bioRxiv directory

William Meurer;Nicholas J Seewald;Kelley Kidwell;

10.1101/035683 — Scientific Communication and Education — Posted on 2015-12-30

3 Estimating cell cycle model parameters using systems identification

Edwin Francisco Juarez Rosales;Ahmadreza Ghaffarizadeh;Samuel H Friedman;Edmond Jonckheere;Paul Macklin;

10.1101/035766 — Cancer Biology — Posted on 2015-12-31

4 MyGene.info and MyVariant.info: Gene and Variant Annotation Query Services

Jiwen Xin;Adam Mark;Cyrus Afrasiabi;Ginger Tsueng;Moritz Juchler;Nikhil Gopal;Gregory Stupp;Timothy Putman;Benjamin Ainscough;Obi Griffith;Ali Torkamani;Patricia Whetzel;Christopher J Mungall;Sean Mooney;Andrew I Su;Chunlei Wu;

10.1101/035667 — Bioinformatics — Posted on 2015-12-30

5 Agent-based simulation of large tumors in 3-D microenvironments

Ahmadreza Ghaffarizadeh;Samuel H Friedman;Paul Macklin;

10.1101/035733 — Cancer Biology — Posted on 2015-12-30

6 Simulating multi-substrate diffusive transport in 3-D tissues with BioFVM

Samuel H Friedman;Ahmadreza Ghaffarizadeh;Paul Macklin;

10.1101/035709 — Cancer Biology — Posted on 2015-12-30

7 A regression framework for the proportion of true null hypotheses

Simina M Boca;Jeffrey T. Leek;

10.1101/035675 — Bioinformatics — Posted on 2015-12-30

8 Establishing evidenced-based best practice for the de novo assembly and evaluation of transcriptomes from non-model organisms

Matthew D MacManes;

10.1101/035642 — Bioinformatics — Posted on 2015-12-30

9 Incoherent feedforward motifs as immune change detectors

Eduardo Sontag;

10.1101/035600 — Systems Biology — Posted on 2015-12-30

10 Constricted cell migration causes nuclear lamina damage, DNA breaks, and squeeze-out of repair factors

Jerome Irianto;Charlotte R Pfeifer;Yuntao Xia;Avathamsa Athirasala;Irena L Ivanovska;Roger E Greenberg;Dennis E Discher;

10.1101/035626 — Cell Biology — Posted on 2015-12-30

11 Nodes in the alpine connectome. Exploring the linkages between riparian ecosystem and geo-climatic elements across the mountain environment

Dragos G Zaharescu;Antonio Palanca-Soler;Peter S Hooda;Catalin Tanase;Carmen I Burghelea;Richard N Lester;

10.1101/035576 — Ecology — Posted on 2015-12-29

12 ŌvSim: a Simulation of the Population Dynamics of Mammalian Ovarian Follicles

Joshua Johnson;Xin Chen;Xiao Xu;John Emerson;

10.1101/034249 — Physiology — Posted on 2015-12-30

13 ŌvSim: a Simulation of the Population Dynamics of Mammalian Ovarian Follicles

Joshua Johnson;Xin Chen;Xiao Xu;John Emerson;

10.1101/034249 — Physiology — Posted on 2015-12-29

14 ŌvSim: a Simulation of the Population Dynamics of Mammalian Ovarian Follicles

Joshua Johnson;Xin Chen;Xiao Xu;John Emerson;

10.1101/034249 — Physiology — Posted on 2015-12-29

15 Diversity of Pico- to Mesoplankton Along the 2000 km Salinity Gradient of the Baltic Sea

Yue OO Hu;Bengt Karlson;Sophie Charvet;Anders F Andersson;

10.1101/035485 — Microbiology — Posted on 2015-12-29

16 scDD: A statistical approach for identifying differential distributions in single-cell RNA-seq experiments

Keegan D. Korthauer;Li-Fang Chu;Michael A. Newton;Yuan Li;James Thomson;Ron Stewart;Christina Kendziorski;

10.1101/035501 — Genomics — Posted on 2015-12-29

17 Post-embryonic hourglass patterns mark ontogenetic transitions in plant development

Hajk-Georg Drost;Julia Bellstaedt;Diarmuid O'Maoileidigh;Anderson Silva;Alexander Gabel;Claus Weinholdt;Patrick Ryan;Bas Dekkers;Leonie Bentsink;Henk Hilhorst;Wilco Ligterink;Frank Wellmer;Ivo Grosse;Marcel Quint;

10.1101/035527 — Plant Biology — Posted on 2015-12-29

18 Hilbert-Schmidt and Sobol sensitivity indices for static and time series Wnt signaling measurements in colorectal cancer - Part A

shriprakash sinha;

10.1101/035519 — Systems Biology — Posted on 2015-12-28

19 Learning in cortical networks through error back-propagation

James Whittington;Rafal Bogacz;

10.1101/035451 — Neuroscience — Posted on 2015-12-28

20 The impact of amplification on differential expression analyses by RNA-seq

Swati Parekh;Christoph Ziegenhain;Beate Vieth;Wolfgang Enard;Ines Hellmann;

10.1101/035493 — Genomics — Posted on 2015-12-28

21 Chicken rRNA gene cluster structure

Alexander Demin;Elena Koshel;Alsu Saifitdinova;Svetlana Galkina;Tatsuo Fukagawa;Elena Gaginskaya;

10.1101/035477 — Genomics — Posted on 2015-12-28

22 Genomic DNA preparation enabling multiple replicate reads for accurate nanopore sequencing

Dimitra Tsavachidou;

10.1101/035436 — Genomics — Posted on 2015-12-28

23 MPRAnator: a web-based tool for the design of Massively Parallel Reporter Assay experiments.

Ilias Georgakopoulos-Soares;Naman Jain;Jesse Gray;Martin Hemberg;

10.1101/035444 — Bioinformatics — Posted on 2015-12-28

24 New records of Atlantic humpback dolphin in Guinea, Nigeria, Cameroon and Togo underscore fisheries pressure and generalised marine bushmeat demand

Koen Van Waerebeek;Michael Uwagbae;Gabriel Segniagbeto;Idrissa L. Bamy;Isidore Ayissi;

10.1101/035337 — Zoology — Posted on 2015-12-27

25 solarius: an R interface to SOLAR for variance component analysis in pedigrees

Andrey Ziyatdinov;Helena Brunel;Angel Martinez-Perez;Alfonso Buil;Alexandre Perera;Jose Manuel Soria;

10.1101/035378 — Bioinformatics — Posted on 2015-12-25

26 Gene body H2B monoubiquitylation regulates gene-selective RNA Polymerase II pause release and is not rate limiting for transcription elongation

Gilad Fuchs;Eran Rosenthal;Debora-Rosa Bublik;Tommy Kaplan;Moshe Oren;

10.1101/035386 — Genomics — Posted on 2015-12-25

27 A Critical Review on the Use of Support Values in Tree Viewers and Bioinformatics Toolkits

Lucas Czech;Jaime Huerta-Cepas;Alexandros Stamatakis;

10.1101/035360 — Evolutionary Biology — Posted on 2015-12-31

28 A Critical Review on the Use of Support Values in Tree Viewers and Bioinformatics Toolkits

Lucas Czech;Jaime Huerta-Cepas;Alexandros Stamatakis;

10.1101/035360 — Evolutionary Biology — Posted on 2015-12-25

29 Biological screens from linear codes: theory and tools

Yaniv Erlich;Anna Gilbert;Hung Ngo;Atri Rudra;Nicolas Thierry-Mieg;Mary Wootters;Dina Zielinski;Or Zuk;

10.1101/035352 — Bioinformatics — Posted on 2015-12-25

30 Integration of mobile sequencers in an academic classroom

Sophie Zaaijer;Yaniv Erlich;

10.1101/035303 — Genomics — Posted on 2015-12-24

31 GWIS: Genome Wide Inferred Statistics for non-linear functions of multiple phenotypes

Harold Nieuwboer;Rene Pool;Conor V Dolan;Dorret I Boomsma;Michel G Nivard;

10.1101/035329 — Genetics — Posted on 2015-12-24

32 A mechanistic first-passage time framework for bacterial cell-division timing

Khem Raj Ghusinga;Cesar Augusto Vargas-Garcia;Abhyudai Singh;

10.1101/035345 — Systems Biology — Posted on 2015-12-24

33 The Fisher-Wright model with deterministic seed bank and selection

Bendix Koopmann;Johannes Mueller;Aurelien Tellier;Daniel Zivkovic;

10.1101/035246 — Evolutionary Biology — Posted on 2015-12-24

34 Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce

Abhinav Nellore;Christopher Wilks;Kasper D Hansen;Jeffrey T Leek;Ben Langmead;

10.1101/035287 — Bioinformatics — Posted on 2015-12-24

35 High-throughput pipeline for de-novo assembly and drug resistance mutations identification from Next-Generation Sequencing viral data of residual diagnostic samples

Tiziano Gallo Cassarino;Dan Frampton;Robert Sugar;Elijah Charles;Zisis Kozlakidis;Paul Kellam;

10.1101/035154 — Bioinformatics — Posted on 2015-12-24

36 Bibliometric and Geographical Analysis of Cell Death Related Literature

Vijaykumar Yogesh Muley;Anne Hahn;Pravin Paikrao;

10.1101/035204 — Bioinformatics — Posted on 2015-12-24

37 Reactivation of reward-related patterns from single past episodes supports memory-based decision making

G. Elliott Wimmer;Christian Buechel;

10.1101/035196 — Neuroscience — Posted on 2015-12-29

38 Reactivation of reward-related patterns from single past episodes supports memory-based decision making

G. Elliott Wimmer;Christian Buechel;

10.1101/035196 — Neuroscience — Posted on 2015-12-24

39 Pain to remember: a single incidental association with pain leads to increased memory for neutral items one year later

