — genomics — Posted on 2018-06-07

2016 Whole genome sequencing, de novo assembly and phenotypic profiling for the new budding yeast species Saccharomyces jurei

Naseeb, S.; Alsammar, H.; Burgis, T.; Donaldson, I.; Knyazev, N.; Knight, C.; Delneri, D.

10.1101/339929 — genomics — Posted on 2018-06-07

2017 Abundance drives generalisation in hummingbird-plant pollination networks

Simmons, B. I.; Vizentin-Bugoni, J.; Maruyama, P. K.; Cotton, P. A.; Marin-Gomez, O. H.; Lara, C.; Lasprilla, L. R.; Maglianesi, M. A.; Ortiz-Pulido, R.; Rocca, M. A.; Rodrigues, L. C.; Tinoco, B.; Vasconcelos, M. F.; Sazima, M.; Martin Gonzalez, A. M.; Sonne, J.; Rahbek, C.; Dicks, L. V.; Dalsgaard, B.; Sutherland, W. J.

10.1101/339762 — ecology — Posted on 2018-06-07

2018 Effect of mounding, drainage and fertilization on CH4 fluxes and methane-cycling functional genes in waterlogged forest stands

Levy-Booth, D. J.; Prescott, C. E.; Grayston, S. J.

10.1101/339978 — ecology — Posted on 2018-06-07

2019 Effective repair of joint cartilage using human pluripotent stem cell-derived tissue

Gardner, O. F. W.; Juneja, S.; Whetstone, H.; Nartiss, Y.; Sieker, J. T.; Veillette, C.; Keller, G. M.; Craft, A. M.

10.1101/340935 — developmental biology — Posted on 2018-06-07

2020 Pinetree: a step-wise gene expression simulator with codon-specific translation rates

Jack, B. R.; Wilke, C. O.

10.1101/339994 — systems biology — Posted on 2018-06-07

2021 Corilagin controls post-parasiticide schistosome egg-induced liver fibrosis by inhibiting Stat6 signalling pathway

Zhao, L.; Du, P.; Ma, Q.; Xiong, J.; Wang, Y.; Yang, F.; Jin, F.; Chen, Y.-F.; Shang, Z.-Z.; Chen, Z.-L.; Zhou, X.; Li, H.-R.

10.1101/340299 — pharmacology and toxicology — Posted on 2018-06-07

2022 Re-programming of Pseudomonas syringae pv. actinidiae gene expression during early stages of infection of kiwifruit

McAtee, P.; Brian, L.; Curran, B.; van der Linden, O.; Nieuwenhuizen, N.; Henry-Kirk, R.; Nardozza, S.; Rikkerink, E. H. A.; Print, C.; Allan, A. C.; Templeton, M. D.

10.1101/340018 — microbiology — Posted on 2018-06-07

2023 Site-directed mutagenesis of the 1,3-β glucan synthase catalytic subunit of Pneumocystis jirovecii and susceptibility assays suggest its sensitivity to caspofungin

Luraschi, A.; Richard, S.; Hauser, P. M.

10.1101/340281 — microbiology — Posted on 2018-06-07

2024 Molecular basis for the evolution of species-specific hemoglobin capture by pathogenic Staphylococcus

Choby, J. E.; Buechi, H. B.; Farrand, A. J.; Skaar, E. P.; Barber, M. F.

10.1101/339705 — microbiology — Posted on 2018-06-07

2025 Genome-wide abundance of 5-hydroxymethylcytosine in breast tissue reveals unique function in dynamic gene regulation and carcinogenesis

Wilkins, O. M.; Johnson, K. C.; Houseman, E. A.; King, J. E.; Marsit, C. J.; Christensen, B. C.

10.1101/339069 — genomics — Posted on 2018-06-07

2026 Transmission cycles generate diversity in pathogenic viruses

Sigal, D.; Reid, J. N. S.; Wahl, L. M.

10.1101/339861 — evolutionary biology — Posted on 2018-06-07

2027 Contextual influence on confidence judgments in human reinforcement learning.

Lebreton, M.; Bacily, K.; Palminteri, S.; Engelmann, J. B.

10.1101/339382 — animal behavior and cognition — Posted on 2018-06-07

2028 Adversarial childhood events are associated with Sudden Infant Death Syndrome (SIDS): an ecological study

Elhaik, E.

10.1101/339465 — pathology — Posted on 2018-06-07

2029 Data-Constrained Biophysical Modeling Of Human VIM To Assess Contributions Of Intrinsic Oscillatory Activity To Essential Tremor

Lee, S.; Segar, D. J.; Asaad, W.; Jones, S.

10.1101/339846 — neuroscience — Posted on 2018-06-07

2030 Molecular tools for phytoplankton monitoring samples

Frazao, B.; Silva, A.

10.1101/339655 — molecular biology — Posted on 2018-06-07

2031 Nano-particles constructed from Chaetomium cochliodes CTh05 against Magnaporthe oryzae causing rice blast

Song, J. J.; Kanokmedhakul, S.; Kanokmedhkul, K.; Poeaim, S.; Soytong, K.

10.1101/339283 — microbiology — Posted on 2018-06-07

2032 Recovered and dead outcome patients caused by influenza A (H7N9) virus infection show different pro-inflammatory cytokine dynamics during disease progress and its application in real-time prognosis

Liu, Y.; Wang, X.; Zhu, H.; Ma, J.; Lu, Z.; Yuan, J.; Li, J.; Li, J.; Ren, Y.; Wen, B.; Ouyang, W.; Zheng, H.; Zou, R.; Bi, Y.; Yin, C.; Guo, Z.; Sun, W.; Pei, N.; Li, J.; Zhu, S.; Yang, H.; Liu, L.; Xu, X.; Liu, S.; Wang, H.; Li, L.

10.1101/339333 — immunology — Posted on 2018-06-07

2033 Parkour LIMS: facilitating high-quality sample preparation in next generation sequencing

Anatskiy, E.; Ryan, D. P.; Gruening, B.; Arrigoni, L.; Manke, T.; Boenisch, U.

10.1101/338533 — genomics — Posted on 2018-06-07

2034 Functional lability of RNA-dependent RNA polymerases in animals

Pinzon, N.; Bertrand, S.; Subirana, L.; Busseau, I.; Escriva, H.; Seitz, H.

10.1101/339820 — evolutionary biology — Posted on 2018-06-07

2035 A two-locus hybrid incompatibility is widespread, polymorphic, and active in natural populations of Mimulus

Zuellig, M. P.; Sweigart, A. L.

10.1101/339986 — evolutionary biology — Posted on 2018-06-07

2036 Transcribed microsatellites often influence gene expression in natural sunflower populations

Ranathunge, C.; Wheeler, G. L.; Chimahusky, M.; Perkins, A. D.; Pramod, S.; Welch, M. E.

10.1101/339903 — evolutionary biology — Posted on 2018-06-07

2037 metagenomeFeatures: An R package for working with 16S rRNA reference databases and marker-gene survey feature data.

Olson, N. D.; Shah, N.; Kancherla, J.; Wagner, J.; Paulson, J.; Corrada Bravo, H.

10.1101/339812 — bioinformatics — Posted on 2018-06-07

2038 Zombi: A simulator of species, genes and genomes that accounts for extinct lineages.

Davin, A. A.; Tricou, T.; Tannier, E.; de Vienne, D. M.; Szollosi, G. J.

10.1101/339473 — bioinformatics — Posted on 2018-06-07

2039 Restoring striatal WAVE-1 improves maze exploration performance of GluN1 knockdown mice

Chen, Y.; Milenkovic, M.; Salahpour, A.; Soderling, S. H.; Ramsey, A. J.

10.1101/341479 — neuroscience — Posted on 2018-06-07

2040 Kernel machine tests of association between brain networks and phenotypes

Jensen, A. M.; Tregellas, J. R.; Sutton, B.; Xing, F.; Ghosh, D.

10.1101/341495 — neuroscience — Posted on 2018-06-07

2041 A Fixed Moderate-dose Combination of Tiletamine+Zolazepam Outperforms Midazolam in Induction of Short-term Immobilization of Ball Pythons (Python regius)

Miller, L.; Fetterer, D.; Lackemeyer, N.; Lackemeyer, M.; Donnelly, G.; Steffens, J.; Van Tongeren, S.; Fiallos, J.; Moore, J.; Marko, S.; Lugo-Roman, L.; Fedewa, G.; DeRisi, J.; Kuhn, J. H.; Stahl, S.

10.1101/341438 — zoology — Posted on 2018-06-07

2042 Retinoblastoma 1 (RB1) modulates the proliferation of chicken preadipocytes

Wang, Y.-X.; Wang, H.-X.; Na, W.; Qin, F.-Y.; Zhang, Z.-W.; Dong, J.-Q.; Li, H.; Zhang, H.

10.1101/341453 — genetics — Posted on 2018-06-07

2043 Long-term acclimation to different stress types: revealing tradeoffs between mesophyll and stomatal conductance

Zait, Y.; Stein, I.; Schwartz, A.

10.1101/340786 — plant biology — Posted on 2018-06-06

2044 Propofol inhibits endogenous formyl peptide-induced neutrophil activation and alleviates lung injury

Chen, C.-Y.; Tsai, Y.-F.; Huang, W.-J.; Chang, S.-H.; Hwang, T.-L.

10.1101/340711 — pharmacology and toxicology — Posted on 2018-06-06

2045 The stress hormone cortisol induces virulence in the oral microbiome

Duran-Pinedo, A. E.; Solbiati, J.; Frias-Lopez, J.

10.1101/339325 — microbiology — Posted on 2018-06-06

2046 The key lethal effect existed in the antibacterial behavior of short, medium, and long chain fatty acid monoglycerides on Escherichia coli

Zhang, S.; Xiong, J.; Lou, W.; Ning, Z.; Zhang, D.; Yang, J.

10.1101/339309 — microbiology — Posted on 2018-06-06

2047 Mass Mortality of Wood Frogs (Rana sylvatica) in the Ozark National Forest: Is it Acid Rain?

McCallum, M. L.; Klotz, T.; Stephens, W.; Bouldin, J. L.; Gillespie, K.; Feldman, D.; Wheeler, B. A.; Trauth, S. E.

10.1101/338970 — ecology — Posted on 2018-06-06

2048 Defining the seafloor microbiome of the Gulf of Mexico and its response to oil perturbation

Overholt, W. A.; Schwing, P.; Hastings, D.; Hollander, D. J.; Kostka, J. E.

10.1101/236950 — ecology — Posted on 2018-06-06

2049 Repurposing the quinoline antibiotic nitroxoline to treat infections caused by the brain-eating amoeba Balamuthia mandrillaris

Laurie, M. T.; White, C. V.; Retallack, H.; Wu, W.; Moser, M. S.; Sakanari, J.; Ang, K.; Wilson, C.; Arkin, M. R.; DeRisi, J. L.

10.1101/331785 — pharmacology and toxicology — Posted on 2018-06-06

2050 Single-cell transcriptomics identifies CD44 as a new marker and regulator of haematopoietic stem cells development

Oatley, M.; Vargel Bolukbasi, O.; Svensson, V.; Shvartsman, M.; Ganter, K.; Zirngibl, K.; Pavlovich, P. V.; Milchevskaya, V.; Foteva, V.; Natarajan, K. N.; Baying, B.; Benes, V.; Patil, K. R.; Teichmann, S. A.; Lancrin, C.

10.1101/338178 — developmental biology — Posted on 2018-06-06

2051 Tristetraprolin/ZFP36 regulates the turnover of autoimmune-associated HLA-DQ mRNAs

Pisapia, L.; Hamilton, R.; D'Agostino, V.; Barba, P.; Strazzullo, M.; Provenzani, A.; Gianfrani, C.; Del Pozzo, G.

10.1101/337907 — molecular biology — Posted on 2018-06-06

2052 Next-Generation Sequencing Could be a Promising Diagnostic Approach for Pathogen Detection: Pathogenic Analysis of Pediatric Bacterial Meningitis by Next-Generation Sequencing Technology Directly from Cerebrospinal Fluid Specimens

Guo, L.; Li, Y.; Liu, L.; Wu, H.; Zhou, J.; Zhang, Y.; Feng, W.; Zhu, L.; Hu, B.; Hu, H.; Chen, T.; Guo, X.; Chen, H.; Yang, Y.-h.; Liu, G.

10.1101/340273 — microbiology — Posted on 2018-06-06

2053 \"Small and many\" is the strategy for robust and efficient information transfer in dendritic spines

Tottori, T. S.; Fujii, M.; Kuroda, S.

10.1101/340414 — biophysics — Posted on 2018-06-06

2054 Proteogenomic view of cancer epigenetics: the impact of DNA methylation on the cancer proteome

Magzoub, M. M.; Prunello, M.; Brennan, K.; Gevaert, O.

10.1101/340760 — bioinformatics — Posted on 2018-06-06

2055 3D Reconstruction of Bird Flight Using a Single Video Camera

Srinivasan, M. V.; Vo, H. D.; Schiffner, I.

10.1101/340232 — animal behavior and cognition — Posted on 2018-06-06

2056 Semi-Analytic Nonparametric Bayesian Inference for Spike-Spike Neuronal Connectivity

Ambrogioni, L.; Ebel, P.; Hinne, M.; Guclu, U.; van Gerven, M.; Maris, E.

10.1101/340489 — neuroscience — Posted on 2018-06-06

2057 Electric field dynamics in the brain during multi-electrode transcranial electric stimulation

Alekseichuk, I.; Falchier, A. Y.; Linn, G.; Xu, T.; Milham, M. P.; Schroeder, C. E.; Opitz, A.

10.1101/340224 — neuroscience — Posted on 2018-06-06

2058 Blocking the alternative sigma factor RpoN reduces virulence of Pseudomonas aeruginosa isolated from cystic fibrosis patients and increases antibiotic sensitivity in a laboratory strain

Lloyd, M. G.; Vossler, J. L.; Nomura, C. T.; Moffat, J. F.

10.1101/340307 — microbiology — Posted on 2018-06-06

2059 Early split between African and European populations of Drosophila melanogaster

Kapopoulou, A.; Kapun, M.; Pavlidis, P.; Pieper, B.; Wilches, R.; Stephan, W.; Laurent, S.

10.1101/340422 — evolutionary biology — Posted on 2018-06-06

2060 A conformational change in the N terminus of SLC38A9 signals mTORC1 activation

Ma, J.; Lei, H.-T.; Gonen, T.

10.1101/339937 — biophysics — Posted on 2018-06-06

2061 RNA tertiary structure energetics predicted by an ensemble model of the RNA double helix

Yesselman, J. D.; Denny, S. K.; Bisaria, N.; Herschlag, D.; Greenleaf, W. J.; Das, R.

10.1101/341107 — biophysics — Posted on 2018-06-06

2062 Chromatin interactions and expression quantitative trait loci reveal genetic drivers of multimorbidities

Fadason, T.; Schierding, W.; Lumley, T.; O'Sullivan, J.

10.1101/340216 — bioinformatics — Posted on 2018-06-06

2063 Pediatric Cancer Variant Pathogenicity Information Exchange (PeCanPIE): A Cloud-based Platform for Curating and Classifying Germline Variants

Edmonson, M. N.; Patel, A. N.; Hedges, D. J.; Wang, Z.; Rampersaud, E.; Kesserwan, C. A.; Zhou, X.; Liu, Y.; Newman, S.; Rusch, M. C.; McLeod, C. L.; Wilkinson, M. R.; Rice, S. V.; Becksfort, J. B.; Nichols, K. E.; Robison, L. L.; Downing, J. R.; Zhang, J.

10.1101/340901 — bioinformatics — Posted on 2018-06-06

2064 Comparative genomics and phylogeny of sequenced IncHI plasmids

Alvarez, S.

10.1101/334409 — microbiology — Posted on 2018-06-06

2065 Biochemical, molecular and antibiotic resistance profile of multi-potential toluene metabolizing bacteria isolated from tannery effluents

Muccee, F.; Ejaz, S.

10.1101/340240 — microbiology — Posted on 2018-06-06

2066 The probiotic effectiveness in experimental colitis is correlated with gut microbiome and host genetic features

Suwal, S.; Wu, Q.; Liu, W.; Liu, Q.; Sun, H.; Liang, M.; Gao, J.; Zhang, B.; Kou, Y.; Liu, Z.; Wei, Y.; Wang, Y.; Zheng, K.-Y.

10.1101/340331 — microbiology — Posted on 2018-06-06

2067 The fungal-specific Hda2 and Hda3 proteins regulate morphological switches in the human fungal pathogen Candida albicans.

Buscaino, A.; Peterson, M.; Price, R. J.; Gourlay, S.; May, A.; Tullet, J.

10.1101/340364 — microbiology — Posted on 2018-06-06

2068 Assessing intra-lab precision and inter-lab repeatability of outgrowth assays of HIV-1 latent reservoir size

Rosenbloom, D. I. S.; Bacchetti, P.; Stone, M.; Deng, X.; Bosch, R. J.; Richman, D. D.; Siliciano, J. D.; Mellors, J. W.; Deeks, S. G.; Ptak, R. G.; Hoh, R.; Keating, S. M.; Dimapasoc, M.; Massanella, M.; Lai, J.; Sobolewski, M. D.; Kulpa, D. A.; Busch, M. P.; Reservoir Assay Validation and Evaluation Network (RAVEN) Study Group,

10.1101/329672 — microbiology — Posted on 2018-06-06

2069 Whole genome sequencing for predicting clarithromycin resistance in Mycobacterium abscessus

Lipworth, S. I. W.; Hough, N.; Leach, L.; Morgan, M.; Jeffrey, K.; Andersson, M.; Robinson, E.; Smith, G.; Crook, D.; Peto, T.; Walker, T.

10.1101/251918 — microbiology — Posted on 2018-06-06

2070 Locus Coeruleus tracking of prediction errors optimises cognitive flexibility: an Active Inference model.

Sales, A. C.; Friston, K. J.; Jones, M. W.; Pickering, A. E.; Moran, R. J.

10.1101/340620 — neuroscience — Posted on 2018-06-06

2071 Published estimates of group differences in multisensory integration are inflated

Magnotti, J.; Beauchamp, M.

10.1101/331702 — neuroscience — Posted on 2018-06-06

2072 Cortical reliability amid noise and chaos

Nolte, M.; Reimann, M. W.; King, J. G.; Markram, H.; Muller, E. B.

10.1101/304121 — neuroscience — Posted on 2018-06-06

2073 Diurnal Chorusing in Nine Species of North American Frogs

McCallum, M. L.; McCallum, J. L.

10.1101/336149 — ecology — Posted on 2018-06-06

2074 Structural Basis of Tubulin Recruitment and Assembly by Tumor Overexpressed Gene (TOG) domain array Microtubule Polymerases

Nithiananatham, S.; Cook, B.; Chang, F.; Al-Bassam, J.

10.1101/340026 — biochemistry — Posted on 2018-06-06

2075 Domain Insertion Permissibility is a Measure of Engineerable Allostery in Ion Channels

Coyote-Maestas, W.; He, Y.; Myers, C. L.; Schmidt, D.

