bioRxiv directory

Arun Nemani;Meryem A Yucel;Uwe Kruger;Denise W Gee;Clairice A Cooper;Steven D Schwaitzberg;Suvranu De;Xavier Intes

10.1101/204305 — neuroscience — Posted on 2017-10-16

3 Firing pattern classification and phenotyping in a knowledge base of hippocampal neuron types

Komendantov, A. O.; Venkadesh, S.; Rees, C. L.; Wheeler, D. W.; Hamilton, D. J.; Ascoli, G. A.

10.1101/212084 — neuroscience — Posted on 2017-10-31

4 Transcriptomic characterization of MRI contrast with focus on the T1-w/T2-w ratio in the cerebral cortex

Ritchie, J.; Pantazatos, S.; French, L.

10.1101/196386 — neuroscience — Posted on 2017-10-31

5 C11orf70 mutations causing primary ciliary dyskinesia disrupt a conserved step in the intraflagellar transport-dependent assembly of multiple axonemal dyneins

Fassad, M. R.; Shoemark, A.; le Borgne, P.; Koll, F.; Patel, M.; Dixon, M.; Hayward, J.; Richardson, C.; Frost, E.; Jenkins, L.; Cullup, T.; Chung, E. M. K.; Lemullois, M.; Aubusson-Fleury, A.; Hogg, C.; Mitchell, D. R.; Tassin, A.-M.; Mitchison, H. M.

10.1101/211953 — genetics — Posted on 2017-10-31

6 Forest Dormouse (Dryomys nitedula) populations in southern Italy belong to a deeply divergent evolutionary lineage

Bisconti, R.; Aloise, G.; Siclari, A.; Fava, V.; Provenzano, M.; Arduino, P.; Chiocchio, A.; Nascetti, G.; Canestrelli, D.

10.1101/210070 — evolutionary biology — Posted on 2017-10-31

7 A Real-Time Double Error Correction Model of Associative Learning

Kokkola, N. H. B.; Mondragon, E.; Alonso, E.

10.1101/210674 — animal behavior and cognition — Posted on 2017-10-31

8 Universal Scaling in Biochemical Networks

Kim, H.; Smith, H.; Mathis, C.; Raymond, J.; Walker, S.

10.1101/212118 — systems biology — Posted on 2017-10-31

9 Enabling Precision Medicine via standard communication of NGS provenance, analysis, and results

Alterovitz, G.; Dean, D. A.; Goble, C.; Crusoe, M. R.; Soiland-Reyes, S.; Bell, A.; Hayes, A.; King, C. H. S.; Taylor, D.; Johanson, E.; Thompson, E. E.; Donaldson, E.; Morizono, H.; Tsang, H. S.; Goecks, J.; Yao, J.; Almeida, J. S.; Krampis, K.; Guo, L.; Walderhaug, M.; Walsh, P.; Kahsay, R.; Gottipati, S.; Bloom, T.; Lai, Y.; Simonyan, V.; Mazumder, R.

10.1101/191783 — scientific communication and education — Posted on 2017-10-31

10 Representation of speech in noise in the aging midbrain and cortex: aging may dominate over hearing-loss

Presacco, A.; Simon, J. Z.; Anderson, S.

10.1101/212159 — neuroscience — Posted on 2017-10-31

11 Ligand-Mediated Biofilm Formation via Enhanced Physical Interaction Between a Diguanylate Cyclase and Its Receptor

Giacalone, D.; Smith, T. J.; Collins, A.; Sondermann, H.; Koziol, L. J.; O'Toole, G.

10.1101/212183 — microbiology — Posted on 2017-10-31

12 Hypermethylation of human DNA: Fine-tuning transcription associated with development

Baribault, C.; Ehrlich, K. C.; Ponnaluri, V. K. C.; Pradhan, S.; Lacey, M.; Ehrlich, M.

10.1101/212191 — genomics — Posted on 2017-10-31

13 Population Genetics Based Phylogenetics Under Stabilizing Selection for an Optimal Amino Acid Sequence: A Nested Modeling Approach

Beaulieu, J.; O'Meara, B.; Zaretzki, R.; Landerer, C.; Chai, J.; Gilchrist, M. A.

10.1101/120238 — evolutionary biology — Posted on 2017-10-31

14 phylopath: Easy phylogenetic path analysis in R.

van der Bijl, W.

10.1101/212068 — evolutionary biology — Posted on 2017-10-31

15 Likelihood analysis of population genetic data under coalescent models: computational and inferential aspects

Rousset, F.; Beeravolu, C. R.; Leblois, R.

10.1101/185702 — evolutionary biology — Posted on 2017-10-31

16 Trends and variation in Prescribing of Low-Priority Medicines Identified by NHS England: A Cross-Sectional Study and Interactive Data Tool in English Primary Care

Walker, A. J.; Curtis, H. J.; Bacon, S.; Croker, R.; Goldacre, B.

10.1101/211235 — epidemiology — Posted on 2017-10-31

17 Pathogen Population Structure Can Explain Hospital Outbreaks

Spagnolo, F.; Cristofari, P.; Tattonetti, N. P.; Ginzburg, L. R.; Dykhuizen, D. E.

10.1101/210534 — epidemiology — Posted on 2017-10-31

18 Exploiting delayed transitions to sustain semiarid ecosystems after catastrophic shifts

Vidiella, B.; Sardanyes, J.; Sole, R.

10.1101/211987 — ecology — Posted on 2017-10-31

19 Planar Cell Polarity: What Does The prickle Gene Do?

Casal, J.; Ibanez-Jimenez, B.; Lawrence, P. A.

10.1101/212167 — developmental biology — Posted on 2017-10-31

20 MYC activity is required for maintenance of the Neuromesodermal Progenitor signalling network and for correct timing of segmentation clock gene oscillations

Mastromina, I.; Verrier, L.; Storey, K. G.; Dale, J. K.

10.1101/212035 — developmental biology — Posted on 2017-10-31

21 C24 sphingolipids play a surprising and central role in governing cholesterol and lateral organization of the live cell plasma membrane

Courtney, K. C.; Pezeshkian, W.; Raghupathy, R.; Zhang, G.; Darbyson, A.; Ipsen, J. H.; Ford, D. A.; Khandelia, H.; Presley, J. F.; Zha, X.

10.1101/212142 — cell biology — Posted on 2017-10-31

22 Synergism between a simple sugar and a small intrinsically disordered protein mitigate the lethal stresses of severe water loss

Kim, S. X.; Camdere, G.; Hu, X.; Koshland, D.; Tapia, H.

10.1101/209163 — cell biology — Posted on 2017-10-31

23 Comparison of the 3D-IR-BTFE method and the conventional method in the head MRI contrast

Hirahara, D.

10.1101/211763 — bioengineering — Posted on 2017-10-31

24 HDAC11 regulates type I interferon signaling through defatty-acylation of SHMT2

Cao, J.; Sun, L.; Aramsangtienchai, P.; Spiegelman, N. A.; Zhang, X.; Seto, E.; Lin, H.

10.1101/211706 — biochemistry — Posted on 2017-10-31

25 HDAC11 is a fatty-acid deacylase

Kutil, Z.; Novakova, Z.; Meleshin, M.; Mikesova, J.; Schutkowski, M.; Barinka, C.

10.1101/212043 — biochemistry — Posted on 2017-10-31

26 Fluid mediated self-organization of ventilation in honeybee nests

Peters, J. M.; Peleg, O.; Mahadevan, L.

10.1101/212100 — animal behavior and cognition — Posted on 2017-10-31

27 Discovery of unique loci that underlie nematode responses to benzimidazoles

Zamanian, M.; Cook, D. E.; Zdraljevic, S.; Brady, S. C.; Lee, D.; Lee, J.; Andersen, E.

10.1101/116970 — genetics — Posted on 2017-10-31

28 Heterosis is a systemic property emerging from nonlinear genotype-phenotype relationships: evidence from in vitro genetics and computer simulations

Fievet, J. B.; Nidelet, T.; Dillmann, C.; de Vienne, D.

10.1101/170902 — systems biology — Posted on 2017-10-31

29 Brief targeted memory reactivation during the awake state enhances memory stability and benefits the weakest memories

Tambini, A.; Berners-Lee, A.; Davachi, L.

10.1101/196436 — neuroscience — Posted on 2017-10-31

30 Lessons from simple marine models on the bacterial regulation of eukaryotic development

Woznica, A.; King, N.

10.1101/211797 — microbiology — Posted on 2017-10-31

31 A mechanism for prime-realignment during influenza A virus replication

Oymans, J.; te Velthuis, A.

10.1101/138487 — microbiology — Posted on 2017-10-31

32 Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

Ye, C. J.; Chen, J.; Villani, A.-C.; Subramaniam, M.; Gate, R. E.; Bhangale, T.; Lee, M. N.; Raj, T.; Raychowdhury, R.; Li, W.; Rogel, N.; Imboywa, S. H.; Chipendo, P. I.; McCabe, C.; Lee, M. H.; Frohlich, I. Y.; Stranger, B. E.; De Jager, P. L.; Regev, A.; Behrens, T.; Hacohen, N.

10.1101/188961 — genomics — Posted on 2017-10-31

33 Genome-wide Association Study Links APOEϵ4 and BACE1 Variants with Plasma Amyloid β Levels

Chouraki, V.; van der Lee, S. J.; Grenier-Boley, B.; Simino, J.; Adams, H.; Tosto, G.; White, C.; Terzikhan, N.; Cruchaga, C.; Knol, M. J.; Li, S.; Schraen, S.; Grove, M. L.; Satizabal, C. L.; Amin, N.; Berr, C.; Younkin, S.; Alzheimer's Disease Neuroimaging Initiative, ; Gottesman, R. F.; Buee, L.; Beiser, A.; Knopman, D. S.; Uitterlinden, A.; DeCarli, C.; Bressler, J.; DeStefano, A.; Dartigues, J.-F.; Yang, Q.; Boerwinkle, E.; Tzourio, C.; Fornage, M.; Ikram, M. A.; Amouyel, P.; de Jager, P.; Reitz, C.; Mosley, T. H.; Lambert, J.-C.; Seshadri, S.; van Duijn, C.

10.1101/194266 — genetics — Posted on 2017-10-31

34 Metabolomics reveals that dietary xenoestrogens alter cellular metabolism induced by palbociclib/letrozole combination cancer therapy

Warth, B.; Raffeiner, P.; Granados, A.; Huan, T.; Fang, M.; Forsberg, E. M.; Benton, H. P.; Goetz, L.; Johnson, C.; Siuzdak, G.

10.1101/188102 — cancer biology — Posted on 2017-10-31

35 The mechano-chemistry of a monomeric reverse transcriptase

Malik, O.; Khamis, H.; Rudnizky, S.; Kaplan, A.

10.1101/194159 — biophysics — Posted on 2017-10-31

36 Experimenting with reproducibility in bioinformatics

Kim, Y.-M.; Poline, J.-B.; Dumas, G.

10.1101/143503 — bioinformatics — Posted on 2017-10-31

37 Effect size and statistical power in the rodent fear conditioning literature - a systematic review

Carneiro, C. F. D.; Moulin, T. C.; Macleod, M. R.; Amaral, O. B.

10.1101/116202 — neuroscience — Posted on 2017-10-31

38 Adsorption and conformation of lysozyme and α-lactalbumin at water-octane interface

Cheung, D. L.

10.1101/155341 — biophysics — Posted on 2017-10-31

39 COBRAme: A Computational Framework for Models of Metabolism and Gene Expression

Lloyd, C. J.; Ebrahim, A.; Yang, L.; King, Z. A.; Catoiu, E.; O'Brien, E. J.; Liu, J. K.; Palsson, B. O.

10.1101/106559 — systems biology — Posted on 2017-10-31

40 Beyond the Michaelis-Menten equation: Accurate and efficient estimation of enzyme kinetic parameters

Choi, B.; Rempala, G. A.; Kim, J. K.

10.1101/211961 — systems biology — Posted on 2017-10-31

41 Uneven Data Quality and the Earliest Occupation of Europe: The Case of Untermassfeld (Germany)

Roebroeks, W.; Gaudzinski-Windheuser, S.; Baales, M.; Kahlke, R.-D.

10.1101/211268 — paleontology — Posted on 2017-10-31

42 Easyml: Easily Build And Evaluate Machine Learning Models

Ahn, W.-Y.; Hendricks, P.; Haines, N.

10.1101/137240 — neuroscience — Posted on 2017-10-31

43 Dynamics of brain activity reveal a unitary recognition signal

Weidemann, C. T.; Kahana, M. J.

10.1101/165225 — neuroscience — Posted on 2017-10-31

44 Neural systems of cognitive demand avoidance

Sayali, C.; Badre, D.

10.1101/211375 — neuroscience — Posted on 2017-10-31

45 A neuronal mechanism underlying decision-making deficits during hyperdopaminergic states

Verharen, J. P. H.; de Jong, J. W.; Roelofs, T. J. M.; Huffels, C. F. M.; van Zessen, R.; Luijendijk, M. C. M.; Hamelink, R.; Willuhn, I.; den Ouden, H. E. M.; van der Plasse, G.; Adan, R. A. H.; Vanderschuren, L. J. M. J.

10.1101/211862 — neuroscience — Posted on 2017-10-31

46 Acute physical exercise improves memory consolidation in humans via BDNF and endocannabinoid signaling

Marin Bosch, B.; Bringard, A.; Logrieco, M. G.; Imobersteg, N. M.; Ferretti, G.; Thomas, A.; Schwartz, S.; Igloi, K.

10.1101/211227 — neuroscience — Posted on 2017-10-31

47 Quasi-Periodic Patterns of Intrinsic Brain Activity in Individuals and their Relationship to Global Signal

Yousefi, B.; Shin, J.; Schumacher, E. H.; Keilholz, S. D.

10.1101/180596 — neuroscience — Posted on 2017-10-31

48 Exploration and recency as the main proximate causes of probability matching: a reinforcement learning analysis

Feher da Silva, C.; Victorino, C. G.; Caticha, N.; Baldo, M. V. C.

10.1101/104752 — neuroscience — Posted on 2017-10-31

49 Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially processed plant derived carbon

Starr, E. P.; Shi, S.; Blazewicz, S. J.; Probst, A. J.; Herman, D. J.; Firestone, M. A.; Banfield, J. F.

10.1101/211649 — microbiology — Posted on 2017-10-31

50 Bacterium-triggered remodeling of chromatin identifies BasR, a novel regulator of fungal natural product biosynthesis

Fischer, J.; Müller, S.; Gacek-Matthews, A.; Netzker, T.; Jäger, N.; Scherlach, K.; Stroe, M. C.; Garcia-Altares, M.; Pezzini, F.; Schoeler, H.; Reichelt, M.; Gershenzon, J.; Krespach, M. K. C.; Shelest, E.; Schroeckh, V.; Valiante, V.; Heinzel, T.; Hertweck, C.; Strauss, J.; Brakhage, A. A.