G. Elliott Wimmer;Christian Buechel;

10.1101/035212 — Neuroscience — Posted on 2015-12-24

40 Interactive Analytics for Very Large Scale Genomic Data

Cuiping Pan;Nicole Deflaux;Gregory McInnes;Michael Snyder;Jonathan Bingham;Somalee Datta;Philip Tsao;

10.1101/035295 — — Posted on 2015-12-24

41 Initiator tRNA Genes Template the 3′ CCA End at High Frequencies in Bacteria

David H. Ardell;Ya-Ming Hou;

10.1101/035220 — Genomics — Posted on 2015-12-24

42 A mechanistic model of linkage analysis in allohexaploids

Huan Li;Xuli Zhu;Ke Mao;Rongling Wu;Qin Yan;

10.1101/035139 — Genetics — Posted on 2015-12-24

43 Recombination Disequilibrium in Ideal and Natural Populations

Yuan-De Tan;

10.1101/035121 — Genetics — Posted on 2015-12-24

44 De novo identification, differential analysis and functional annotation of SNPs from RNA-seq data in non-model species

Helene Lopez Maestre;Lilia Brinza;Camille Marchet;Janice Kielbassa;Sylvere Bastien;Mathilde Boutigny;David Monnin;Adil El Filali;Claudia Marcia Carareto;Cristina Vieira;Franck Picard;Natacha Kremer;Fabrice Vavre;Marie-France Sagot;Vincent Lacroix;

10.1101/035238 — Bioinformatics — Posted on 2015-12-24

45 Cancer cells have distinct electrical properties that predict a susceptibility to lipophilic anions; a new cancer drug paradigm

Michael David Forrest;

10.1101/035113 — Cancer Biology — Posted on 2015-12-24

46 High-accuracy HLA type inference from whole-genome sequencing data

Alexander Dilthey;Pierre-Antoine Gourraud;Zamin Iqbal;Gil McVean;

10.1101/035253 — Bioinformatics — Posted on 2015-12-24

47 Nested metabarcode tagging: a robust tool for studying species interactions in ecology and evolution

James John Neil Kitson;Christoph Hahn;Richard J Sands;Nigel A Straw;Darren M Evans;David H Lunt;

10.1101/035071 — Ecology — Posted on 2015-12-23

48 Hybrid Systems Modeling for (Cancer) Systems Biology

Roel I.J. Dobbe;Claire J. Tomlin;

10.1101/035022 — Systems Biology — Posted on 2015-12-23

49 Arabidopsis late blight: Infection of a nonhost plant by Albugo laibachii enables full colonization by Phytophthora infestans

Khaoula Belhaj;Liliana M. Cano;David C. Prince;Ariane Kemen;Kentaro Yoshida;Yasin F. Dagdas;Graham J. Etherington;Henk-jan Schoonbeek;H. Peter van Esse;Jonathan DG Jones;Sophien Kamoun;Sebastian Schornack;

10.1101/035006 — Plant Biology — Posted on 2015-12-23

50 State aggregation for fast likelihood computations in molecular evolution

Iakov I Davydov;Marc Robinson-Rechavi;Nicolas Salamin;

10.1101/035063 — Bioinformatics — Posted on 2015-12-24

51 State aggregation for fast likelihood computations in molecular evolution

Iakov I Davydov;Marc Robinson-Rechavi;Nicolas Salamin;

10.1101/035063 — Bioinformatics — Posted on 2015-12-23

52 Agent-based modeling of cancer stem cell driven solid tumor growth

Jan T Poleszczuk;Paul Macklin;Heiko Enderling;

10.1101/035162 — Systems Biology — Posted on 2015-12-23

53 A reference panel of 64,976 haplotypes for genotype imputation

Shane McCarthy;Sayantan Das;Warren Kretzschmar;Richard Durbin;Goncalo Abecasis;Jonathan Marchini;

10.1101/035170 — Genetics — Posted on 2015-12-23

54 A protein truncating R179X variant in RNF186 confers protection against ulcerative colitis

Manuel A Rivas;Daniel Graham;Patrick Sulem;Christine Stevens;Nicole Desch;Philippe Goyette;Daniel Gudbjartsson;Ingileif Jonsdottir;Unnur Thorsteinsdottir;Frauke Degenhardt;Soren Mucha;Mitja I Kurki;Dalin Li;Mauro D'Amato;Vito Annese;Severine Vermeire;Rinse Weersma;Jonas Halfvarsson;Paulina Paavola-Sakki;Maarit Lappalainen;Monkol Lek;Beryl Cummings;Taru Tukianen;Talin Haritunians;Leena Halme;Lotta Koskinen;Ashwin Ananthakrishnan;Yang Luo;Graham A Heap;Marijn Visschedijk;NIDDK IBD Genetics Consortium;UK IBD Genetics Consortium;Daniel G MacArthur;Benjamin M Neale;Tariq Ahmad;Carl A Anderson;Steve

10.1101/035105 — Genetics — Posted on 2015-12-23

55 Tunable protein synthesis by transcript isoforms in human cells

Stephen N Floor;Jennifer A Doudna;

10.1101/035188 — Systems Biology — Posted on 2015-12-23

56 Exploiting variability of single cells to uncover the in vivo hierarchy of miRNA targets

Andrzej Jerzy Rzepiela;Arnau Vina-Vilaseca;Jeremie Breda;Souvik Ghosh;Afzal P Syed;Andreas J Gruber;William A Grandy;Katja Eschbach;Christian Beisel;Erik van Nimwegen;Mihaela Zavolan;

10.1101/035097 — Systems Biology — Posted on 2015-12-23

57 On Miller’s rule for the brain working memory, or why human memory is so short

Evgeny Z Meilikhov;Rimma M Farzetdinova;

10.1101/035014 — Systems Biology — Posted on 2015-12-22

58 Transition between functional regimes in an integrate-and-fire network model of the thalamus

Alessandro Barardi;Jordi Garcia-Ojalvo;Alberto Mazzoni;

10.1101/034918 — Neuroscience — Posted on 2015-12-20

59 Genomic Bayesian Prediction Model for Count Data with Genotype × Environment Interaction

Abelardo Montesinos-Lopez;Osval Montesinos-Lopez;Jose Crossa;Juan Burgueno;Kent Eskridge;Esteban Falconi-Castillo;Xingyao He;Pawan Singh;Karen Cichy;

10.1101/034967 — Genomics — Posted on 2015-12-20

60 MeSH-informed enrichment analysis and MeSH-guided semantic similarity among functional terms and gene products in chicken

Gota Morota;Timothy Mathes Beissinger;Francisco Peñagaricano;

10.1101/034975 — Genetics — Posted on 2015-12-26

61 MeSH-informed enrichment analysis and MeSH-guided semantic similarity among functional terms and gene products in chicken

Gota Morota;Timothy Mathes Beissinger;Francisco Peñagaricano;

10.1101/034975 — Genetics — Posted on 2015-12-20

62 Microbial contributions to subterranean methane sinks

Jay T Lennon;D Nguyen-Thuy;N Pham Duc;A Drobniak;P Ta Hoa;T Pham;T Streil;Kevin Webster;Arndt Schimmelmann;

10.1101/034801 — Ecology — Posted on 2015-12-20

63 The genomic basis of electrotaxis in Dictyostelium discoideum: Electric field sensitive amino acids are dynamically encoded en masse for the streaming-stage proteome

Albert J Erives;

10.1101/034892 — Biophysics — Posted on 2015-12-20

64 MBPpred: Proteome-wide detection of membrane lipid-binding proteins using profile Hidden Markov Models

Katerina C Nastou;Georgios N Tsaousis;Nikolaos C Papandreou;Stavros J Hamodrakas;

10.1101/034942 — Bioinformatics — Posted on 2015-12-20

65 Practical Guidelines for Secure Cloud Computing using Genomic Data

Somalee Datta;Keith Bettinger;Michael Snyder;

10.1101/034876 — Bioinformatics — Posted on 2015-12-20

66 DanQ: a hybrid convolutional and recurrent deep neural network for quantifying the function of DNA sequences

Daniel Quang;Xiaohui Xie;

10.1101/032821 — Genomics — Posted on 2015-12-20

67 Characterisation of CASPR2 deficiency disorder - a syndrome involving autism, epilepsy and language impairment

Pedro Rodenas-Cuadrado;Nicola Pietrafusa;Teresa Francavilla;Angela La Neve;Pasquale Striano;Sonja Vernes;

10.1101/034363 — Genetics — Posted on 2015-12-20

68 Refining the Y chromosome phylogeny with southern African sequences

Chiara Barbieri;Alexander Hübner;Enrico Macholdt;Shengyu Ni;Sebastian Lippold;Roland Schröder;Sununguko Wata Mpoloka;Josephine Purps;Lutz Roewer;Mark Stoneking;Brigitte Pakendorf;

10.1101/034983 — Evolutionary Biology — Posted on 2015-12-20

69 Whole-genome sequencing uncovers cryptic and hybrid species among Atlantic and Pacific cod-fish

Katrín Halldórsdóttir;Einar Árnason;

10.1101/034926 — — Posted on 2015-12-20

70 Retroviruses integrate into a shared, non-palindromic motif

Paul D. W. Kirk;Maxime Huvet;Anat Melamed;Goedele N. Maertens;Charles R. M. Bangham;

10.1101/034991 — Microbiology — Posted on 2015-12-20

71 Host-pathogen coevolution and the emergence of broadly neutralizing antibodies in chronic infections

Armita Nourmohammad;Jakub Otwinowski;Joshua B Plotkin;

10.1101/034959 — Evolutionary Biology — Posted on 2015-12-20

72 Purifying selection and drift, not life history or RNAi, determine transposable element evolution

Amir Szitenberg;Soyeon Cha;Charles H Opperman;David M Bird;Mark Blaxter;David H Lunt;