10.1101/334672 — biochemistry — Posted on 2018-06-06

2076 Super-Resolution Tracking of Mitochondrial Dynamics with An Iridium(III) Luminophore

Chen, Q.; Jin, C.; Shao, X.; Guan, R.; Tian, Z.; Wang, C.; Liu, F.; Ling, P.; Guan, J.-L.; Ji, L.; Wang, F.; Chao, H.; Diao, J.

10.1101/312371 — biophysics — Posted on 2018-06-06

2077 A graph-based algorithm for RNA-seq data normalization

Tran, D.-T.; Bhaskara, A.; Might, M.; Balagurunathan, K.

10.1101/321471 — bioinformatics — Posted on 2018-06-06

2078 Activation of RIG-I-mediated antiviral signaling triggers autophagy through the MAVS-TRAF6-Beclin-1 signaling axis

Inn, K.-S.; Lee, N.-R.; Ban, J.; Lee, N.-J.; Yi, C.-M.; Choi, J.; Kim, H.; Lee, J.-K.; Seong, J.; Cho, N.-H.; Jung, J. U.

10.1101/340323 — immunology — Posted on 2018-06-06

2079 A revised understanding of Tribolium morphogenesis further reconciles short and long germ development

Benton, M. A.

10.1101/232751 — developmental biology — Posted on 2018-06-06

2080 KrakenHLL: Confident and fast metagenomics classification using unique k-mer counts

Breitwieser, F. P.; Salzberg, S. L.

10.1101/262956 — bioinformatics — Posted on 2018-06-06

2081 Toward fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics

Sun, C.; Medvedev, P.

10.1101/239871 — bioinformatics — Posted on 2018-06-06

2082 Generative adversarial networks for reconstructing natural images from brain activity

Seeliger, K.; Güclü, U.; Ambrogioni, L.; Güclütürk, Y.; van Gerven, M. A. J.

10.1101/226688 — neuroscience — Posted on 2018-06-06

2083 Neural engagement with online educational videos predicts learning performance for individual students

Cohen, S. S.; Madsen, J.; Touchan, G.; Robles, D.; Lima, S. F. A.; Henin, S.; Parra, L. C.

10.1101/253260 — neuroscience — Posted on 2018-06-06

2084 Transcription-dependent spreading of canonical yeast GATA factor across the body of highly expressed genes

Ronsmans, A.; Wery, M.; Gautier, C.; Descrimes, M.; Dubois, E.; Morillon, A.; Georis, I.

10.1101/238550 — genomics — Posted on 2018-06-06

2085 Bases of antisense lncRNA-associated regulation of gene expression in fission yeast

WERY, M.; GAUTIER, C.; DESCRIMES, M.; YODA, M.; MIGEOT, V.; HERMAND, D.; MORILLON, A.

10.1101/220707 — molecular biology — Posted on 2018-06-06

2086 Ligand-Mediated Biofilm Formation via Enhanced Physical Interaction Between a Diguanylate Cyclase and Its Receptor

Giacalone, D.; Smith, T. J.; Collins, A.; Sondermann, H.; Koziol, L. J.; O'Toole, G.

10.1101/212183 — microbiology — Posted on 2018-06-06

2087 Simultaneous CRISPR/Cas9-mediated editing of cassava eIF4E isoforms nCBP-1 and nCBP-2 reduces cassava brown streak disease symptom severity and incidence

Gomez, M. A.; Lin, Z.-J. D.; Moll, T.; Chauhan, R. D.; Renninger, K.; Beyene, G.; Taylor, N. J.; Carrington, J. C.; Staskawicz, B. J.; Bart, R.

10.1101/209874 — plant biology — Posted on 2018-06-06

2088 Beyond Bilingualism: multilingual experience correlates with caudate volume

Hervais-Adelman, A.; Egorova, N.; Golestani, N.

10.1101/209619 — neuroscience — Posted on 2018-06-06

2089 Force dependence of filopodia adhesion: involvement of myosin II and formins

Alieva, N. O.; Efremov, A. K.; Hu, S.; Oh, D.; Chen, Z.; Natarajan, M.; Ong, H. T.; Jegou, A.; Romet-Lemonne, G.; Groves, J. T.; Sheetz, M. P.; Yan, J.; Bershadsky, A. D.

10.1101/195420 — cell biology — Posted on 2018-06-06

2090 Population Genetics Based Phylogenetics Under Stabilizing Selection for an Optimal Amino Acid Sequence: A Nested Modeling Approach

Beaulieu, J.; O'Meara, B.; Zaretzki, R.; Landerer, C.; Chai, J.; Gilchrist, M. A.

10.1101/120238 — evolutionary biology — Posted on 2018-06-06

2091 Analyzing whole genome bisulfite sequencing data from highly divergent genotypes

Wulfridge, P.; Langmead, B.; Feinberg, A. P.; Hansen, K. D.

10.1101/076844 — genomics — Posted on 2018-06-06

2092 Regulated nuclear accumulation of a histone methyltransferase times the onset of heterochromatin formation in C. elegans embryos

Mutlu, B.; Chen, H.-M.; Moresco, J. J.; Orelo, B. D.; Yang, B.; Gaspar, J. M.; Keppler-Ross, S.; Yates, J. R.; Hall, D. H.; Maine, E. M.; Mango, S. E.

10.1101/326231 — developmental biology — Posted on 2018-06-06

2093 Validation of an ultra-fast CNV calling tool for Next Generation Sequencing data using MLPA-verified copy number alterations

Tolhuis, B.; Karten, H.

10.1101/340505 — bioinformatics — Posted on 2018-06-06

2094 Interaction between static visual cues and force-feedback on the perception of mass of virtual objects

Bi, W.; Newport, J.; Xiao, B.

10.1101/337899 — neuroscience — Posted on 2018-06-06

2095 White matter connectivity between occipital and temporal regions involved in face and voice processing in hearing and early deaf individuals.

Benetti, S.; Novello, L.; Maffei, C.; Rabini, G.; Jovicich, J.; Collignon, O.

10.1101/339713 — neuroscience — Posted on 2018-06-06

2096 Human Connectome Project resting state fMRI data organized into 60 fine-scaled retinotopically organized regions in cortical areas V1, V2 and V3

Dawson, D. A.; Yin, Z.; Lam, J.; Shmuel, A.

10.1101/340174 — neuroscience — Posted on 2018-06-06

2097 Longitudinal studies at birth and age 7 reveal strong effects of genetic variation on ancestry-associated DNA methylation patterns in blood cells from ethnically admixed children

McKennan, C.; Naughton, K.; Stanhope, C.; Kattan, M.; O'Connor, G.; Sandel, M.; Visness, C.; Wood, R.; Bacharier, L.; Beigelman, A.; Lovisky-Desir, S.; Togias, A.; Gern, J.; Nicolae, D.; Ober, C.

10.1101/339770 — genomics — Posted on 2018-06-06

2098 Understanding the Hidden Complexity of Latin American Population Isolates

Mooney, J.; Huber, C.; Service, S.; Sul, J. H.; Marsden, C.; Zhang, Z.; Sabatti, C.; Ruiz-Linares, A.; Bedoy, G.; Costa Rica/Colombia Consortium for Genetic Investigation of Bipolar Endophenotypes, ; Freimer, N.; Lohmueller, K. E.

10.1101/340158 — genomics — Posted on 2018-06-06

2099 Genome-wide association study reveals sex-specific genetic architecture of facial attractiveness

Hu, B.; Shen, N.; Li, J. J.; Kang, H.; Hong, J.; Fletcher, J.; Greenberg, J.; Mailick, M. R.; Lu, Q.

10.1101/339226 — genetics — Posted on 2018-06-06

2100 CETP inhibition and ADCY9 genotype: evidence of a qualitative pharmacogenetic interaction in cardiovascular disease?

Holmes, M. V.; Davey Smith, G.

10.1101/336875 — genetics — Posted on 2018-06-06

2101 ER shaping proteins regulate mitochondrial fission, outer membrane permeabilization and apoptosis

Milani, M.; Cohen, G. M.; Varadarajan, S.

10.1101/340448 — cell biology — Posted on 2018-06-06

2102 Whole genome sequencing in multiplex families reveals novel inherited and de novo genetic risk in autism

Ruzzo, E. K.; Perez-Cano, L.; Jung, J.-Y.; Wang, L.-k.; Kashef-Haghighi, D.; Hartl, C.; Hoekstra, J.; Leventhal, O.; Gandal, M. J.; Paskov, K.; Stockham, N.; Polioudakis, D.; Lowe, J. K.; Geschwind, D. H.; Wall, D. P.

10.1101/338855 — genomics — Posted on 2018-06-06

2103 Spatial analysis of the cure rate for tuberculosis in primary health care in the municipality of Rio de Janeiro between 2012 and 2014

Prado Junior, J. C.; Medronho, R. d. A.

10.1101/340752 — epidemiology — Posted on 2018-06-06

2104 The role of two-component system response regulator BceR in antimicrobial resistance, virulence, biofilm formation, and stress response of group B Streptococcus.

YANG, Y.; LUO, M.; ZHOU, H.; Li, C.; Luk, A. W. S.; ZHAO, G.; Fung, K.; Ip, M.

10.1101/340679 — microbiology — Posted on 2018-06-06

2105 Maternal-Fetal Genetic Interactions, Imprinting, and Risk of Placental Abruption

Workalemahu, T.

10.1101/340687 — genomics — Posted on 2018-06-06

2106 Diet-based assortative mating through sexual imprinting

Delaney, E. K.; Hoekstra, H. E.

10.1101/338848 — evolutionary biology — Posted on 2018-06-06

2107 Locus Coeruleus tracking of prediction errors optimises cognitive flexibility: an Active Inference model.

Sales, A. C.; Friston, K. J.; Jones, M. W.; Pickering, A. E.; Moran, R. J.

10.1101/340620 — neuroscience — Posted on 2018-06-06

2108 Bayesian adjustment for trend of colorectal cancer incidence in misclassified registering across Iranian provinces

Shojaee, S.; Hajizadeh, N.; Najafimehr, H.; Busani, L.; Pourhoseingholi, M. A.; Baghestani, A. R.; Nasserinejad, M.; Ashtari, S.; Zali, M. R.

10.1101/340562 — epidemiology — Posted on 2018-06-06

2109 Applying Particle Filtering in Both Aggregated and Age-structured Population Compartmental Models of Pre-vaccination Measles

Li, X.; Doroshenko, A.; Osgood, N. D.

10.1101/340661 — epidemiology — Posted on 2018-06-06

2110 Electromagnetic Field and Temozolomide Increase Differentiation of Human Glioblastoma Cell Line; concise view of mechanism

Ahmadi-Zeidabadi, M.; Eskandary, H.; Akbarnejad, Z.; esmaeeli, M.; Masoumi ardakani, Y.

10.1101/340596 — cancer biology — Posted on 2018-06-06

2111 Identifying miRNA-mRNA regulatory relationships in breast cancer with invariant causal prediction

Pham, V. V. H.; Zhang, J.; Liu, L.; Truong, B. M. T.; Xu, T.; Nguyen, T. T.; Li, J.; Le, T. D.

10.1101/340638 — bioinformatics — Posted on 2018-06-06

2112 Evaluating reproducibility of AI algorithms in digital pathology with DAPPER

Bizzego, A.; Bussola, N.; Chierici, M.; Cristoforetti, M.; Francescatto, M.; Maggio, V.; Jurman, G.; Furlanello, C.

10.1101/340646 — bioinformatics — Posted on 2018-06-06

2113 Bayesian Classification of Microbial Communities Based on 16S rRNA Metagenomic Data

Bahadorinejad, A.; Ivanov, I.; Lampe, J.; Hullar, M.; Chapkin, R.; Braga-Neto, U.

10.1101/340653 — bioinformatics — Posted on 2018-06-06

2114 Identification of Common Adulterants in Walnut Beverage Based on Plant DNA Barcode Technology

Han, Q.; Zhang, Y.; Shu, Y.; Chen, J.; Zhang, Y.; Zhou, W.; Zhang, Z.

10.1101/340612 — molecular biology — Posted on 2018-06-06

2115 Individual based genetic analyses support asexual hydrochory dispersal in Zostera noltei

Berkovic, B.; Castilho, N.; Gouveia, L.; Serrao, E. A.; Alberto, F.

10.1101/340554 — ecology — Posted on 2018-06-06

2116 Software-aided workflow for predicting protease-specific cleavage sites using physicochemical properties of the natural and unnatural amino acids in peptide-based drug discovery.

Radchenko, T.; Fontaine, F.; Morettoni, L.; Zamora, I.

10.1101/340604 — bioinformatics — Posted on 2018-06-06

2117 Effects of sublethal concentrations and application concentration of SYP-9625 on Tetranychus cinnabarinus (Boisduval) and its natural enemy, Neoseiulus californicus (McGregor)

Ouyang, J.; Tian, Y.; Jiang, C.; Yang, Q.; Wang, H.; Li, Q.; No,

10.1101/340521 — zoology — Posted on 2018-06-06

2118 Metaproteomics Reveals Potential Mechanisms by which Dietary Resistant Starch Supplementation Attenuates Chronic Kidney Disease Progression in Rats

Zybaylov, B.; Glazko, G.; Rahmatallah, Y.; Andreyev, D.; McElroy, T.; Karaduta, O.; Byrum, S. D.; Orr, L.; Tackett, A. J.; Mackintosh, S. G.; Edmondson, R. D.; Kieffer, D. A.; Martin, R. J.; Adams, S. H.; Vaziri, N. D.; Arthur, J. M.

10.1101/340513 — systems biology — Posted on 2018-06-06

2119 Assessment of self stigma and medication adherence among patients with mental illness who had been treated in Jimma Hospital, Western Ethiopia,2017: community based cross sectional study

golja, e. a.; Kasaye, S. G.; Liyew Agenagnew, badiru Dawud, Birahnie Mekuriaw,

10.1101/340588 — animal behavior and cognition — Posted on 2018-06-06

2120 Association of the GIPR Glu354Gln (rs1800437) polymorphism with hypertension in a brazilian population

Mattos, A. M. d. S.; Costa, S. C.; Outuki, G.; Koga, G. K. C.; Montemor, C. N.; Longo, G. Z.; Watanabe, M. A. E.; Amarante, M. K.; Mazzuco, T. L.

10.1101/340539 — epidemiology — Posted on 2018-06-06

2121 EFFECTORS OF THE SPINDLE ASSEMBLY CHECKPOINT BUT NOT THE MITOTIC EXIT NETWORK ARE CONFINED WITHIN THE NUCLEUS OF SACCHAROMYCES CEREVISIAE

Heasley, L. R.; DeLuca, J. G.; Markus, S. M.

10.1101/340091 — cell biology — Posted on 2018-06-06

2122 Regulation of EGFR endocytosis by CBL during mitosis

Wee, P.; Wang, Z.

10.1101/340356 — cell biology — Posted on 2018-06-06

2123 Structural Basis of Tubulin Recruitment and Assembly by Tumor Overexpressed Gene (TOG) domain array Microtubule Polymerases

Nithiananatham, S.; Brian, C.; Chang, F.; Al-Bassam, J.

10.1101/340026 — biochemistry — Posted on 2018-06-06

2124 Roles for tubulin recruitment and self-organization by TOG domain arrays in Microtubule plus-end tracking and polymerase

Cook, B.; Chang, F.; Flor-Parra, I.; Al-Bassam, J.

10.1101/340133 — biochemistry — Posted on 2018-06-06

2125 Movement Improves the Quality of Temporal Perception and Decision Making

Wiener, M.; Zhou, W. W.; Joiner, W.

10.1101/338590 — neuroscience — Posted on 2018-06-05

2126 Specialized mechanoreceptor systems in rodent glabrous skin

Walcher, J.; Ojeda-Alonso, J.; Haseleu, J.; Oosthuizen, M.; Rowe, A. H.; Bennett, N. C.; Lewin, G. R.

10.1101/337923 — neuroscience — Posted on 2018-06-05

2127 Monitoring changes in the Gene Ontology and their impact on genomic data analysis

Jacobson, M.; Sedeno-Cortes, A. E.; Pavlidis, P.

10.1101/320861 — bioinformatics — Posted on 2018-06-05

2128 Microtubule plus-tips act as signaling hubs for positioning the cleavage furrow during cytokinesis.

Verma, V.; Maresca, T. J.

10.1101/339119 — cell biology — Posted on 2018-06-05

2129 Functional and Anatomical Specificity in a Higher Olfactory Centre

Frechter, S.; Bates, A. S.; Tootoonian, S.; Dolan, M.-J.; Manton, J. D.; Jamasb, A.; Kohl, J.; Bock, D.; Jefferis, G. S. X. E.

10.1101/336982 — neuroscience — Posted on 2018-06-05

2130 Kaposi’s sarcoma-associated herpesvirus ORF68 is a DNA binding protein required for viral genome cleavage and packaging

Gardner, M. R.; Glaunsinger, B. A.

10.1101/322719 — molecular biology — Posted on 2018-06-05

2131 ER-to-Golgi trafficking of procollagen in the absence of large carriers.

McCaughey, J.; Stevenson, N.; Cross, S.; Stephens, D.

10.1101/339804 — cell biology — Posted on 2018-06-05

2132 Drosophila Mutants that Are Motile but Respond Poorly to All Stimuli Tested: An Intermediate Called \"The Boss\"

Vang, L. L.; Adler, J.

10.1101/066423 — animal behavior and cognition — Posted on 2018-06-05

2133 Aversive conditioning in oddball paradigm modulates multisensory integration, attention and emotional processing

Pavlov, Y. G.; Kotchoubey, B.

10.1101/286492 — neuroscience — Posted on 2018-06-05

2134 Large individual differences in human visual cortex revealed by Bayesian analysis of retinotopic maps

Benson, N. C.; Winawer, J.

10.1101/325597 — neuroscience — Posted on 2018-06-05

2135 Stability Criteria for Complex Microbial Communities

Butler, S.; O'Dwyer, J.

10.1101/293605 — ecology — Posted on 2018-06-05

2136 Gain-of-function Shh mutants activate Smo in cis independent of Ptch1/2 function

Casillas, C.; Roelink, H.

10.1101/172429 — developmental biology — Posted on 2018-06-05

2137 Proteomic Analysis of Rat Serum Revealed the Effects of Chronic Sleep Deprivation on Metabolic, Cardiovascular and Nervous System

Ma, B.; Chen, J.

10.1101/340000 — bioinformatics — Posted on 2018-06-05

2138 Molecular crypsis by pathogenic fungi using human factor H. A numerical model

Lang, S. N.; Germerodt, S.; Glock, C.; Skerka, C.; Zipfel, P.; Schuster, S.

10.1101/250662 — systems biology — Posted on 2018-06-05

2139 Sonic Hedgehog is a member of the Hh/DD-peptidase family that spans the eukaryotic and bacterial domains of life.

Roelink, H.

10.1101/276295 — evolutionary biology — Posted on 2018-06-05

2140 Clusters of fatty acids in the serum triacylglyceride fraction associate with the disorders of type 2 diabetes

Johnston, L.; Liu, Z.; Retnakaran, R.; Zinman, B.; Giacca, A.; Harris, S. B.; Bazinet, R. P.; Hanley, A. J.