10.1101/211979 — microbiology — Posted on 2017-10-31

51 Genomic features and evolution of the conditionally dispensable chromosome in the tangerine pathotype of Alternaria alternata

Wang, M.; Fu, H.; Shen, X.-X.; Ruan, R.; Pun, N.; Xu, J.; Li, H.; Rokas, A.

10.1101/207746 — microbiology — Posted on 2017-10-31

52 Protein Moonlighting Revealed by Non-Catalytic Phenotypes of Yeast Enzymes

Espinosa-Cantu, A.; Ascencio, D.; Herrera-Basurto, S.; Xu, J.; Roguev, A.; Krogan, N. J.; DeLuna, A.

10.1101/211755 — genetics — Posted on 2017-10-31

53 Equivalence of LD-Score Regression and Individual-Level-Data Methods

de Vlaming, R.; Johannesson, M.; Magnusson, P. K. E.; Ikram, M. A.; Visscher, P. M.

10.1101/211821 — genetics — Posted on 2017-10-31

54 Genetic and environmental determinants of stressful life events and their overlap with depression and neuroticism

Clarke, T.-K.; Navrady, L.; Zeng, Y.; Xia, C.; Haley, C.; Campbell, A.; Navarro, P.; Amador, C.; Adams, M.; Howard, D. M.; Arnau Soler, A.; Hayward, C.; Thomson, P.; Smith, B.; Padmanabhan, S.; Hocking, L.; Hall, L.; Porteous, D.; Deary, I.; McIntosh, A.

10.1101/211896 — genetics — Posted on 2017-10-31

55 Contemporary evolution of a Lepidopteran species, Heliothis virescens, in response to modern agricultural practices

Fritz, M. L.; DeYonke, A. M.; Papanicolaou, A.; Micinski, S.; Westbrook, J.; Gould, F.

10.1101/103382 — evolutionary biology — Posted on 2017-10-31

56 The Trauma Severity Model: An Ensemble Learning Approach to Risk Prediction

Gorczyca, M. T.; Toscano, N. C.; Cheng, J. D.

10.1101/210575 — epidemiology — Posted on 2017-10-31

57 The frailty index is associated with the need for care in an aging Swedish population

Jylhava, J.; Jiang, M.; Foebel, A. D.; Pedersen, N. L.; Hagg, S.

10.1101/212001 — epidemiology — Posted on 2017-10-31

58 High-resolution modeling of thermal thresholds and multiple environmental influences on coral bleaching for regional and local reef managements

Kumagai, N. H.; Yamano, H.; Sango Map Project Committee,

10.1101/211854 — ecology — Posted on 2017-10-31

59 Pollinator traits and competitive context shape dynamic foraging behavior in bee communities.

Briggs, H.; Brosi, B.

10.1101/211326 — ecology — Posted on 2017-10-31

60 Carry-over effects of larval microclimate on the transmission potential of a mosquito-borne pathogen

Evans, M. V.; Shiau, J. C.; Solano, N.; Brindley, M. A.; Drake, J. M.; Murdock, C. C.

10.1101/211037 — ecology — Posted on 2017-10-31

61 Incipient signs of genetic differentiation among African elephant populations in fragmenting miombo ecosystems in south-western Tanzania

Lobora, A. L.; Nahonyo, C. L.; Munishi, L. K.; Caro, T.; Foley, C.; Beale, C. M.; Eggert, L. S.

10.1101/210179 — ecology — Posted on 2017-10-31

62 Epigenetic Regulators Modulate Muscle Damage In Duchenne Muscular Dystrophy Model

Bajanca, F.; Vandel, L.

10.1101/211870 — developmental biology — Posted on 2017-10-31

63 Structure of the fission yeast actomyosin ring during constriction

Swulius, M. T.; Nguyen, L. T.; Ladinsky, M. S.; Ortega, D. R.; Aich, S.; Mishra, M.; Jensen, G. J.

10.1101/194902 — cell biology — Posted on 2017-10-31

64 A size-invariant bud-length timer enables robustness in yeast cell size control

Allard, C. A. H.; Decker, F.; Weiner, O. D.; Toettcher, J. E.; Graziano, B. R.

10.1101/211714 — cell biology — Posted on 2017-10-31

65 Morphological changes of plasma membrane and protein assembly during clathrin-mediated endocytosis

Yoshida, A.; Sakai, N.; Uekusa, Y.; Imaoka, Y.; Itagaki, Y.; Suzuki, Y.; Yoshimura, S. H.

10.1101/209791 — cell biology — Posted on 2017-10-31

66 The amyloidogenicity of the influenza virus PB1-derived peptide sheds light on its antiviral activity

Zabrodskaya, Y. A.; Lebedev, D. V.; Egorova, M. A.; Shaldzhyan, A. A.; Shvetsov, A. V.; Kuklin, A. I.; Vinogradova, D. S.; Klopov, N. V.; Matusevich, O. V.; Cheremnykh, T. A.; Dattani, R.; Egorov, V. V.

10.1101/211284 — biophysics — Posted on 2017-10-31

67 GeTFEP: a general transfer free energy profile for transmembrane proteins

Tian, W.; Naveed, H.; Lin, M.; Liang, J.

10.1101/191650 — biophysics — Posted on 2017-10-31

68 GPseudoRank: MCMC for sampling from posterior distributions of pseudo-orderings using Gaussian processes

Strauss, M. E.; Reid, J. E.; Wernisch, L.

10.1101/211417 — bioinformatics — Posted on 2017-10-31

69 WorMachine: Machine Learning-Based Phenotypic Analysis Tool for Worms

Hakim, A.; Mor, Y.; Toker, I. A.; Levine, A.; Markovitz, Y.; Rechavi, O.

10.1101/211359 — bioinformatics — Posted on 2017-10-31

70 accuMUlate: A mutation caller designed for mutation accumulation experiments

Winter, D.; Wu, S. H.; Howell, A. A.; Azevedo, R.; Zufall, R.; Cartwright, R.

10.1101/182956 — bioinformatics — Posted on 2017-10-31

71 ITHANET: Information and database community portal for haemoglobinopathies

Kountouris, P.; Stephanou, C.; Bento, C.; Fanis, P.; Elion, J.; Ramesar, R. S.; Zilfalil, B. A.; Robinson, H. M.; Traeger-Synodinos, J.; Human Variome Project Global Globin 2020 Challenge, ; Lederer, C. W.; Kleanthous, M.

10.1101/209361 — bioinformatics — Posted on 2017-10-31

72 Genetic Locus Modulating IOP

King, R.; Li, Y.; Wang, J.; Struebing, F. L.; Geisert, E. E.

10.1101/204073 — bioinformatics — Posted on 2017-10-31

73 Successful aggregation of Tau protein labelled on its native cysteines

Radli, M.; Verdonschot, R. E.; Ferrari, L.; Rudiger, S. G. D.

10.1101/211904 — biochemistry — Posted on 2017-10-31

74 High-frequency off-target mutagenesis induced by CRISPR/Cas9 in Arabidopsis and its prevention by improving specificity of the tools

Zhang, Q.; Xing, H.-L.; Wang, Z.-P.; Zhang, H.-Y.; Yang, F.; Zhou, Y.; Wang, X.-C.; Chen, Q.-J.

10.1101/203489 — molecular biology — Posted on 2017-10-31

75 Lamins organize the global three-dimensional genome from the nuclear periphery

Zheng, X.; Hu, J.; Yue, S.; Kristiani, L.; Kim, M.; Sauria, M.; Taylor, J.; Kim, Y.; Zheng, Y.

10.1101/211656 — genomics — Posted on 2017-10-31

76 Mechanical stretching can modify the axial morphology of early chick embryos

Nelemans, B. K. A.; Schmitz, M.; Tahir, H.; Merks, R. M. H.; Smit, T. H.

10.1101/211623 — developmental biology — Posted on 2017-10-31

77 Phosphorylation of the synaptonemal complex protein SYP-1 promotes meiotic chromosome segregation

Sato-Carlton, A.; Nakamura-Tabuchi, C.; Chartrand, S. K.; Uchino, T.; Carlton, P. M.

10.1101/211672 — cell biology — Posted on 2017-10-31

78 Local and global Cdc42 GEFs for fission yeast cell polarity are coordinated by microtubules and the Tea1/Tea4/Pom1 axis

Tay, Y. D.; Leda, M.; Goryachev, A. B.; Sawin, K. E.

10.1101/211912 — cell biology — Posted on 2017-10-31

79 Two-photon photoactivated voltage imaging in tissue with an Archaerhodopsin-derived reporter

Chien, M.-P.; Brinks, D.; Adam, Y.; Bloxham, W.; Kheifets, S.; Cohen, A. E.

10.1101/211946 — neuroscience — Posted on 2017-10-31

80 The role of chromosomal inversions in speciation

Fuller, Z.; Leonard, C.; Young, R.; Schaeffer, S.; Phadnis, N.

10.1101/211771 — evolutionary biology — Posted on 2017-10-31

81 Probabilistic Count Matrix Factorization for Single Cell Expression Data Analysis

Durif, G.; Modolo, L.; Mold, J. E.; Lambert-Lacroix, S.; Picard, F.

10.1101/211938 — bioinformatics — Posted on 2017-10-31

82 Reward and automatic processes in exercise behavior: A new approach and a systematic review

Cheval, B.; Radel, R.; Neva, J. L.; Boyd, L. A.; Swinnen, S. P.; Sander, D.; Boisgontier, M.

10.1101/211425 — neuroscience — Posted on 2017-10-30

83 Spatial theta cells in competitive burst synchronization networks: Reference frames from phase codes

Monaco, J. D.; Blair, H. T.; Zhang, K.

10.1101/211458 — neuroscience — Posted on 2017-10-30

84 Clostridium difficile differentially alters the structure and metabolism of distinct cecal microbiomes to promote persistent colonization during infection

Jenior, M. L.; Leslie, J. L.; Young, V. B.; Schloss, P. D.

10.1101/211516 — microbiology — Posted on 2017-10-30

85 Whole-genome sequencing of Nicotiana glauca

Khafizova, G.; Dobrynin, P.; Polev, D.; Matveeva, T.

10.1101/211482 — genomics — Posted on 2017-10-30

86 A longitudinal model of human neuronal differentiation for functional investigation of schizophrenia disease susceptibility

Ori, A. P. S.; Bot, M. H. M.; Molenhuis, R. T.; Olde Loohuis, L. M.; Ophoff, R. A.

10.1101/211581 — genetics — Posted on 2017-10-30

87 Pharaoh ant colonies dynamically regulate colony demography by culling young queen and male-destined larvae

Warner, M.; Lipponen, J.; Linksvayer, T. A.

10.1101/211573 — ecology — Posted on 2017-10-30

88 CODEX2: full-spectrum copy number variation detection by high-throughput DNA sequencing

Jiang, Y.; Nathanson, K. L.; Zhang, N. R.

10.1101/211698 — bioinformatics — Posted on 2017-10-30

89 Protective role of the vulture facial and gut microbiomes aid adaptation to scavenging

Zepeda Mendoza, M. L.; Graves, G. R.; Roggenbuck, M.; Manzano Vargas, K.; Hansen, L. H.; Brunak, S.; Gilbert, M. T. P.; Sicheritz-Ponten, T.

10.1101/211490 — bioinformatics — Posted on 2017-10-30

90 INFERNO - INFERring the molecular mechanisms of NOncoding genetic variants

Amlie-Wolf, A.; Tang, M.; Mlynarski, E. E.; Kuksa, P. P.; Valladares, O.; Katanic, Z.; Tsuang, D.; Brown, C. D.; Schellenberg, G. D.; Wang, L.-S.

10.1101/211599 — bioinformatics — Posted on 2017-10-30

91 Extracting active modules from multilayer PPI network: a continuous optimization approach

Li, D.; Zhu, Z.; Pan, Z.; Hu, G.; He, S.

10.1101/211433 — bioinformatics — Posted on 2017-10-30

92 Learning the structure of the world: The adaptive nature of state-space and action representations in multi-stage decision-making

Dezfouli, A.; Balleine, B. W.

10.1101/211664 — animal behavior and cognition — Posted on 2017-10-30

93 Phosphorylation-induced K63-polyubiquitination of Connexin 43 regulates gap junction internalization

Kells-Andrews, R. M.; Falk, M. M.

10.1101/211607 — cell biology — Posted on 2017-10-30

94 Conserved patterns of somatic mutations in human peripheral blood cells

Liggett, L. A.; Sharma, A.; De, S.; DeGregori, J.

10.1101/208066 — genetics — Posted on 2017-10-30

95 The Bio::Phylo libraries for phylogenetic data analysis, version 2.0

Vos, R. A.; Hettling, H.

10.1101/211334 — bioinformatics — Posted on 2017-10-30

96 The Social Genome of Friends and Schoolmates in the National Longitudinal Study of Adolescent to Adult Health

Domingue, B. W.; Belsky, D.; Fletcher, J.; Conley, D.; Boardman, J. D.; Harris, K. M.

10.1101/107045 — genetics — Posted on 2017-10-30

97 Targeting the Untargetable: Predicting Pramlintide Resistance Using a Neural Network Based Cellular Automata

Kim, E.; Schenck, R.; West, J.; Cross, W.; Harris, V.; McKenna, J.; Cho, H.; Coker, E.; Lee-Kramer, S.; Tsai, K.; Flores, E.; Gatenbee, C. D.

10.1101/211383 — cancer biology — Posted on 2017-10-30

98 Changes In LXRα Phosphorylation Promote A Novel Diet-Induced Transcriptome That Alters The Transition From Fatty Liver To Steatohepatitis

Becares, N.; Gage, M. C.; Martin-Gutierrez, L.; Pourcet, B.; Louie, R.; Pello, O. M.; Luong, T. V.; Goni, S.; Liang, N.; Pichardo, C.; Shrestha, E.; Roberg-Larsen, H.; Diaz, V.; Steffensen, K.; Garabedian, M. J.; Rombouts, K.; Treuter, E.; Pineda-Torra, I.

10.1101/127779 — pathology — Posted on 2017-10-30

99 Unsupervised detection of cell-assembly sequences with edit similarity score

Watanabe, K.; Haga, T.; Euston, D. R.; Tatsuno, M.; Fukai, T.

10.1101/202655 — neuroscience — Posted on 2017-10-30

100 The BXD Mouse Strains are a Model System for Studying Optic Nerve Regeneration

Wang, J.; Li, Y.; King, R.; Struebing, F. L.; Geisert, E. E.

10.1101/204842 — neuroscience — Posted on 2017-10-30

101 Genomic Locus Modulating IOP in the BXD RI Mouse Strains

King, R. A.; Li, Y.; Wang, J.; Struebing, F.; Geisert, E. E.

10.1101/202937 — genetics — Posted on 2017-10-30

102 The effect of strong purifying selection on genetic diversity

Cvijovic, I.; Good, B. H.; Desai, M. M.

10.1101/211557 — evolutionary biology — Posted on 2017-10-30

103 Inferring parameters for a lattice-free model of cell migration and proliferation using experimental data

Browning, A.; McCue, S. W.; Binny, R. N.; Plank, M. J.; Shah, E. T.; Simpson, M. J.