10.1101/034884 — Evolutionary Biology — Posted on 2015-12-20

73 Estimation of the lag time in a subsequent monomer addition model for fibril elongation

Suzanne K. Shoffner;Santiago Schnell;

10.1101/034900 — Biochemistry — Posted on 2015-12-20

74 Octopamine release impairs courtship conditioning in Drosophila melanogaster

Julia Chartove;Mengxi Cici Zhang;Edward Zhang;

10.1101/034827 — Neuroscience — Posted on 2015-12-18

75 Hippocampal circuit abnormalities in MeCP2+/- mouse model of Rett syndrome

Julia Chartove;Wenlin Liao;Aniqa Hassan;Mary McMullen;Rachel White;Sangwon Kim;Gregory Carlson;

10.1101/034835 — Neuroscience — Posted on 2015-12-18

76 Ancestral genome reconstruction reveals the history of ecological diversification in Agrobacterium.

Florent Lassalle;Remi Planel;Simon Penel;David Chapulliot;Valerie Barbe;Audrey Dubost;Alexandra Calteau;David Vallenet;Damien Mornico;Laurent Gueguen;Ludovic Vial;Daniel Muller;Vincent Daubin;Xavier Nesme;

10.1101/034843 — Evolutionary Biology — Posted on 2015-12-18

77 Insect Wing Classification of Mosquitoes and Bees Using CO1 Image Recognition.

Nayna Vyas-Patel;Sai Ravela;Agenor Mafra-Neto;John D Mumford;

10.1101/034819 — Ecology — Posted on 2015-12-23

78 Insect Wing Classification of Mosquitoes and Bees Using CO1 Image Recognition.

Nayna Vyas-Patel;Sai Ravela;Agenor Mafra-Neto;John D Mumford;

10.1101/034819 — Ecology — Posted on 2015-12-20

79 Insect Wing Classification of Mosquitoes and Bees Using CO1 Image Recognition.

Nayna Vyas-Patel;Sai Ravela;Agenor Mafra-Neto;John D Mumford;

10.1101/034819 — Ecology — Posted on 2015-12-18

80 Meta3C analysis of a mouse gut microbiome

Martial Marbouty;Lyam Baudry;Axel Cournac;Romain Koszul;

10.1101/034793 — Genomics — Posted on 2015-12-17

81 A novel enrichment strategy reveals unprecedented number of novel transcription start sites at single base resolution in a model prokaryote and the gut microbiome

Laurence Ettwiller;John Buswell;Erbay Yigit;Ira Schildkraut;

10.1101/034785 — Genomics — Posted on 2015-12-17

82 SPECtre: a spectral coherence-based classifier of actively translated transcripts from ribosome profiling sequence data

Sang Y Chun;Caitlin M Rodriguez;Peter K Todd;Ryan E. Mills;

10.1101/034777 — Bioinformatics — Posted on 2015-12-17

83 BrowseVCF: a web-based application and workflow to quickly prioritise disease-causative variants in VCF files.

Silvia Salatino;Varun Ramraj;

10.1101/034769 — Bioinformatics — Posted on 2015-12-17

84 Inferring protein-protein interaction networks from inter-protein sequence co-evolution

Christoph Feinauer;Hendrik Szurmant;Martin Weigt;Andrea Pagnani;

10.1101/034744 — Bioinformatics — Posted on 2015-12-17

85 Neural oscillations as a signature of efficient coding in the presence of synaptic delays

Matthew Chalk;Boris Gutkin;Sophie Deneve;

10.1101/034736 — Neuroscience — Posted on 2015-12-17

86 Changing planetary rotation rescues the biological clock mutant lhy cca1 of Arabidopsis thaliana

Andrew J. Millar;Jamie T. Carrington;Wei Ven Tee;Sarah K. Hodge;

10.1101/034629 — Genetics — Posted on 2015-12-17

87 A Model of Avian Genome Evolution

Liaofu Luo;

10.1101/034710 — Evolutionary Biology — Posted on 2015-12-17

88 The Arabidopsis Auxin F-box proteins AFB4 and AFB5 are Required for Response to the Synthetic Auxin Picloram

Michael J Prigge;Kathleen Greenham;Yi Zhang;Aaron Santner;Cristina Castillejo;Ronan C O'Malley;Joseph R Ecker;Mark Estelle;

10.1101/034652 — Plant Biology — Posted on 2015-12-18

89 The Arabidopsis Auxin F-box proteins AFB4 and AFB5 are Required for Response to the Synthetic Auxin Picloram

Michael J Prigge;Kathleen Greenham;Yi Zhang;Aaron Santner;Cristina Castillejo;Ronan C O'Malley;Joseph R Ecker;Mark Estelle;

10.1101/034652 — Plant Biology — Posted on 2015-12-17

90 COGNITIVE ENDOPHENOTYPES OF MODERN AND EXTINCT HOMININS ASSOCIATED WITH NTNG GENE PARALOGS

Pavel Prosselkov;Ryota Hashimoto;Denis Polygalov;Ohi Kazutaka;Qi Zhang;Thomas J. McHugh;Masatoshi Takeda;Shigeyoshi Itohara;

10.1101/034413 — Genomics — Posted on 2015-12-25

91 COGNITIVE ENDOPHENOTYPES OF MODERN AND EXTINCT HOMININS ASSOCIATED WITH NTNG GENE PARALOGS

Pavel Prosselkov;Ryota Hashimoto;Denis Polygalov;Ohi Kazutaka;Qi Zhang;Thomas J. McHugh;Masatoshi Takeda;Shigeyoshi Itohara;

10.1101/034413 — Genomics — Posted on 2015-12-24

92 COGNITIVE ENDOPHENOTYPES OF MODERN AND EXTINCT HOMININS ASSOCIATED WITH NTNG GENE PARALOGS

Pavel Prosselkov;Ryota Hashimoto;Denis Polygalov;Ohi Kazutaka;Qi Zhang;Thomas J. McHugh;Masatoshi Takeda;Shigeyoshi Itohara;

10.1101/034413 — Genomics — Posted on 2015-12-17

93 COGNITIVE DOMAINS FUNCTION COMPLEMENTATION BY NTNG GENE PARALOGS

Pavel Prosselkov;Denis Polygalov;Qi Zhang;Thomas J. McHugh;Shigeyoshi Itohara;

10.1101/034645 — Genomics — Posted on 2015-12-25

94 COGNITIVE DOMAINS FUNCTION COMPLEMENTATION BY NTNG GENE PARALOGS

Pavel Prosselkov;Denis Polygalov;Qi Zhang;Thomas J. McHugh;Shigeyoshi Itohara;

10.1101/034645 — Genomics — Posted on 2015-12-24

95 COGNITIVE DOMAINS FUNCTION COMPLEMENTATION BY NTNG GENE PARALOGS

Pavel Prosselkov;Denis Polygalov;Qi Zhang;Thomas J. McHugh;Shigeyoshi Itohara;

10.1101/034645 — Genomics — Posted on 2015-12-17

96 The KIAA0319 Gene Polymorphisms are Associated with Developmental Dyslexia in Chinese Uyghur Children

Hua Zhao;Xiang Peng Zuo;Ping Bao Zhang;Yun Chen;

10.1101/034660 — Genetics — Posted on 2015-12-17

97 MicroScope: ChIP-seq and RNA-seq software analysis suite for gene expression heatmaps

Bohdan B Khomtchouk;James Hennessy;Claes Wahlestedt;

10.1101/034694 — Bioinformatics — Posted on 2015-12-28

98 MicroScope: ChIP-seq and RNA-seq software analysis suite for gene expression heatmaps

Bohdan B Khomtchouk;James Hennessy;Claes Wahlestedt;

10.1101/034694 — Bioinformatics — Posted on 2015-12-17

99 What kind of maternal effects are selected for in fluctuating environments?

Stephen R Proulx;Henrique Teotonio;

10.1101/034546 — Evolutionary Biology — Posted on 2015-12-16

100 Small lakes in big landscape: External drivers of littoral ecosystem in high elevation lakes

Dragos G Zaharescu;Carmen I Burghelea;Peter S Hooda;Richard N Lester;Antonio Palanca-Soler;

10.1101/034553 — Ecology — Posted on 2015-12-16

101 The Brain Imaging Data Structure: a standard for organizing and describing outputs of neuroimaging experiments

Krzysztof Jacek Gorgolewski;Tibor Auer;Vince D. Calhoun;R. Cameron Craddock;Samir Das;Eugene P. Duff;Guillaume Flandin;Satrajit S. Ghosh;Tristan Glatard;Yaroslav O. Halchenko;Daniel A. Handwerker;Michael Hanke;David Keator;Xiangrui Li;Zachary Michael;Camille Maumet;B. Nolan Nichols;Thomas E. Nichols;John Pellman;Jean-Baptiste Poline;Ariel Rokem;Gunnar Schaefer;Vanessa Sochat;William Triplett;Jessica A. Turner;Gaël Varoquaux;Russell A. Poldrack;

10.1101/034561 — Neuroscience — Posted on 2015-12-16

102 On the relation between face and object recognition in developmental prosopagnosia: Systematic association but no dissociation.