10.1101/279703 — epidemiology — Posted on 2018-06-05

2141 Deep learning predicts tuberculosis drug resistance status from genome sequencing data

Chen, M. L.; Doddi, A.; Royer, J.; Freschi, L.; Schito, M.; Ezewudo, M.; Kohane, I. S.; Beam, A.; Farhat, M.

10.1101/275628 — bioinformatics — Posted on 2018-06-05

2142 We need to talk about reliability: Making better use of test retest studies for study design and interpretation

Matheson, G. J.

10.1101/274894 — neuroscience — Posted on 2018-06-05

2143 Meiosis-specific prophase-like pathway controls cleavage-independent release of cohesin by Wapl

Challa, K.; Shinohara, M.; Klein, F.; Gasser, S. M.; Shinohara, A.

10.1101/250589 — cell biology — Posted on 2018-06-05

2144 Proper chromosome alignment depends on BRCA2 phosphorylation by PLK1

Ehlen, A.; Martin, C.; Julien, M.; Miron, S.; Theillet, F. X.; Boucherit, V.; Duchambon, P.; El Marjou, A.; Zinn Justin, S.; Carreira, A.

10.1101/265934 — cell biology — Posted on 2018-06-05

2145 Sensory and decisional components of endogenous attention are dissociable.

Banerjee, S.; Grover, S.; Ganesh, S.; Sridharan, D.

10.1101/231613 — neuroscience — Posted on 2018-06-05

2146 Probabilistic fine-mapping of transcriptome-wide association studies

Mancuso, N.; Kichaev, G.; Shi, H.; Freund, M.; Gusev, A.; Pasaniuc, B.

10.1101/236869 — genetics — Posted on 2018-06-05

2147 Linking the chemistry and reactivity of dissolved organic matter from glaciers and rock glaciers

Fegel, T.; Boot, C.; Hall, E.

10.1101/115808 — ecology — Posted on 2018-06-05

2148 A large-scale population study of early life factors influencing left-handedness

de Kovel, C. G. F.; Carrion-Castillo, A.; Francks, C.

10.1101/305425 — developmental biology — Posted on 2018-06-05

2149 A modular transcriptional signature identifies phenotypic heterogeneity of human tuberculosis infection

Singhania, A.; Verma, R.; Graham, C. M.; Lee, J.; Tran, T.; Richarsdon, M.; Lecine, P.; Leissner, P.; Berry, M. P. R.; Wilkinson, R. J.; Kaiser, K.; Rodrigue, M.; Woltmann, G.; Haldar, P.; O'Garra, A.

10.1101/216879 — immunology — Posted on 2018-06-05

2150 Transfer RNA genes experience exceptionally elevated mutation rates

Thornlow, B.; Hough, J.; Roger, J.; Gong, H.; Lowe, T.; Corbett-Detig, R.

10.1101/229906 — bioinformatics — Posted on 2018-06-05

2151 Structural basis for sigma-1 receptor ligand recognition

Schmidt, H. R.; Betz, R. M.; Dror, R. O.; Kruse, A. C.

10.1101/333765 — pharmacology and toxicology — Posted on 2018-06-05

2152 Explorations of the polygenic genetic architecture of flowering time in the worldwide Arabidopsis thaliana population

Zan, Y.; Carlborg, O.

10.1101/206706 — genetics — Posted on 2018-06-05

2153 Deep Neural Networks In Computational Neuroscience

Kietzmann, T. C.; McClure, P.; Kriegeskorte, N.

10.1101/133504 — neuroscience — Posted on 2018-06-05

2154 The Generation and Propagation of the Human Alpha Rhythm

Halgren, M.; Ulbert, I.; Bastuji, H.; Fabo, D.; Eross, L.; Rey, M.; Devinsky, O.; Doyle, W. K.; Mak-McCully, R.; Halgren, E.; Wittner, L.; Chauvel, P.; Heit, G.; Eskandar, E.; Mandell, A.; Cash, S. S.

10.1101/202564 — neuroscience — Posted on 2018-06-05

2155 Genome-wide discovery of epistatic loci affecting antibiotic resistance using evolutionary couplings

Schubert, B.; Maddamsetti, R.; Nyman, J.; Farhat, M. R.; Marks, D. S.

10.1101/325993 — genomics — Posted on 2018-06-05

2156 Actomyosin dynamics, Bmp and Notch signaling pathways drive apical extrusion of proepicardial cells

Andres-Delgado, L.; Ernst, A.; Galardi-Castilla, M.; Bazaga, D.; Peralta Lopez, M.; Munch, J.; Gonzalez-Rosa, J. M.; Tessadori, F.; Bakkers, J.; De La Pompa Minguez, J. L.; Vermot, J.; Mercader, N.

10.1101/332593 — developmental biology — Posted on 2018-06-05

2157 ZAG-1/ZEB prevents the expression of repressors and protects neuronal cell fate in Caenorhabditis elegans

Zheng, C.; Jin, F. Q.; Trippe, B. L.; Wu, J.; Chalfie, M.

10.1101/320978 — developmental biology — Posted on 2018-06-05

2158 Privacy-preserving generative deep neural networks support clinical data sharing

Beaulieu-Jones, B. K.; Wu, Z. S.; Williams, C.; Lee, R.; Bhavnani, S. P.; Byrd, J. B.; Greene, C. S.

10.1101/159756 — bioinformatics — Posted on 2018-06-05

2159 LCA robustly reveals subtle diversity in large-scale single-cell RNA-seq data

Cheng, C.; Easton, J.; Rosencrance, C.; Li, Y.; Ju, B.; Williams, J.; Mulder, H. L.; Chen, W.; Chen, X.

10.1101/305581 — bioinformatics — Posted on 2018-06-05

2160 Fold-change detection of NF-κB at target genes with different transcript outputs

Wong, V. C.; Ramji, R.; Gaudet, S.; Miller-Jensen, K.

10.1101/339697 — systems biology — Posted on 2018-06-05

2161 Quantitative agent-based modeling reveals mechanical stress response of growing tumor spheroids is predictable over various growth conditions and cell lines

Van Liedekerke, P.; Neitsch, J.; Johann, T.; Alessandri, K.; Nassoy, P.; Drasdo, D.

10.1101/122614 — systems biology — Posted on 2018-06-05

2162 Heterologous Expression of Pseudomonas putida Methyl-Accepting Chemotaxis Proteins Yields Escherichia coli Chemotactic to Aromatic Compounds

Roggo, C.; Clerc, E. E.; Hadadi, N.; Carraro, N.; Stocker, R.; van der Meer, J. R.

10.1101/339275 — microbiology — Posted on 2018-06-05

2163 Critical role of post-transcriptional regulation for IFN-γ in tumor-infiltrating T cells

Wolkers, M. C.; Salerno, F.; Guislain, A.; Freen-van Heeren, J. J.; Nicolet, B. P.; Young, H. A.

10.1101/339580 — immunology — Posted on 2018-06-05

2164 Separation and Loss of Centrioles from Primordidal Germ Cells to Mature Oocytes in the Mouse

Schatten, G.; Simerly, C. R.; Manil-Segalen, M.; Castro, C.; Hartnett, C.; Kong, D.; Verlhac, M.-H.; Loncarek, J.

10.1101/339572 — developmental biology — Posted on 2018-06-05

2165 Collagen assembly and turnover imaged with a CRISPR-Cas9 engineered Dendra2 tag

Pickard, A.; Adamson, A.; Lu, Y.; Chang, J.; Garva, R.; Hodson, N.; Kadler, K.

10.1101/331496 — cell biology — Posted on 2018-06-05

2166 Oxygen restriction induces a viable but non-culturable population in bacteria

Kvich, L. A.; Fritz, B. G.; Crone, S. G.; Kragh, K. N.; Kolpen, M.; Sonderholm, M.; Andersson, M.; Koch, A.; Jensen, P. O.; Bjarnsholt, T.

10.1101/339747 — microbiology — Posted on 2018-06-05

2167 Local and population-level responses of Greater sage-grouse to oil and gas development and climatic variation in Wyoming

Ramey, R. R.; Thorley, J. L.; Ivey, A. S.

10.1101/028274 — ecology — Posted on 2018-06-05

2168 Targeted Molecular Dynamics Simulations Suggest Direct Ligand Competition as a Plausible Efflux Inhibition Mechanism in the Multidrug Resistance Pump AcrB.

Vieira da Silva Junior, L.; Almeida da Silva, P. E.; Machado, K. S.; Dutra, N.; Lybrand, T. P.

10.1101/339242 — bioinformatics — Posted on 2018-06-05

2169 Physical and transcriptional organisation of the bread wheat intracellular immune receptor repertoire

Steuernagel, B.; Witek, K.; Krattinger, S. G.; Ramirez-Gonzalez, R. H.; Schoonbeek, H.-j.; Yu, G.; Baggs, E.; Witek, A.; Yadav, I.; Krasileva, K. V.; Jones, J. D. G.; Uauy, C.; Keller, B.; Ridout, C. J.; The International Wheat Genome Sequencing Consortium, ; Wulff, B.

10.1101/339424 — plant biology — Posted on 2018-06-05

2170 Variation at the TRIM11 locus modifies Progressive Supranuclear Palsy phenotype

Jabbari, E.; John, W.; Tan, M. M.; Maryam, S.; Pittman, A.; Ferrari, R.; Mok, K. Y.; Zhang, D.; Reynolds, R. H.; de Silva, R.; Grimm, M.-J.; Respondek, G.; Muller, U.; Al-Sarraj, S.; Gentleman, S. M.; Lees, A. J.; Warner, T. T.; Hardy, J.; Revesz, T.; PROSPECT-UK consortium, ; Hoglinger, G. U.; Holton, J. L.; Ryten, M.; Morris, H. R.

10.1101/333195 — neuroscience — Posted on 2018-06-05

2171 A retinal circuit generating a dynamic predictive code for orientated features

Johnston, J.; Seibel, S.-H.; Darnet, L. S. A.; Renninger, S.; Orger, M.; Lagnado, L.

10.1101/331504 — neuroscience — Posted on 2018-06-05

2172 Specialized mechanoreceptor systems in rodent glabrous skin

Lewin, G. R.; Walcher, J.; Ojeda-Alonso, J.; Haseleu, J.; Oosthuizen, M.; Rowe, A. H.; Bennett, N. C.

10.1101/337923 — neuroscience — Posted on 2018-06-05

2173 Modeling structure, stability and flexibility of double-stranded RNAs in salt solutions

Jin, L.; Shi, Y.-Z.; Feng, C.-J.; Tan, Y.-L.; Tan, Z.-J.

10.1101/332676 — biophysics — Posted on 2018-06-05

2174 Attenuated beta rebound to proprioceptive afferent feedback in Parkinson’s disease

Vinding, M. C.; Tsitsi, P.; Piitulainen, H.; Waldthaler, J.; Jousmaki, V.; Ingvar, M.; Svenningsson, P.; Lundqvist, D.

10.1101/334565 — neuroscience — Posted on 2018-06-05

2175 Heteromeric GABAA receptor structures in positively-modulated active states

Miller, P.; Masiulis, S.; Malinauskas, T.; Kotecha, A.; Rao, S.; Chavali, S.; De Colibus, L.; Pardon, E.; Hannan, S.; Scott, S.; Sun, Z.; Frenz, B.; Klesse, G.; Li, S.; Diprose, J.; Siebert, A.; Esnouf, R.; DiMaio, F.; Tucker, S.; Smart, T.; Steyaert, J.; Babu, M.; Sansom, M.; Huiskonen, J.; Aricescu, R.

10.1101/338343 — biophysics — Posted on 2018-06-05

2176 Inhibition of thrombocyte activation restores protective immunity to mycobacterial infection

Hortle, E.; Johnson, K. E.; Johansen, M. D.; Nguyen, T.; Shavit, J. A.; Britton, W. J.; Tobin, D. M.; Oehlers, S. H.

10.1101/338111 — immunology — Posted on 2018-06-05

2177 Broad geographic sampling reveals predictable and pervasive seasonal adaptation in Drosophila

Machado, H.; Bergland, A. O.; Taylor, R.; Tilk, S.; Behrman, E.; Dyer, K.; Fabian, D.; Flatt, T.; Gonzalez, J.; Karasov, T.; Kozeretska, I.; Lazzaro, B. P.; Merritt, T.; Pool, J.; O'Brien, K.; Rajpurohit, S.; Roy, P.; Schaeffer, S.; Serga, S.; Schmidt, P.; Petrov, D.

10.1101/337543 — evolutionary biology — Posted on 2018-06-05

2178 Predicting onset, progression, and clinical subtypes of Parkinson disease using machine learning

Faghri, F.; Hashemi, S. H.; Leonard, H.; Scholz, S. W.; Campbell, R. H.; Nalls, M. A.; Singleton, A. B.

10.1101/338913 — neuroscience — Posted on 2018-06-05

2179 Revealing heterogeneity of brain imaging phenotypes in Alzheimer’s disease based on unsupervised clustering of blood marker profiles

Marti-Juan, G.; Sanroma, G.; Piella, G.; The Alzheimer's Disease Neuroimaging Initiative and the Alzheimer's Disease Metabolomics Consortium,

10.1101/339614 — bioinformatics — Posted on 2018-06-05

2180 An Integrative Boosting Approach for Predicting Survival Time With Multiple Genomics Platforms

Wong, K. Y.; Fan, C.; Tanioka, M.; Parker, J. S.; Nobel, A. B.; Zeng, D.; Lin, D.-Y.; Perou, C. M.

10.1101/338145 — bioinformatics — Posted on 2018-06-05

2181 The chemokine receptor CXCR2 contributes to murine adipocyte development

Dyer, D. P.; Boix Nebot, J.; Kelly, C.; Medina-Ruiz, L.; Scheutte, F.; Graham, G. J.

10.1101/339721 — immunology — Posted on 2018-06-05

2182 A long-non-coding RNA, LINC00473, confers the human adipose tissue thermogenic phenotype through enhanced cAMP responsiveness.

Tran, K.-V.; Nandrup-Bus, C.; DeSouza, T.; Soares, R.; Jespersen, N. Z.; Min, S. Y.; Rojas-Rodriguez, R.; Willenbrock, H.; Juhlin, T.; Severinsen, M. C. K.; Malka, K.; Pedersen, B. K.; Fitzgibbons, T.; Scheele, C.; Corvera, S.; Nielsen, S.

10.1101/339192 — cell biology — Posted on 2018-06-05

2183 Sampling native-like structures of RNA-protein complexes through Rosetta folding and docking

Kappel, K.; Das, R.

10.1101/339374 — biophysics — Posted on 2018-06-05

2184 Dynamics and spatial genomics of the nascent transcriptome in single mESCs by intron seqFISH

Shah, S.; Takei, Y.; Zhou, W.; Lubeck, E.; Yun, J.; Koulena, N.; Liaw, E. J.; Amin, M.; Cai, L.

10.1101/339234 — systems biology — Posted on 2018-06-05

2185 AQ-seq: Accurate quantification of microRNAs and their variants

Kim, H.; Kim, J.; Kim, K.; Chang, H.; You, K.; Kim, V. N.

10.1101/339606 — molecular biology — Posted on 2018-06-05

2186 Genome-scale oscillations in DNA methylation during exit from pluripotency

Rulands, S.; Lee, H. J.; Clark, S. J.; Angermueller, C.; Smallwood, S. A.; Krueger, F.; Mohammed, H.; Dean, W.; Nichols, J.; Rugg-Gunn, P.; Kelsey, G.; Stegle, O.; Simons, B. D.; Reik, W.

10.1101/338822 — genomics — Posted on 2018-06-05

2187 mTOR-dependent phosphorylation controls TFEB nuclear export

Napolitano, G.; Esposito, A.; Choi, H.; Benedetti, V.; Matarese, M.; Di Malta, C.; Monfregola, J.; Medina, D. L.; Lippincott-Schwartz, J.; Ballabio, A.

10.1101/339416 — cell biology — Posted on 2018-06-05

2188 High-resolution sweep metagenomics using ultrafast read mapping and inference

Mäklin, T.; Kallonen, T.; David, S.; Pascoe, B.; Meric, G.; Aanensen, D. M.; Feil, E. J.; Sheppard, S. K.; Corander, J.; Honkela, A.

10.1101/332544 — bioinformatics — Posted on 2018-06-05

2189 Yeast PAF1 complex restricts the accumulation of RNA polymerase III and counters the replication stress on the transcribed genes

Bhalla, P.; Vernekar, D. V.; Shukla, A.; Gilquin, B.; Coute, Y.; Bhargava, P.

10.1101/339499 — molecular biology — Posted on 2018-06-05

2190 Computational algorithms and neural circuitry for compressed sensing in the mammalian main olfactory bulb

Kepple, D.; Cazakoff, B. N.; Demmer, H. S.; Eckmeier, D.; Shea, S. D.; Koulakov, A. A.

10.1101/339689 — neuroscience — Posted on 2018-06-05

2191 Effects of working memory training on reference memory, reversal learning and synaptic plasticity in middle-aged male mice

Ioakeimidis, V.; Konstantoudaki, X.; Sidiropoulou, K.

10.1101/339432 — neuroscience — Posted on 2018-06-05

2192 Pathological Pattern Formation in Absence Epilepsy: A Theoretical Framework to Unify Global and Focal Aspects

Yang, D.-P.; Robinson, P. A.

10.1101/339366 — neuroscience — Posted on 2018-06-05

2193 Simultaneous representation of sensory and mnemonic information in human visual cortex

Rademaker, R. L.; Chunharas, C.; Serences, J. T.

10.1101/339200 — neuroscience — Posted on 2018-06-05

2194 A command-like descending neuron that coordinately activates backward and inhibits forward locomotion

Doe, C. Q.; Zarin, A. A.; Carreira-Rosario, A.; Clark, M. Q.; Manning, L.; Cardona, A.; Fetter, R. D.

10.1101/339556 — neuroscience — Posted on 2018-06-05

2195 Gamma-Band Correlations in Primary Visual Cortex

Liu, X. M.; Sanz-Leon, P.; Robinson, P. A.

10.1101/339184 — neuroscience — Posted on 2018-06-05

2196 Stiffness as a control factor for object manipulation

Kennedy, S. D.; Schwartz, A. B.

10.1101/339101 — neuroscience — Posted on 2018-06-05

2197 CaImAn: An open source tool for scalable Calcium Imaging data Analysis

Giovannucci, A.; Friedrich, J.; Gunn, P.; Kalfon, J.; Koay, S. A.; Taxidis, J.; Najafi, F.; Gauthier, J. L.; Zhou, P.; Tank, D. W.; Chklovskii, D. B.; Pnevmatikakis, E. A.

10.1101/339564 — neuroscience — Posted on 2018-06-05

2198 Amylase copy number analysis in several mammalian lineages reveals convergent adaptive bursts shaped by diet

Pajic, P.; Pavlidis, P.; Dean, K.; Neznanova, L.; Daugherity, E.; Romano, R.-A.; Garneau, D.; Globig, A.; Ruhl, S.; Gokcumen, O.