10.1101/186197 — cell biology — Posted on 2017-10-30

104 Blue light is a universal tactic signal for Escherichia coli

Perlova, T.; Gruebele, M.; Chemla, Y. R.

10.1101/211474 — biophysics — Posted on 2017-10-30

105 Mutualism between microbial populations in structured environments: the role of geometry in diffusive exchanges

Peaudecerf, F. J.; Bunbury, F.; Bhardwaj, V.; Bees, M. A.; Smith, A. G.; Goldstein, R. E.; Croze, O. A.

10.1101/172924 — biophysics — Posted on 2017-10-30

106 Whole Genomes Define Concordance of Matched Primary, Xenograft, and Organoid Models of Pancreas Cancer

Gendoo, D. M. A.; Denroche, R. E.; Zhang, A.; Jang, G. H.; Lemire, M.; Fischer, S.; Radulovich, N.; Chadwick, D.; Lungu, I. M.; Stein, L. D.; Wilson, J. M.; Bartlett, J. M. S.; Tsao, M.-S.; Dhani, N.; Hedley, D.; Gallinger, S.; Haibe-Kains, B.

10.1101/209692 — bioinformatics — Posted on 2017-10-30

107 Exploring the role of stimulus similarity on the summation effect in causal learning

Perez, O. D.; San Martin, R.; Soto, F. A.

10.1101/178954 — animal behavior and cognition — Posted on 2017-10-30

108 Cftr Modulates Wnt/β-Catenin Signaling and Stem Cell Proliferation in Murine Intestine

Strubberg, A. M.; Liu, J.; Walker, N. M.; Stefanski, C. D.; MacLeod, R. J.; Magness, S. T.; Clarke, L. L.

10.1101/156562 — physiology — Posted on 2017-10-30

109 Insight and Inference for DVARS

Afyouni, S.; Nichols, T. E.

10.1101/125021 — neuroscience — Posted on 2017-10-30

110 Deconvolution of Transcriptional Networks Identified TCF4 as a Master Regulator in Schizophrenia

Doostparast Torshizi, A.; Armoskus, C.; Zhang, S.; Zhang, H.; Evgrafov, O. V.; Knowles, J. A.; Duan, J.; Wang, K.

10.1101/133363 — neuroscience — Posted on 2017-10-30

111 Immuno-Detection by sequencing (ID-seq) enables large-scale high-dimensional phenotyping in cells.

van Buggenum, J. A.; Gerlach, J. P.; Tanis, S. E. J.; Hogeweg, M.; Middelwijk, J.; van der Steen, R.; Albers, C. A.; Mulder, K. W.

10.1101/158139 — genomics — Posted on 2017-10-30

112 Bacterial Colonization Stimulates A Complex Physiological Response In The Immature Human Intestinal Epithelium

Hill, D. R.; Huang, S.; Nagy, M. S.; Yadagiri, V. K.; Fields, C.; Mukherjee, D.; Bons, B.; Dedhia, P. H.; Chin, A. M.; Tsai, Y.-H.; Thodla, S.; Schmidt, T. M.; Walk, S.; Young, V. B.; Spence, J. R.

10.1101/144568 — developmental biology — Posted on 2017-10-30

113 Oncogenic addiction to high 26S proteasome levels

Tsvetkov, P.; Adler, J.; Myers, N.; Biran, A.; Reuven, N.; Shaul, Y.

10.1101/211300 — cancer biology — Posted on 2017-10-30

114 Expanding discovery from cancer genomes by integrating protein network analyses with in vivo tumorigenesis assays

Horn, H.; Lawrence, M. S.; Chouinard, C. R.; Shrestha, Y.; Xin Hu, J.; Worstell, E.; Shea, E.; Ilic, N.; Kim, E.; Kamburov, A.; Kashani, A.; Campbell, J. D.; Hahn, W. C.; Boehm, J. S.; Getz, G.; Lage, K.

10.1101/151977 — cancer biology — Posted on 2017-10-30

115 HiGlass: Web-based Visual Exploration and Analysis of Genome Interaction Maps

Kerpedjiev, P.; Abdennur, N.; Lekschas, F.; McCallum, C.; Dinkla, K.; Strobelt, H.; Luber, J. M.; Ouellette, S. B.; Azhir, A.; Kumar, N.; Hwang, J.; Lee, S.; Alver, B. H.; Pfister, H.; Mirny, L. A.; Park, P. J.; Gehlenborg, N.

10.1101/121889 — bioinformatics — Posted on 2017-10-30

116 Interplay between folding and binding modulates protein sequences, structures, functions and regulation

Meszaros, B.; Dobson, L.; Ficho, E.; Tusnady, G. E.; Dosztanyi, Z.; Simon, I.

10.1101/211524 — bioinformatics — Posted on 2017-10-30

117 Quantitative proteomic analysis of auxin signaling during seedling development

Kelley, D.; Shen, Z.; Walley, J. W.; Chapman, E. J.; Briggs, S. P.; Estelle, M.

10.1101/211532 — plant biology — Posted on 2017-10-30

118 The dynamics of human cognition: increasing global integration coupled with decreasing segregation found using iEEG

Cruzat, J.; Deco, G.; Tauste Campo, A.; Principe, A.; Costa, A.; Kringelbach, M. L.; Rocamora, R.

10.1101/089326 — neuroscience — Posted on 2017-10-30

119 The Evaluative Role of Rostrolateral Prefrontal Cortex in Rule-Based Category Learning

Paniukov, D.; Davis, T.

10.1101/107110 — neuroscience — Posted on 2017-10-30

120 Mmp10 is required for post-translational methylation of arginine at the active site of methyl-coenzyme M reductase

Lyu, Z.; Chou, C.-w.; Hao, S.; Patel, R.; Duin, E. C.; Whitman, W. B.

10.1101/211441 — microbiology — Posted on 2017-10-30

121 Assessing and characterising the repertoire of constitutive promoter elements in soil metagenomic libraries in Escherichia coli

Westmann, C. A.; Alves, L. d. F.; Silva-Rocha, R.; Guazzaroni, M.-E.

10.1101/211367 — microbiology — Posted on 2017-10-30

122 Contribution of structural and intronic mutations to RPGRIP1-mediated inherited retinal dystrophies.

Jamshidi, F.; Place, E. M.; Navarro-Gomez, D.; Maher, M.; Valkanas, E.; Lek, M.; MacArthur, D.; Bujakowska, K. M.; Pierce, E. A.

10.1101/211292 — genomics — Posted on 2017-10-30

123 ALKALs are in vivo ligands for ALK family Receptor Tyrosine Kinases in the neural crest and derived cells.

Fadeev, A.; Mendoza Garcia, P.; Irion, U.; Guan, J.; Pfeifer, K.; Wiessner, S.; Serluca, F.; Singh, A. P.; Nusslein-Volhard, C.; Palmer, R. H.

10.1101/210096 — developmental biology — Posted on 2017-10-30

124 Single-molecule tracking in live Yersinia enterocolitica reveals distinct cytosolic complexes of injectisome subunits

Rocha, J.; Richardson, C.; Zhang, M.; Darch, C.; Cai, E.; Diepold, A.; Gahlmann, A.

10.1101/211318 — biophysics — Posted on 2017-10-30

125 Functional reorganisation and recovery following cortical lesions: A study in macaque monkeys

Ainsworth, M.; Browncross, H.; Mitchell, D. J.; Mitchell, A. S.; Passingham, R. E.; Buckley, M. J.; Duncan, J.; Bell, A. H.

10.1101/202192 — neuroscience — Posted on 2017-10-30

126 A High-Resolution Probabilistic In Vivo Atlas of Human Subcortical Brain Nuclei

Pauli, W. M.; Nili, A. N.; Tyszka, J. M.

10.1101/211201 — neuroscience — Posted on 2017-10-30

127 Reproducibility and repeatability of six high-throughput 16S rDNA sequencing protocols for microbiota profiling

Raju, S.; Lagstrom, S.; Ellonen, P.; De Vos, W. M.; Eriksson, J.; Weiderpass, E.; Rounge, T. B.

10.1101/210880 — microbiology — Posted on 2017-10-30

128 Cross talk between photo-pigments and graphene electron cloud - Designing a biodiode

Ray, S.; Sen, S.; Das, A.; Bose, A.; Bhattacharya, A.; Das, A.; Chattopadhyay, S.; Patra, H.; Singha, S.; Singha, A.; Dasgupta, A. K.

10.1101/210609 — biophysics — Posted on 2017-10-30

129 Analysis Of The Genomic Basis Of Functional Diversity In Dinoflagellates Using A Transcriptome-Based Sequence Similarity Network

Meng, A.; Corre, E.; Probert, I.; Gutierrez-Rodriguez, A.; Siano, R.; Annamale, A.; Alberti, A.; Da Silva, C.; Wincker, P.; Le Crom, S.; Not, F.; Bittner, L.

10.1101/211243 — genomics — Posted on 2017-10-30

130 Underwater hyperspectral classification of deep sea corals exposed to a toxic compound

Letnes, P. A.; Hansen, I. M.; Aas, L. M.; Eide, I.; Pettersen, R.; Tassara, L.; Receveur, J.; le Floch, S.; Guyomarch, J.; Camus, L.; Bytingsvik, J.

10.1101/150060 — biochemistry — Posted on 2017-10-30

131 Evolutionary dynamics of bacteria in the gut microbiome within and across hosts

Garud, N. R.; Good, B. H.; Hallatschek, O.; Pollard, K. S.

10.1101/210955 — evolutionary biology — Posted on 2017-10-30

132 Functional segregation of the human basal forebrain using resting state neuroimaging

Markello, R.; Spreng, R. N.; Luh, W.-M.; Anderson, A. K.; De Rosa, E.

10.1101/211086 — neuroscience — Posted on 2017-10-30

133 Unsupervised discovery of demixed, low-dimensional neural dynamics across multiple timescales through tensor components analysis

Williams, A. H.; Kim, T. H.; Wang, F.; Vyas, S.; Ryu, S. I.; Shenoy, K. V.; Schnitzer, M.; Kolda, T. G.; Ganguli, S.

10.1101/211128 — neuroscience — Posted on 2017-10-30

134 Evidences for convergent evolution of host parasitic manipulation in response to environmental conditions

Loreto, R. G.; Araujo, J. P. M.; Kepler, R. M.; Fleming, K. R.; Moreau, C. S.; Hughes, D. P.

10.1101/211144 — evolutionary biology — Posted on 2017-10-30

135 Antiferromagnetic switch in serum

Raja, S. O.; Chatterjee, S.; Dasgupta, A. K.

10.1101/211102 — biophysics — Posted on 2017-10-30

136 Linked-read analysis identifies mutations in single-cell DNA sequencing data

Bohrson, C. L.; Barton, A. R.; Lodato, M. A.; Rodin, R. E.; Viswanadham, V.; Gulhan, D.; Cortes, I.; Sherman, M. A.; Luquette, L. J.; Kwon, M.; Coulter, M. E.; Walsh, C. A.; Park, P. J.

10.1101/211169 — bioinformatics — Posted on 2017-10-30

137 Dark selection for JAK/STAT-inhibitor resistance in chronic myelomonocytic leukemia

Kaznatcheev, A.; Grimes, D. R.; Vander Velde, R.; Cannataro, V. L.; Baratchart, E.; Dhawan, A.; Liu, L.; Myroshnychenko, D.; Taylor-King, J. P.; Yoon, N.; Padron, E.; Marusyk, A.; Basanta, D.

10.1101/211151 — cancer biology — Posted on 2017-10-30

138 A state representation for reinforcement learning and decision-making in the orbitofrontal cortex

Schuck, N. W.; Wilson, R. C.; Niv, Y.

10.1101/210591 — neuroscience — Posted on 2017-10-29

139 Active deep learning reduces annotation burden in automatic cell segmentation

Chowdhury, A.; Bianco, S.; Biswas, S.

10.1101/211060 — bioinformatics — Posted on 2017-10-29

140 Bioassay of derived components from venom of Iranian medically important scorpions to identify the bradykinin potentiating factors

Goudarzi, H. R.; Nazari Shirvan, A.; Noofeli, M.; Samianifard, M.

10.1101/210856 — pharmacology and toxicology — Posted on 2017-10-29

141 White matter differences in Parkinson’s disease mapped using tractometry

Corbin, C.; Gupta, V.; Villalon-Reina, J. E.; Nir, T. M.; Rashid, F. M.; Thomopoulos, S. I.; Jahanshad, N.; Thompson, P. M.

10.1101/209858 — neuroscience — Posted on 2017-10-29

142 Sequence Transfer Learning for Neural Decoding

Elango, V.; Patel, A. N.; Miller, K. J.; Gilja, V.

10.1101/210732 — neuroscience — Posted on 2017-10-29

143 Microglial elimination of dopamine D1 receptors defines sex-specific changes in nucleus accumbens development and social play behavior during adolescence

Kopec, A.; Smith, C. J.; Ayre, N. R.; Sweat, S. C.; Bilbo, S. D.

10.1101/211029 — neuroscience — Posted on 2017-10-29

144 FiberNet 2.0: An Automatic Neural Network Based Tool for Clustering White Matter Fibers in the Brain

Gupta, V.; Thomopoulos, S. I.; Corbin, C.; Rashid, F. M.; Thompson, P. M.

10.1101/210781 — neuroscience — Posted on 2017-10-29

145 Molecular identification of stone loaches of Choman River system, Tigris Basin, based on the Cytochrome b gene with an overview of the Cobitoidea Superfamily

Ghaderi, E.; Farahmand, H.; Bahrami Kamangar, B.; Nematollahi, M. A.

10.1101/210963 — molecular biology — Posted on 2017-10-29

146 Listeria monocytogenes virulence factors are secreted in biologically active Extracellular Vesicles

Coelho, C.; Brown, L.; Maryam, M.; Burnet, M. C.; Kyle, J. E.; Heyman, H. M.; Prados-Rosales, R.; Lauvau, G.; Nakayasu, E. S.; Brady, N. R.; Brady, A.; Coppens, I.; Casadevall, A.

10.1101/210906 — microbiology — Posted on 2017-10-29

147 A study of allelic series using transcriptomic phenotypes in a metazoan

Angeles-Albores, D.; Sternberg, P.

10.1101/210724 — genetics — Posted on 2017-10-29

148 Distinct ‘safe zones’ at the nuclear envelope ensure robust replication of heterochromatic chromosome regions

Ebrahimi, H.; Masuda, H.; Jain, D.; Cooper, J. P.

10.1101/210815 — genetics — Posted on 2017-10-29

149 Ift172 conditional knockout mice exhibit rapid retinal degeneration and protein trafficking defects

Gupta, P. R.; Pendse, N.; Greenwald, S. H.; Leon, M.; Liu, Q.; Pierce, E. A.; Bujakowska, K. M.

10.1101/210617 — genetics — Posted on 2017-10-29

150 A microbial perspective on the life-history evolution of marine invertebrate larvae: if, where, and when to feed

Carrier, T. J.; Macrander, J.; Reitzel, A.