Christian Gerlach;Solja K. Klargaard;Randi Starrfelt;

10.1101/034520 — Neuroscience — Posted on 2015-12-16

103 Molecular organization of CA1 interneuron classes

Kenneth Harris;Lorenza Magno;Linda Katona;Peter Lönnerberg;Ana B. Muñoz Manchado;Peter Somogyi;Nicoletta Kessaris;Sten Linnarsson;Jens Hjerling-Leffler;

10.1101/034595 — Neuroscience — Posted on 2015-12-16

104 Diversity in Clinical and Biomedical Research: A Promise Yet to Be Fulfilled

Sam S Oh;Joshua Galanter;Neeta Thakur;Maria Pino-Yanes;Nicolas E Barcelo;Marquitta J White;Danille M de Bruin;Ruth M Greenblatt;Kirsten Bibbins-Domingo;Alan H.B. Wu;Luisa N Borrell;Chris Gunter;Neil R Powe;Esteban G Burchard;

10.1101/034538 — Genetics — Posted on 2015-12-16

105 Polygenic risk for schizophrenia is associated with social cognition across development

Laura Germine;Elise B Robinson;Jordan W Smoller;Monica E Calkins;Tyler M Moore;Hakon Hakonarson;Mark J Daly;Phil H Lee;Avram J Holmes;Randy L Buckner;Ruben C Gur;Raquel E Gur;

10.1101/034512 — Genetics — Posted on 2015-12-16

106 Automatic genome segmentation with HMM-ANN hybrid models

Li Shen;

10.1101/034579 — Bioinformatics — Posted on 2015-12-16

107 An evolutionary hourglass of herbivore-induced transcriptomic responses in Nicotiana attenuata

Matthew Durrant;Justin Boyer;Ian T. Baldwin;Shuqing Xu;

10.1101/034603 — Evolutionary Biology — Posted on 2015-12-16

108 Mating-induced Male Death and Pheromone Toxin-regulated Androstasis

Cheng Shi;Alexi M Runnels;Coleen T Murphy;

10.1101/034181 — Genetics — Posted on 2015-12-15

109 Evidence of adoption, monozygotic twinning, and low inbreeding rates in a large genetic pedigree of polar bears

René M. Malenfant;David W. Coltman;Evan S. Richardson;Nicholas J. Lunn;Ian Stirling;Elizabeth Adamowicz;Corey S. Davis;

10.1101/034009 — Zoology — Posted on 2015-12-15

110 Emergent Patterns from Probabilistic Generalisations of Lateral Activation and Inhibition

Lisa Willis;Alexandre Kabla;

10.1101/033951 — Systems Biology — Posted on 2015-12-15

111 Characterizing the Adult and Larval Transcriptome of the Multicolored Asian Lady Beetle, Harmonia axyridis

Lindsay A Havens;Matthew D MacManes;

10.1101/034462 — Genomics — Posted on 2015-12-15

112 A Multiscale Framework for Deconstructing the Ecosystem Physical Template of High-Altitudes Lakes

Dragos G Zaharescu;Peter S Hooda;Carmen I Burghelea;Antonio Palanca-Soler;

10.1101/034405 — Ecology — Posted on 2015-12-15

113 Event Extraction from Biomedical Literature

Abdur Rahman M.A. Basher;Alexander S. Purdy;Inanc Birol;

10.1101/034397 — Bioinformatics — Posted on 2015-12-15

114 Architecting a distributed bioinformatics platform with iRODS and iPlant Agave API

Liya Wang;Peter Van Buren;Doreen Ware;

10.1101/034488 — Bioinformatics — Posted on 2015-12-15

115 Unsupervised data-driven stratification of mentalizing heterogeneity in autism

Michael V. Lombardo;Meng-Chuan Lai;Bonnie Auyeung;Rosemary J. Holt;Carrie Allison;Paula Smith;Bhismadev Chakrabarti;Amber N. V. Ruigrok;John Suckling;Edward T. Bullmore;MRC AIMS Consortium;Christine Ecker;Michael C. Craig;Declan G. M. Murphy;Francesca Happe;Simon Baron-Cohen;

10.1101/034454 — Animal Behavior and Cognition — Posted on 2015-12-23

116 Unsupervised data-driven stratification of mentalizing heterogeneity in autism

10.1101/034454 — Animal Behavior and Cognition — Posted on 2015-12-16

117 Unsupervised data-driven stratification of mentalizing heterogeneity in autism

10.1101/034454 — Animal Behavior and Cognition — Posted on 2015-12-15

118 Ewing sarcoma breakpoint region 1 prevents transcription-associated genome instability

Nitish Mittal;Christophe Kunz;Foivos Gypas;Shivendra Kishore;Georges Martin;Friedel Wenzel;Erik van Nimwegen;Primo Schaer;Mihaela Zavolan;

10.1101/034215 — Systems Biology — Posted on 2015-12-15

119 Simple penalties on maximum likelihood estimates of genetic parameters to reduce sampling variation

karin meyer;

10.1101/034447 — Genetics — Posted on 2015-12-15

120 Independent evolution of ab- and adaxial stomatal density enables adaptation

Christopher David Muir;Miquel Àngel Conesa;Jeroni Galmés;

10.1101/034355 — Evolutionary Biology — Posted on 2015-12-15

121 The Drosophila Neurogenin, Tap, controls axonal growth through the Wnt adaptor protein Dishevelled

Liqun Yuan;Shu Hu;Zeynep Okray;Xi Ren;Natalie De Geest;Annelies Claeys;Jiekun Yan;Eric Bellefroid;Bassem Hassan;Xiao-Jiang Quan;

10.1101/034439 — Developmental Biology — Posted on 2015-12-15

122 Gene expression inference with deep learning

Yifei Chen;Yi Li;Rajiv Narayan;Aravind Subramanian;Xiaohui Xie;

10.1101/034421 — Bioinformatics — Posted on 2015-12-15

123 Characterizing RNA structures in vitro and in vivo with selective 2’-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

Kyle E Watters;Angela M Yu;Eric J Strobel;Alex H Settle;Julius Lucks;

10.1101/034470 — Biochemistry — Posted on 2015-12-15

124 Proprioceptive feedback determines visuomotor gain in Drosophila

Jan Bartussek;Fritz-Olaf Lehmann;

10.1101/034371 — Animal Behavior and Cognition — Posted on 2015-12-15

125 Radiating despite a lack of character: closely related, morphologically similar, co-occurring honeyeaters have diverged ecologically

Eliot T Miller;Sarah K Wagner;Luke J Harmon;Robert E Ricklefs;

10.1101/034389 — Ecology — Posted on 2015-12-17

126 Radiating despite a lack of character: closely related, morphologically similar, co-occurring honeyeaters have diverged ecologically

Eliot T Miller;Sarah K Wagner;Luke J Harmon;Robert E Ricklefs;

10.1101/034389 — Ecology — Posted on 2015-12-14

127 An Invariants-based Method for Efficient Identification of Hybrid Species From Large-scale Genomic Data

Laura Kubatko;Julia Chifman;

10.1101/034348 — Evolutionary Biology — Posted on 2015-12-14

128 Methylome analysis reveals dysregulated developmental and viral pathways in breast cancer

Mohammed OE Abdallah;Ubai K Algizouli;Maram Abbas Suliman;Rawya Abdulaziz Abdulrahman;Mahmoud Koko;Ghimja Fessahaye;Jamal Haleem Shakir;Ahmed H. Fahal;Ahmed M Elhassan;Muntaser E Ibrahim E Ibrahim;Hiba S Mohamed;

10.1101/034322 — Genomics — Posted on 2015-12-13

129 Data-driven hypothesis weighting increases detection power in multiple testing

Nikolaos Ignatiadis;Bernd Klaus;Judith Zaugg;Wolfgang Huber;

10.1101/034330 — Bioinformatics — Posted on 2015-12-13

130 Mutation rates and the evolution of germline structure

Aylwyn Scally;

10.1101/034298 — Genetics — Posted on 2015-12-13

131 Genomic and Chemical Diversity in Cannabis

Ryan C Lynch;Daniela Vergara;Silas Tittes;Kristin White;C.J. Schwartz;Matthew J Gibbs;Travis C Ruthenburg;Kymron deCesare;Donald P Land;Nolan C Kane;

10.1101/034314 — Plant Biology — Posted on 2015-12-19

132 Genomic and Chemical Diversity in Cannabis

Ryan C Lynch;Daniela Vergara;Silas Tittes;Kristin White;C.J. Schwartz;Matthew J Gibbs;Travis C Ruthenburg;Kymron deCesare;Donald P Land;Nolan C Kane;

10.1101/034314 — Plant Biology — Posted on 2015-12-13

133 In silico identification of metabolic enzyme drug targets in Burkholderia pseudomallei

Jean F Challacombe;

10.1101/034306 — Genomics — Posted on 2015-12-13

134 RNA-seq and Bulked Segregant Analysis of a Gene Related to High Growth in Ginkgo biloba Half-siblings.

Hai Xia Tang;Ji Hong Li;Shi Yan Xing;Shu Hui Du;Zhong Tang Wang;Xiao Jing Liu;Li Min Sun;

10.1101/034272 — Genomics — Posted on 2015-12-13

135 Genetic recombination as DNA repair

Dmitri Parkhomchuk;Alexey Shadrin;Alice McHardy;

10.1101/034280 — Evolutionary Biology — Posted on 2015-12-13

136 Structural specialities, curiosities and record-breaking features of crustacean reproduction

Günter Vogt;

10.1101/034223 — Zoology — Posted on 2015-12-12

137 Structural specialities, curiosities and record-breaking features of crustacean reproduction

Günter Vogt;

10.1101/034223 — Zoology — Posted on 2015-12-11

138 Inferences from a network to a subnetwork and vice versa under an assumption of symmetry

PierGianLuca Porta Mana;Emiliano Torre;Vahid Rostami;

10.1101/034199 — Neuroscience — Posted on 2015-12-11

139 When three traits make a line: Evolution of phenotypic plasticity and genetic assimilation through linear reaction norms in stochastic environments

Torbjorn Ergon;Rolf Ergon;

10.1101/034256 — Evolutionary Biology — Posted on 2015-12-11

140 Human copy number variants are enriched in regions of low-mappability

Jean Monlong;Caroline Meloche;Guy Rouleau;Patrick Cossette;Simon Louis Girard;Guillaume Bourque;