10.1101/339457 — evolutionary biology — Posted on 2018-06-05

2199 A cumulative inertia phenomenon explains anomalous long-distance transport in eukaryotic cells

Fedotov, S.; Korabel, N.; Waigh, T.; Han, D.; Allan, V.

10.1101/339390 — biophysics — Posted on 2018-06-05

2200 Exhaustive exploration of the conformational landscape of small cyclic peptides using a robotics approach

Jusot, M.; Stratmann, D.; Vaisset, M.; Chomilier, J.; Cortes, J.

10.1101/338483 — bioinformatics — Posted on 2018-06-05

2201 GenotypeTensors: Efficient Neural Network Genotype Callers

Cohen, J. B.; Simi, M.; Campagne, F.

10.1101/338780 — bioinformatics — Posted on 2018-06-05

2202 Whole-brain imaging and characterization of Drosophila brains based on one-, two-, and three-photon excitations

Chu, S.-W.; Lin, Y.-Y.; Chiang, A.-S.; Hsu, K.-J.

10.1101/339531 — neuroscience — Posted on 2018-06-05

2203 Tandem repeats drive variation of intrinsically disordered regions in budding yeast

Babokhov, M.; Reinfeld, B. I.; Hackbarth, K.; Bentov, Y.; Fuchs, S. M.

10.1101/339663 — molecular biology — Posted on 2018-06-05

2204 Structural insights on TRPV5 gating by endogenous modulators

Hughes, T. E. T.; Pumroy, R. A.; Fluck, E. C.; Huynh, K. W.; Samanta, A.; Molugu, S.; Zhou, Z. H.; Moiseenkova-Bell, V. Y.

10.1101/338798 — biophysics — Posted on 2018-06-05

2205 Movement Improves the Quality of Temporal Perception and Decision Making

Wiener, M.; Zhou, W. W.; Joiner, W.

10.1101/338590 — neuroscience — Posted on 2018-06-05

2206 Connectivity analyses of bioenergetic changes in schizophrenia: Identification of novel treatments

Sullivan, C. R.; Mielnik, C.; O'Donovan, S. M.; Funk, A.; Bentea, E.; Carey, E.; Wen, Z.; Haroutunian, V.; Katsel, P.; Ramsey, A. J.; Meller, J.; McCullumsmith, R.

10.1101/338392 — neuroscience — Posted on 2018-06-05

2207 Phosphorylation of a Toxoplasma gondii tyrosine transporter by calcium-dependent kinase 3 is important for parasite fitness

Wallbank, B. A.; Dominicus, C. S.; Broncel, M.; Legrave, N.; MacRae, J. I.; Staines, H. M.; Treeck, M.

10.1101/339671 — microbiology — Posted on 2018-06-05

2208 Detection of task-relevant and task-irrelevant motion sequences: application to motor adaptation in goal-directed and whole-body movements

Furuki, D.; Takiyama, K.

10.1101/339648 — neuroscience — Posted on 2018-06-05

2209 How adaptive plasticity evolves when selected against

Rago, A.; Kouvaris, K.; Uller, T.; Watson, R. A.

10.1101/339622 — evolutionary biology — Posted on 2018-06-05

2210 Weakly supervised classification of rare aortic valve malformations using unlabeled cardiac MRI sequences

Fries, J. A.; Varma, P.; Chen, V.; Xiao, K.; Tejeda, H.; Priyanka, S.; Dunnmon, J.; Chubb, H.; Maskatia, S.; Fiterau, M.; Delp, S.; Ashley, E.; Re, C.; Priest, J.

10.1101/339630 — bioinformatics — Posted on 2018-06-05

2211 Revealing heterogeneity of brain imaging phenotypes in Alzheimer’s disease based on unsupervised clustering of blood marker profiles

Marti-Juan, G.; Sanroma, G.; Piella, G.; The Alzheimers Disease Neuroimaging Initiative and the Alzheimers Disease Metabolomics,

10.1101/339614 — bioinformatics — Posted on 2018-06-05

2212 Migration through a small pore disrupts inactive chromatin organisation in neutrophil-like cells

Jacobson, E. C.; Perry, J. K.; Long, D. S.; Olins, A. L.; Olins, D. E.; Wright, B. E.; Vickers, M. H.; O'Sullivan, J. M.

10.1101/339085 — genomics — Posted on 2018-06-05

2213 TGFβ1-induced cell motility is mediated through Cten in colorectal cancer

Asiri, A.; Raposo, T. P.; Alfahed, A.; Ilyas, M.

10.1101/339341 — cancer biology — Posted on 2018-06-05

2214 Connecting the dots between mechanosensitive channel abundance, osmotic shock, and survival at single-cell resolution

Chure, G. D.; Lee, H. J.; Phillips, R.

10.1101/339259 — biophysics — Posted on 2018-06-05

2215 Trio deep-sequencing does not reveal unexpected mutations in Cas9-edited monkeys

Luo, X.; He, Y.; Zhang, C.; He, X.; Yan, L.; Li, M.; Hu, T.; Hu, Y.; Jiang, J.; Meng, X.; Ji, W.; Zhao, X.; Zheng, P.; Xu, S.; Su, B.

10.1101/339143 — bioengineering — Posted on 2018-06-05

2216 Improved performance of microbial fuel cells through addition of trehalose lipids

Cheng, P.; Shan, R.; Yuan, H.; Dong, G.; Deng, L.; Chen, Y.

10.1101/339267 — biochemistry — Posted on 2018-06-05

2217 GZMA and RASGRP1 are novel tumor suppressors that counter dissemination of Theileria annulata-transformed macrophages

Rchiad, Z.; Haidar, M.; Ansari, H. R.; Tajeri, S.; Ben Rached, F.; Langsley, G.; Pain, A.

10.1101/338160 — molecular biology — Posted on 2018-06-04

2218 Sense-antisense gene overlap causes evolutionary retention of the few introns in Giardia genome and the implications

Xue, M.; Chen, B.; Ye, Q.; Shao, J.; Lyu, Z.; Wen, J.

10.1101/333310 — genomics — Posted on 2018-06-04

2219 R2C2: Improving nanopore read accuracy enables the sequencing of highly-multiplexed full-length single-cell cDNA

Volden, R.; Palmer, T.; Byrne, A.; Cole, C.; Schmitz, R. J.; Green, R. E.; Vollmers, C.

10.1101/338020 — genomics — Posted on 2018-06-04

2220 Unravelling the response of the actin cortex to electric pulses in vesicles

Perrier, D.; Vahid, A.; Kathavi, V.; Stam, L.; Rems, L.; Mulla, Y.; Koenderink, G.; Boukany, P.; Kreutzer, M.; Boukany, P.

10.1101/338566 — biophysics — Posted on 2018-06-04

2221 Practical model selection for prospective virtual screening

Liu, S.; Alnammi, M.; Ericksen, S. S.; Voter, A. F.; Keck, J. L.; Hoffmann, F. M.; Wildman, S. A.; Gitter, A.

10.1101/337956 — biochemistry — Posted on 2018-06-04

2222 A systems biology approach to explore the impact of maple tree dormancy release on sap variation and maple syrup quality

Nguyen, G. Q.; Martin, N.; Jain, M.; Lagace, L.; Landry, C.; Filteau, M.

10.1101/329367 — plant biology — Posted on 2018-06-04

2223 Exposure to unpredictable trips and slips while walking can improve balance recovery responses with minimum predictive gait alterations

Okubo, Y.; Brodie, M. A.; Sturnieks, D. L.; Hicks, C.; Carter, H.; Toson, B.; Lord, S. R.

10.1101/333989 — physiology — Posted on 2018-06-04

2224 Improved Accuracy of Diffusion MRI Tractography Using Topology-Informed Pruning (TIP)

Yeh, F.-C.; Panesar, S.; Barrios, J.; Fernandes, D.; Abhinav, K.; Meola, A.; Fernandez-Miranda, J. C.

10.1101/338624 — neuroscience — Posted on 2018-06-04

2225 A geometric attractor mechanism for self-organization of entorhinal grid modules

Kang, L.; Balasubramanian, V.

10.1101/338087 — neuroscience — Posted on 2018-06-04

2226 Faces and voices in the brain: a modality-general person-identity representation in superior temporal sulcus

Tsantani, M.; Kriegeskorte, N.; McGettigan, C.; Garrido, L.

10.1101/338475 — neuroscience — Posted on 2018-06-04

2227 Predicting onset, progression, and clinical subtypes of Parkinson disease using machine learning

Faghri, F.; Hashemi, S. H.; Leonard, H.; Scholz, S. W.; Campbell, R. H.; Nalls, M. A.; Singleton, A. B.

10.1101/338913 — neuroscience — Posted on 2018-06-04

2228 The non-transcranial TMS-evoked potential is an inherent source of ambiguity in TMS-EEG studies

Conde, V.; Tomasevic, L.; Akopian, I.; Stanek, K.; Saturnino, G. B.; Thielscher, A.; Bergmann, T. O.; Siebner, H. R.

10.1101/337782 — neuroscience — Posted on 2018-06-04

2229 Reduced transfer of visuomotor adaptation is associated with aberrant sense of agency in Schizophrenia

Bansal, S.; Murthy, K. G.; Fitzgerald, J.; Schwartz, B. L.; Joiner, W. M.

10.1101/338509 — neuroscience — Posted on 2018-06-04

2230 The genetic basis of mutation rate variation in yeast

Gou, L.; Bloom, J. S.; Kruglyak, L.

10.1101/338723 — genetics — Posted on 2018-06-04

2231 No support for the sexy-sperm hypothesis in the seed beetle: sons of monandrous females fare better in post-copulatory competition

Hook, K. A.

10.1101/336883 — evolutionary biology — Posted on 2018-06-04

2232 RNA structure prediction including pseudoknots through direct enumeration of states

Kimchi, O.; Cragnolini, T.; Brenner, M. P.; Colwell, L. J.

10.1101/338921 — biophysics — Posted on 2018-06-04

2233 In a temporally segmented experience hippocampal neurons represent temporally drifting context but not discrete segments.

Bladon, J. H.; Sheehan, D. J.; De Freitas, C. S.; Howard, M.

10.1101/338962 — animal behavior and cognition — Posted on 2018-06-04

2234 Analysis of cell size homeostasis at the single-cell and population level

Thomas, P.

10.1101/338632 — systems biology — Posted on 2018-06-04

2235 Current and future goals are represented in opposite patterns in object-selective cortex

van Loon, A. M.; Olivers, C. N. L.; Fahrenfort, J. J.

10.1101/337964 — neuroscience — Posted on 2018-06-04

2236 MTSS1/Src family kinase Dysregulation Underlies Multiple Inherited Ataxias

Brown, A. S.; Pratap, M.; Altindag, B.; Chopra, R.; Perkins, E.; Paul, S.; Scoles, D. R.; Tarapore, E.; Jackson, M.; Shakkottai, V. G.; Otis, T. S.; Pulst, S. M.; Atwood, S. X.; Oro, A. E.

10.1101/338046 — neuroscience — Posted on 2018-06-04

2237 Multiplex droplet assay reveals coinciding inoculum effect and phenotypic heterogeneity during beta-lactam treatment of bacteria

Scheler, O.; Debski, P. R.; Horka, M.; Ruszczak, A.; Pacocha, N.; Postek, W.; Makuch, K.; Garstecki, P.

10.1101/328393 — microbiology — Posted on 2018-06-04

2238 Identification and quantification of Lyme pathogen strains by deep sequencing of outer surface protein C (ospC) amplicons

Di, L.; Wan, Z.; Akther, S.; Ying, C.; Larracuente, A.; Li, L.; Di, C.; Nunez, R.; Cucura, D. M.; Goddard, N. L.; Krampis, K.; Qiu, W.

10.1101/332072 — microbiology — Posted on 2018-06-04

2239 The damage signal IL-33 promotes a focal protective myeloid cell response to Toxoplasma gondii in the brain

Still, K. M.; Batista, S. J.; Thompson, J. A.; Hayes, N. W.; O'Brien, C. A.; Harris, T. H.

10.1101/338400 — immunology — Posted on 2018-06-04

2240 High genetic diversity and presence of genetic structure characterise the Corso-Sardinian endemics Ruta corsica and Ruta lamarmorae (Rutaceae)

Meloni, M.; Dettori, C. A.; Reid, A.; Bacchetta, G.; Hugot, L.; Conti, E.

10.1101/337931 — genetics — Posted on 2018-06-04

2241 The Evolution of Bequeathal in Stable Habitats

Clarke, P. M. R.; McElreath, M. B.; Barrett, B. J.; Mabry, K. E.; McElreath, R. L.

10.1101/336222 — evolutionary biology — Posted on 2018-06-04

2242 Vascular bundle sheath and mesophyll regulation of leaf water balance in response to chitin

Attia, Z.; Dalal, A.; Moshelion, M.

10.1101/337709 — plant biology — Posted on 2018-06-04

2243 What can computational modeling tell us about the diversity of odor-capture structures in the Pancrustacea?

Waldrop, L. D.; He, Y.; Khatri, S.

10.1101/337808 — physiology — Posted on 2018-06-04

2244 Timing of readiness potentials reflect a decision-making process in the human brain

Lui, K. K.; Nunez, M. D.; Cassidy, J. M.; Vandekerckhove, J.; Cramer, S. C.; Srinivasan, R.

10.1101/338806 — neuroscience — Posted on 2018-06-04

2245 Manifold-tiling Localized Receptive Fields are Optimal in Similarity-preserving Neural Networks

Sengupta, A.; Tepper, M.; Pehlevan, C.; Genkin, A.; Chklovskii, D.

10.1101/338947 — neuroscience — Posted on 2018-06-04

2246 Quantitation of single action potential-evoked Ca2+ signals in CA1 pyramidal neuron presynaptic terminals

Church, E.; Hamid, E.; Alford, S.

10.1101/337816 — neuroscience — Posted on 2018-06-04

2247 Toward an objective diagnostic for detection of Leishmania RNA virus (LRV) in clinical samples from cutaneous leishmaniasis patients.

Parra-Munoz, M.; Aponte, S.; Ovalle-Bracho, C.; Saavedra, C. H.; Echeverry, M. C.

10.1101/338095 — microbiology — Posted on 2018-06-04

2248 Microbiome interaction networks and community structure from lab-reared and field-collected Aedes aegypti, Aedes albopictus, and Culex quinquefasciatus mosquito vectors.

Hegde, S.; Khanipov, K.; Albayrak, L.; Golovko, G.; Pimenova, M.; Saldana, M. A.; Rojas, M. M.; Hornett, E. A.; Motl, G. C.; Fredregill, C. L.; Dennett, J. A.; Debboun, M.; Fofanov, Y.; Hughes, G. L.

10.1101/337311 — microbiology — Posted on 2018-06-04

2249 Genetic insight into zinc and antimicrobial toxicity uncovers a glycerol phosphate modification on streptococcal rhamnose polysaccharides

Edgar, R. J.; van Hensbergen, V. P.; Ruda, A.; Turner, A.; Deng, P.; Le Breton, Y.; El-Sayed, N. M.; Belew, A. T.; McIver, K. S.; McEwan, A. G.; Morris, A. J.; Lambeau, G.; Walker, M. J.; Rush, J. S.; Korotkov, K. V.; Widmalm, G.; van Sorge, N. M.; Korotkova, N.

10.1101/337519 — microbiology — Posted on 2018-06-04

2250 Planktonic Protist Biodiversity and Biogeography in Lakes From Four Brazilian River-Floodplain Systems

Lentendu, G.; Buosi, P. R. B.; Cabral, A. F.; Segovia, B. T.; de Meira, B. R.; Lansac-Toha, F. M.; Velho, L. F. M.; Ritter, C.; Dunthorn, M.

10.1101/337824 — microbiology — Posted on 2018-06-04

2251 Inhibition of thrombocyte activation restores protective immunity to mycobacterial infection

Hortle, E.; Johnson, K. E.; Johansen, M. D.; Nguyen, T.; Shavit, J. A.; Britton, W. J.; Tobin, D. M.; Oehlers, S. H.

10.1101/338111 — immunology — Posted on 2018-06-04

2252 Habitat heterogeneity drives scale-dependent biodiversity loss in a temperate marine ecosystem

Starko, S.; Bailey, L.; Creviston, E.; James, K.; Warren, A.; Neufeld, C. J.

10.1101/337972 — ecology — Posted on 2018-06-04

2253 ARGs-OSP: online searching platform for antibiotic resistance genes distribution in metagenomic database and bacterial whole genome database

Zhang, A. N.; Hou, C.-J.; Li, L.-G.; Zhang, T.

10.1101/337675 — bioinformatics — Posted on 2018-06-04

2254 Efficient inference of single cell expression profiles with overlapping pooling and compressed sensing

Wen, X.; Xu, W.; Sun, X.; Tu, J.; Lu, Z.

10.1101/338319 — bioinformatics — Posted on 2018-06-04

2255 Tripal Developer Toolkit

Condon, B.; Almsaeed, A.; West, J.; Chen, M.; Staton, M.

10.1101/328641 — bioinformatics — Posted on 2018-06-04

2256 Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes

Earl, J. P.; Adappa, N. D.; Krol, J.; Bhat, A. S.; Balashov, S.; Ehrlich, R. L.; Palmer, J. N.; Workman, A. D.; Blasetti, M.; Hammond, J.; Cohen, N. A.; Ehrlich, G. D.; Mell, J. C.

10.1101/338731 — bioinformatics — Posted on 2018-06-04

2257 An Integrative Boosting Approach for Predicting Survival Time With Multiple Genomics Platforms

Wong, K. Y.; Fan, C.; Tanioka, M.; Parker, J. S.; Nobel, A. B.; Zeng, D.; Lin, D.-Y.; Perou, C. M.

10.1101/338145 — bioinformatics — Posted on 2018-06-04

2258 Catalytic Use of a Leader Peptide in the Biosynthesis of 3-Thiaglutamate

van der Donk, W.; Funk, M. A.; Ting, C.

10.1101/338681 — biochemistry — Posted on 2018-06-04

2259 Absolute quantification of translational regulation and burden using combined sequencing approaches

Gorochowski, T. E.; Chelysheva, I.; Eriksen, M.; Nair, P.; Pedersen, S.; Ignatova, Z.

10.1101/338939 — synthetic biology — Posted on 2018-06-04

2260 Molecular and functional heterogeneity of cerebellar granule cell terminals expands temporal coding in molecular layer interneurons.

Dorgans, K.; Demais, V.; Bailly, Y.; Poulain, B.; Isope, P.; Doussau, F.

10.1101/338152 — neuroscience — Posted on 2018-06-04

2261 The effects of habits on motor skill learning

Popp, N. J.; Yokoi, A.; Gribble, P.; Diedrichsen, J.

10.1101/338749 — neuroscience — Posted on 2018-06-04

2262 Proteomics reveals ablation of placental growth factor inhibits the insulin resistance pathways in diabetic mouse retina

Lennikov, M. S.; Lennikov, A.; Tang, S.; Huang, H.