10.1101/210989 — evolutionary biology — Posted on 2017-10-29

151 Heritable plant phenotypes track light and herbivory levels at fine spatial scales

Humphrey, P.; Gloss, A. D.; Frazier, J.; Nelson-Dittrich, A. C.; Faries, S.; Whiteman, N. K.

10.1101/210765 — ecology — Posted on 2017-10-29

152 Contextual Regression: An Accurate and Conveniently Interpretable Nonlinear Model for Mining Discovery from Scientific Data

Liu, C.; Wang, W.

10.1101/210997 — bioinformatics — Posted on 2017-10-29

153 ACEseq - allele specific copy number estimation from whole genome sequencing

Kleinheinz, K.; Bludau, I.; Huebschmann, D.; Heinold, M.; Kensche, P.; Gu, Z.; Lopez, C.; Hummel, M.; Klapper, W.; Moeller, P.; Vater, I.; Wagener, R.; ICGC MMML-Seq project, ; Brors, B.; Siebert, R.; Eils, R.; Schlesner, M.

10.1101/210807 — bioinformatics — Posted on 2017-10-29

154 Identification and prioritisation of causal variants in human genetic disorders from exome or whole genome sequencing data

Paramasivam, N.; Granzow, M.; Evers, C.; Hinderhofer, K.; Wiemann, S.; Bartram, C. R.; Eils, R.; Schlesner, M.

10.1101/209882 — bioinformatics — Posted on 2017-10-29

155 Targeted deletion of Nmnat1 in mouse retina leads to early severe retinal dystrophy

Wang, X.; Fang, Y.; Liao, R.; Wang, T.

10.1101/210757 — developmental biology — Posted on 2017-10-29

156 Forced-rupture of Cell-Adhesion Complexes Reveals abrupt switch between two Brittle States

Toan, N. M.; Thirumalai, D.

10.1101/211045 — biophysics — Posted on 2017-10-29

157 Auxiliary ATP binding sites power rapid unwinding by RecBCD

Zananiri, R.; Gaydar, V.; Yahalom, D.; Malik, O.; Rudnizky, S.; Kaplan, A.; Henn, A.

10.1101/210823 — biophysics — Posted on 2017-10-29

158 Rapid Agrobacterium-mediated transformation of tobacco cotyledons using toothpicks

Yau, Y.-Y.; Easterling, M.; Brennan, L.

10.1101/204891 — plant biology — Posted on 2017-10-29

159 A 20S proteasome receptor for degradation of intrinsically disordered proteins

Biran, A.; Myers, N.; Adler, J.; Broennimann, K.; Reuven, N.; Shaul, Y.

10.1101/210898 — molecular biology — Posted on 2017-10-29

160 Insights into Origin and Evolution of α-proteobacterial Gene Transfer Agents

Shakya, M.; Soucy, S. M.; Zhaxybayeva, O.

10.1101/189738 — evolutionary biology — Posted on 2017-10-29

161 Development of migrating entheses involves replacement of progenitor populations

Felsenthal, N.; Rubin, S.; Stern, T.; Krief, S.; Pal, D.; Pryce, B. A.; Schweitzer, R.; Zelzer, E.

10.1101/210799 — developmental biology — Posted on 2017-10-29

162 Single-cell transcriptional regulations and accessible chromatin landscape of cell fate decisions in early heart development

Jia, G.; Preussner, J.; Guenther, S.; Yuan, X.; Yekelchyk, M.; Kuenne, C.; Looso, M.; Zhou, Y.; Braun, T.

10.1101/210930 — developmental biology — Posted on 2017-10-29

163 Chromatin histone modifications and rigidity affect nuclear morphology independent of lamins

Stephens, A. D.; Liu, P. Z.; Banigan, E. J.; Almassalha, L. M.; Backman, V.; Adam, S. A.; Goldman, R.; Marko, J.

10.1101/206367 — cell biology — Posted on 2017-10-29

164 Hijacking of Multiple Phospholipid Biosynthetic Pathways and Induction of Membrane Biogenesis by a Picornaviral 3CD Protein

Banerjee, S.; Aponte-Diaz, D.; Yeager, C.; Sharma, S. D.; Oh, H. S.; Han, Q.; Hara, Y.; Umeda, M.; Wang, R. Y. L.; Cameron, C. E.

10.1101/210708 — biochemistry — Posted on 2017-10-29

165 Tandem histone-binding domains enhance the activity of a synthetic chromatin effector

Tekel, S. J.; Vargas, D. A.; Song, L.; LaBaer, J.; Haynes, K. A.

10.1101/145730 — synthetic biology — Posted on 2017-10-29

166 Dynamics of brain activity reveal a unitary recognition signal

Weidemann, C. T.; Kahana, M. J.

10.1101/165225 — neuroscience — Posted on 2017-10-29

167 Single synapses control mossy cell firing

Drakew, A.; Maier, U.; Tippmann, A.; Frotscher, M.

10.1101/188789 — neuroscience — Posted on 2017-10-29

168 Stratified Linkage Disequilibrium Score Regression reveals enrichment of eQTL effects on complex traits is not tissue specific

Ip, H.; Jansen, R.; Abdellaoui, A.; Bartels, M.; UK Brain Expression Consortium, ; Boomsma, D. I.; Nivard, M. G.

10.1101/107482 — genomics — Posted on 2017-10-29

169 A Doubly Stochastic Change Point Detection Algorithm for Noisy Biological Signals

Gold, N.; Frasch, M. G.; Herry, C.; Richardson, B. S.; Wang, X.

10.1101/106088 — bioinformatics — Posted on 2017-10-29

170 runibic: a Bioconductor package for parallel row-based biclustering of gene expression data

Orzechowski, P.; Panszczyk, A.; Huang, X.; Moore, J. H.

10.1101/210682 — bioinformatics — Posted on 2017-10-28

171 Bayesian Confidence Intervals for Multiplexed Proteomics Integrate Ion-Statistics with Peptide Quantification Concordance

Peshkin, L.; Ryazanova, L.; Wuhr, M.

10.1101/210476 — systems biology — Posted on 2017-10-28

172 Machine-assisted cultivation and analysis of biofilms

Hansen, S. H.; Kabbeck, T.; Radtke, C. P.; Krause, S.; Krolitzki, E.; Peschke, T.; Gasmi, J.; Rabe, K. S.; Wagner, M.; Horn, H.; Hubbuch, J.; Gescher, J.; Niemeyer, C. M.

10.1101/210583 — microbiology — Posted on 2017-10-28

173 Quantifying the ease of viral escape from broad and narrow antibodies to influenza hemagglutinin

Doud, M. B.; Lee, J. M.; Bloom, J. D.

10.1101/210468 — microbiology — Posted on 2017-10-28

174 Rolling a mycobiome down a hill: endophytes in the Taiwanese Cloud Forest

Thomas, D.; Vandegrift, R.; Ju, Y.-M.; Hsieh, H. M.; Roy, B. A.

10.1101/210641 — microbiology — Posted on 2017-10-28

175 Genomic characterisation and conservation genetics of the indigenous Irish Kerry cattle breed

Browett, S.; McHugo, G.; Richardson, I. W.; Magee, D. A.; Park, S. D. E.; Fahey, A. G.; Kearney, J. F.; Correia, C. N.; Randhawa, I.; MacHugh, D. E.

10.1101/210229 — genomics — Posted on 2017-10-28

176 Accelerated Epigenetic Ageing in Major Depressive Disorder

Whalley, H. C.; Gibson, J.; Marioni, R.; Walker, R. M.; Clarke, T.-K.; Howard, D. M.; Adams, M. J.; Hall, L.; Morris, S.; Deary, I. J.; Porteous, D.; 23andMe Rsearch Team, ; Major Depressive Disorder Working Group of the Psy, ; Evans, K. L.; McIntosh, A. M.

10.1101/210666 — genomics — Posted on 2017-10-28

177 Sharing genetic admixture and diversity of public biomedical datasets

Harismendy, O.; Kim, J.; Xu, X.; Ohno-Machado, L.

10.1101/210716 — genetics — Posted on 2017-10-28

178 Neurodevelopmental disease genes implicated by de novo mutation and CNV morbidity

Coe, B. P.; Stessman, H. A. F.; Sulovari, A.; Geisheker, M.; Hormozdiari, F.; Eichler, E. E.

10.1101/209908 — genetics — Posted on 2017-10-28

179 Forest Dormouse (Dryomys nitedula) populations in southern Italy belong to a deeply divergent evolutionary lineage

Bisconti, R.; Aloise, G.; Siclari, A.; Fava, V.; Provenzano, M.; Chiocchio, A.; Nascetti, G.; Canestrelli, D.

10.1101/210070 — evolutionary biology — Posted on 2017-10-28

180 Bursts of amino acid replacements in protein evolution

Stolyarova, A. V.; Neretina, T. V.; Bazykin, G. A.; Kondrashov, A. S.

10.1101/210211 — evolutionary biology — Posted on 2017-10-28

181 Stochastic character mapping of state-dependent diversification reveals the tempo of evolutionary decline in self-compatible lineages

Freyman, W.; Hoehna, S.

10.1101/210484 — evolutionary biology — Posted on 2017-10-28

182 Effects of Spatial Heterogeneity on Transmission Potential in Vectorial-Contact Networks: A Comparison of Three Aedes aegypti Control Strategies

Sanchez C., H. M.; Marshall, J. M.; Wu, S. L.; Vallejo, E. E.

10.1101/210450 — bioinformatics — Posted on 2017-10-28

183 Combinatorial Drug Discovery in Nanoliter Droplets

Kulesa, A.; Kehe, J.; Hurtado, J.; Tawde, P.; Blainey, P. C.

10.1101/210492 — bioengineering — Posted on 2017-10-28

184 A Real-Time Double Error Correction Model of Associative Learning

Kokkola, N. H. B.; Mondragon, E.; Alonso, E.

10.1101/210674 — animal behavior and cognition — Posted on 2017-10-28

185 The Association of Externalizing and Internalizing Problems with Indicators of Intelligence in a Sample of At-Risk Children

Boutwell, B. B.; Helton, J.; Vaughn, M.; Kavish, N.

10.1101/210500 — neuroscience — Posted on 2017-10-28

186 An empirical test of the temperature dependence of carrying capacity

Bernhardt, J.; Sunday, J. M.; O'Connor, M. I.

10.1101/210690 — ecology — Posted on 2017-10-28

187 A conserved maternal-specific repressive domain in Zelda revealed by Cas9-mediated mutagenesis in Drosophila melanogaster

Hamm, D. C.; Larson, E. D.; Nevil, M.; Marshall, K. E.; Bondra, E. R.; Harrison, M. M.

10.1101/210187 — developmental biology — Posted on 2017-10-28

188 Automated microuidic cell culture of stem cell derived dopaminergic neurons in Parkinson’s disease

Kane, K. I. W.; Lucumi Moreno, E.; Hachi, S.; Walter, M.; Jarazo, J.; Hankemeier, T.; Vulto, P.; Schwamborn, J.; Thoma, M.; Fleming, R. M. T.

10.1101/209957 — bioengineering — Posted on 2017-10-28

189 In vivo RNA targeting of point mutations via suppressor tRNAs and adenosine deaminases

Katrekar, D.; Mali, P.

10.1101/210278 — synthetic biology — Posted on 2017-10-28

190 Integration of visual information in auditory cortex promotes auditory scene analysis through multisensory binding

Atilgan, H.; Town, S.; Wood, K.; Jones, G.; Maddox, R.; Lee, A.; Bizley, J. K.

10.1101/098798 — neuroscience — Posted on 2017-10-28

191 Errors in action timing and inhibition facilitate learning by tuning distinct mechanisms in the underlying decision process

Dunovan, K.; Verstynen, T.

10.1101/153676 — neuroscience — Posted on 2017-10-28

192 microRNA tissue atlas of the malaria mosquito Anopheles gambiae

Lampe, L.; Levashina, E. A.

10.1101/177964 — genomics — Posted on 2017-10-28

193 Allosteric activation dictates PRC2 activity independent of its recruitment to chromatin

Lee, C.-H.; Yu, J.-R.; Kumar, S.; Jin, Y.; Kaneko, S.; Hamilton, A. D.; Reinberg, D.

10.1101/206383 — biochemistry — Posted on 2017-10-28

194 A small subset of NLR genes drives local adaptation to pathogens in wild tomato

Stam, R.; Silva-Arias, G. A.; Nosenko, T.; Scheikl, D.; Hörger, A. C.; Stephan, W.; Haberer, G.; Tellier, A.

10.1101/210559 — evolutionary biology — Posted on 2017-10-28

195 Distinct stimulatory mechanisms regulate the catalytic activity of Polycomb Repressive Complex 2 (PRC2)

Lee, C.-H.; Holder, M.; Grau, D.; Saldana-Meyer, R.; Ganai, R. A.; Zhang, J.; Wang, M.; Dobenecker, M.-W.; Reinberg, D.; Armache, K.-J.

10.1101/210542 — biochemistry — Posted on 2017-10-28

196 The Multivariate Normal Distribution Framework for Analyzing Association Studies

Lozano, J. A.; Hormozdiari, F.; Joo, J. W.; Han, B.; Eskin, E.

10.1101/208199 — genetics — Posted on 2017-10-28

197 Hydraulic constraints of reproduction do not explain sexual dimorphism in the genus Leucadendron (Proteaceae)

Roddy, A.; van Blerk, J. J.; Midgley, J. J.; West, A. G.

10.1101/209460 — ecology — Posted on 2017-10-28

198 Applications of community detection techniques to brain graphs: Algorithmic considerations and implications for neural function

Garcia, J. O.; Ashourvan, A.; Muldoon, S.; Vettel, J. M.; Bassett, D. S.

10.1101/209429 — neuroscience — Posted on 2017-10-28

199 Global transcriptome analysis of Aedes aegypti mosquitoes in response to Zika virus infection

Etebari, K.; Hegde, S.; Saldana, M. A.; Widen, S. G.; Wood, T. G.; Asgari, S.; Hughes, G. L.

10.1101/179416 — microbiology — Posted on 2017-10-27

200 RACIPE: A computational tool for Modeling Gene Regulatory Circuits using Randomization

Huang, B.; Jia, D.; Feng, J.; Levine, H.; Onuchic, J. N.; Lu, M.

10.1101/210419 — systems biology — Posted on 2017-10-27

201 Combinatorial effect of promoter activity, mRNA degradation and site-specific transcriptional pausing in modulating protein expression noise

Kim, S.; Jacobs-Wagner, C.

10.1101/210401 — systems biology — Posted on 2017-10-27

202 Growth hormone transgenesis disrupts immune function in muscle of coho salmon (Oncorhynchus kisutch) impacting cross-talk with growth systems

Alzaid, A.; Kim, J.-H.; Devlin, R.; Martin, S.; Macqueen, D.