10.1101/034165 — Genomics — Posted on 2015-12-11

141 Maternal genome-wide association study identifies a fasting glucose variant associated with offspring birth weight

Bjarke Feenstra;Alana Cavadino;Jessica Tyrrell;George McMahon;Michael Nodzenski;Momoko Horikoshi;Frank Geller;Ronny Myhre;Rebecca Richmond;Lavinia Paternoster;Jonathan Bradfield;Eskil Kreiner-Moller;Ville Huikari;Sarah Metrustry;Kathryn Lunetta;Jodie Painter;Jouke-Jan Hottenga;Catherine Allard;Sheila Barton;Ana Espinosa;Julie Marsh;Catherine Potter;Wei Ang;Diane Berry;Luigi Bouchard;Shikta Das;Hakon Hakonarson;Jani Heikkinen;Berthold Hocher;Albert Hofman;Hazel Inskip;Manolis Kogevinas;Penelope Lind;Letizia Marullo;Sarah Medland;Jeffrey Murray;Ellen Nohr;Christoph Reichetzeder;Susan Ring;Loreto

10.1101/034207 — Genetics — Posted on 2015-12-11

142 Novel protective associations with age-related macular degeneration: A common variant near CTRB1 and a rare variant in PELI3

Erin K Wagner;Yi Yu;Eric H Souied;Sanna Seitsonen;Ilkka J Immonen;Paavo Häppölä;Soumya Raychaudhuri;Mark J Daly;Johanna M. Seddon;

10.1101/034173 — Genetics — Posted on 2015-12-11

143 Peroxisomes move by hitchhiking on early endosomes using the novel linker protein PxdA

John Salogiannis;Martin J. Egan;Samara L. Reck-Peterson;

10.1101/034231 — Cell Biology — Posted on 2015-12-11

144 LORENZ SYSTEM IN THERMODYNAMICAL MODELLING OF LEUKEMIA

Igor V Alexeev;

10.1101/034132 — Cancer Biology — Posted on 2015-12-10

145 Changes in the relative abundance of two Saccharomyces species from oak forests to wine fermentations

Sofia Dashko;Ping Liu;Helena Volk;Lorena Butinar;Jure Piskur;Justin C. Fay;

10.1101/034157 — Microbiology — Posted on 2015-12-10

146 Evolutionary dynamics of cytoplasmic segregation and fusion: Mitochondrial mixing facilitated the evolution of sex at the origin of eukaryotes

Arunas L Radzvilavicius;

10.1101/034116 — Evolutionary Biology — Posted on 2015-12-10

147 Linking stimuli and behavior with fast near-whole brain recordings in adult Drosophila

Sophie Aimon;Takeo Katsuki;Logan Grosenick;Michael Broxton;Karl Deisseroth;Terrence J. Sejnowski;Ralph J Greenspan;

10.1101/033803 — Neuroscience — Posted on 2015-12-10

148 SSA.ME Detection of cancer mutual exclusivity patterns by small subnetwork analysis

Sergio Pulido-Tamayo;Bram Weytjens;Dries De Maeyer;Kathleen Marchal;

10.1101/034124 — Genomics — Posted on 2015-12-10

149 Genomic analysis reveals major determinants of cis-regulatory variation in Capsella grandiflora

Kim A Steige;Benjamin Laenen;Johan Reimegård;Douglas Scofield;Tanja Slotte;

10.1101/034025 — Evolutionary Biology — Posted on 2015-12-10

150 chromPlot: visualization of genomic data in chromosomal context

Karen Y Orostica;Ricardo A Verdugo;

10.1101/034108 — Bioinformatics — Posted on 2015-12-10

151 CrispRVariants: precisely charting the mutation spectrum in genome engineering experiments

Helen Lindsay;Alexa Burger;Berthin Biyong;Anastasia Felker;Christopher Hess;Jonas Zaugg;Elena Chiavacci;Carolin Anders;Martin Jinek;Christian Mosimann;Mark D Robinson;

10.1101/034140 — Bioinformatics — Posted on 2015-12-10

152 Ritornello: High fidelity control-free chip-seq peak calling

Kelly Patrick Stanton;Jiaqi Jin;Sherman Morton Weissman;Yuval Kluger;

10.1101/034090 — Genomics — Posted on 2015-12-11

153 Ritornello: High fidelity control-free chip-seq peak calling

Kelly Patrick Stanton;Jiaqi Jin;Sherman Morton Weissman;Yuval Kluger;

10.1101/034090 — Genomics — Posted on 2015-12-10

154 Nanopore Sequencing in Microgravity

Alexa B.R. McIntyre;Lindsay Rizzardi;Angela M Yu;Gail L. Rosen;Noah Alexander;Douglas J. Botkin;Kristen K. John;Sarah L. Castro-Wallace;Aaron S. Burton;Andrew Feinberg;Christopher E. Mason;

10.1101/032342 — Genomics — Posted on 2015-12-10

155 Combating the scientific decline effect with confidence (intervals)

David M Groppe;

10.1101/034074 — Bioinformatics — Posted on 2015-12-10

156 Effect of Poli I:C in murine model of autoimmune thyroiditis

Carolina Loreto Vera Sepulveda;MIguel Barria Maldonado;

10.1101/034066 — Immunology — Posted on 2015-12-11

157 Effect of Poli I:C in murine model of autoimmune thyroiditis

Carolina Loreto Vera Sepulveda;MIguel Barria Maldonado;

10.1101/034066 — Immunology — Posted on 2015-12-09

158 The reported healthy ageing gene expression score: lack of association in two cohorts

Luke C Pilling;Lorna W Harries;Dena G Hernandez;Andrew B Singleton;George A Kuchel;Luigi Ferrucci;David Melzer;

10.1101/034058 — Genomics — Posted on 2015-12-09

159 Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus

Betty M Booker;Tara Friedrich;Mandy K Mason;Julia E VanderMeer;Jingjing Zhao;Walter L Eckalbar;Malcolm Logan;Nicola Illing;Katherine S Pollard;Nadav Ahituv;

10.1101/034017 — Evolutionary Biology — Posted on 2015-12-09

160 Low virulence evolves as a bet-hedging strategy in fluctuating environment

Anne Nguyen;Etienne Rajon;David Fouchet;Dominique Pontier;Jorge Rabinovich;Sebastien Gourbiere;Frederic Menu;

10.1101/034041 — Evolutionary Biology — Posted on 2015-12-09

161 Habitat variability does not generally promote metabolic network modularity in flies and mammals

Kazuhiro Takemoto;

10.1101/034033 — Bioinformatics — Posted on 2015-12-09

162 A framework for collaborative computational research

Apua C. M. Paquola;Jennifer A. Erwin;Fred H. Gage;

10.1101/033654 — Bioinformatics — Posted on 2015-12-09

163 Modeling error in experimental assays using the bootstrap principle: Understanding discrepancies between assays using different dispensing technologies

Sonya M Hanson;Sean Ekins;John D Chodera;

10.1101/033985 — Biochemistry — Posted on 2015-12-09

164 Drosophila learn efficient paths to a food source

Rapeechai Navawongse;Deepak Choudhury;Marlena Raczkowska;James C Stewart;Terrence Lim;Mashiur Rahman;Alicia Guek Geok Toh;Zhiping Wang;Adam Claridge-Chang;

10.1101/033969 — Animal Behavior and Cognition — Posted on 2015-12-09

165 Multiscale Modeling of Cancer

Kerri-Ann Norton;Meghan M McCabe Pryor;Aleksander S Popel;

10.1101/033977 — Systems Biology — Posted on 2015-12-15

166 Multiscale Modeling of Cancer

Kerri-Ann Norton;Meghan M McCabe Pryor;Aleksander S Popel;

10.1101/033977 — Systems Biology — Posted on 2015-12-08

167 What’s past is present: Reminders of past choices bias decisions for reward in humans

Aaron M Bornstein;Mel W Khaw;Daphna Shohamy;Nathaniel D Daw;

10.1101/033910 — Neuroscience — Posted on 2015-12-08

168 Modeling Continuous Admixture

Ying Zhou;Hongxiang Qiu;Shuhua Xu;

10.1101/033944 — Evolutionary Biology — Posted on 2015-12-08

169 Genetic diversity on the human X chromosome does not support a strict pseudoautosomal boundary

Daniel J Cotter;Sarah M Brotman;Melissa A Wilson Sayres;

10.1101/033936 — Evolutionary Biology — Posted on 2015-12-08

170 Archaic adaptive introgression in TBX15/WARS2

Fernando Racimo;David Gokhman;Matteo Fumagalli;Torben Hansen;Ida Moltke;Anders Albrechtsen;Liran Carmel;Emilia Huerta-Sanchez;Rasmus Nielsen;

10.1101/033928 — Evolutionary Biology — Posted on 2015-12-15

171 Archaic adaptive introgression in TBX15/WARS2

Fernando Racimo;David Gokhman;Matteo Fumagalli;Torben Hansen;Ida Moltke;Anders Albrechtsen;Liran Carmel;Emilia Huerta-Sanchez;Rasmus Nielsen;

10.1101/033928 — Evolutionary Biology — Posted on 2015-12-08

172 A reductionist approach to model photosynthetic self-regulation in eukaryotes in response to light

Anna Matuszynska;Oliver Ebenhoeh;

10.1101/033894 — Systems Biology — Posted on 2015-12-07

173 Fitness effects of new mutations in Chlamydomonas reinhardtii across two stress gradients

Susanne A Kraemer;Andrew D Morgan;Robert W Ness;Peter D Keightley;Nick Colegrave;

10.1101/033886 — Genetics — Posted on 2015-12-07

174 Evolution arrests invasions of cooperative populations

Kirill S Korolev;

10.1101/033902 — Ecology — Posted on 2015-12-07

175 Principles of ipsilateral and contralateral cortico-cortical connectivity in the mouse

Alexandros Goulas;Harry BM Uylings;Claus C Hilgetag;