10.1101/338368 — molecular biology — Posted on 2018-06-04

2263 QstR-dependent regulation of natural competence and type VI secretion in Vibrio cholerae

Jaskolska, M.; Stutzmann, S.; Stoudmann, C.; Blokesch, M.

10.1101/337857 — microbiology — Posted on 2018-06-04

2264 Modified protocol for quick and large-scale transformation of Pichia pastoris

Kumar, R.

10.1101/337592 — microbiology — Posted on 2018-06-04

2265 Application of fuzzy inference systems to parameter optimization of a biochemical rule-based model

Hoard, B. R.

10.1101/338384 — immunology — Posted on 2018-06-04

2266 ATRAID, a genetic factor that regulates the clinical action of nitrogen-containing bisphosphonates on bone.

Surface, L.; Park, J.; Kumar, S.; Burrow, D.; Lyu, C.; Li, J.; Song, N.; Yu, Z.; Rajagopal, A.; Bae, Y.; Lee, B.; Mumm, S.; Haller, G.; Gu, C.; Baker, J.; Mohseni, M.; Sum, M.; Huskey, M.; Duan, S.; Bijanki, V.; Civitelli, R.; Gardner, M.; McAndrew, C.; Ricci, W.; Gurnett, C.; Diemer, K.; Carette, J.; Varadarajan, M.; Brummelkamp, T.; Birsoy, K.; Sabatini, D.; O'Shea, E.; Peterson, T.

10.1101/338350 — genomics — Posted on 2018-06-04

2267 H3K9me3 is Required for Transgenerational Inheritance of Small RNAs that Target a Unique Subset of Newly Evolved Genes

Lev, I.; Gingold, H.; Rechavi, O.

10.1101/338582 — genetics — Posted on 2018-06-04

2268 Parallel sexual and parasexual population genomic structure in Trypanosoma cruzi

Schwabl, P.; Imamura, H.; Van den Broeck, F.; Costales, J. A.; Maiguashca, J.; Miles, M. A.; Andersson, B.; Grijalva, M. J.; Llewellyn, M. S.

10.1101/338277 — evolutionary biology — Posted on 2018-06-04

2269 Resource supply drives even spacing of individuals along multiple trait axes in light-limited phytoplankton populations

Fontana, S.; Thomas, M. K.; Reyes, M.; Pomati, F.

10.1101/338129 — ecology — Posted on 2018-06-04

2270 Pancreatic adenocarcinoma human organoids share structural and genetic features with primary tumors

10.1101/338897 — cancer biology — Posted on 2018-06-04

2271 Dimension Reduction and Visualization for Single-copy Alignments via Generalized PCA

Rohrlach, A. B.; Bean, N.; Glonek, G.; Holland, B.; Tobler, R.; Tuke, J.; Cooper, A.

10.1101/338442 — bioinformatics — Posted on 2018-06-04

2272 Small Molecule Inhibition of the Innate Immune Response Increases Transgene Expression

Spivack, K.; Muzzelo, C.; Neely, C.; Vanzelli, J.; Kurt, E.; Elmer, J.

10.1101/338707 — bioengineering — Posted on 2018-06-04

2273 Mechanical and Microstructural Properties of Pediatric Anterior Cruciate Ligaments and Autograft Tendons used for Reconstruction

Schmidt, E. C.; Chin, M.; Aoyama, J. T.; Ganely, T. J.; Shea, K. G.; Hast, M. W.

10.1101/338905 — bioengineering — Posted on 2018-06-04

2274 Movement and conformity interact to establish local behavioural traditions in animal populations

Somveille, M.; Firth, J. A.; Aplin, L. M.; Farine, D. R.; Sheldon, B. C.; Thompson, R. N.

10.1101/338657 — animal behavior and cognition — Posted on 2018-06-04

2275 Visual modelling validates prey detection by means of diurnal active photolocation in a small cryptobenthic fish

Bitton, P.-P.; Yun Christmann, S. A.; Santon, M.; Harant, U. K.; Michiels, N. K.

10.1101/338640 — zoology — Posted on 2018-06-04

2276 Both cell-intrinsic and environmental factors constrain speed and persistence in T cell migration

Wortel, I. M. N.; Niculescu, I.; Kolijn, M.; Gov, N.; de Boer, R. J.; Textor, J.

10.1101/338459 — immunology — Posted on 2018-06-04

2277 Agonistic character displacement of genetically based male color patterns across darters

Moran, R. L.; Fuller, R. C.

10.1101/338715 — evolutionary biology — Posted on 2018-06-04

2278 SEASONAL CHANGES IN BIRD ASSEMBLAGES OF A MAITENAL FOREST IN NORTH PATAGONIA

Cueto, V. R.; Gorosito, C. A.

10.1101/338772 — ecology — Posted on 2018-06-04

2279 A variably imprinted epiallele impacts seed development

Pignatta, D.; Novitzky, K.; Satyaki, P. R. V.; Gehring, M.

10.1101/339036 — plant biology — Posted on 2018-06-04

2280 Repeat elements organize 3D genome structure and mediate transcription in the filamentous fungus Epichloë festucae

Winter, D. J.; Ganley, A.; Young, C.; Liachko, I.; Schardl, C.; Dupont, P.-y.; Berry, D.; Ram, A.; Scott, B.; Cox, M.

10.1101/339010 — genomics — Posted on 2018-06-04

2281 No evidence that mate choice in humans is dependent on the MHC

Cretu Stancu, M.; Kloosterman, W.; Pulit, S. L.

10.1101/339028 — genetics — Posted on 2018-06-04

2282 Sexual maturation and embryonic development in octopus: use of energy and antioxidant defense mechanisms using Octopus mimus as a model.

Olivares, A.; Rodriguez-Fuentes, G.; Mascaro, M.; Sanchez, A.; Ortega, K.; Caamal-Monsreal, C.; Tremblay, N.; Rosas, C.

10.1101/310664 — physiology — Posted on 2018-06-04

2283 Real-time projections of Ebola outbreak size and duration with and without vaccine use in Equateur, Democratic Republic of Congo, as of May 27, 2018

Kelly, J. D.; Worden, L.; Wannier, R.; Hoff, N. A.; Mukadi, P.; Sinai, C.; Ackley, S.; Chen, X.; Gao, D.; Selo, B.; Mossoko, M.; Okitolonda-Wemakoy, E.; Richardson, E. T.; Rutherford, G. W.; Lietman, T. M.; Muyembe-Tamfum, J. J.; Rimoin, A. W.; Porco, T. C.

10.1101/331447 — epidemiology — Posted on 2018-06-04

2284 A machine learning method for subgroup analysis of randomized controlled trials

Buturovic, L.

10.1101/338996 — bioinformatics — Posted on 2018-06-04

2285 Large individual differences in human visual cortex revealed by Bayesian analysis of retinotopic maps

Benson, N. C.; Winawer, J.

10.1101/325597 — neuroscience — Posted on 2018-06-04

2286 High-throughput mapping of meiotic crossover and chromosome mis-segregation events in interspecific hybrid mice

Yin, Y.; Jiang, Y.; Berletch, J. B.; Disteche, C. M.; Noble, W. S.; Steemers, F. J.; Adey, A. C.; Shendure, J. A.

10.1101/338053 — genetics — Posted on 2018-06-04

2287 Chromomycin A2 potently inhibits glucose-stimulated insulin secretion from pancreatic beta cells.

Kalwat, M. A.; Hwang, I. H.; Macho, J.; Grzemska, M.; Yang, J. Z.; McGlynn, K.; MacMillan, J. B.; Cobb, M. H.

10.1101/337113 — cell biology — Posted on 2018-06-04

2288 Pathogenic mutations in NUBPL affect complex I activity and cold tolerance in the yeast model Yarrowia lipolytica

Maclean, A. E.; Kimonis, V. E.; Balk, J.

10.1101/338517 — biochemistry — Posted on 2018-06-04

2289 Variation at the TRIM11 locus modifies Progressive Supranuclear Palsy phenotype

10.1101/333195 — neuroscience — Posted on 2018-06-04

2290 Metagenomics reveals diet-specific specialization in fungus gardens of grass- and dicot-cutter ants

Khadempour, L.; Fan, H.; Keefover-Ring, K.; Carlos, C.; Nagamoto, N. S.; Dam, M. A.; Pupo, M. T.; Currie, C. R.

10.1101/250993 — microbiology — Posted on 2018-06-04

2291 Differential GAP requirement for Cdc42-GTP polarization during proliferation and sexual reproduction

Gallo Castro, D.; Martin, S. G.

10.1101/338186 — cell biology — Posted on 2018-06-04

2292 HiGlass: Web-based Visual Exploration and Analysis of Genome Interaction Maps

Kerpedjiev, P.; Abdennur, N.; Lekschas, F.; McCallum, C.; Dinkla, K.; Strobelt, H.; Luber, J. M.; Ouellette, S. B.; Azhir, A.; Kumar, N.; Hwang, J.; Lee, S.; Alver, B. H.; Pfister, H.; Mirny, L. A.; Park, P. J.; Gehlenborg, N.

10.1101/121889 — bioinformatics — Posted on 2018-06-04

2293 O-GlcNAc Homeostasis Controls Cell Fate Decisions During Hematopoiesis

Zhang, Z.; Parker, M. P.; Graw, S.; Novikova, L.; Fedosyuk, H.; Fontes, J.; Koestler, D.; Peterson, K.; Slawson, C.

10.1101/337881 — biochemistry — Posted on 2018-06-04

2294 COORDINATED TURNING BEHAVIOUR OF LOITERING HONEYBEES (APIS MELLIFERA)

Mahadeeswara, M. Y.; Srinivasan, M. V.

10.1101/332379 — animal behavior and cognition — Posted on 2018-06-04

2295 Atxn2-CAG100-knock-in affects mouse lifespan and vestibulo-cerebellar function via neural disconnection

Halbach, M. V.; Sen, N.-E.; Canet-Pons, J.; Kuppens, B. W.; Segers, M.; Schonewille, M.; Rollmann, E.; Seidel, K.; Rueb, U.; Meierhofer, D.; Mittelbronn, M.; Harter, P.; De Zeeuw, C. I.; Almaguer-Mederos, L. E.; Gispert, S.; Bosman, L. W. J.; Auburger, G.

10.1101/333443 — neuroscience — Posted on 2018-06-04

2296 ASTN2 modulates synaptic strength by trafficking and degradation of surface proteins

Behesti, H.; Fore, T.; Woo, P.; Horn, Z.; Leppert, M.; Hull, C.; Hatten, M. E.

10.1101/337618 — neuroscience — Posted on 2018-06-04

2297 Assessing sustainability in North America’s ecosystems using criticality and information theory

Ramirez-Carrillo, E.; Lopez-Corona, O.; Toledo-Roy, J. C.; Lovett, J. C.; de Leon-Gonzalez, F.; Osorio-Olvera, L.; Equihua, J.; Robredo, E.; Frank, A.; Dirzo, R.; Perez-Cirera, V.

10.1101/330415 — ecology — Posted on 2018-06-04

2298 Overexpressed microRNA-141-3p enhance proliferation via targeting PLAG1 in non-diabetic macrosomia

Guo, D.; Jiang, H.; Chen, Y.; Yang, J.; Fu, Z.; Li, J.; Han, X.; Wu, X.; Xia, Y.; Wang, X.-R.; Chen, L.; Tang, Q.; Wu, W.

10.1101/338335 — developmental biology — Posted on 2018-06-04

2299 The BTB-ZF transcription factor Tramtrack 69 shapes neural cell lineages by coordinating cell proliferation and cell fate

Simon, F.; Ramat, A.; Louvet-Vallee, S.; Burg, A.; Audibert, A.; Gho, M.

10.1101/338285 — developmental biology — Posted on 2018-06-04

2300 The Dimer-dependent Catalytic Activity of RAF Family Kinases Is Revealed Through Characterizing Their Oncogenic Mutants

Yuan, J.; Ng, W. H.; Lam, P. Y. P.; Wang, Y.; Xia, H.; Yap, J.; Guan, S. P.; Lee, A. S. G.; Wang, M.; Baccarini, M.; Hu, J.

10.1101/338293 — cancer biology — Posted on 2018-06-04

2301 Heteromeric GABAA receptor structures in positively-modulated active states

10.1101/338343 — biophysics — Posted on 2018-06-04

2302 Second harmonic generation polarization microscopy as a tool for protein structure analysis

Kaneshiro, J.; Okada, Y.; Shima, T.; Tsujii, M.; Imada, K.; Ichimura, T.; Watanabe, T. M.

10.1101/338137 — biophysics — Posted on 2018-06-04

2303 Prioritizing Small Molecule as Candidates for Drug Repositioning using Machine Learning

Shameer, K.; Johnson, K.; Glicksberg, B. S.; Hodos, R.; Readhead, B.; Tomlinson, M. S.; Dudley, J. T.

10.1101/331975 — bioinformatics — Posted on 2018-06-04

2304 Crystal structure of the MBD domain of MBD3 in complex with methylated CG DNA

Liu, K.; Lei, M.; Gan, B.; Cheng, H.; Li, Y.; Min, J.

10.1101/338061 — biochemistry — Posted on 2018-06-04

2305 Real-time projections of Ebola outbreak size and duration with and without vaccine use in Equateur, Democratic Republic of Congo, as of May 27, 2018

10.1101/331447 — epidemiology — Posted on 2018-06-04

2306 sFlt-1 commutes unfolded protein response into endoplasmic reticulum stress in trophoblast cells in preeclamptic pregnancies

Mochan, S.; Dhingra, M. K.; Kumar, A.; Gupta, S. K.; Saxena, S.; Arora, P.; Rani, N.; Sharma, A.; Luthra, K.; Dwivedi, S. N.; Bhatla, N.; Kumar, R.; Dhingra, R.

10.1101/297374 — developmental biology — Posted on 2018-06-04

2307 Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images

Caicedo, J. C.; Roth, J.; Goodman, A.; Becker, T.; Karhohs, K. W.; McQuin, C.; Singh, S.; Theis, F.; Carpenter, A. E.

10.1101/335216 — bioinformatics — Posted on 2018-06-04

2308 Dopamine D1 receptor availability is not associated with delusional ideation measures of psychosis proneness

Matheson, G. J.; Plaven-Sigray, P.; Louzolo, A.; Borg, J.; Farde, L.; Petrovic, P.; Cervenka, S.

10.1101/321646 — neuroscience — Posted on 2018-06-04

2309 Multiplex imaging of quantal glutamate release and presynaptic Ca2+ at multiple synapses in situ

Jensen, T. P.; Zheng, K.; Cole, N.; Marvin, J. S.; Looger, L. L.; Rusakov, D. A.

10.1101/336891 — neuroscience — Posted on 2018-06-04

2310 Genomic analysis of European Drosophila populations reveals longitudinal structure and continent-wide selection

Kapun, M.; Barron Aduriz, M. G.; Staubach, F.; Vieira, J.; Obbard, D.; Goubert, C.; Rota Stabelli, O.; Kankare, M.; Haudry, A.; Wiberg, R. A. W.; Waidele, L.; Kozeretska, I.; Pasyukova, E.; Loeschcke, V.; Pascual, M.; Vieira, C. P.; Serga, S.; Montchamp-Moreau, C.; Abbott, J.; Gibert, P.; Porcelli, D.; Posnien, N.; Grath, S.; Sucena, E.; Bergland, A.; Garcia Guerreiro, M. P.; Onder, B. S.; Argyridou, E.; Guio, L.; Schou, M. F.; Deplancke, B.; Vieira, C.; Ritchie, M. G.; Zwaan, B.; Tauber, E.; Orengo, D.; Puerma, E.; Aguade, M.; Schmidt, P.; Parsch, J.; Betancourt, A.; Flatt, T.; Gonzalez, J.

10.1101/313759 — evolutionary biology — Posted on 2018-06-04

2311 Characterizing animal movement patterns across different scales and habitats using information theory

Owoeye, K. A.; Musolesi, M.; Hailes, S.

10.1101/311241 — ecology — Posted on 2018-06-04

2312 Amplification and Suppression of Distinct Brain-wide Activity Patterns by Catecholamines

van den Brink, R. L.; Nieuwenhuis, S.; Donner, T. H.

10.1101/270645 — neuroscience — Posted on 2018-06-04

2313 Sexual reproduction in the fungal foliar pathogen Zymoseptoria tritici is driven by antagonistic density-dependence mechanisms

Suffert, F.; Delestre, G.; Gelisse, S.

10.1101/290072 — microbiology — Posted on 2018-06-04

2314 Tasman-PCR: A genetic diagnostic assay for Tasmanian devil facial tumour diseases

Kwon, Y.; Stammnitz, M. R.; Wang, J.; Swift, K.; Knowles, G. W.; Pye, R.; Kreiss, A.; Peck, S.; Fox, S.; Pemberton, D.; Jones, M.; Hamede, R.; Murchison, E. P.

10.1101/287847 — genetics — Posted on 2018-06-04

2315 Life history trade-offs in ectotherms impart a pseudo-hormetic response, not hormesis.

McCallum, M. L.; Mary, M.; Trauth, S. E.

10.1101/337279 — evolutionary biology — Posted on 2018-06-04

2316 Pleistocene climate change and the formation of regional species pools

Calatayud, J.; Rodriguez, M. A.; Molina-Venegas, R.; Leo, M.; Horreo, J. L.; Hortal, J.

10.1101/149617 — ecology — Posted on 2018-06-04

2317 Rapid Therapeutic Recommendations in the Context of a Global Public Health Crisis using Translational Bioinformatics Approaches: A proof-of-concept study using Nipah Virus Infection

Shameer, K.; Johnson, K. W.; Readhead, B.; Glicksberg, B.; McCallum, C.; R, A.; Hirsch, J.; Bock, K.; Chelico, J.; Hajizadeh, N.; Oppenheim, M.; Dudley, J.

10.1101/333021 — microbiology — Posted on 2018-06-04

2318 Genetic determinants of penicillin tolerance in Vibrio cholerae

Weaver, A. I.; Murphy, S. G.; Umans, B.; Tallavajhala, S.; Onyekwere, I.; Wittels, S.; Shin, J.-H.; VanNieuwenhze, M.; Waldor, M. K.; Dörr, T.

10.1101/337949 — microbiology — Posted on 2018-06-04

2319 Stability in the genetic structure of a Zymoseptoria tritici population from epidemic to interepidemic stages at a small spatial scale

Morais, D.; Duplaix, C.; Sache, I.; Laval, V.; Suffert, F.; Walker, A.-S.

10.1101/222380 — epidemiology — Posted on 2018-06-04

2320 Enterobacter cloacae complex ST171 Isolates Expressing KPC-4 Carbapenemase Recovered from Canine Patients in Ohio, USA

Daniels, J. B.; Chen, L.; Grooters, S. V.; Mollenkopf, D. F.; Mathys, D. A.; Kreiswirth, B. N.; Wittum, T. E.