10.1101/210104 — physiology — Posted on 2017-10-27

203 Prophylactic vaccination protects against the development of oxycodone addiction

Nguyen, J. D.; Hwang, C. S.; Grant, Y.; Janda, K. D.; Taffe, M. A.

10.1101/210369 — neuroscience — Posted on 2017-10-27

204 Network supporting contextual fear learning after hippocampal damage has increased dependence on retrosplenial cortex

Coelho, C. A. O.; Ferreira, T. L.; Soares, J. C. K.; Sato, J. R.; Oliveira, M. G. M.

10.1101/209866 — neuroscience — Posted on 2017-10-27

205 DNA lesions proximity modulates damage tolerance pathways

Chrabaszcz, E.; Laureti, L.; Pages, V.

10.1101/210237 — molecular biology — Posted on 2017-10-27

206 Variation in gut microbiota composition impacts host gene expression

Richards, A.; Muehlbauer, A. L.; Alazizi, A.; Burns, M. B.; Gould, T. J.; Cascardo, C.; Pique-Regi, R.; Blekhman, R.; Luca, F.

10.1101/210294 — genomics — Posted on 2017-10-27

207 Summarizing Performance for Genome Scale Measurement of miRNA: Reference Samples and Metrics

Pine, P. S.; Lund, S. P.; Parsons, J. R.; Vang, L. K.; Mahabal, A. A.; Cinquini, L.; Kelly, S. C.; Kincaid, H.; Crichton, D. J.; Spira, A.; Liu, G.; Gower, A. C.; Pass, H. I.; Goparaju, C.; Dubinett, S. M.; Krysan, K.; Stass, S. A.; Kukuruga, D.; Van Keuren-Jensen, K.; Courtright-Lim, A.; Thompson, K. L.; Rosenzweig, B. A.; Sorbara, L.; Srivastava, S.; Salit, M. L.

10.1101/210310 — genomics — Posted on 2017-10-27

208 Large-scale phenome-wide association study of PCSK9 loss-of-function variants demonstrates protection against ischemic stroke

Rao, A. S.; Lindholm, D.; Rivas, M. A.; Knowles, J. W.; Montgomery, S. B.; Ingelsson, E.

10.1101/210302 — genetics — Posted on 2017-10-27

209 Lineage specific histories of Mycobacterium tuberculosis dispersal in Africa and Eurasia

O'Neill, M. B.; Kitchen, A.; Zarley, A.; Aylward, W.; Eldholm, V.; Pepperell, C. S.

10.1101/210161 — evolutionary biology — Posted on 2017-10-27

210 Comparative Analysis of Gene Expression Identifies Distinct Molecular Signatures of Bone Marrow- and Periosteal-Skeletal Stem/Progenitor Cells

Deveza, L.; Lei, K.; Ortinau, L.; Park, D.

10.1101/210435 — cell biology — Posted on 2017-10-27

211 Accounting for Apparent Deviations between Calorimetric and van’t Hoff Enthalpies

Kantonen, S. A.; Henriksen, N. M.; Gilson, M. K.

10.1101/210351 — biophysics — Posted on 2017-10-27

212 Redundancy principle for optimal random search in biology

Schuss, Z.; Basnayake, K.; Holcman, D.

10.1101/210443 — biophysics — Posted on 2017-10-27

213 A novel domain assembly routine for creating full-length models of membrane proteins from known domain structures

Koehler Leman, J.; Bonneau, R.

10.1101/209213 — biophysics — Posted on 2017-10-27

214 Effects of Force Fields on the Conformational and Dynamic Properties of Amyloid β(1-40) Dimer Explored by Replica Exchange Molecular Dynamics Simulations

Watts, C. R.; Gregory, A.; Frisbie, C.; Lovas, S.

10.1101/210286 — biophysics — Posted on 2017-10-27

215 Computational Tools for the Identification and Interpretation of Sequence Motifs in Immunopeptidomes

Alvarez, B.; Barra, C.; Nielsen, M.; Andreatta, M.

10.1101/210336 — bioinformatics — Posted on 2017-10-27

216 Deep-RBPPred: Predicting RNA binding proteins in the proteome scale based on deep learning

Zheng, J.; Zhang, X.; Zhao, X.; Tong, X.; Hong, X.; Xie, J.; Liu, S.

10.1101/210153 — bioinformatics — Posted on 2017-10-27

217 Variation in context dependent foraging behavior across pollinators

Briggs, H. M.; Graham, S.; Switzer, C.; Hopkins, R.

10.1101/210377 — animal behavior and cognition — Posted on 2017-10-27

218 Enhanced Astrocyte Responses are Driven by a Genetic Risk Allele Associated with Multiple Sclerosis

Ponath, G.; Lincoln, M. R.; Dahlawi, S.; Mubarak, M.; Sumida, T.; Airas, L.; Zhang, S.; Isitan, C.; Nguyen, T. D.; Raine, C. S.; Hafler, D. A.; Pitt, D.

10.1101/206110 — neuroscience — Posted on 2017-10-27

219 Molecular insights into the pathways underlying naked mole-rat eusociality

Mulugeta, E.; Marion-Poll, L.; Gentien, D.; Ganswindt, S. B.; Ganswindt, A.; Bennett, N. C.; Blackburn, E. H.; Faulkes, C. G.; Heard, E.

10.1101/209932 — neuroscience — Posted on 2017-10-27

220 Restriction of dietary protein leads to conditioned protein preference and elevated palatability of protein-containing food in rats.

Murphy, M.; Peters, K. Z.; Denton, B. S.; Lee, K. A.; Chadchankar, H.; McCutcheon, J. E.

10.1101/210146 — neuroscience — Posted on 2017-10-27

221 Rapid high-resolution measurement of DNA replication timing by droplet digital PCR

Batrakou, D. G.; Heron, E. D.; Nieduszynski, C. A.

10.1101/208546 — molecular biology — Posted on 2017-10-27

222 Gene-expression profiling of single cells from archival tissue with laser-capture microdissection and Smart-3SEQ

Foley, J. W.; Zhu, C.; Jolivet, P.; Zhu, S. X.; Lu, P.; Meaney, M. J.; West, R. B.

10.1101/207340 — genomics — Posted on 2017-10-27

223 A critical re-evaluation of multilocus sequence typing (MLST) efforts in Wolbachia

Bleidorn, C.; Gerth, M.

10.1101/133710 — evolutionary biology — Posted on 2017-10-27

224 An evolutionary switch in the specificity of an endosomal CORVET tether underlies formation of regulated secretory vesicles in the ciliate Tetrahymena thermophila

Sparvoli, D.; Richardson, E.; Osakada, H.; Lan, X.; Iwamoto, M.; Bowman, G. R.; Kontur, C.; Bourland, W. A.; Lynn, D. H.; Pritchard, J. K.; Haraguchi, T.; Dacks, J. B.; Turkewitz, A. P.

10.1101/210328 — cell biology — Posted on 2017-10-27

225 Distinct features of multivesicular body-lysosome fusion revealed by a new cell-free content-mixing assay

Karim, M. A.; Samyn, D. R.; Mattie, S.; Brett, C. L.

10.1101/133074 — cell biology — Posted on 2017-10-27

226 Knowledge of the Neighborhood of the Reactive Site up to Three Atoms Can Predict Biochemistry and Protein Sequences

Hadadi, N.; MohamadiPeyhani, H.; Miskovic, L.; Seijo, M.; Hatzimanikatis, V.

10.1101/210039 — bioinformatics — Posted on 2017-10-27

227 Optical excitation and detection of neuronal activity

Hu, C.; Sam, R.; Shan, M.; Nastasa, V.; Wang, M.; Kim, T.; Gillette, M.; Sengupta, P.; Popescu, G.

10.1101/209759 — bioengineering — Posted on 2017-10-27

228 In vivo RNA targeting of point mutations via suppressor tRNAs and adenosine deaminases

Katrekar, D.; Mali, P.

10.1101/210278 — synthetic biology — Posted on 2017-10-27

229 Multi-modal brain fingerprinting: a manifold approximation based framework

Kumar, K.; Chauvin, L.; Toews, M.; Colliot, O.; Desrosiers, C.

10.1101/209726 — neuroscience — Posted on 2017-10-27

230 The Spectral Fingerprint of Sleep Problems in Post-Traumatic Stress Disorder

de Boer, M.; Nijdam, M. J.; Jongedijk, R. A.; Olff, M.; Hofman, W. F.; Talamini, L. M.

10.1101/209452 — neuroscience — Posted on 2017-10-27

231 Beyond Bilingualism: multilingual experience correlates with caudate volume

Hervais-Adelman, A.; Egorova, N.; Golestani, N.

10.1101/209619 — neuroscience — Posted on 2017-10-27

232 The evolution of the temporal program of genome replication

Agier, N.; Delmas, S.; Zhang, Q.; Fleiss, A.; Jaszczyszyn, Y.; van Dijk, E.; Thermes, C.; Weigt, M.; Cosentino-Lagomarsino, M.; Fischer, G.

10.1101/210252 — evolutionary biology — Posted on 2017-10-27

233 Longitudinal Analysis of Particulate Air Pollutants and Adolescent Delinquent Behavior in Southern California

Younan, D.; Tuvblad, C.; Franklin, M.; Lurmann, F.; Li, L.; Wu, J.; Berhane, K.; Baker, L. A.; Chen, J.-C.

10.1101/208793 — epidemiology — Posted on 2017-10-27

234 Heritability of hierarchical structural brain network

Chung, M.; Luo, Z.; Luo, Z.; Adluru, N.; Richard, D.; Goldsmith, H. H.

10.1101/209635 — neuroscience — Posted on 2017-10-27

235 The relationship between spatial configuration and functional connectivity of brain regions

Bijsterbosch, J. D.; Woolrich, M. W.; Glasser, M. F.; Robinson, E. C.; Beckmann, C. F.; Van Essen, D. C.; Harrison, S. J.; Smith, S. M.

10.1101/210195 — neuroscience — Posted on 2017-10-27

236 Vulnerabilities of transcriptome-wide association studies

Wainberg, M.; Sinnott-Armstrong, N.; Knowles, D.; Golan, D.; Ermel, R.; Ruusalepp, A.; Quertermous, T.; Hao, K.; Bjorkegren, J. L. M.; Rivas, M. A.; Kundaje, A.

10.1101/206961 — genetics — Posted on 2017-10-27

237 Non-competitive resource exploitation within-mosquito shapes evolution of malaria virulence

Costa, G.; Gildenhard, M.; Eldering, M.; Lindquist, R. L.; Hauser, A. E.; Sauerwein, R.; Goosmann, C.; Brinkmann, V.; Levashina, E. A.

10.1101/149443 — evolutionary biology — Posted on 2017-10-27

238 The Chromosomal Basis of Species Initiation: Prdm9 as an Anti-Speciation Gene

Forsdyke, D. R.

10.1101/170860 — evolutionary biology — Posted on 2017-10-27

239 A modeling of a Diphtheria epidemic in the refugees camps

Torrea, M.; Ortega, D.; Torrea, J. L.

10.1101/208835 — epidemiology — Posted on 2017-10-27

240 Dengue modeling in rural Cambodia: statistical performance versus epidemiological relevance

Champagne, C.; Paul, R.; Ly, S.; Duong, V.; Leang, R.; Cazelles, B.

10.1101/208876 — epidemiology — Posted on 2017-10-27

241 Genotype fingerprints enable fast and private comparison of genetic testing results for research and direct-to-consumer applications

Robinson, M.; Glusman, G.

10.1101/208025 — bioinformatics — Posted on 2017-10-27

242 Robustness encoded across essential and accessory replicons in an ecologically versatile bacterium

diCenzo, G. C.; Benedict, A. B.; Fondi, M.; Walker, G. C.; Finan, T. M.; Mengoni, A.; Griffitts, J. S.

10.1101/209916 — systems biology — Posted on 2017-10-27

243 Structural robustness of mammalian transcription factor networks reveals plasticity across development

Caldu-Primo, J. L.; Alvarez-Buylla, E.; Davila-Velderrain, J.

10.1101/209528 — systems biology — Posted on 2017-10-27

244 Hypoxia in the grape berry linked to mesocarp cell death: the role of seed respiration and lenticels on the berry pedicel

Xiao, Z.; Rogiers, S.; Sadras, V.; Tyerman, S.

10.1101/209890 — plant biology — Posted on 2017-10-27

245 A self-organizing memory network

Federer, C.; Zylberberg, J.

10.1101/144683 — neuroscience — Posted on 2017-10-27

246 DiscoSnp++: de novo detection of small variants from raw unassembled read set(s)

Peterlongo, P.; Riou, C.; Drezen, E.; Lemaitre, C.

10.1101/209965 — bioinformatics — Posted on 2017-10-27

247 Insular Cortex Mediates Approach And Avoidance Responses To Social Affective Stimuli

Rogers-Carter, M. M.; Varela, J.; Gribbons, K. B.; Pierce, A. F.; McGoey, M. T.; Ritchey, M.; Christianson, J. P.

10.1101/108506 — neuroscience — Posted on 2017-10-27

248 Draft genomes of the fungal pathogen Phellinus noxius in Hong Kong

Tsang, K. S. W.; Lam, R. Y. C.; Kwan, H. S.

10.1101/209312 — genomics — Posted on 2017-10-27

249 An evolutionarily conserved leucine zipper-like motif accounts for strong tetramerization capabilities of SEPALLATA-like MADS-domain transcription factors controlling flower development

Ruempler, F.; Theissen, G.; Melzer, R.

10.1101/125294 — plant biology — Posted on 2017-10-27

250 Midfrontal theta and pupil dilation parametrically track subjective conflict (but also surprise) during intertemporal choice

Lin, H.; Saunders, B.; Hutcherson, C. A.; Inzlicht, M.

10.1101/172122 — neuroscience — Posted on 2017-10-27

251 CXCR4-associated depletion of bone marrow CD34+ cells following CCR5-tropic HIV-1 infection of humanized NOD/SCID/JAK3null mice and partial protection of those cells by a promotor-targeting shRNA

Tsukamoto, T.

10.1101/190702 — microbiology — Posted on 2017-10-27

252 Kin competition accelerates experimental range expansion in an arthropod herbivore

Van Petegem, K. H. P.; Moerman, F.; Dahirel, M.; Fronhofer, E. A.; Vandegehuchte, M.; Van Leeuwen, T.; Wybouw, N.; Stoks, R.; Bonte, D.

10.1101/150011 — ecology — Posted on 2017-10-27

253 A network modeling approach to elucidate drug resistance mechanisms and predict combinatorial drug treatments in breast cancer

Gomez Tejeda Zanudo, J.; Albert, R.

10.1101/176214 — cancer biology — Posted on 2017-10-27

254 Assessment of batch-correction methods for scRNA-seq data with a new test metric

Buttner, M.; Miao, Z.; Wolf, A.; Teichmann, S. A.; Theis, F. J.

10.1101/200345 — bioinformatics — Posted on 2017-10-27

255 Bioconda: A sustainable and comprehensive software distribution for the life sciences

Grüning, B.; Dale, R.; Sjödin, A.; Rowe, J.; Chapman, B. A.; Tomkins-Tinch, C. H.; Valieris, R.; The Bioconda Team, ; Köster, J.