10.1101/033878 — Neuroscience — Posted on 2015-12-07

176 Dynamics of microbial community composition and soil organic carbon mineralization in soil following addition of pyrogenic and fresh organic matter

Thea Whitman;Charles Pepe-Ranney;Akio Enders;Chantal Koechli;Ashley Campbell;Daniel H Buckley;Johannes Lehmann;

10.1101/033811 — Microbiology — Posted on 2015-12-07

177 Integrated analysis links TP53, NOTCH, SLC38A and 11p with survival in patients with oral tongue squamous cell carcinoma

Neeraja M Krishnan;Saurabh Gupta;Costerwell Khyriem;Vinayak Palve;Amritha Suresh;Gangotri Siddappa;Vikram Kekatpure;Moni A Kuriakose;Binay Panda;

10.1101/033829 — Genomics — Posted on 2015-12-07

178 On the Apportionment of Population Structure

Yaron Granot;Omri Tal;Saharon Rosset;Karl Skorecki;

10.1101/033852 — Evolutionary Biology — Posted on 2015-12-08

179 On the Apportionment of Population Structure

Yaron Granot;Omri Tal;Saharon Rosset;Karl Skorecki;

10.1101/033852 — Evolutionary Biology — Posted on 2015-12-07

180 Extreme positive allometry of animal adhesive pads and the size limits of adhesion-based climbing.

David Labonte;Christofer J Clemente;Alex Dittrich;Chi-Yun Kuo;Alfred J Crosby;Duncan J Irschick;Walter Federle;

10.1101/033845 — Evolutionary Biology — Posted on 2015-12-07

181 Competition between binding sites determines gene expression at low transcription factor concentrations

David van Dijk;Eilon Sharon;Maya Lotan-Pompan;Adina Weinberger;Eran Segal;Lucas Carey;

10.1101/033753 — Systems Biology — Posted on 2015-12-17

182 Competition between binding sites determines gene expression at low transcription factor concentrations

David van Dijk;Eilon Sharon;Maya Lotan-Pompan;Adina Weinberger;Eran Segal;Lucas Carey;

10.1101/033753 — Systems Biology — Posted on 2015-12-06

183 A new Defective Helper RNA to produce Sindbis virus that infects neurons but does not propagate

Justus M Kebschull;Pedro Garcia da Silva;Anthony M Zador;

10.1101/033738 — Microbiology — Posted on 2015-12-06

184 Across-cohort QC analyses of genome-wide association study summary statistics from complex traits

Guo-Bo Chen;Sang Hong Lee;Matthew R Robinson;Maciej Trzaskowski;Zhi-Xiang Zhu;Thomas W Winkler;Felix R Day;Damien C Croteau-Chonka;Andrew R Wood;Adam E Locke;Zoltan Kutalik;Ruth J F Loos;Timothy M Frayling;Joel N Hirschhorn;Jian Yang;Naomi R Wray;GIANT;Peter M Visscher;

10.1101/033787 — Genetics — Posted on 2015-12-06

185 Measuring and modeling diffuse scattering in protein X-ray crystallography

Andrew H Van Benschoten;Lin Liu;Ana Gonzalez;Aaron S Brewster;Nicholas K Sauter;James S Fraser;Michael Wall;

10.1101/033746 — Biophysics — Posted on 2015-12-07

186 Measuring and modeling diffuse scattering in protein X-ray crystallography

Andrew H Van Benschoten;Lin Liu;Ana Gonzalez;Aaron S Brewster;Nicholas K Sauter;James S Fraser;Michael Wall;

10.1101/033746 — Biophysics — Posted on 2015-12-06

187 Mutation is a sufficient and robust predictor of genetic variation for mitotic spindle traits in C. elegans

Reza Farhadifar;Jose Miguel Ponciano;Erik C Andersen;Daniel J Needleman;Charles F Baer;

10.1101/033712 — Evolutionary Biology — Posted on 2015-12-05

188 Vital rates, source-sink dynamics, and type of competition in congeneric species

Simone Vincenzi;Dusan Jesensek;Alain J Crivelli;

10.1101/033720 — Ecology — Posted on 2015-12-05

189 ME-plot: A QC package for bisulfite sequencing reads

Bong-Hyun Kim;

10.1101/033696 — Bioinformatics — Posted on 2015-12-05

190 Putting value in context: A role for context memory in decisions for reward.

Aaron M Bornstein;Kenneth A Norman;

10.1101/033662 — Neuroscience — Posted on 2015-12-09

191 Putting value in context: A role for context memory in decisions for reward.

Aaron M Bornstein;Kenneth A Norman;

10.1101/033662 — Neuroscience — Posted on 2015-12-07

192 Putting value in context: A role for context memory in decisions for reward.

Aaron M Bornstein;Kenneth A Norman;

10.1101/033662 — Neuroscience — Posted on 2015-12-04

193 Classical metapopulation dynamics and eco-evolutionary feedbacks in dendritic networks

Emanuel A. Fronhofer;Florian Altermatt;

10.1101/033639 — Ecology — Posted on 2015-12-04

194 Factorbook Motif Pipeline: A de novo motif discovery and filtering web server for ChIP-seq peaks

Bong-Hyun Kim;Jiali Zhuang;Jie Wang;Zhiping Weng;

10.1101/033670 — Bioinformatics — Posted on 2015-12-04

195 Trait evolution in adaptive radiations: modelling and measuring interspecific competition on phylogenies

Magnus Clarke;Gavin H Thomas;Robert P Freckleton;

10.1101/033647 — Ecology — Posted on 2015-12-04

196 Unraveling the Genetic Architecture of Cryptic Genetic Variation

Anupama Yadav;Kaustubh Dhole;Himanshu Sinha;

10.1101/033621 — Genetics — Posted on 2015-12-04

197 Avoidance of stochastic RNA interactions can be harnessed to control protein expression levels in bacteria and archaea

Sinan Ugur Umu;Anthony M Poole;Renwick C.J. Dobson;Paul P. Gardner;

10.1101/033613 — Bioinformatics — Posted on 2015-12-04

198 Stochastic Models for Population Dynamics

Sean Sun;

10.1101/031237 — Cancer Biology — Posted on 2015-12-03

199 SLTAB2 is the paramutated SULFUREA locus in tomato

Quentin Gouil;Ondřej Novák;David Baulcombe;

10.1101/033605 — Plant Biology — Posted on 2015-12-03

200 Evolutionary dynamics of a quantitative trait in a finite asexual population.

Florence Debarre;Sarah Otto;

10.1101/033597 — Evolutionary Biology — Posted on 2015-12-03

201 Clinical Validation of a Non-Invasive Prenatal Test for Genome-Wide Detection of Fetal Copy Number Variants

Roy B Lefkowitz;John A Tynan;Tong Liu;Yijin Wu;Amin R Mazloom;Eyad Almasri;Grant Hogg;Vach Angkachatchai;Chen Zhao;Daniel S Grosu;Graham McLennan;Mathias Ehrich;

10.1101/033555 — Genomics — Posted on 2015-12-04

202 Clinical Validation of a Non-Invasive Prenatal Test for Genome-Wide Detection of Fetal Copy Number Variants

Roy B Lefkowitz;John A Tynan;Tong Liu;Yijin Wu;Amin R Mazloom;Eyad Almasri;Grant Hogg;Vach Angkachatchai;Chen Zhao;Daniel S Grosu;Graham McLennan;Mathias Ehrich;

10.1101/033555 — Genomics — Posted on 2015-12-02

203 Accelerated DNA evolution in rats is driven by differential methylation in sperm

Xiao-Hui Liu;Jin-Min Lian;Fei Ling;Ning Li;Da-Wei Wang;Ying Song;Qi-Ye Li;Ya-Bin Jin;Zhi-Yong Feng;Lin Cong;Dan-Dan Yao;Jing-Jing Sui;

10.1101/033571 — Evolutionary Biology — Posted on 2015-12-02

204 Empirical evidence for heterozygote advantage in adapting diploid populations of Saccharomyces cerevisiae

Diamantis Sellis;Daniel J Kvitek;Barbara Dunn;Gavin Sherlock;Dmitri A Petrov;

10.1101/033563 — Evolutionary Biology — Posted on 2015-12-02

205 Homeostatic activity-dependent tuning of recurrent networks for robust propagation of activity

Julijana Gjorgjieva;Jan Felix Evers;Stephen Eglen;

10.1101/033548 — Neuroscience — Posted on 2015-12-02

206 Flexibility in motor timing constrains the topology and dynamics of pattern generator circuits

Cengiz Pehlevan;Farhan Ali;Bence P. Olveczky;

10.1101/033472 — Neuroscience — Posted on 2015-12-02

207 Nested Russian Doll-like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPC

Anna E Sheppard;Nicole Stoesser;Daniel J Wilson;Robert Sebra;Andrew Kasarskis;Luke W Anson;Adam Giess;Louise J Pankhurst;Alison Vaughan;Christopher J Grim;Heather L Cox;Anthony J Yeh;the Modernising Medical Microbiology (MMM) Informa;Costi D Sifri;A. Sarah Walker;Tim E Peto;Derrick W Crook;Amy J Mathers;

10.1101/033522 — Microbiology — Posted on 2015-12-02

208 Global lengthening of 3′ untranslated regions of mRNAs by alternative cleavage and polyadenylation in cellular senescence

Miao Han;Guoliang Lv;Hongbo Nie;Ting Shen;Yichi Niu;Xueping Li;Meng Chen;Xia Zheng;Wei Li;Chen Ding;Gang Wei;Jun Gu;Xiao-Li Tian;Yufang Zheng;Xinhua Liu;Jinfeng Hu;Tao Wei;Ting Ni;

10.1101/033480 — Genomics — Posted on 2015-12-02

209 Male sex pheromone components in the butterfly Heliconius melpomene

Sohini Vanjari;Florian Mann;Richard M Merrill;Stefan Schulz;Chris D Jiggins;