10.1101/337428 — epidemiology — Posted on 2018-06-04

2321 Assessing the Relation between the Spatiotemporal Microhabitat Heterogeneity and the Dispersion Patterns of Two Syntopic Small Mammals in a Midlatitude Temperate Forest

De la Cruz-Arguello, I. M.; Castro-Campillo, A.; Zavala-Hurtado, A.; Salame-Mendez, A.; Ramirez-Pulido, J.

10.1101/278390 — ecology — Posted on 2018-06-04

2322 Deciphering the rules of mRNA structure differentiation in vivo and in vitro with deep neural networks in Saccharomyces cerevisiae

Yu, H.; Meng, W.; Mao, Y.; Zhang, Y.; Sun, Q.; Tao, S.

10.1101/337733 — bioinformatics — Posted on 2018-06-04

2323 Bayesian multiple logistic regression for case-control GWAS

Banerjee, S.; Zeng, L.; Schunkert, H.; Soeding, J.

10.1101/198911 — genetics — Posted on 2018-06-04

2324 A common molecular logic determines embryonic stem cell self-renewal and reprogramming

Dunn, S.-J.; Li, M. A.; Carbognin, E.; Smith, A. G.; Martello, G.

10.1101/200501 — developmental biology — Posted on 2018-06-04

2325 Identification of USP7 as an essential component to maintain integrity and function of non-canonical PRC1.1 in leukemia

Maat, H.; Jaques, J.; Rodriguez Lopez, A.; Hogeling, S.; de Vries, M. P.; Gravesteijn, C.; Brouwers-Vos, A.; Huls, G.; Vellenga, E.; van den Boom, V.; Schuringa, J. J.

10.1101/221093 — cancer biology — Posted on 2018-06-04

2326 Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods

Duchene, S.; Duchene, D.; Geoghegan, J.; Dyson, Z. A.; Hawkey, J.; Holt, K. E.

10.1101/190041 — bioinformatics — Posted on 2018-06-04

2327 Gene Regulatory Divergence Between Locally Adapted Ecotypes in Their Native Habitats

Gould, B. A.; Chen, Y.; Lowry, D. B.

10.1101/145805 — evolutionary biology — Posted on 2018-06-04

2328 Anatomical predictors of successful prism adaptation in chronic visual neglect

Lunven, M.; Rode, G.; Bourlon, C.; Duret, C.; Migliaccio, R.; Chevrillon, E.; Thiebaut de Schotten, M.; Bartolomeo, P.

10.1101/144956 — neuroscience — Posted on 2018-06-04

2329 Single neurons may encode simultaneous stimuli by switching between activity patterns

CARUSO, V. C.; Mohl, J. T.; Glynn, C.; Lee, J.; Willett, S. M.; Zaman, A.; Ebihara, A. F.; Estrada, R.; Freiwald, W.; Tokdar, S.; Groh, J. M.

10.1101/107185 — neuroscience — Posted on 2018-06-04

2330 Gene Expression-Based Drug Repurposing to Target Ageing

Donertas, H. M.; Fuentealba Valenzuela, M.; Partridge, L.; Thornton, J.

10.1101/253344 — systems biology — Posted on 2018-06-04

2331 Using composite phenotypes to reveal heterogeneity and model SpO2 of altitude acclimatization

Li, Y.; Wang, Y.; Zhang, M.-H.; Ma, Y.; Wang, K.; Liu, X.; Hao, M.; Pu, W.; Sun, C.; Wang, X.; Chen, X.; Zhang, Y.; Duan, W.; Kang, L.; Qiao, B.; Wang, J.; Jin, L.

10.1101/336446 — systems biology — Posted on 2018-06-04

2332 Haploid selection, sex ratio bias, and transitions between sex-determining systems

Scott, M. F.; Osmond, M. M.; Otto, S. P.

10.1101/269431 — evolutionary biology — Posted on 2018-06-04

2333 Functional connectivity-based subtypes of individuals with and without autism spectrum disorder

Easson, A. K.; Fatima, Z.; McIntosh, A. R.

10.1101/198093 — neuroscience — Posted on 2018-06-04

2334 fMRI salience signals in antipsychotic naive first episode psychosis

Knolle, F.; Ermakova, A. O.; Justicia, A.; Fletcher, P. C.; Bunzeck, N.; Duzel, E.; Murray, G.

10.1101/263020 — neuroscience — Posted on 2018-06-04

2335 Head-Direction drift in rat pups is consistent with an angular path-integration process

Tocker, G.; Borodach, E.; Bjerknes, T. L.; Moser, M.-B.; Moser, E. I.; Derdikman, D.

10.1101/212852 — bioinformatics — Posted on 2018-06-04

2336 Different Brain Networks Underlying Intelligence In Autism Spectrum Disorders And Typically Developing Children

Pua, E. P. K.; Malpas, C.; Bowden, S.; Seal, M.

10.1101/143891 — neuroscience — Posted on 2018-06-04

2337 Analyzing contentious relationships and outlier genes in phylogenomics

Walker, J. F.; Brown, J. W.; Smith, S. A.

10.1101/115774 — evolutionary biology — Posted on 2018-06-04

2338 Simulating human sleep spindle MEG and EEG from ion channel and circuit level dynamics

Rosen, B. Q.; Krishnan, G.; Sanda, P.; Komarov, M.; Sejnowski, T.; Rulkov, N.; Bazhenov, M.; Halgren, E.

10.1101/202606 — neuroscience — Posted on 2018-06-04

2339 Headache and type 2 diabetes association: a US national ambulatory case-control study.

Nash, A.; Nevado Holgado, A. J.; Lovestone, S.; Cader, Z.; Webber, C. P.

10.1101/336586 — epidemiology — Posted on 2018-06-04

2340 Headache and type 2 diabetes association: a US national ambulatory case-control study.

Nash, A.; Nevado Holgado, A. J.; Lovestone, S.; Cader, Z.; Webber, C. P.

10.1101/336586 — epidemiology — Posted on 2018-06-04

2341 Enterobacter cloacae complex ST171 Isolates Expressing KPC-4 Carbapenemase Recovered from Canine Patients in Ohio, USA

Daniels, J. B.; Wittum, T. E.; Chen, L.; Kreiswirth, B. N.; Grooters, S. V.; Mathys, D. A.; Mollenkopf, D. F.

10.1101/337428 — epidemiology — Posted on 2018-06-04

2342 Diagnostic algorithms to study post-concussion syndrome using electronic health records: validating a method to capture an important patient population

Dennis, J.; Yengo-Kahn, A.; Kirby, P.; Solomon, G. S.; Cox, N.; Zuckerman, S. L.

10.1101/336560 — epidemiology — Posted on 2018-06-04

2343 Developing A Programmable, Self-Assembling Squash Leaf Curl China Virus (SLCCNV) Capsid Proteins Into \"Nano-Cargo\"-Like Architecture: A Next-Generation \"Nanotool\" For Biomedical Applications

krishnan, k.; Thangavelu, R. m.; sundarajan, D.; S.U, M. R.; Denison, M. I. J. e.; Gunasekaran, D.; Ganapathi, R.; Duraisamy, N.

10.1101/338269 — systems biology — Posted on 2018-06-04

2344 ALV-J and REV synergistically activate a new oncogene of KIAA1199 via NF-κB and EGFR signaling regulated by miR-147

Zhou, D.; Xue, J.; Zhuang, P.; Cui, X.; He, S.; Su, S.; Wang, G.; Zhang, L.; Li, C.; Huang, L.; Shang, Y.; Yao, Y.; Nair, V.; Zhang, H.; cheng, z.

10.1101/338244 — molecular biology — Posted on 2018-06-04

2345 A comparative genome analysis of Rift Valley Fever virus isolates from foci of the disease outbreak in South Africa in 2008-2010

Majiwa, P.; Maluleke, M. R.; Phosiwa, M.; van Schalkwyk, A.; Michuki, G.; Lubisi, B. A.; Kegakilwe, P. S.; Kemp, S. J.

10.1101/338251 — genomics — Posted on 2018-06-04

2346 Bacillus thuringiensis targets the host intestinal epithelial junctions for successful infection of Caenorhabditis elegans

Wan, L.; Lin, J.; Du, H.; Bravo, A.; Soberon, M.; Peng, D.; Sun, M.

10.1101/338236 — microbiology — Posted on 2018-06-04

2347 Functionally distinct ERAP1 and ERAP2 are a hallmark of HLA-A29-(Birdshot) Uveitis.

Kuiper, J. J.; Setten, J. v.; Devall, M.; Cretu-Stancu, M.; Hiddingh, S.; Ophoff, R. A.; Missotten, T.; Velthoven, M. v.; Hollander, A. D.; Hoyng, C.; James, E.; Reeves, E.; Cordero-Coma, M.; Fonollosa, A.; Adan, A.; Martin, J.; Koeleman, B. P.; de Boer, J. H.; Pulit, S. L.; Marquez, A. M.; Radstake, T. R.

10.1101/338228 — genetics — Posted on 2018-06-04

2348 Proteome-Scale Relationships Between Local Amino Acid Composition and Protein Fates and Functions

Cascarina, S. M.; Ross, E. D.

10.1101/338202 — bioinformatics — Posted on 2018-06-04

2349 POPSICLE: A Software Suite to Study Population Structure and Ancestral Determinants of Phenotypes using Whole Genome Sequencing Data

Shaik, J. S.; Khan, A.; Grigg, M. E.

10.1101/338210 — bioinformatics — Posted on 2018-06-04

2350 Precise prediction of antibiotic resistance in Escherichia coli from full genome sequences

Moradigaravand, D.; Palm, M.; Farewell, A.; Mustonen, V.; Warringer, J.; Parts, L.

10.1101/338194 — bioinformatics — Posted on 2018-06-04

2351 A novel PCR method directly quantifies sequence features that block primer extension

Cawthon, R. M.

10.1101/325308 — genomics — Posted on 2018-06-03

2352 Thermal plasticity of the circadian clock is under nuclear and cytoplasmic control in wild barley

Bdolach, E.; Ranjan, M.; Faigenboim-Doron, A.; Filichkin, T.; Helgerson, L.; Schmid, K. J.; Greiner, S.; Fridman, E.

10.1101/330829 — genetics — Posted on 2018-06-03

2353 Polymer brush bilayers at thermal equilibrium: A theoretical approach

Farzin, M.

10.1101/316141 — biophysics — Posted on 2018-06-03

2354 Penalized matrix decomposition for denoising, compression, and improved demixing of functional imaging data

Buchanan, E. K.; Kinsella, I.; Zhou, D.; Zhu, R.; Zhou, P.; Gerhard, F.; Ferrante, J.; Ma, Y.; Kim, S.; Shaik, M.; Liang, Y.; Lu, R.; Reimer, J.; Fahey, P.; Muhammad, T.; Dempsey, G.; Hillman, E.; Ji, N.; Tolias, A.; Paninski, L.

10.1101/334706 — neuroscience — Posted on 2018-06-03

2355 Identification and design of vinyl sulfone inhibitors against Cryptopain-1, which is a cysteine protease from cryptosporidiosis causingCryptosporidium parvum

Banerjee, A.; Abagyan, R.

10.1101/332965 — bioinformatics — Posted on 2018-06-03

2356 Biophysical underpinning of astroglial physiology probed with realistic cell models

Savtchenko, L. P.; Bard, L.; Jansen, T. P.; Reynolds, J. P.; Kraev, I.; Medvidov, M.; Stewart, M. G.; Henneberger, C.; Rusakov, D.

10.1101/336974 — neuroscience — Posted on 2018-06-03

2357 Multiplex imaging of quantal glutamate release and presynaptic Ca2+ at multiple synapses in situ

Jensen, T. P.; Zheng, K.; Cole, N.; Marvin, J. S.; Looger, L. L.; Rusakov, D. A.

10.1101/336891 — neuroscience — Posted on 2018-06-03

2358 Cell shape independent FtsZ dynamics in synthetically remodeled cells

Söderström, B.; Badrutdinov, A.; Chan, H.; Skoglund, U.

10.1101/335356 — microbiology — Posted on 2018-06-03

2359 A domestication history of dynamic adaptation and genomic deterioration in sorghum

Smith, O.; Nicholson, W. V.; Kistler, L.; Mace, E.; Clapham, A.; Rose, P.; Stevens, C.; Ware, R. L.; Samavedam, S.; Barker, G.; Jordan, D.; Fuller, D. Q.; Allaby, R. G.

10.1101/336503 — evolutionary biology — Posted on 2018-06-03

2360 Dynamic decoupling of biomass and lipid biosynthesis by autonomously regulated switch

Santala, S.; Efimova, E.; Santala, V.

10.1101/337790 — synthetic biology — Posted on 2018-06-03

2361 Evaluating cancer cell lines as models for metastatic breast cancer

Liu, K.; Newbury, P.; Glicksberg, B.; Andrechek, E.; Chen, B.

10.1101/337287 — bioinformatics — Posted on 2018-06-03

2362 Selection for protein stability enriches for epistatic interactions

Posfai, A.; Zhou, J.; Plotkin, J. B.; Kinney, J. B.; McCandlish, D. M.

10.1101/338004 — evolutionary biology — Posted on 2018-06-03

2363 FADS1 and the timing of human adaptation to agriculture

Mathieson, S.; Mathieson, I.

10.1101/337998 — evolutionary biology — Posted on 2018-06-03

2364 Benchmark and integration of resources for the estimation of human transcription factor activities

Garcia-Alonso, L.; Ibrahim, M. M.; Turei, D.; Saez-Rodriguez, J.

10.1101/337915 — bioinformatics — Posted on 2018-06-03

2365 circuitSNPs: Predicting genetic effects using a Neural Network to model regulatory modules of DNase-seq footprints

Shanku, A. G.; Findley, A.; Kalita, C. A.; Shim, H.; Luca, F.; Pique-Regi, R.

10.1101/337774 — bioinformatics — Posted on 2018-06-03

2366 Deciphering the rules which mRNA structures differs from vivo and vitro in Saccharomyces cerevisiae by deep neural networks

Yu, H.; Meng, W.; Mao, Y.; Zhang, Y.; Sun, Q.; Tao, S.

10.1101/337733 — bioinformatics — Posted on 2018-06-03

2367 Dynamic decoupling of biomass and lipid biosynthesis by autonomously regulated switch

Santala, S.; Efimova, E.; Santala, V.

10.1101/337790 — synthetic biology — Posted on 2018-06-03

2368 Cryo-EM structure of the benzodiazepine-sensitive α1β1γ2 heterotrimeric GABAA receptor in complex with GABA illuminates mechanism of receptor assembly and agonist binding

Phulera, S.; Zhu, H.; Yu, J.; Claxton, D.; Yoder, N.; Yoshioka, C.; Gouaux, E.

10.1101/337659 — biophysics — Posted on 2018-06-03

2369 General Functional Connectivity: shared features of resting-state and task fMRI drive reliable individual differences in functional brain networks

Elliott, M. L.; Knodt, A. R.; Kim, M. J.; Melzer, T. R.; Keenan, R.; Ireland, D.; Ramrakha, S.; Poulton, R.; Caspi, A.; Moffitt, T. E.; Hariri, A. R.

10.1101/330530 — neuroscience — Posted on 2018-06-03

2370 Lineage space and the propensity of bacterial cells to undergo growth transitions

Bandyopadhyay, A.; Wang, H.; Ray, J. C. J.

10.1101/256123 — systems biology — Posted on 2018-06-03

2371 gwasurvivr: an R package for genome wide survival analysis

Rizvi, A. A.; Karaesmen, E.; Morgan, M.; Preus, L.; Wang, J.; Hahn, T.; Sovic, M.; Sucheston-Campbell, L.

10.1101/326033 — genomics — Posted on 2018-06-03

2372 Seroprevalence of Hepatitis B and C among Healthcare Workers in Dutse Metropolis Jigawa State, Nigeria

Sani, N. M.; Bitrus, I.; Sarki, A. M.; Mujahid, N. S.

10.1101/327940 — epidemiology — Posted on 2018-06-03

2373 Prenatal Bisphenol A Exposure in Mice Induces Multi-tissue Multi-omics Disruptions Linking to Cardiometabolic Disorders

Shu, L.; Meng, Q.; Tsai, B.; Diamente, G.; Chen, Y.-w.; Mikhail, A.; Luk, H.; Ritz, B.; Allard, P.; Yang, X.

10.1101/336214 — systems biology — Posted on 2018-06-03

2374 Genomic meta-analysis of the interplay between 3D chromatin organization and gene expression programs under basal and stress conditions

Nurick, I.; Shamir, R.; Elkon, R.

10.1101/337766 — genomics — Posted on 2018-06-03

2375 Functional testing of a human PBX3 variant in zebrafish reveals a potential modifier role in congenital heart defects

Farr, G. H.; Imani, K.; Pouv, D.; Maves, L.

10.1101/337832 — genetics — Posted on 2018-06-03

2376 Disentangling the effects of genetic architecture, mutational bias and selection on evolutionary forecasting

Lind, P. A.; Libby, E.; Herzog, J.; Rainey, P. B.

10.1101/335711 — evolutionary biology — Posted on 2018-06-03

2377 Combining Multi-Site/Multi-Study MRI Data: Linked-ICA Denoising for Removing Scanner and Site Variability from Multimodal MRI Data

Li, H.; Smith, S. M.; Gruber, S. A.; Lukas, S. E.; Silveri, M. M.; Hill, K. P.; Killgore, W. D. S.; Nickerson, L. D.

10.1101/337576 — neuroscience — Posted on 2018-06-03

2378 Competition and Synergy Between Prochlorococcus and Synechococcus Under Ocean Acidification Conditions

Morris, J. J.; Knight, M.

10.1101/337378 — microbiology — Posted on 2018-06-03

2379 FADU: A Feature Counting Tool for Prokaryotic RNA-Seq Analysis

Chung, M.; Adkins, R. S.; Shetty, A. C.; Sadzewicz, L.; Tallon, L. J.; Fraser, C. M.; Rasko, D. A.; Mahurkar, A.; Dunning Hotopp, J.

10.1101/337600 — genomics — Posted on 2018-06-03

2380 Using composite phenotypes to reveal heterogeneity and model SpO2 of altitude acclimatization

Li, Y.; Wang, Y.; Zhang, M.-H.; Ma, Y.; Wang, K.; Liu, X.; Hao, M.; Pu, W.; Sun, C.; Wang, X.; Chen, X.; Zhang, Y.; Duan, W.; Kang, L.; Qiao, B.; Wang, J.; Jin, L.

10.1101/336446 — systems biology — Posted on 2018-06-03

2381 TuxNet: A simple interface to process RNA sequencing data and infer gene regulatory networks

de Luis Balaguer, M. A.; Spurney, R. J.; Clark, N.; Fisher, A. P.; Sozzani, R.

10.1101/337147 — plant biology — Posted on 2018-06-03

2382 An examination of the evolve-and-resequence method using Drosophila simulans

Kelly, J. K.; Hughes, K.

10.1101/337188 — evolutionary biology — Posted on 2018-06-03

2383 Genome plasticity in Papillomaviruses and de novo emergence of E5 oncogenes

Felez-Sanchez, M.; Willemsen, A.; Bravo, I.