10.1101/207092 — bioinformatics — Posted on 2017-10-27

256 In vivo cross-linking and transmembrane helix dynamics support a non-piston model of signaling within E. coli EnvZ

Yusuf, R.; Nguyen, T. L.; Heininger, A.; Lawrence, R. J.; Hall, B. A.; Draheim, R. R.

10.1101/206888 — biochemistry — Posted on 2017-10-27

257 Evolution of cold acclimation in temperate grasses (Pooideae)

Schubert, M.; Groenvold, L.; Sandve, S. R.; Hvidsten, T. R.; Fjellheim, S.

10.1101/210021 — evolutionary biology — Posted on 2017-10-27

258 Fossilized Microbial Forms in Baltic and Goan Amber - A Comparative Pioneer Study

Dabolkar, S.; Kamat, N.

10.1101/209973 — evolutionary biology — Posted on 2017-10-27

259 Subsurface Zircons With Presumptive "Biogenic" Inclusions As Potentially Useful Proxies For Studying Precambrian Bygone Biospheres In Goa

Dabolkar, S.; Kamat, N.

10.1101/210013 — evolutionary biology — Posted on 2017-10-27

260 Modeling the growth and decline of pathogen effective population size provides insight into epidemic dynamics and drivers of antimicrobial resistance

Volz, E. M.; Didelot, X.

10.1101/210054 — evolutionary biology — Posted on 2017-10-27

261 Partial selfing eliminates inbreeding depression while maintaining genetic diversity

Chelo, I. M.; Afonso, B.; Carvalho, S.; Theologidis, I.; Goy, C.; Pino-Querido, A.; Proulx, S. R.; Teotonio, H.

10.1101/210005 — evolutionary biology — Posted on 2017-10-27

262 The population genetics of spatial sorting

Phillips, B.; Perkins, A.

10.1101/210088 — evolutionary biology — Posted on 2017-10-27

263 The self-organization of plant microtubules in three dimensions enables stable cortical localization and sensitivity to external cues

Mirabet, V.; Krupinski, P.; Hamant, O.; Meyerowitz, E.; Jonsson, H.; Boudaoud, A.

10.1101/210138 — cell biology — Posted on 2017-10-27

264 Probabilistic Graphical Models Relate Immune Status With Response To Neoadjuvant Chemo-Therapy In Breast Cancer

Zapater-Moros, A.; Gamez-Pozo, A.; Prado-Vazquez, G.; Trilla-Fuertes, L.; Arevalillo, J. M.; Diaz-Almiron, M.; Navarro, H.; Main, P.; Feliu, J.; Zamora, P.; Espinosa, E.; Fresno Vara, J. A.

10.1101/210112 — cancer biology — Posted on 2017-10-27

265 Capitalizing on Competition: An Evolutionary Model of Competitive Release in Metastatic Castrate Resistant Prostate Cancer Treatment

West, J.; Ma, Y.; Newton, P. K.

10.1101/190140 — cancer biology — Posted on 2017-10-27

266 A novel feature selection for RNA-seq analysis

Han, H.

10.1101/209841 — bioinformatics — Posted on 2017-10-27

267 miCloud: a plug and play, on-premises bioinformatics cloud, providing seamless integration with Illumina genome sequencers

Kim, B.; Ali, T.; Krampis, K.; Dong, C.; Laungani, B.; Wultsch, C.; Lijeron, C.

10.1101/209734 — bioinformatics — Posted on 2017-10-27

268 Prediction and interpretation of deleterious coding variants in terms of protein structural stability

Ancien, F.; Pucci, F.; Godfroid, M.; Rooman, M.

10.1101/210120 — bioinformatics — Posted on 2017-10-27

269 Molecular basis for the recognition of the human AAUAAA polyadenylation signal

Sun, Y.; Zhang, Y.; Hamilton, K.; Manley, J. L.; Shi, Y.; Walz, T.; Tong, L.

10.1101/209809 — biochemistry — Posted on 2017-10-27

270 Conditioning by Subthreshold Synaptic Input Changes the Characteristic Firing Pattern of CA3 Hippocampal Neurons

Soldado Magraner, S.; Brandalise, F.; Honnuraiah, S.; Pfeiffer, M.; Gerber, U.; Douglas, R.

10.1101/084152 — neuroscience — Posted on 2017-10-27

271 Evaluation of risk in human interpersonal negotiations

Pulcu, E.; Haruno, M.

10.1101/100313 — neuroscience — Posted on 2017-10-27

272 Evidence for Late Pleistocene origin of Astyanax mexicanus cavefish

Fumey, J.; Hinaux, H.; Noirot, C.; Thermes, C.; Retaux, S.; Casane, D.

10.1101/094748 — evolutionary biology — Posted on 2017-10-27

273 Simultaneous CRISPR/Cas9-mediated editing of cassava eIF4E isoforms nCBP-1 and nCBP-2 confers elevated resistance to cassava brown streak disease

Gomez, M. A.; Lin, Z.-J. D.; Moll, T.; Luebbert, C.; Chauhan, R. D.; Vijayaraghavan, A.; Renninger, K.; Beyene, G.; Taylor, N. J.; Carrington, J. C.; Staskawicz, B. J.; Bart, R.

10.1101/209874 — plant biology — Posted on 2017-10-27

274 A first global phylogeny of Maize chlorotic mottle virus

Braidwood, L. A.; Quito-Avila, D. F.; Cabanas, D.; Bressan, A.; Wangai, A.; Baulcombe, D. C.

10.1101/209940 — plant biology — Posted on 2017-10-27

275 Sensory Detection of Aversive and Appetitive Stimuli by CRF neurons

Kim, J.; Fang, Y.-Y.; Bhat, S.; Shin, A.; Hashikawa, K.; Kim, D.; Sohn, J.-w.; Lin, D.; Suh, G. S. B.

10.1101/209148 — neuroscience — Posted on 2017-10-27

276 Single Molecule Sequencing of Cell-free DNA from Maternal Plasma for Noninvasive Trisomy Detection

Dong, M.; Deng, L.; Jin, H.; Cai, J.; Shang, H.; Zhang, S.; Zhang, Y.; Qin, J.; Zhang, D.; Long, F.; Zhang, R.; Chen, R.; Deem, M. W.; Yu, J.; He, J.

10.1101/209924 — genomics — Posted on 2017-10-27

277 Genomics and telemetry suggest a role for migration harshness in determining overwintering habitat choice, but not gene flow, in anadromous Arctic Char

Moore, J.-S.; Harris, L. N.; Le Luyer, J.; Sutherland, B. J. G.; Rougemont, Q.; Tallman, R. F.; Fisk, A. T.; Bernatchez, L.

10.1101/138545 — evolutionary biology — Posted on 2017-10-26

278 Mapping the ecological networks of microbial communities

Xiao, Y.; Angulo, M. T.; Friedman, J.; Waldor, M. K.; Weiss, S. T.; Liu, Y.-Y.

10.1101/150649 — ecology — Posted on 2017-10-26

279 Getting in shape and swimming: the role of cortical forces and membrane heterogeneity in eukaryotic cells

Wu, H.; Ponce de Leon, M. A.; Othmer, H.

10.1101/198523 — biophysics — Posted on 2017-10-26

280 Structural robustness of mammalian transcription factor networks reveals plasticity across development

Caldu-Primo, J. L.; Alvarez-Buylla, E. R.; Davila-Velderrain, J.

10.1101/209528 — systems biology — Posted on 2017-10-26

281 Discovery and Evaluation of Biosynthetic Pathways for the Production of Five Methyl Ethyl Ketone Precursors

Tokic, M.; Hadadi, N.; Ataman, M.; Neves, D. S.; Ebert, B. E.; Blank, L. M.; Miskovic, L.; Hatzimanikatis, V.

10.1101/209569 — synthetic biology — Posted on 2017-10-26

282 Nanopore Sequencing Reveals High-Resolution Structural Variation in the Cancer Genome

Gong, L.; Wong, C.-H.; Cheng, W.-C.; Tjong, H.; Menghi, F.; Ngan, C. Y.; Liu, E. T.; Wei, C.-L.

10.1101/209718 — genomics — Posted on 2017-10-26

283 Pathway-based polygenic risk implicates GO: 17144 drug metabolism in recurrent depressive disorder

Docherty, A.; Moscati, A.; Bigdeli, T. B.; Edwards, A. K.; Peterson, R.; Yang, F.; Adkins, D. E.; Anderson, J. S.; Flint, J.; Kendler, K. S.; Bacanu, S.-A.

10.1101/209544 — genetics — Posted on 2017-10-26

284 Cantu syndrome-associated SUR2 (ABCC9) mutations in distinct structural domains result in KATP channel gain-of-function by differential mechanisms

McClenaghan, C.; Hanson, A.; Sala-Rabanal, M.; Roessler, H. I.; Josifova, D.; Grange, D. K.; van Haaften, G.; Nichols, C. G.

10.1101/209783 — biophysics — Posted on 2017-10-26

285 FAST-SG: An alignment-free algorithm for hybrid assembly

Di Genova, A.; Ruz, G. A.; Sagot, M.-F.; Maass, A.

10.1101/209122 — bioinformatics — Posted on 2017-10-26

286 Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data

Köksal, A. S.; Beck, K.; Cronin, D. R.; McKenna, A.; Camp, N. D.; Srivastava, S.; MacGilvray, M. E.; Bodik, R.; Wolf-Yadlin, A.; Fraenkel, E.; Fisher, J.; Gitter, A.

10.1101/209676 — bioinformatics — Posted on 2017-10-26

287 A modified sequence capture approach allowing standard and methylation analyses of the same enriched genomic DNA sample

Olohan, L.; Gardiner, L.-J.; Lucaci, A.; Kenny, J.; Hall, A.

10.1101/209585 — genomics — Posted on 2017-10-26

288 Unbiased association and expression studies identify novel genes for tooth development

Williams, M.; Biguetti, C.; Romero-Bustillos, M.; Maheshwari, K.; Dinckan, N.; Cavalla, F.; Liu, X.; Silva, R.; Akyalcin, S.; Uyguner, Z. O.; Vieira, A.; Amendt, B. A.; Fakhrouri, W. D.; Letra, A.

10.1101/209684 — genetics — Posted on 2017-10-26

289 Morphological phylogenetic analysis with inapplicable data

Brazeau, M. D.; Guillerme, T.; Smith, M. R.

10.1101/209775 — evolutionary biology — Posted on 2017-10-26

290 Nuclear Abl Drives Extracellular-Vesicle Transfer of miR-34c to Induce Bystander Effects of Radiation

Rastogi, S.; Hwang, A.; Chan, J.; Wang, J. Y.

10.1101/209767 — cell biology — Posted on 2017-10-26

291 A physical model of cell metabolism

Fernandez-de-Cossio-Diaz, J.; Vazquez, A.

10.1101/209551 — biophysics — Posted on 2017-10-26

292 A toolbox of anti-mouse and rabbit IgG secondary nanobodies

Pleiner, T.; Bates, M.; Goerlich, D.

10.1101/209742 — biochemistry — Posted on 2017-10-26

293 Impact of division rate and cell size on gene expression noise

Bertaux, F.; Marguerat, S.; Shahrezaei, V.

10.1101/209593 — systems biology — Posted on 2017-10-26

294 Association theory: a new framework for analyzing social evolution

Gilbert, O. M.

10.1101/197632 — evolutionary biology — Posted on 2017-10-26

295 The DEAD box RNA helicase Ddx39a is essential for myocyte and lens development in zebrafish

Zhang, L.; Li, B.; Yang, Y.; Scott, I. C.; Lou, X.

10.1101/209650 — developmental biology — Posted on 2017-10-26

296 Control of septin filament flexibility and bundling

Khan, A.; Newby, J.; Gladfelter, A.

10.1101/209643 — cell biology — Posted on 2017-10-26

297 Assembly and translocation of a CRISPR-Cas primed acquisition complex

Brown, M. W.; Dillard, K. E.; Xiao, Y.; Dolan, A. E.; Hernandez, E. T.; Dahlhauser, S.; Kim, Y.; Myler, L. R.; Anslyn, E.; Ke, A.; Finkelstein, I.

10.1101/208058 — biophysics — Posted on 2017-10-26

298 ProbAnnoWeb and ProbAnnoPy: probabilistic annotation and gap-filling of metabolic reconstructions

King, B.; Farrah, T.; Richards, M.; Mundy, M.; Simeonidis, E.; Price, N. D.

10.1101/151258 — systems biology — Posted on 2017-10-26

299 Diagnostic Potential & the Interactive Dynamics of the Colorectal Cancer Virome

Hannigan, G. D.; Duhaime, M. B.; Ruffin, M. T.; Koumpouras, C. C.; Schloss, P. D.

10.1101/152868 — microbiology — Posted on 2017-10-26

300 The radiation of alopiine clausiliids in the Sicilian Channel (Central Mediterranean): phylogeny, patterns of morphological diversification and implications for taxonomy and conservation of Muticaria and Lampedusa

Fiorentino, V.; Salomone, N.; Schembri, P. J.; Manganelli, G.; Giusti, F.

10.1101/208348 — zoology — Posted on 2017-10-26

301 Interrelationship of photoperiod and feed utilization on growth and reproductive performance in the Red eyed orange molly (Poecilia sphenops)

Zutshi, B.; Singh, A.

10.1101/209346 — zoology — Posted on 2017-10-26

302 Identification of Cell States Using Super-Enhancer RNA

Tu, Y.-H.; Juan, H.-F.; Huang, H.-C.

10.1101/209387 — systems biology — Posted on 2017-10-26

303 Adaptive feature detection from differential processing in parallel retinal pathways

Ozuysal, Y.; Kastner, D. B.; Baccus, S. A.

10.1101/209379 — neuroscience — Posted on 2017-10-26

304 Polygenic prediction of the phenome, across ancestry, in emerging adulthood

Docherty, A. R.; Moscati, A.; Dick, D.; Savage, J. E.; Salvatore, J. E.; Cooke, M.; Aliev, F.; Moore, A. A.; Edwards, A. C.; Riley, B. P.; Adkins, D. E.; Peterson, R.; Webb, B. T.; Bacanu, S. A.; Kendler, K. S.

10.1101/124651 — genomics — Posted on 2017-10-26

305 Draft genomes of the fungal pathogen Phellinus noxius in Hong Kong

Tsang, K. S. W.; Lam, R. Y. C.; Kwan, H. S.