10.1101/033506 — Evolutionary Biology — Posted on 2015-12-02

210 nihexporter: an R package for NIH funding data

Erin Baschal;Nick Ellinwood;Ashley Pacheco;Sally Peach;Mary Sweet;Yuying Wang;Jay Hesselberth;

10.1101/033456 — Bioinformatics — Posted on 2015-12-02

211 Reticulate evolution is favoured in influenza niche switching.

Eric J. Ma;Nichola J. Hill;Kyle Yuan;Justin Zabilansky;Jonathan A. Runstadler;

10.1101/033514 — Ecology — Posted on 2015-12-03

212 Reticulate evolution is favoured in influenza niche switching.

Eric J. Ma;Nichola J. Hill;Kyle Yuan;Justin Zabilansky;Jonathan A. Runstadler;

10.1101/033514 — Ecology — Posted on 2015-12-02

213 Blind spots in ecosystem services research and implementation

Sven Lautenbach;Anne-Christine Mupepele;Carsten F Dormann;Heera Lee;Stefan Schmidt;Samantha S.K. Scholte;Ralf Seppelt;Astrid J.A. van Teeffelen;Willem Verhagen;Martin Volk;

10.1101/033498 — Ecology — Posted on 2015-12-02

214 TopHat-Recondition: A post-processor for TopHat unmapped reads

Christian Brueffer;Lao H Saal;

10.1101/033530 — Bioinformatics — Posted on 2015-12-02

215 A conserved abundant cytoplasmic long noncoding RNA modulates repression by Pumilio proteins in human cells

Ailone Tichon;Noa Gil;Yoav Lubelsky;Tal Havkin Solomon;Doron Lemze;Shalev Itzkovitz;Noam Stern-Ginossar;Igor Ulitsky;

10.1101/033423 — Molecular Biology — Posted on 2015-12-02

216 Induced-fit of the peptidyl-transferase center of the ribosome and conformational freedom of the esterified amino acids

Jean Lehmann;

10.1101/032516 — Biochemistry — Posted on 2015-12-02

217 iCOBRA: open, reproducible, standardized and live method benchmarking

Charlotte Soneson;Mark D Robinson;

10.1101/033431 — Bioinformatics — Posted on 2015-12-01

218 Mesoscopic oscillations in a single-gene circuit without delay

Nara Guisoni;Diana Monteoliva;Luis Diambra;

10.1101/032029 — Systems Biology — Posted on 2015-12-01

219 Multidimensional Heritability Analysis of Neuroanatomical Shape

Tian Ge;Martin Reuter;Anderson M. Winkler;Avram J. Holmes;Phil H. Lee;Lee S. Tirrell;Joshua L. Roffman;Randy L. Buckner;Jordan W. Smoller;Mert R. Sabuncu;

10.1101/033407 — Neuroscience — Posted on 2015-12-01

220 Phylogenetic and functional substrate specificity for endolithic microbial communities in hyper-arid environments

Alexander Crits-Christoph;Courtney K Robinson;Bing Ma;Jacques Ravel;Jacek Wierzchos;Carmen Ascaso;Octavio Artieda;Virginia Souza-Egipsy;M. Cristina Casero;Jocelyne DiRuggiero;

10.1101/033340 — Microbiology — Posted on 2015-12-01

221 Accurate genetic profiling of anthropometric traits using a big data approach

Oriol Canela-Xandri;Konrad Rawlik;John A. Woolliams;Albert Tenesa;

10.1101/033134 — Genomics — Posted on 2015-12-01

222 No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini

Georgios Koutsovoulos;Sujai Kumar;Dominik R Laetsch;Lewis Stevens;Jennifer Daub;Claire Conlon;Habib Maroon;Fran Thomas;Aziz Aboobaker;Mark Blaxter;

10.1101/033464 — Genomics — Posted on 2015-12-13

223 No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini

Georgios Koutsovoulos;Sujai Kumar;Dominik R Laetsch;Lewis Stevens;Jennifer Daub;Claire Conlon;Habib Maroon;Fran Thomas;Aziz Aboobaker;Mark Blaxter;

10.1101/033464 — Genomics — Posted on 2015-12-01

224 Evolution of sex chromosomes is prior to speciation in the dioecious Phoenix species

Emira Cherif;Salwa Zehdi;Amandine Crabos;Karina Castillo;Nathalie Chabrillange;Jean-Christophe Pintaud;Amel Salhi-Hannachi;Sylvain Glémain;Frederique Aberlenc;

10.1101/033365 — Genetics — Posted on 2015-12-01

225 Inferring past effective population size from distributions of coalescent-times

Lucie Gattepaille;Mattias Jakobsson;

10.1101/033373 — — Posted on 2015-12-01

226 Disease variants alter transcription factor levels and methylation of their binding sites

Marc Jan Bonder;René Luijk;Daria Zhernakova;Matthijs Moed;Patrick Deelen;Martijn Vermaat;Maarten van Iterson;Freerk van Dijk;Michiel van Galen;Jan Bot;Roderick C. Slieker;P. Mila Jhamai;Michael Verbiest;H. Eka D. Suchiman;Marijn Verkerk;Ruud van der Breggen;Jeroen van Rooij;Nico Lakenberg;Wibowo Arindrarto;Szymon M. Kielbasa;Iris Jonkers;Peter van t Hof;Irene Nooren;Marian Beekman;Joris Deelen;Diana van Heemst;Alexandra Zhernakova;Ettje F. Tigchelaar;Morris A. Swertz;Albert Hofman;André G. Uitterlinden;René Pool;Jenny van Dongen;Jouke J. Hottenga;Coen D.A. Stehouwer;Carla J.H. van der Kallen;C

10.1101/033084 — Genomics — Posted on 2015-12-01

227 Disease variants alter transcription factor levels and methylation of their binding sites

10.1101/033084 — Genomics — Posted on 2015-12-01

228 Can functional traits explain phylogenetic signal in the composition of a plant community?

Daijiang Li;Anthoy R Ives;Donald M Waller;

10.1101/032938 — Ecology — Posted on 2015-12-19

229 Cell-type and state-dependent synchronization among rodent areas S1BF, V1, perirhinal cortex and hippocampus CA1

Martin Vinck;Jeroen J Bos;Laura Van Mourik-Donga;Krista Oplaat;Gerbrand A Klein;Jadin C Jackson;Luc J Gentet;Cyriel M.A. Pennartz;

10.1101/032904 — Neuroscience — Posted on 2015-12-08

230 Mind the drift - improving sensitivity to fMRI pattern information by accounting for temporal pattern drift

Arjen Alink;Alexander Walther;Alexandra Krugliak;Jasper J.F. van den Bosch;Nikolaus Kriegeskorte;

10.1101/032391 — Neuroscience — Posted on 2015-12-04

231 Potential impact of sexual transmission of Ebola virus on the epidemic in West Africa

Jessica Lee Abbate;Carmen Lia Murall;Heinz Richner;Christian L. Althaus;

10.1101/031880 — Ecology — Posted on 2015-12-04

232 Kaiju: Fast and sensitive taxonomic classification for metagenomics

Peter Menzel;Kim Lee Ng;Anders Krogh;

10.1101/031229 — Bioinformatics — Posted on 2015-12-18

233 Unraveling the mechanism of proton translocation in the extracellular half-channel of bacteriorhodopsin

Xiaoxia Ge;Marilyn R. Gunner;

10.1101/031609 — Biophysics — Posted on 2015-12-30

234 A pan-cancer analysis of prognostic genes

Jordan Anaya;Brian J Reon;Wei-Min Chen;Stefan Bekiranov;Anindya Dutta;

10.1101/030924 — Genomics — Posted on 2015-12-23

235 Dynamic stem cell states: naive to primed pluripotency in rodents and humans

Leehee Weinberger;Muneef Ayyash;Noa Novershtern;Jacob H. Hanna;

10.1101/030676 — Developmental Biology — Posted on 2015-12-12

236 Hydroxide Once or Twice? A combined Neutron Crystallographic and Quantum Chemical Study of the Hydride Shift in D-Xylose Isomerase

Matt Challacombe;Nicolas Bock;Paul Langan;Andrey Kovalevsky;

10.1101/030601 — — Posted on 2015-12-23

237 Molecular Simulation of Nonfacilitated Membrane Permeation

Ernest Awoonor-Williams;Christopher Rowley;

10.1101/029140 — Biophysics — Posted on 2015-12-25

238 RAD Capture (Rapture): Flexible and efficient sequence-based genotyping.

Omar A Ali;Sean M O'Rourke;Stephen J Amish;Mariah H Meek;Gordon Luikart;Carson Jeffres;Michael R Miller;

10.1101/028837 — Genetics — Posted on 2015-12-19

239 Cancer Classification by Correntropy-Based Sparse Compact Incremental Learning Machine

Mojtaba Nayyeri;Hossein Sharifi Noghabi;

10.1101/028720 — Bioinformatics — Posted on 2015-12-03

240 Untangling cortico-striatal connectivity and cross-frequency coupling in L-DOPA-induced dyskinesia

Jovana Belic;Per Halje;Ulrike Richter;Per Petersson;Jeanette Hellgren Kotaleski;

10.1101/028027 — Neuroscience — Posted on 2015-12-23

241 Fast and accurate long-range phasing in a UK Biobank cohort

Po-Ru Loh;Pier Francesco Palamara;Alkes L Price;

10.1101/028282 — Genetics — Posted on 2015-12-18

242 A benchmark of gene expression tissue-specificity metrics

Nadezda Kryuchkova;Marc Robinson-Rechavi;

10.1101/027755 — Bioinformatics — Posted on 2015-12-01

243 TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data

Luca De Sano;Giulio Caravagna;DANIELE RAMAZZOTTI;Alex Graudenzi;Giancarlo Mauri;Bud Mishra;Marco Antoniotti;