10.1101/337477 — evolutionary biology — Posted on 2018-06-03

2384 Building a mechanistic mathematical model of hepatitis C virus entry

Kalemera, M.; Mincheva, D.; Grove, J.; Illingworth, C.

10.1101/336495 — pathology — Posted on 2018-06-03

2385 Stimulus-driven brain rhythms within the alpha band: The attentional-modulation conundrum

Keitel, C.; Keitel, A.; Benwell, C. S.; Daube, C.; Thut, G.; Gross, J.

10.1101/336941 — neuroscience — Posted on 2018-06-03

2386 Cost Effective, Experimentally Robust Differential Expression Analysis for Human/Mammalian, Pathogen, and Dual-Species Transcriptomics

Shetty, A.; Mahurkar, A.; Filler, S.; Fraser, C. M.; Rasko, D. A.; Bruno, V. M.; Dunning Hotopp, J. C.

10.1101/337527 — genomics — Posted on 2018-06-03

2387 Life history trade-offs in ectotherms impart a pseudo-hormetic response, not hormesis.

McCallum, M. L.; Mary, M.; Trauth, S. E.

10.1101/337279 — evolutionary biology — Posted on 2018-06-03

2388 COORDINATED TURNING BEHAVIOUR OF LOITERING HONEYBEES (APIS MELLIFERA)

Mahadeeswara, M. Y.; Srinivasan, M. V.

10.1101/332379 — animal behavior and cognition — Posted on 2018-06-03

2389 Nitrogen utilization and transformation of Stenotrophomonas maltophilia W-6 with nitrogen-fixing ability

Maggie Wang, S.; Xu, Y.; Li, Z.

10.1101/337386 — microbiology — Posted on 2018-06-03

2390 On the overlap between scientific and societal taxonomic attention - insights for conservation

Jaric, I.; Correia, R. A.; Roberts, D. L.; Gessner, J.; Meinard, Y.; Courchamp, F.

10.1101/334573 — ecology — Posted on 2018-06-03

2391 Childhood socioeconomic status moderates genetic predisposition for peak smoking

Bierut, L.; Biroli, P.; Galama, T.; Thom, K.

10.1101/336834 — genomics — Posted on 2018-06-03

2392 A critical assessment of data quality and venous effects in ultra-high-resolution fMRI

Kay, K.; Jamison, K.; Vizioli, L.; Zhang, R.; Margalit, E.; Ugurbil, K.

10.1101/337667 — neuroscience — Posted on 2018-06-03

2393 Disruption of cortical dopaminergic modulation delays licking initiation

Chen, K.; Vincis, R.; Fontanini, A.

10.1101/337014 — neuroscience — Posted on 2018-06-03

2394 Functional diversity of brain networks supports consciousness and verbal intelligence

Naci, L.; Haugg, A.; MacDonald, A.; Anello, M.; Houldin, E.; Naqshbandi, S.; Gonzalez-Lara, L. E.; Arango, M.; Harle, C.; Cusack, R.; Owen, A. M.

10.1101/336859 — neuroscience — Posted on 2018-06-03

2395 Molecular evolution of juvenile hormone esterase-like proteins in a socially exchanged fluid

LeBoeuf, A. C.; Cohanim, A. B.; Stoffel, C.; Brent, C. S.; Waridel, P.; Privman, E.; Keller, L.; Benton, R.

10.1101/337568 — evolutionary biology — Posted on 2018-06-03

2396 Chemogenetic inhibition of ventral tegmental area dopamine neurons or their inputs to the nucleus accumbens disrupts cue-triggered reward seeking but not reward taking

Halbout, B.; Marshall, A. T.; Azimi, A.; Liljeholm, M.; Mahler, S. V.; Wassum, K. M.; Ostlund, S. B.

10.1101/272963 — neuroscience — Posted on 2018-06-03

2397 Chronic intermittent ethanol exposure selectively increases synaptic excitability in the ventral domain of the rat hippocampus

Ewin, S. E.; Morgan, J. W.; Nierre, F.; McMullen, N. P.; Barth, S. H.; Almonte, A. G.; Raab-Graham, K. F.; Weiner, J. L.

10.1101/337097 — neuroscience — Posted on 2018-06-03

2398 Smaller Hippocampal CA-1 Subfield Volume in Posttraumatic Stress Disorder

Chen, L. W.; Sun, D.; Davis, S. L.; Haswell, C. C.; Dennis, E. L.; Swanson, C. A.; Whelan, C. D.; Gutman, B.; Jahanshad, N.; Iglesias, J. E.; Thompson, P.; Mid-Atlantic MIRECC Workgroup, ; Wagner, H. R.; Saemann, P.; LaBar, K. S.; Morey, R. A.

10.1101/337030 — neuroscience — Posted on 2018-06-03

2399 Mapping the genetics of neuropsychological traits to the molecular network of the human brain using a data integrative approach

Yousaf, A.; Duketis, E.; Jarczok, T.; Sachse, M.; Biscaldi, M.; Degenhardt, F.; Herms, S.; Chichon, S.; Klauck, S. M.; Ackermann, J.; Freitag, C. M.; Chiocchetti, A. G.; Koch, I.

10.1101/336776 — bioinformatics — Posted on 2018-06-03

2400 MHC GENETIC VARIATION INFLUENCES BOTH OLFACTORY SIGNALS AND SCENT DISCRIMINATION IN RING-TAILED LEMURS

Grogan, K.; Harris, R.; Boulet, M.; Drea, C.

10.1101/337105 — animal behavior and cognition — Posted on 2018-06-03

2401 Maternal cannabinoid exposure during lactation alters the developmental trajectory of prefrontal cortex GABA-currents in offspring

Scheyer, A. F.; Wager-Miller, J.; Pelissier-Alicot, A.-L.; Murphy, M. N.; Mackie, K.; Manzoni, O. J.

10.1101/336735 — neuroscience — Posted on 2018-06-03

2402 Adaptation of Whisker Movements Requires Cerebellar Potentiation

Romano, V.; De Propris, L.; Bosman, L. W. J.; Warnaar, P.; Brinke, M. M. t.; Lindeman, S.; Ju, C.; Velauthapillai, A.; Spanke, J. K.; Middendorp Guerra, E.; Hoogland, T. M.; Negrello, M.; D'Angelo, E.; De Zeeuw, C. I.

10.1101/335489 — neuroscience — Posted on 2018-06-03

2403 Somatosensory responses to nothing: an MEG study of expectations during omission of tactile stimulations

Andersen, L. M.; Lundqvist, D.

10.1101/336479 — neuroscience — Posted on 2018-06-03

2404 Functional connectivity mechanisms subserving automatic emotion regulation by implementation intention

Chen, S.; Ding, N.; Biswal, B.; Li, Z.; Qin, S.; Xie, C.; Chen, C.; Yuan, J.

10.1101/336800 — neuroscience — Posted on 2018-06-03

2405 Broad geographic sampling reveals predictable and pervasive seasonal adaptation in Drosophila

Machado, H.; Bergland, A. O.; Taylor, R.; Tilk, S.; Behrman, E.; Dyer, K.; Fabian, D.; Flatt, T.; Gonzalez, J.; Karasov, T.; Kozeretska, I.; Lazzaro, B.; Merritt, T.; Pool, J.; O'Brien, K.; Rajpurohit, S.; Roy, P.; Schaeffer, S.; Serga, S.; Schmidt, P.; Petrov, D.

10.1101/337543 — evolutionary biology — Posted on 2018-06-03

2406 Habituation and individual variation in the endocrine stress response in the Trinidadian guppy (Poecilia reticulata)

Houslay, T. M.; Earley, R. L.; Young, A. J.; Wilson, A. J.

10.1101/337006 — physiology — Posted on 2018-06-03

2407 β-cyclocitral is a natural root growth regulator

Dickinson, A. J.; Lehner, K.; Mijar, M.; Benfey, P. N.

10.1101/337162 — developmental biology — Posted on 2018-06-03

2408 Impact of efavirenz, ritonavir-boosted lopinavir and nevirapine based antiretroviral regimens on the pharmacokinetics of lumefantrine and safety of artemether-lumefantrine in falciparum-negative HIV-infected Malawian adults stabilized on antiretroviral therapy

Banda, C. G.; Dzinjalamala, F. K.; Mukaka, M.; Mallewa, J.; Maiden, V.; Terlouw, D. J.; Lalloo, D. G.; Khoo, S.; Mwapasa, V.

10.1101/337410 — pharmacology and toxicology — Posted on 2018-06-03

2409 Codon stabilization coefficient as an index for prediction of codon bias and its potential applications.

Carneiro, R. L.; Requiao, R. D.; Rossetto, S.; Domitrovic, T.; Palhano, F. L.

10.1101/337634 — bioinformatics — Posted on 2018-06-03

2410 Multiplex imaging of quantal glutamate release and presynaptic Ca2+ at multiple synapses in situ

Jensen, T. P.; Zheng, K.; Cole, N.; Marvin, J. S.; Looger, L. L.; Rusakov, D. A.

10.1101/336891 — neuroscience — Posted on 2018-06-02

2411 Turing-like patterns can arise from purely bioelectric mechanisms

Brodsky, M.

10.1101/336461 — developmental biology — Posted on 2018-06-02

2412 Nociceptor translational profiling reveals the RagA-mTORC1 network as a critical generator of neuropathic pain

Megat, S.; Ray, P.; Moy, J.; Lou, T.-F.; Barragan-Iglesias, P.; Li, Y.; Pradhan, G.; Wangzhou, A.; Ahmad, A.; North, R.; Dougherty, P.; Khoutorsky, A.; Sonenberg, N.; Webster, K.; Dussor, G.; Campbell, Z.; Price, T.

10.1101/336784 — neuroscience — Posted on 2018-06-02

2413 Biophysical underpinning of astroglial physiology probed with realistic cell models

Savtchenko, L. P.; Bard, L.; Jansen, T. P.; Reynolds, J. P.; Kraev, I.; Medvidov, M.; Stewart, M. G.; Henneberger, C.; Rusakov, D.

10.1101/336974 — neuroscience — Posted on 2018-06-02

2414 Deregulation of LRSAM1 expression impairs the levels of TSG101, UBE2N, VPS28, MDM2 and EGFR

Christodoulou, K.; Minaidou, A.; Nicolaou, P.

10.1101/337451 — neuroscience — Posted on 2018-06-02

2415 Interactions between microtubule-driven membrane protrusions induce filament bundling

Vahid, A.; Idema, T.

10.1101/336545 — biophysics — Posted on 2018-06-02

2416 Continuous visualization of differences between biological conditions in single-cell data

Burns, T. J.; Nolan, G. P.; Samusik, N.

10.1101/337485 — systems biology — Posted on 2018-06-02

2417 Optogenetic silencing of immature and mature neurons in dentate gyrus to assess their roles in memory discriminations

van Dijk, M. T.; Fenton, A. A.

10.1101/335992 — neuroscience — Posted on 2018-06-02

2418 Tissue-specific Gene Expression Prediction Associates Vitiligo with SUOX through an Active Enhancer

Qi, Z.; Xie, S.; Chen, R.; Aisa, H. A.; Hon, G. C.; Guan, Y.

10.1101/337196 — genetics — Posted on 2018-06-02

2419 Isolating and Quantifying the Role of Developmental Noise in Generating Phenotypic Variation

Kiskowski, M. A.; Glimm, T.; Moreno, N.; Gamble, T.; Chiari, Y.

10.1101/334961 — developmental biology — Posted on 2018-06-02

2420 Closed-loop coupling of a muscle to a robotic device for dynamic assessment of muscle function

Sundar, K.; Ting, L.; Deweerth, S. P.

10.1101/337303 — physiology — Posted on 2018-06-02

2421 Ataxia Telangiectasia triggers deficits in Reelin pathway

Canet-Pons, J.; Schubert, R.; Duecker, R. P.; Schrewe, R.; Woelke, S.; Schnoelzer, M.; Auburger, G.; Zielen, S.; Warnken, U.

10.1101/336842 — neuroscience — Posted on 2018-06-02

2422 High throughput screen identifies IFN-γ-dependent inhibitors of Toxoplasma gondii growth

Radke, J. B.; Carey, K. L.; Shaw, S.; Metkar, S. R.; Mulrooney, C.; Gale, J. P.; Bittker, J. A.; Hilgraf, R.; Comer, E.; Schreiber, S. L.; Virgin, H. W.; Perez, J. R.; Sibley, L. D. D.

10.1101/336818 — microbiology — Posted on 2018-06-02

2423 Increased Cerebral Blood Flow after single dose of antipsychotics in healthy volunteers depends on dopamine D2 receptor density profiles.

Selvaggi, P.; Hawkins, P. C.; Dipasquale, O.; Rizzo, G.; Bertolino, A.; Dukart, J.; Sambataro, F.; Pergola, G.; Williams, S. C.; Turkheimer, F. E.; Zelaya, F.; Veronese, M.; Mehta, M. A.

10.1101/336933 — pharmacology and toxicology — Posted on 2018-06-02

2424 Long-range order from local interactions: organization and development of distributed corticalnetworks

Smith, G. B.; Hein, B.; Whitney, D. E.; Fitzpatrick, D.; Kaschube, M.

10.1101/335828 — neuroscience — Posted on 2018-06-02

2425 PARP10 promotes cellular proliferation and tumorigenesis by alleviating replication stress

Schleicher, E. M.; Galvan, A. M.; Moldovan, G.-L.; Nicolae, C.

10.1101/337220 — cancer biology — Posted on 2018-06-02

2426 Evaluating cancer cell lines as models for metastatic breast cancer

Liu, K.; Newbury, P.; Glicksberg, B.; Andrechek, E.; Chen, B.

10.1101/337287 — bioinformatics — Posted on 2018-06-02

2427 Machine learning for randomised controlled trials: identifying treatment effect heterogeneity with strict control of type I error

Holmes, C. C.; Watson, J. A.

10.1101/330795 — bioinformatics — Posted on 2018-06-02

2428 Novel Staphylococcal Cassette Chromosome composite island (SCC-CI) with a new subtype of SCCmecVI cassette found in ST5 MRSA in France

BARRAUD, O.; Laurent, F.; Dyon-Tafani, V.; Dupieux-Chabert, C.; Bes, M.; Ploy, M.-C.; Garnier, F.; Martins Simoes, P.

10.1101/336396 — microbiology — Posted on 2018-06-02

2429 An expanded toolkit for gene tagging based on MiMIC and scarless CRISPR tagging in Drosophila

Li-Kroeger, D.; Kanca, O.; Lee, P.-T.; Cowan, S.; Lee, M.; Jaiswal, M.; Salazar, J. L.; He, Y.; Bellen, H.

10.1101/337337 — genetics — Posted on 2018-06-02

2430 Dll1 and Jag1 are Differentially Required to Specify Proximal and Distal Pancreatic Duct Compartments

Seymour, P. A.; Collin, C. A.; Jorgensen, M. C.; Imayoshi, I.; Kageyama, R.; Serup, P.

10.1101/336529 — developmental biology — Posted on 2018-06-02

2431 Selecting precise reference normal tissue samples for cancer research using a deep learning approach

Zeng, W.; Glicksberg, B.; Li, Y.; Chen, B.

10.1101/336909 — bioinformatics — Posted on 2018-06-02

2432 IL-11 is a therapeutic target in idiopathic pulmonary fibrosis

Cook, S.; Ng, B.; Dong, J.; Viswanathan, S.; DAgostino, G.; Widjaja, A.; Lim, W.-W.; Ko, N.; Tan, J.; Chothani, S.; Huang, B.; Xie, C.; Chacko, A.-M.; Guimaraes-Camboa, N.; Evans, S.; Byrne, A.; Maher, T.; Liang, J.; Noble, P.; Schafer, S.

10.1101/336537 — molecular biology — Posted on 2018-06-02

2433 Collagen assembly and turnover imaged with a CRISPR-Cas9 engineered Dendra2 tag

Pickard, A.; Adamson, A.; Lu, Y.; Chang, J.; Garva, R.; Hodson, N.; Kadler, K.

10.1101/331496 — cell biology — Posted on 2018-06-02

2434 A non-canonical metal center drives activity of the Sediminispirochaeta smaragdinae metallo-β- lactamase SPS-1

Cheng, Z.; VanPelt, J.; Bergstrom, A.; Bethel, C.; Katko, A.; Miller, C.; Mason, K.; Cumming, E.; Zhang, H.; Kimble, R.; Fullington, S.; Bretz, S. L.; Nix, J. C.; Bonomo, R. A.; Tierney, D. L.; Page, R. C.; Crowder, M. W.

10.1101/336024 — biochemistry — Posted on 2018-06-02

2435 In vivo virulence characterization of pregnancy-associated Listeria monocytogenes infections

Morrison, H. A.; Lowe, D. E.; Robbins, J. R.; Bakardjiev, A. I.

10.1101/337444 — microbiology — Posted on 2018-06-02

2436 Comparative transcriptomics of albino and warningly coloured caterpillars

Galarza, J. A.

10.1101/336636 — evolutionary biology — Posted on 2018-06-02

2437 A domestication history of dynamic adaptation and genomic deterioration in sorghum

Smith, O.; Nicholson, W. V.; Kistler, L.; Mace, E.; Clapham, A.; Rose, P.; Stevens, C.; Ware, R. L.; Samavedam, S.; Barker, G.; Jordan, D.; Fuller, D. Q.; Allaby, R. G.

10.1101/336503 — evolutionary biology — Posted on 2018-06-02

2438 Lightweight bioinformatics: evaluating the utility of Single Board Computer (SBC) clusters for portable, scalable Real-Time Bioinformatics in fieldwork environments via benchmarking.

Parker, J.

10.1101/337212 — bioinformatics — Posted on 2018-06-02

2439 Image Scanning Microscopy with Single-Photon Detector Array

Castello, M.; Tortarolo, G.; Buttafava, M.; Deguchi, T.; Villa, F.; Koho, S.; Bianchini, P.; Sheppard, C. J. R.; Diaspro, A.; Tosi, A.; Vicidomini, G.

10.1101/335596 — bioengineering — Posted on 2018-06-02

2440 Proteomic Analysis of Urine from California Sea Lions (Zalophus californianus): a Resource for Urinary Biomarker Discovery

Neely, B. A.; Prager, K. C.; Bland, A. M.; Fontaine, C.; Gulland, F. M.; Janech, M. G.

10.1101/336867 — biochemistry — Posted on 2018-06-02

2441 The identification of critical lethal action in antimicrobial mechanism of glycerol monomyristate against foodborne pathogens

Zhang, S.; Xiong, J.; Lou, W.; Ning, Z.; Zhang, D.; Yang, J.

10.1101/336354 — microbiology — Posted on 2018-06-02

2442 Hook length of the bacterial flagellum is controlled to nanometer-scale for optimal motility performance

Spöring, I.; Martinez, V. A.; Hotz, C.; Schwarz-Linek, J.; Grady, K. L.; Nava-Sedeno, J. M.; Vissers, T.; Singer, H. M.; Rohde, M.; Bourquin, C.; Hatzikirou, H.; Poon, W. C.; Dufour, Y.; Erhardt, M.