10.1101/209312 — genomics — Posted on 2017-10-26

306 Osteo-Oto-Hepato-Enteric Syndrome (O2HE) is caused by loss of function mutations in UNC45A

Esteve, C.; Francescatto, L.; Tan, P.; Bourchany, A.; De Leusse, C.; Marinier, E.; Blanchard, A.; Bourgeois, P.; Brochier-Armanet, C.; Bruel, A.-L.; Delarue, A.; Duffourd, Y.; Ecochard-Dugelay, E.; Gauchez, P.; Hery, G.; Huet, F.; Gauchez, P.; Gonzales, E.; Guettier-Bouttier, C.; Komuta, M.; Lacoste, C.; Maudinas, R.; Mazodier, K.; Rimet, Y.; Riviere, J.-B.; Roquelaure, B.; Sigaudy, S.; Stephenne, X.; Thauvin-Robinet, C.; Thevenon, J.; Sarles, J.; Levy, N.; Badens, C.; Goulet, O.; Hugot, J.-P.; Katsanis, N.; Faivre, L.; Fabre, A.

10.1101/208942 — genetics — Posted on 2017-10-26

307 Vulnerabilities of transcriptome-wide association studies

Wainberg, M.; Sinnott-Armstrong, N.; Knowles, D.; Golan, D.; Ermel, R.; Ruusalepp, A.; Quertermous, T.; Hao, K.; Bjorkegren, J. L. M.; Rivas, M. A.; Kundaje, A.

10.1101/206961 — genetics — Posted on 2017-10-26

308 Energy demand and the context-dependent effects of genetic interactions

Hoekstra, L. A.; Julick, C. R.; Mika, K. M.; Montooth, K. L.

10.1101/209510 — evolutionary biology — Posted on 2017-10-26

309 The dynamics of preferential host switching: host phylogeny as a key predictor of parasite prevalence and distribution

Engelstaedter, J.; Fortuna, N. Z.

10.1101/209254 — evolutionary biology — Posted on 2017-10-26

310 Mutualistic acacia-ants show that specialized bacteria are not required for the evolution of herbivory

Rubin, B. E. R.; Kautz, S.; Wray, B. D.; Moreau, C. S.

10.1101/208215 — ecology — Posted on 2017-10-26

311 mobsim: An R package for the simulation and measurement of biodiversity across spatial scales

May, F.; Gerstner, K.; McGlinn, D. J.; Xiao, X.; Chase, J. M.

10.1101/209502 — ecology — Posted on 2017-10-26

312 Marine cyanolichens from different littoral zones are associated with distinct bacterial communities

West, N. J.; Parrot, D.; Fayet, C.; Grube, M.; Tomasi, S.; Suzuki, M. T.

10.1101/209320 — ecology — Posted on 2017-10-26

313 The Population Dynamics of Obligately Cooperative Species Are Inherently Unstable

Halloway, A.; Malone, M.; Brown, J.

10.1101/208934 — ecology — Posted on 2017-10-26

314 Large conformational changes in FtsH create an opening for substrate entry

Carvalho, V.; Kieffer, R.; de Lange, N.; Engel, A.; Aubin-Tam, M.-E.

10.1101/209445 — biophysics — Posted on 2017-10-26

315 Spot-On: robust model-based analysis of single-particle tracking experiments

Hansen, A. S.; Woringer, M.; Grimm, J. B.; Lavis, L. D.; Tjian, R.; Darzacq, X.

10.1101/171983 — biophysics — Posted on 2017-10-26

316 OGT (O-GlcNAc Transferase) selectively modifies multiple residues unique to lamin A

Simon, D. N.; Wriston, A.; Fan, Q.; Shabanowitz, J.; Florwick, A.; Dharmaraj, T.; Peterson, S. B.; Gruenbaum, Y.; Carlson, C. R.; Gronning-Wang, L. M.; Hunt, D. F.; Wilson, K. L.

10.1101/206458 — biochemistry — Posted on 2017-10-26

317 Characterization of a Novel Model of Overuse-Induced Calcific Achilles Tendinopathy in Mice: Contralateral Tendinopathy Following Unilateral Tenotomy

Liang, W.; Jie, Z.; Gang-hui, Y.; Zhong-min, Z.; Tian-yu, C.; Jian, J.; Ping-lin, L.; Bin, H.; Bo, Y.; Yu-hui, C.; Da-di, J.; Min-jun, H.

10.1101/209247 — animal behavior and cognition — Posted on 2017-10-26

318 Gene expression in patient-derived neural progenitors provide insights into neurodevelopmental aspects of schizophrenia

Evgrafov, O. V.; Armoskus, C.; Wrobel, B. B.; Spitsyna, V. N.; Souaiaia, T.; Herstein, J. S.; Walker, C. P.; Nguyen, J. D.; Camarena, A.; Weitz, J. R.; Kim, J. M. H.; Lopez Duarte, E.; Wang, K.; Simpson, G. M.; Sobell, J. L.; Medeiros, H.; Pato, M. T.; Pato, C. N.; Knowles, J. A.

10.1101/209197 — genetics — Posted on 2017-10-26

319 Robust identification of deletions in exome and genome sequence data based on clustering of Mendelian errors

Manheimer, K. B.; Patel, N.; Richter, F.; Gorham, J.; Tai, A. C.; Homsy, J.; Boskovski, M. T.; Parfenov, M.; Goldmuntz, E.; Chung, W. K.; Brueckner, M.; Tristani-Firouzi, M.; Srivastava, D.; Seidman, J. G.; Seidman, C. E.; Gelb, B. D.; Sharp, A. J.

10.1101/209478 — genetics — Posted on 2017-10-26

320 High-affinity low-capacity and low-affinity high-capacity N-acetyl-2-aminofluorene (AAF) macromolecular binding sites are revealed during the growth cycle of adult rat hepatocytes in primary culture

Koch, K. S.; Moran, T.; Shier, W. T. T.; Leffert, H. L.

10.1101/209130 — cancer biology — Posted on 2017-10-26

321 N-acetyl-2-aminofluorene (AAF) processing in adult rat hepatocytes in primary culture occurs by high-affinity low-velocity and low-affinity high-velocity AAF metabolite-forming systems

Koch, K. S.; Moran, T.; Shier, W. T.; Leffert, H. L.

10.1101/209072 — cancer biology — Posted on 2017-10-26

322 Double insertion of transposable elements provides a substrate for the evolution of satellite DNA

McGurk, M. P.; Barbash, D. A.

10.1101/158386 — genomics — Posted on 2017-10-26

323 Microinjection to deliver protein, mRNA, and DNA into zygotes of the cnidarian endosymbiosis model Aiptasia sp.

Jones, V. A. S.; Bucher, M.; Hambleton, E. A.; Guse, A.

10.1101/187278 — developmental biology — Posted on 2017-10-26

324 The Drosophila SK potassium channel negatively regulates nociception.

Walcott, K.; Mauthner, S.; Tsubouchi, A.; Robertson, J.; Tracey, D.

10.1101/208868 — neuroscience — Posted on 2017-10-26

325 ProLIF: a quantitative assay for investigating integrin cytoplasmic protein interactions and synergistic membrane effects on proteoliposomes

De Franceschi, N.; Miihkinen, M.; Hamidi, H.; Alanko, J.; Mai, A.; Picas, L.; Levy, D.; Mattjus, P.; Goult, B. T.; Goud, B.; Ivaska, J.

10.1101/209262 — molecular biology — Posted on 2017-10-26

326 Shavenbaby and Yorkie mediate Hippo signaling to protect adult stem cells from apoptosis

Bohere, J.; Mancheno-Ferris, A.; Akino, K.; Yamabe, Y.; Inagaki, S.; Chanut-Delalande, H.; Plaza, S.; Kageyama, Y.; Osman, D.; Polesello, C.; Payre, F.

10.1101/163279 — developmental biology — Posted on 2017-10-26

327 Preovulatory oocyte aging in mice affects fertilization rate and embryonic genome activation

Demond, H.; Dankert, D.; Gruemmer, R.; Horsthemke, B.

10.1101/209437 — developmental biology — Posted on 2017-10-26

328 A Comprehensive Immunologic Portrait of Triple-Negative Breast Cancer

Liu, Z.; Li, M.; Jiang, Z.; Wang, X.

10.1101/209288 — cancer biology — Posted on 2017-10-26

329 Transcriptional regulation by NR5A2 couples cell differentiation and inflammation in the pancreas

Cobo, I.; Martinelli, P.; Flandez, M.; Bakiri, L.; Zhang, M.; Carrillo-de-Santa-Pau, E.; Jia, J.; Thommesen, L.; Bruland, T.; del Pozo, N.; Olson, S.; Smith, J.; Bamlet, W. R.; Petersen, G. M.; Malats, N.; Amundadottir, L.; Wagner, E.; Real, F. X.

10.1101/209411 — cancer biology — Posted on 2017-10-26

330 Vaccination of health care workers to control Ebola virus disease

Robert, A.; Camacho, A.; Edmunds, W. J.; Baguelin, M.; Muyembe Tamfum, J.-J.; Rosello, A.; Keita, S.; Eggo, R. M.

10.1101/113506 — epidemiology — Posted on 2017-10-26

331 48-spot single-molecule FRET setup with periodic acceptor excitation

Ingargiola, A.; Segal, M.; Gulinatti, A.; Rech, I.; Labanca, I.; Maccagnani, P.; Ghioni, M.; Weiss, S.; Michalet, X.

10.1101/156182 — biophysics — Posted on 2017-10-26

332 Lipid-protein interplay in dimerization of the juxtamembrane domains of epidermal growth factor receptor

Maeda, R.; Sato, T.; Okamoto, K.; Yanagawa, M.; Sako, Y.

10.1101/197673 — biophysics — Posted on 2017-10-26

333 Double-digest RAD sequencing outperforms microsatellite loci at assigning paternity and estimating relatedness: a proof of concept in a highly promiscuous bird

Thrasher, D. J.; Butcher, B. G.; Campagna, L.; Webster, M. S.; Lovette, I. J.

10.1101/169144 — animal behavior and cognition — Posted on 2017-10-26

334 Ongoing human chromosome end extension revealed by analysis of BioNano and nanopore data

Shao, H.; Zhou, C.; Cao, M. D.; Coin, L.

10.1101/108365 — genomics — Posted on 2017-10-26

335 Finite-sites multiple mutations interference gives rise to wavelet-like oscillations of multilocus linkage disequilibrium

Garcia, V.; Glassberg, E. C.; Harpak, A.; Feldman, M. W.

10.1101/090571 — genetics — Posted on 2017-10-26

336 MutationalPatterns: comprehensive genome-wide analysis of mutational processes

Blokzijl, F.; Janssen, R.; van Boxtel, R.; Cuppen, E.

10.1101/071761 — bioinformatics — Posted on 2017-10-26

337 MAK and CCRK kinases regulate kinesin-2 motility in C. elegans neuronal cilia

Yi, P.; Xie, C.; Ou, G.

10.1101/209221 — cell biology — Posted on 2017-10-26

338 Conserved patterns of somatic mutations in human peripheral blood cells

Liggett, L. A.; Sharma, A.; De, S.; DeGregori, J.

10.1101/208066 — genetics — Posted on 2017-10-25

339 Imitation Predicts Social Favor in Adolescent Rhesus Macaques (Macaca mulatta)

Anderson, J.; Kinnally, E.

10.1101/208777 — animal behavior and cognition — Posted on 2017-10-25

340 Power, false discovery rate and Winner’s Curse in eQTL studies

Huang, Q. Q.; Ritchie, S. C.; Brozynska, M.; Inouye, M.

10.1101/209171 — genetics — Posted on 2017-10-25

341 Synergism between a simple sugar and a small intrinsically disordered protein mitigate the lethal stresses of severe water loss

Kim, S. X.; Camdere, G.; Hu, X.; Koshland, D.; Tapia, H.

10.1101/209163 — cell biology — Posted on 2017-10-25

342 Dynamic and Selective Low-Complexity Domain Interactions Revealed by Live-Cell Single-Molecule Imaging

Chong, S.; Dugast-Darzacq, C.; Liu, Z.; Dong, P.; Dailey, G.; Banala, S.; Lavis, L.; Darzacq, X.; Tjian, R.

10.1101/208710 — biophysics — Posted on 2017-10-25

343 Conservation of specificity in two low-specificity proteins

Wheeler, L. C.; Anderson, J. A.; Morrison, A. J.; Wong, C. E.; Harms, M. J.

10.1101/207324 — biochemistry — Posted on 2017-10-25

344 Coordination of robust single cell rhythms in the Arabidopsis circadian clock via spatial waves of gene expression

Gould, P. D.; Domijan, M.; Greenwood, M.; Tokuda, I. T.; Rees, H.; Kozma-Bognar, L.; Hall, A. J.; Locke, J. C. W.

10.1101/208900 — systems biology — Posted on 2017-10-25

345 Massive Phenotypic Measurements Reveal Complex Physiological Consequences Of Differential Translation Efficacies

Arkin, A. P.; Cambray, G.

10.1101/209098 — synthetic biology — Posted on 2017-10-25

346 The Reproducibility Of Research And The Misinterpretation Of P Values

Colquhoun, D.

10.1101/144337 — scientific communication and education — Posted on 2017-10-25

347 Postnatal Tendon Growth and Remodeling Requires Platelet-Derived Growth Factor Receptor Signaling

Sugg, K. B.; Markworth, J. F.; Disser, N. P.; Rizzi, A. M.; Talarek, J. R.; Sarver, D. C.; Brooks, S. V.; Mendias, C. L.

10.1101/208991 — physiology — Posted on 2017-10-25

348 Decomposing parietal memory reactivation to predict consequences of remembering

Lee, H.; Samide, R.; Richter, F. R.; Kuhl, B. A.

10.1101/208678 — neuroscience — Posted on 2017-10-25

349 Rem2 regulates distinct homeostatic mechanisms in visual circuit plasticity

Moore, A. R.; Richards, S. E.; Kenny, K.; Royer, L.; Chan, U.; Flavahan, K.; Van Hooser, S. D.; Paradis, S.

10.1101/208975 — neuroscience — Posted on 2017-10-25

350 Neural oscillations during conditional associative learning

Clarke, A.; Roberts, B. M.; Ranganath, C.

10.1101/198838 — neuroscience — Posted on 2017-10-25

351 Efficient in situ barcode sequencing using padlock probe-based BaristaSeq

Chen, X.; Sun, Y.-C.; Church, G. M.; Lee, J. H.; Zador, A. M.

10.1101/180323 — molecular biology — Posted on 2017-10-25

352 Terminal uridylyltransferases target RNA viruses as part of the innate immune system in animals

Le Pen, J.; Jiang, H.; Di Domenico, T.; Kneuss, E.; Kosalka, J.; Morgan, M.; Much, C.; Rudolph, K. L. M.; Enright, A. J.; O'Carroll, D.; Wang, D.; Miska, E. A.

10.1101/209114 — immunology — Posted on 2017-10-25

353 Multi-objective optimized breeding strategies

Akdemir, D.; Isidro Sanchez, J.

10.1101/209080 — genetics — Posted on 2017-10-25

354 The Cultural Brain Hypothesis: How culture drives brain expansion, underlies sociality, and alters life history

Muthukrishna, M.; Doebeli, M.; Chudek, M.; Henrich, J.

10.1101/209007 — evolutionary biology — Posted on 2017-10-25

355 Non-B-form DNA structures mark centromeres

Kasinathan, S.; Henikoff, S.