10.1101/027474 — Bioinformatics — Posted on 2015-12-23

244 MTG2: An efficient algorithm for multivariate linear mixed model analysis based on genomic information

Sang Hong Lee;Julius van der Werf;

10.1101/027201 — Genetics — Posted on 2015-12-02

245 Extensive sequencing of seven human genomes to characterize benchmark reference materials

Justin M Zook;David Catoe;Jennifer McDaniel;Lindsay Vang;Noah Spies;Arend Sidow;Ziming Weng;Yuling Liu;Chris Mason;Noah Alexander;Dhruva Chandramohan;Elizabeth Henaff;Feng Chen;Erich Jaeger;Ali Moshrefi;Khoa Pham;William Stedman;Tiffany Liang;Michael Saghbini;Zeljko Dzakula;Alex Hastie;Han Cao;Gintaras Deikus;Eric Schadt;Robert Sebra;Ali Bashir;Rebecca M Truty;Christopher C Chang;Natali Gulbahce;Keyan Zhao;Srinka Ghosh;Fiona Hyland;Yutao Fu;Mark Chaisson;Jonathan Trow;Chunlin Xiao;Stephen T Sherry;Alexander W Zaranek;Madeleine Ball;Jason Bobe;Preston Estep;George M Church;Patrick Marks;Sofia K

10.1101/026468 — Genomics — Posted on 2015-12-23

246 Photon-HDF5: an open file format for single-molecule fluorescence experiments using photon-counting detectors

Antonino Ingargiola;Ted Laurence;Robert Boutelle;Shimon Weiss;Xavier Michalet;

10.1101/026484 — Biophysics — Posted on 2015-12-23

247 Epistasis and destabilizing mutations shape gene expression variability in humans via distinct modes of action

Ence Yang;Gang Wang;Jizhou Yang;Beiyan Zhou;Yanan Tian;James J Cai;

10.1101/026393 — Genetics — Posted on 2015-12-14

248 How many dinosaur species were there? Fossil bias and true richness estimated using a Poisson sampling model (TRiPS)

Jostein Starrfelt;Lee Hsiang Liow;

10.1101/025940 — Paleontology — Posted on 2015-12-04

249 On the widespread and critical impact of systematic bias and batch effects in single-cell RNA-Seq data

Stephanie C Hicks;Mingxiang Teng;Rafael A Irizarry;

10.1101/025528 — Genomics — Posted on 2015-12-27

250 Antithetic Integral Feedback: A new motif for robust perfect adaptation in noisy biomolecular networks

Corentin Briat;Ankit Gupta;Mustafa Khammash;

10.1101/024919 — Systems Biology — Posted on 2015-12-06

251 A genomic region containing RNF212 and CPLX1 is associated with sexually-dimorphic recombination rate variation in wild Soay sheep (Ovis aries).

Susan E Johnston;Camillo Bérénos;Jon Slate;Josephine M Pemberton;

10.1101/024869 — Genomics — Posted on 2015-12-01

252 Hebbian Wiring Plasticity Generates Efficient Network Structures for Robust Inference with Synaptic Weight Plasticity

Naoki Hiratani;Tomoki Fukai;

10.1101/024406 — Neuroscience — Posted on 2015-12-23

253 Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry

Pavel Flegontov;Piya Changmai;Anastassiya Zidkova;Maria D. Logacheva;Nefize Ezgi Altinisik;Olga Flegontova;Mikhail S. Gelfand;Evgeny S. Gerasimov;Ekaterina V. Khrameeva;Olga P. Konovalova;Tatiana Neretina;Yuri V. Nikolsky;George Starostin;Vita V. Stepanova;Igor V. Travinsky;Martin Triska;Petr Triska;Tatiana V. Tatarinova;

10.1101/024554 — Genetics — Posted on 2015-12-14

254 Genome variation and meiotic recombination in Plasmodium falciparum: insights from deep sequencing of genetic crosses

Alistair Miles;Zamin Iqbal;Paul Vauterin;Richard Pearson;Susana Campino;Michel Theron;Kelda Gould;Daniel Mead;Eleanor Drury;John O'Brien;Valentin Ruano Rubio;Bronwyn MacInnis;Jonathan Mwangi;Upeka Samarakoon;Lisa Ranford-Cartwright;Michael Ferdig;Karen Hayton;Xinzhuan Su;Thomas Wellems;Julian Rayner;Gil McVean;Dominic Kwiatkowski;

10.1101/024182 — Genomics — Posted on 2015-12-23

255 D3M: Detection of differential distributions of methylation levels

Yusuke Matsui;Masahiro Mizuta;Satoru Miyano;Teppei Shimamura;

10.1101/023879 — Bioinformatics — Posted on 2015-12-16

256 Formation and maintenance of robust long-term information storage in the presence of synaptic turnover

Michael Fauth;Florentin Wörgötter;Christian Tetzlaff;

10.1101/023531 — Neuroscience — Posted on 2015-12-04

257 Dendrites enable a robust mechanism for neuronal stimulus selectivity

Romain D. Cazé;Sarah Jarvis;Amanda Joy Foust;Simon R Schultz;

10.1101/023200 — Neuroscience — Posted on 2015-12-12

258 On the identifiability of transmission dynamic models for infectious diseases

Jarno Lintusaari;Michael U. Gutmann;Samuel Kaski;Jukka Corander;

10.1101/021972 — Bioinformatics — Posted on 2015-12-11

259 A simple method for automated equilibration detection in molecular simulations

John D Chodera;

10.1101/021659 — Biophysics — Posted on 2015-12-30

260 A simple method for automated equilibration detection in molecular simulations

John D Chodera;

10.1101/021659 — Biophysics — Posted on 2015-12-16

261 Variation-preserving normalization unveils blind spots in gene expression profiling

Carlos P. Roca;Susana I. L. Gomes;Mónica J. B. Amorim;Janeck J. Scott-Fordsmand;

10.1101/021212 — Genomics — Posted on 2015-12-04

262 Environmental fluctuations do not select for increased variation or population-based resistance in Escherichia coli

Shraddha Madhav Karve;Kanishka Tiwary;S Selveshwari;Sutirth Dey;

10.1101/021030 — Evolutionary Biology — Posted on 2015-12-23

263 Variability in cellular gene expression profiles and homeostatic regulation

Yuriy Mishchenko;

10.1101/021048 — Cell Biology — Posted on 2015-12-28

264 Variability in cellular gene expression profiles and homeostatic regulation

Yuriy Mishchenko;

10.1101/021048 — Cell Biology — Posted on 2015-12-25

265 Probing the fabric of the rare biosphere

Bibiana G. Crespo;Philip J. Wallhead;Ramiro Logares;Carlos Pedros-Alio;

10.1101/020818 — Microbiology — Posted on 2015-12-08

266 MERS-CoV recombination: implications about the reservoir and potential for adaptation

Gytis Dudas;Andrew Rambaut;

10.1101/020834 — Evolutionary Biology — Posted on 2015-12-23

267 Concordance and incongruence in preclinical anxiety models: systematic review and meta-analyses

Farhan Mohammad;Joses Ho;Chun Lei Lim;Jia Hern Woo;Dennis Jun Jie Poon;Bhumika Lamba;Adam Claridge-Chang;

10.1101/020701 — Animal Behavior and Cognition — Posted on 2015-12-18

268 svclassify: a method to establish benchmark structural variant calls

Hemang Parikh;Marghoob Mohiyuddin;Hugo Y. K. Lam;Hariharan Iyer;Desu Chen;Mark Pratt;Gabor Bartha;Noah Spies;Wolfgang Losert;Justin M. Zook;Marc L. Salit;

10.1101/019372 — Genomics — Posted on 2015-12-18

269 Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION sequencing

Minh Duc Cao;Devika Ganesamoorthy;Alysha Elliott;Huihui Zhang;Matthew Cooper;Lachlan Coin;

10.1101/019356 — Bioinformatics — Posted on 2015-12-09

270 Integration of experiments across diverse environments identifies the genetic determinants of variation in Sorghum bicolor seed element composition

Nadia Shakoor;Greg Ziegler;Brian P Dilkes;Zachary Brenton;Richard Boyles;Erin L Connolly;Stephen Kresovich;Ivan Baxter;

10.1101/019083 — Genetics — Posted on 2015-12-19

271 Phenotypic Covariation And Morphological Diversification In The Ruminant Skull

Annat Haber;

10.1101/017533 — Evolutionary Biology — Posted on 2015-12-06

272 A general theory of individuated multicellularity

Felipe A. Veloso;

10.1101/016840 — Developmental Biology — Posted on 2015-12-09

273 Detecting hidden diversification shifts in models of trait-dependent speciation and extinction

Jeremy M Beaulieu;Brian C O'Meara;

10.1101/016386 — Evolutionary Biology — Posted on 2015-12-09

274 Privacy-preserving search for chemical compound databases

Kana Shimizu;Koji Nuida;Hiromi Arai;Shigeo Mitsunari;Nuttapong Attrapadung;Michiaki Hamada;Koji Tsuda;Takatsugu Hirokawa;Jun Sakuma;Goichiro Hanaoka;Kiyoshi Asai;

10.1101/013995 — Bioinformatics — Posted on 2015-12-28

275 Epigenomic co-localization and co-evolution reveal a key role for 5hmC as a communication hub in the chromatin network of ESCs

David Juan;Juliane Perner;Enrique Carrillo de Santa Pau;Simone Marsili;David Ochoa;Ho-Ryun Chung;Martin Vingron;Daniel Rico;Alfonso Valencia;

10.1101/008821 — Bioinformatics — Posted on 2015-12-03

276 Mesoscale analyses of fungal networks as an approach for quantifying phenotypic traits

Sang Hoon Lee;Mark D Fricker;Mason A Porter;

10.1101/006544 — Plant Biology — Posted on 2015-12-23

Archive, 2015-12