10.1101/336602 — microbiology — Posted on 2018-06-02

2443 Genetic diversity and distribution of indigenous soybean-nodulating bradyrhizobia in the Philippines

Mason, M. L. T.; Tabing, B. L. C.; YAMAMOTO, A.; SAEKI, Y.

10.1101/337394 — microbiology — Posted on 2018-06-02

2444 Species tree-aware simultaneous reconstruction of gene and domain evolution

Muhammad, S. A.; Sennblad, B.; Lagergren, J.

10.1101/336453 — bioinformatics — Posted on 2018-06-02

2445 Identification of pathogens in culture-negative infective endocarditis with metagenomic analysis

Cheng, J.; Hu, H.; Kang, Y.; Chen, W.; Fang, W.; Wang, K.; Zhang, Q.; Fu, A.; Zhou, S.; Cheng, C.; Cao, Q.; Wang, F.-Y.; Lee, S.; Zhou, Z.

10.1101/336388 — microbiology — Posted on 2018-06-02

2446 Synergistic Activity of Silver Nanoparticles and Vancomycin Against a Spectrum of Staphylococcus aureus Biofilm Types

Hair, B. B.; Conley, M. E.; Wienclaw, T. M.; Conley, M. J.; Berges, B. K.

10.1101/337436 — microbiology — Posted on 2018-06-02

2447 Enhanced Synthesis of Poly Gamma Glutamic Acid by Increasing the Intracellular Reactive Oxygen Species in the Bacillus licheniformis Δ1-pyrroline-5-carboxylate Dehydrogenase Gene ycgN Deficient Strain

Chen, S.; li, B.; Cai, D.; Hu, S.; Zhu, A.; He, Z.

10.1101/337402 — microbiology — Posted on 2018-06-02

2448 Anti-V2 Antibody Deficiency in Individuals Infected With HIV-1

Liu, L.; Li, L.; Nanfack, A. J.; Mayr, L. M.; Soni, S.; Kohutnicki, A.; Agyingi, L. A.; Wang, X.-H.; Tuen, M.; Shao, Y.; Totrov, M.; Zolla-Pazner, S. B.; Kong, X.-P.; Duerr, R.; Gorny, M. K.

10.1101/336339 — immunology — Posted on 2018-06-02

2449 pH-mediated inhibition of a bumble bee parasite by an intestinal symbiont

Palmer-Young, E. C.; Raffel, T. R.; McFrederick, Q. S.

10.1101/336347 — ecology — Posted on 2018-06-02

2450 Innate visual preferences and behavioral flexibility in Drosophila

Grabowska, M. J.; Steeves, J.; Alpay, J.; Van De Poll, M.; Ertekin, D.; van Swinderen, B.

10.1101/336412 — animal behavior and cognition — Posted on 2018-06-02

2451 Factors Associated with Scientific Misconduct and Questionable Research Practices in Health Professions Education

Maggio, L. A.; Dong, T.; Driessen, E. W.; Artino, A.

10.1101/332254 — scientific communication and education — Posted on 2018-06-02

2452 Cross-feeding between Bifidobacterium infantis and Anaerostipes caccae on lactose and human milk oligosaccharides

Chia, L. W.; Mank, M.; Blijenberg, B.; Bongers, R. S.; Aalvink, S.; van Limpt, K.; Wopereis, H.; Tims, S.; Stahl, B.; Belzer, C.; Knol, J.

10.1101/336362 — microbiology — Posted on 2018-06-02

2453 Biofilm formation by Mycobacterium avium ssp. paratuberculosis in aqueous extract of schmutzdecke for clarifying untreated water in water treatment operations.

Aboagye, G.; Rowe, M. T.

10.1101/336370 — microbiology — Posted on 2018-06-02

2454 Toward machine-guided design of proteins

Biswas, S.; Kuznetsov, G.; Ogden, P. J.; Conway, N. J.; Adams, R. P.; Church, G. M.

10.1101/337154 — synthetic biology — Posted on 2018-06-02

2455 The neutral frequency spectrum of linked sites

Ferretti, L.; Klassmann, A.; Raineri, E.; Ramos-Onsins, S. E.; Wiehe, T. E.; Achaz, G.

10.1101/100123 — genetics — Posted on 2018-06-01

2456 High-dimensional microbiome interactions shape host fitness

Gould, A. L.; Zhang, V.; Lamberti, L.; Jones, E. W.; Obadia, B.; Gavryushkin, A.; Korasidis, N.; Carlson, J. M.; Beerenwinkel, N.; Ludington, W. B.

10.1101/232959 — microbiology — Posted on 2018-06-01

2457 Effects of anthropogenic wildfire activity in low elevation Pacific island vegetation communities in French Polynesia

Newman, E. A.; Winkler, C. A.; Hembry, D. H.

10.1101/196352 — ecology — Posted on 2018-06-01

2458 Regulation of DVL2 ubiquitylation by USP9X biases participation in canonical or non-canonical WNT signaling

Nielsen, C. P.; Jernigan, K. K.; MacGurn, J. A.

10.1101/289595 — cell biology — Posted on 2018-06-01

2459 A novel mathematical method for disclosing oscillations ingene transcription: a comparative study

Antoulas, A. C.; Zhu, B.; Zhang, Q.; York, B.; O'Malley, B. W.; Dacso, C.

10.1101/151720 — cell biology — Posted on 2018-06-01

2460 Molecular mechanisms in fungal fatty acid synthase (FAS) assembly

Fischer, M.; Mulinacci, B.; Joppe, M.; Vollrath, R.; Konstantinidis, K.; Koetter, P.; Ciccarelli, L.; Vonck, J.; Oesterhelt, D.; Grininger, M.

10.1101/336578 — molecular biology — Posted on 2018-06-01

2461 Feature selection for the accurate prediction of septic and cardiogenic shock ICU mortality in the acute phase

Aushev, A.; Ripoll, V. R.; Vellido, A.; Aletti, F.; Pinto, B. B.; Bendjelid, K.; Herpain, A.; Post, E. H.; Medina, E. R.; Ferrer, R.; Baselli, G.

10.1101/337261 — bioinformatics — Posted on 2018-06-01

2462 Evaluation of the cytotoxic potential of extracts from the genus Passiflora cultived in Brazil against cancer cells

Amaral, R. G.; Gomes, S. V. F.; Antoniolli, A. R.; Luciano, M. C. d. S.; Pessoa, C. d. O.; Andrade, L. N.; Severino, P. N.; Brandao, G. C.; Bomfim, L. M.; Bezerra, D. P.; David, J. M.; Carvalho, A. A.

10.1101/337253 — pharmacology and toxicology — Posted on 2018-06-01

2463 Faster emergence behavior from ketamine/xylazine anesthesia with atipamezole versus yohimbine

Mees, L.; Fidler, J.; Kreuzer, M.; Fu, J.; pardue, m.; Garcia, P. S.

10.1101/337246 — neuroscience — Posted on 2018-06-01

2464 Attentional modulation of orthographic neighborhood effects during reading: Evidence from event-related brain potentials in a psychological refractory period paradigm

Rabovsky, M.; Conrad, M.; Alvarez, C. J.; Paschke-Goldt, J.; Sommer, W.

10.1101/337238 — neuroscience — Posted on 2018-06-01

2465 From head to tail: A neuromechanical model of forward locomotion in C. elegans

Izquierdo, E. J.; Beer, R. D.

10.1101/295154 — neuroscience — Posted on 2018-06-01

2466 Intellectual phenotypes in autism strongly correlate with gene dosage changes and exon targets of truncating mutations

Chiang, A. H.; Chang, J.; Vitkup, D.

10.1101/270850 — genetics — Posted on 2018-06-01

2467 Phosphatidylethanolamine made in the inner mitochondrial membrane is essential for yeast cytochrome bc1 complex function

Calzada, E.; McCaffery, J. M.; Claypool, S.

10.1101/269233 — cell biology — Posted on 2018-06-01

2468 Prediction-related neural activity during silent periods is sharply tuned

Demarchi, G.; Sanchez, G.; Weisz, N.

10.1101/266841 — neuroscience — Posted on 2018-06-01

2469 A skin pigment compound that also functions as sunglasses for birds

Zawadzka, M.; Racz, B.; Ambrosini, D.; Gorbitz, C. H.; Morth, J. P.; Lundanes, E.; Rise, F.; Ringvold, A.; Wilson, S. R.

10.1101/336644 — biochemistry — Posted on 2018-06-01

2470 Validation of Prostate Cancer Risk Variants by CRISPR/Cas9 Mediated Genome Editing

Wang, X.; Hayes, J.; Xu, D.; Gao, X.; Mehta, D.; Lilja, H.; Klein, R.

10.1101/337022 — genetics — Posted on 2018-06-01

2471 An in vivo translation-reporter system for the study of protein synthesis in zebrafish embryos

Palha, I.; Anselme, I.; Schneider-Maunoury, S.; Giudicelli, F.

10.1101/336826 — developmental biology — Posted on 2018-06-01

2472 Local Polyploidy Phenomenon in Escherichia coli and its significance in genetic engineering

Yang, F.; Guo, L.; Lyu, K.; Zhang, J.; Yang, Y.; Wang, H.; Yu, H.; Guo, D.; Ding, T.; Huang, C.; Ren, H.; Ma, X.; Yang, Y.; Huo, Y.

10.1101/335448 — microbiology — Posted on 2018-06-01

2473 Notch Controls Multiple Pancreatic Cell Fate Regulators Through Direct Hes1-mediated Repression

de Lichtenberg, K. H.; Seymour, P. A.; Jorgensen, M. C.; Kim, Y.-H.; Grapin-Botton, A.; Magnuson, M.; Nakic, N.; Ferrer, J.; Serup, P.

10.1101/336305 — developmental biology — Posted on 2018-06-01

2474 Branching developmental pathways through high dimensional single cell analysis in trajectory space

Dermadi, D.; Bscheider, M.; Bjegovic, K.; Lazarus, N. H.; Szade, A.; Hadeiba, H.; Butcher, E. C.

10.1101/336313 — bioinformatics — Posted on 2018-06-01

2475 Identification and Characterisation of the CD40-Ligand of Sigmodon hispidus

Li, X.; Russell, M.; Larocque, L.; Cao, J.; Deschambault, Y.; Varga, J.; Thulasi Raman, s. N.; muralidharan, a.

10.1101/337089 — immunology — Posted on 2018-06-01

2476 Dopamine signaling modulates the stability and integration of intrinsic brain networks

Shafiei, G.; Zeighami, Y.; Clark, C. A.; Coull, J. T.; Nagano-Saito, A.; Leyton, M.; Dagher, A.; Misic, B.

10.1101/252528 — neuroscience — Posted on 2018-06-01

2477 Interplay between coding and exonic splicing regulatory sequences

Fontrodona, N.; Aube, F.; Claude, J.-B.; Polveche, H.; Lemaire, S.; Tranchevent, L. C.; Modolo, L.; Mortreux, F.; Bourgeois, C.; Auboeuf, D.

10.1101/334839 — genomics — Posted on 2018-06-01

2478 Online parallel accumulation - serial fragmentation (PASEF) with a novel trapped ion mobility mass spectrometer

Meier, F.; Brunner, A.-D.; Koch, S.; Koch, H.; Lubeck, M.; Krause, M.; Goedecke, N.; Decker, J.; Kosinski, T.; Park, M. A.; Bache, N.; Hoerning, O.; Cox, J.; Raether, O.; Mann, M.

10.1101/336743 — systems biology — Posted on 2018-06-01

2479 Phloem structure and development in Illicium parviflorum, a basal angiosperm shrub

Losada, J. M.; Holbrook, N. M.

10.1101/326322 — physiology — Posted on 2018-06-01

2480 Attentional fluctuations induce shared variability in macaque primary visual cortex

Denfield, G. H.; Ecker, A. S.; Shinn, T. J.; Bethge, M.; Tolias, A. S.

10.1101/189282 — neuroscience — Posted on 2018-06-01

2481 High-dimensional microbiome interactions shape host fitness

Gould, A. L.; Zhang, V.; Lamberti, L.; Jones, E. W.; Obadia, B.; Gavryushkin, A.; Korasidis, N.; Carlson, J. M.; Beerenwinkel, N.; Ludington, W. B.

10.1101/232959 — microbiology — Posted on 2018-06-01

2482 Adult Plant Resistance in Maize to Northern Leaf Spot Is a Feature of Partial Loss-of-function Alleles of Hm1

Marla, S. R.; Chu, K.; Chintamanani, S.; Multani, D. S.; Klempien, A.; DeLeon, A.; Bong-suk, K.; Dunkle, L. D.; Dilkes, B. P.; Johal, G. S.

10.1101/244491 — pathology — Posted on 2018-06-01

2483 Cost of resistance: an unreasonably expensive concept

Lenormand, T.; Harmand, N.; Gallet, R.

10.1101/276675 — evolutionary biology — Posted on 2018-06-01

2484 Alevin: An integrated method for dscRNA-seq quantification

Srivastava, A.; Smith, T. S.; Sudbery, I.; Patro, R.

10.1101/335000 — bioinformatics — Posted on 2018-06-01

2485 Structure of Zip2:Spo16, a conserved XPF:ERCC1-like complex critical for meiotic crossover formation

Arora, K.; Corbett, K. D.

10.1101/258194 — biochemistry — Posted on 2018-06-01

2486 Hard decisions shape the neural coding of preferences

Voigt, K.; Murawski, C.; Speer, S.; Bode, S.

10.1101/298406 — neuroscience — Posted on 2018-06-01

2487 Genetic architecture and selective sweeps after polygenic adaptation to distant trait optima

Stetter, M. G.; Thornton, K.; Ross-Ibarra, J.

10.1101/313247 — evolutionary biology — Posted on 2018-06-01

2488 Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development

Tokuoka, Y.; Yamada, T. G.; Hiroi, N.; Kobayashi, T. J.; Yamagata, K.; Funahashi, A.

10.1101/324186 — systems biology — Posted on 2018-06-01

2489 Localization and protein-protein interaction of protein kinase CK2 suggest a chaperone-like activity is integral to its function in M. oryzae.

Zhang, L.; Zhang, D.; Chen, Y.; Ye, W.; Lin, Q.; Lu, G.; Ebbole, D. J.; Olsson, S.; Wang, Z.

10.1101/323816 — cell biology — Posted on 2018-06-01

2490 The RHIM within the M45 protein from murine cytomegalovirus forms heteromeric amyloid fibrils with RIPK1 and RIPK3

Pham, C. L. L.; Strange, M.; O' Carroll, A.; Shanmugam, N.; Sierecki, E.; Gambin, Y.; Steain, M.; Sunde, M.

10.1101/324590 — biophysics — Posted on 2018-06-01

2491 Atxn2-CAG100-knock-in affects mouse lifespan and vestibulo-cerebellar function via neural disconnection

10.1101/333443 — neuroscience — Posted on 2018-06-01

2492 Properties of cell signaling pathways and gene expression systems operating far from steady-state

Di Bella, J. P.; Colman-Lerner, A.; Ventura, A. C.

10.1101/334649 — systems biology — Posted on 2018-06-01

2493 Policy driven changes in animal research practices: mapping researchers’ attitudes towards animal-free innovations using the Netherlands as an example

Schoustra, S.; Bressers, S.; van den Elzen, H.; Gräwe, C.; van den Oetelaar, D.; Postma, P.

10.1101/337063 — scientific communication and education — Posted on 2018-06-01

2494 Characterization of Oral Tactile Sensitivity and Chewing Efficiency Across Adulthood

Shupe, G. E.; Resmondo, Z. N.; Luckett, C. R.

10.1101/333674 — physiology — Posted on 2018-06-01

2495 Establishment of epithelial and fibroblast cell lines from primary renal cancer nephrectomies

Yap, N. Y.; Ong, T. A.; Morais, C.; Pailoor, J.; Gobe, G. C.; Rajandram, R.

10.1101/337055 — cancer biology — Posted on 2018-06-01

2496 Identification of key genes related to dexamethasone-resistance in acute lymphoblastic leukemia

Yu, L.; Chen, Q.; Chen, S.; Shi, Y.; Tao, S.; Chen, W.; Wang, C.

10.1101/337048 — bioinformatics — Posted on 2018-06-01

2497 Cell shape independent FtsZ dynamics in synthetically remodeled cells

Söderström, B.; Badrutdinov, A.; Chan, H.; Skoglund, U.

10.1101/335356 — microbiology — Posted on 2018-06-01

2498 Nothing else matters? A nationwide study of microhabitats drivers at the tree scale

Paillet, Y.; Debaive, N.; Archaux, F.; Boulanger, V.; Gilg, O.; Guilbert, E.

10.1101/335836 — ecology — Posted on 2018-06-01

2499 A quasi-integral controller for adaptation of genetic modules to variable ribosome demand

Huang, H.-H.; Qian, Y.; Del Vecchio, D.

10.1101/336271 — synthetic biology — Posted on 2018-06-01

2500 Insights into the evolution of oxygenic photosynthesis from a phylogenetically novel, low-light cyanobacterium

Grettenberger, C. L.; Sumner, D.; Wall, K.; Brown, C. T.; Eisen, J.; Mackey, T.; Hawes, I.; Jungblut, A.

10.1101/334458 — microbiology — Posted on 2018-06-01

2501 TGFβ blocks STING-induced IFNα/ β release and tumor rejection in spontaneous mammary tumors

Guerin, M. V.; Regnier, F.; Feuillet, V.; Vimeux, L.; Weiss, J. M.; Guilbert, T.; Thoreau, M.; Renault, G.; Finisguerra, V.; Donnadieu, E.; Trautmann, A.; Bercovici, N.

10.1101/336990 — cancer biology — Posted on 2018-06-01

2502 Pericarp Pigmentation in ‘Red Delicious’ and Its Four Generation Mutants Correlates with Hormones

Li, W.-F.; Mao, J.; Yang, S.-J.; Guo, Z.-G.; Ma, Z.-H.; Dawuda, M. M.; Zuo, C.-W.; Chu, M.-Y.; Chen, B.-H.

10.1101/336263 — bioinformatics — Posted on 2018-06-01

2503 Distinct types of short open reading frames are translated in plant cells

Fesenko, I.; Kirov, I.; Kniazev, A.; Khazigaleeva, R.; Lazarev, V.; Kharlampieva, D.; Grafskaia, E.; Zgoda, V.; Butenko, I.; Arapidi, G.; Mamaeva, A.; Ivanov, V.; Govorun, V.

10.1101/213736 — plant biology — Posted on 2018-06-01

2504 A distributed algorithm to maintain and repair the trail networks of arboreal ants

Chandrasekhar, A.; Gordon, D. M.; Navlakha, S.

10.1101/194480 — bioinformatics — Posted on 2018-06-01

2505 Profiling of bacterial and fungal microbial communities in cystic fibrosis sputum using RNA

Grahl, N.; Dolben, E. L.; Filkins, L. M.; Crocker, A. W.; Willger, S. D.; Morrison, H. G.; Sogin, M. L.; Ashare, A.; Gifford, A. H.; Jacobs, N. J.; Schwartzman, J. D.; Hogan, D. A.