10.1101/209023 — evolutionary biology — Posted on 2017-10-25

356 Sociodemographic variation in the oral microbiome

Renson, A.; Jones, H. E.; Beghini, F.; Segata, N.; Zolnik, C. P.; Usyk, M.; Moody, T. U.; Thorpe, L.; Burk, R.; Waldron, L. D.; Dowd, J. B.

10.1101/189225 — epidemiology — Posted on 2017-10-25

357 Socioeconomic Disparities and Sexual Dimorphism in Neurotoxic Effects of Ambient Fine Particles on Youth IQ: A Longitudinal Analysis

Wang, P.; Tuvblad, C.; Younan, D.; Franklin, M.; Lurmann, F.; Wu, J.; Baker, L. A.; Chen, J.-C.

10.1101/207589 — epidemiology — Posted on 2017-10-25

358 A computational model of MGUS progression to Multiple Myeloma identifies optimum screening strategies and their effects on mortality

Altrock, P. M.; Ferlic, J.; Galla, T.; Tomasson, M. H.; Michor, F.

10.1101/208645 — epidemiology — Posted on 2017-10-25

359 Use of a scoring strategy to determine clinical risk of progression and risk group-specific treatment adherence in subjects with latent tuberculosis infection

Scolarici, M.; Dekitani, K.; Chen, L.; Sokol-Anderson, M.; Hoft, D. F.; Chatterjee, S.

10.1101/207852 — epidemiology — Posted on 2017-10-25

360 Division-independent differentiation mandates proliferative competition among stem cells

Reilein, A.; Melamed, D.; Tavare, S.; Kalderon, D.

10.1101/208983 — developmental biology — Posted on 2017-10-25

361 Mechanochemical feedback and control of endocytosis and membrane tension

Thottacherry, J. J.; Kosmalska, A. J.; Elosegui-Artola, A.; Pradhan, S.; Sharma, S.; Singh, P. P.; Guadamillas, M. C.; Chaudhary, N.; Vishwakarma, R.; Trepat, X.; del Pozo, M. A.; Parton, R. G.; Pullarkat, P.; Roca-Cusachs, P.; Mayor, S.

10.1101/201509 — cell biology — Posted on 2017-10-25

362 Phylogenetic profiling identifies glucosyl-phosphoryl dolichol scramblase candidates

Skrabanek, L.; Menon, A. K.

10.1101/209106 — cell biology — Posted on 2017-10-25

363 Membrane Diffusion Occurs by a Continuous-Time Random Walk Sustained by Vesicular Trafficking.

Goiko, M.; de Bruyn, J. R.; Heit, B.

10.1101/208967 — biophysics — Posted on 2017-10-25

364 Computational discovery of tissue morphology biomarkers in very long-term survivors with pancreatic ductal adenocarcinoma

Sarnecki, J. S.; Wood, L. D.; Wolfgang, C. L.; Hruban, R. H.; Maitra, A.; Wirtz, D.; Wu, P.-H.

10.1101/207969 — bioinformatics — Posted on 2017-10-25

365 Discovering Competing Endogenous RNA Interactions in Breast Cancer Molecular Subtypes

Olgun, G.; Sahin, O.; Tastan, O.

10.1101/209015 — bioinformatics — Posted on 2017-10-25

366 HPViewer: Sensitive and specific genotyping of human papillomavirus in metagenomic DNA

Hao, Y.; Yang, L.; Galvao Neto, A.; Amin, M. R.; Kelly, D.; Brown, S. M.; Branski, R. C.; Pei, Z.

10.1101/208926 — bioinformatics — Posted on 2017-10-25

367 Opponent assessment and conflict resolution through mutual motor coordination

Laan, A.; Iglesias, M.; de Polavieja, G.

10.1101/208918 — animal behavior and cognition — Posted on 2017-10-25

368 Default Mode Network patterns and its interactions with memory performance in patients with Temporal Lobe Epilepsy and controls

Zanao, T. A.; Lopes, T.; Campos, B.; Nogueira, M. H.; Yasuda, C. L.; Cendes, F.

10.1101/205476 — neuroscience — Posted on 2017-10-25

369 Adaptation in a fibronectin binding autolysin of Staphylococcus saprophyticus

Mortimer, T. D.; Annis, D. S.; O'Neill, M. B.; Bohr, L. L.; Smith, T. M.; Poinar, H. N.; Mosher, D. F.; Pepperell, C. S.

10.1101/136556 — microbiology — Posted on 2017-10-25

370 Decomposing parietal memory reactivation to predict consequences of remembering

Lee, H.; Samide, R.; Richter, F. R.; Kuhl, B. A.

10.1101/208678 — neuroscience — Posted on 2017-10-25

371 An information-theoretic perspective on the costs of cognition

Zenon, A.; Solopchuk, O.; Pezzulo, G.

10.1101/208280 — neuroscience — Posted on 2017-10-25

372 Entrained audiovisual speech integration implemented by two independent computational mechanisms: Redundancy in left posterior superior temporal gyrus and Synergy in left motor cortex

Park, H.; Ince, R. A. A.; Schyns, P. G.; Thut, G.; Gross, J.

10.1101/202911 — neuroscience — Posted on 2017-10-25

373 Novel Techniques To Study Ancient Micro Amber From Tropical Beach Sand Reveal A Treasurehouse Of Exceptionally Well Preserved Fossilized Microfungi

Dabolkar, S.; Kamat, N.

10.1101/207977 — evolutionary biology — Posted on 2017-10-25

374 Continuous Biomarker Assessment by Exhaustive Survival Analysis

Pearce, D. A.; Nirmal, A. J.; Freeman, T. C.; Sims, A. H.

10.1101/208660 — bioinformatics — Posted on 2017-10-25

375 Massive Factorial Design Untangles Coding Sequences Determinants Of Translation Efficacy

Cambray, G.; Guimaraes, J. C.; Arkin, A. P.

10.1101/208801 — synthetic biology — Posted on 2017-10-25

376 Bundle sheath extensions in tomato affect leaf phenotypic plasticity in response to irradiance

Barbosa, M. A. M.; Chitwood, D. H.; Azevedo, A. A.; Araujo, W. L.; Martins, S. C. V.; Ribeiro, D. M.; Peres, L. E. P.; Zsögön, A.

10.1101/208850 — plant biology — Posted on 2017-10-25

377 Differentiable processing of objects, associations and scenes within the hippocampus

Dalton, M. A.; Zeidman, P.; McCormick, C.; Maguire, E. A.

10.1101/208827 — neuroscience — Posted on 2017-10-25

378 White matter haemodynamics: basic physiology and disruption in neuroinflammatory disease

Kolbe, S.; Gajamange, S.; Cleary, J.; Kilpatrick, T.

10.1101/208751 — neuroscience — Posted on 2017-10-25

379 Single-cell transcriptomic catalog of mouse cortical development

Loo, L.; Simon, J. M.; McCoy, E. S.; Niehaus, J. K.; Zylka, M. J.

10.1101/208744 — neuroscience — Posted on 2017-10-25

380 Neuronal CCL2 expression drives inflammatory monocyte infiltration into the brain during acute virus infection

Howe, C. L.; LaFrance-Corey, R. G.; Goddery, E. N.; Mirchia, K.

10.1101/208587 — neuroscience — Posted on 2017-10-25

381 How the human brain introspects about one’s own episodes of cognitive control

Soto, D.; Theodoraki, M.; Paz-Alonso, P. M.

10.1101/208637 — neuroscience — Posted on 2017-10-25

382 How emotional memory affects face remembering: an ERP investigation

Proverbio, A. M.; Vanutelli, M. E.; Vigano, S.

10.1101/208256 — neuroscience — Posted on 2017-10-25

383 Invariances in a combinatorial olfactory receptor code

Si, G.; Kanwal, J. K.; Hu, Y.; Tabone, C. J.; Baron, J.; Berck, M. E.; Vignoud, G.; Samuel, A. D. T.

10.1101/208538 — neuroscience — Posted on 2017-10-25

384 Metabolic Interactions Between Dynamic Bacterial Subpopulations

Rosenthal, A. Z.; Qi, Y.; Hormoz, S.; Park, J.; Li, S. H.-J.; Elowitz, M.

10.1101/208686 — microbiology — Posted on 2017-10-25

385 Defining the Transcriptional Landscape during Cytomegalovirus Latency with Single-Cell RNA Sequencing

Shnayder, M.; Nachshon, A.; Krishna, B.; Poole, E.; Boshkov, A.; Binyamin, A.; Maza, I.; Sinclair, J.; Schwartz, M.; Stern-Ginossar, N.

10.1101/208603 — microbiology — Posted on 2017-10-25

386 The nucleoid as a scaffold for the assembly of bacterial signaling complexes

Moine, A.; Espinosa, L.; Martineau, E.; Yaikhomba, M.; Jazleena, P. J.; Byrne, D.; Biondi, E. G.; Notomista, E.; Brilli, M.; Molle, V.; Gayathri, P.; Mignot, T.; Mauriello, E. M. F.

10.1101/169912 — microbiology — Posted on 2017-10-25

387 A fine-tuned vector-parasite dialogue in tsetse’s cardia determines peritrophic matrix integrity and trypanosome transmission success

Vigneron, A.; Aksoy, E.; Weiss, B. L.; Bing, X.; Zhao, X.; Awuoche, E. O.; O'Neill, M.; Wu, Y.; Attardo, G. M.; Aksoy, S.

10.1101/207993 — microbiology — Posted on 2017-10-25

388 Id proteins suppress E2A-driven innate-like T cell development prior to TCR selection

Roy, S.; Moore, A. J.; Love, C.; Reddy, A.; Rajagopalan, D.; Dave, S. S.; Li, L.; Murre, C.; Zhuang, Y.

10.1101/208728 — immunology — Posted on 2017-10-25

389 Intrinsic specificity differences between transcription factor paralogs partly explain their differential in vivo binding

Shen, N.; Zhao, J.; Schipper, J.; Zhang, Y.; Bepler, T.; Leehr, D.; Bradley, J.; Horton, J.; Lapp, H.; Gordan, R.

10.1101/208561 — genomics — Posted on 2017-10-25

390 Experimental signal dissection and method sensitivity analyses reaffirm the potential of fossils and morphology in the resolution of seed plant phylogeny

Coiro, M.; Chomicki, G.; Doyle, J. A.

10.1101/134262 — evolutionary biology — Posted on 2017-10-25

391 Climatic niche dynamics and its role in the insular endemism of Anolis lizards

Velasco, J. A.; Martinez-Meyer, E.; Flores-Villela, O.

10.1101/208652 — evolutionary biology — Posted on 2017-10-25

392 Modulation of the Neisseria gonorrhoeae drug efflux conduit MtrE

Tamburrino, G.; Llabres, S.; Vickery, O. N.; Pitt, S. J.; Zachariae, U.

10.1101/208504 — biophysics — Posted on 2017-10-25

393 Sub-Confluent Culture of Mouse Embryonic Stem Cell-derived Ventricular Cardiomyocytes On & In Gels - Enhancement of Maturation Phenotype Relative to Tissue Culture Polystyrene via Enabling of Auxotonic Contraction

Mittal, N.; Atmanli, A.; Hu, D.; Groeneweg, D.; Kausel, E.; Domian, I.

10.1101/199737 — biophysics — Posted on 2017-10-25

394 Graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

Wolf, F. A.; Hamey, F.; Plass, M.; Solana, J.; Dahlin, J. S.; Gottgens, B.; Rajewsky, N.; Simon, L.; Theis, F. J.

10.1101/208819 — bioinformatics — Posted on 2017-10-25

395 Image-based methods for phenotyping growth dynamics and fitness in large plant populations

Vasseur, F.; Wang, G.; Bresson, J.; Schwab, R.; Weigel, D.

10.1101/208512 — bioinformatics — Posted on 2017-10-25

396 Data Science Issues in Understanding Protein-RNA Interactions

Chakrabarti, A. M.; Haberman, N.; Praznik, A.; Luscombe, N. M.; Ule, J.

10.1101/208124 — bioinformatics — Posted on 2017-10-25

397 Evaluation of Convolutionary Neural Networks Modeling of DNA Sequences using Ordinal versus one-hot Encoding Method

Choong, A. C. H.; Lee, N. K.

10.1101/186965 — bioinformatics — Posted on 2017-10-25

398 Early Detection of Apathetic Phenotypes in Huntington’s Disease Knock-in Mice Using Open Source Tools

Minnig, S.; Bragg, R. M.; Tiwana, H. S.; Solem, W. T.; Hovander, W. S.; Vik, E.-M. S.; Hamilton, M.; Legg, S. R. W.; Shuttleworth, D. D.; Coffey, S. R.; Cantle, J. P.; Carroll, J. B.

10.1101/208520 — animal behavior and cognition — Posted on 2017-10-25

399 No evidence that preferences for facial masculinity track changes in women’s hormonal status

Jones, B. C.; Hahn, A. C.; Fisher, C. I.; Wang, H.; Kandrik, M.; Han, C.; Fasolt, V.; Morrison, D.; Holzleitner, I. J.; O'Shea, K. J.; Roberts, C.; Little, A. C.; DeBruine, L. M.

10.1101/136549 — animal behavior and cognition — Posted on 2017-10-25

400 Pattern analysis of pluripotency reveals the molecular basis of naïve, primed and formative states

Stumpf, P. S.; MacArthur, B. D.

10.1101/208470 — systems biology — Posted on 2017-10-25

401 Birthweight, Type 2 Diabetes and Cardiovascular Disease: Addressing the Barker Hypothesis with Mendelian randomization

Zanetti, D.; Tikkanen, E.; Gustafsson, S.; Priest, J. R.; Burgess, S.; Ingelsson, E.

10.1101/208629 — genetics — Posted on 2017-10-25

402 Heritability of regional brain volumes in large-scale neuroimaging and genetic studies

Zhao, B.; Ibrahim, J. G.; Li, Y.; Li, T.; Wang, Y.; Shan, Y.; Zhu, Z.; Zhou, F.; Zhang, J.; Huang, C.; Liao, H.; Yang, L.; Thompson, P. M.; Zhu, H.

10.1101/208496 — genetics — Posted on 2017-10-25

403 3D cell nuclear morphology: microscopy imaging dataset and voxel-based morphometry classification results

Kalinin, A. A.; Allyn-Feuer, A.; Ade, A.; Fon, G.-V.; Meixner, W.; Dilworth, D.; de Wet, J. R.; Higgins, G. A.; Zheng, G.; Creekmore, A.; Wiley, J. W.; Verdone, J. E.; Veltri, R. W.; Pienta, K. J.; Coffey, D. S.; Athey, B. D.; Dinov, I. D.

10.1101/208207 — bioinformatics — Posted on 2017-10-25

404 Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics and epigenetics data

Nguyen, Q. H.; Tellam, R. L.; Naval-Sanchez, M.; Porto-Neto, L. R.; Barendse, W.; Reverter, A.; Hayes, B. J.; Kijas, J. W.; Dalrymple, B. P.

10.1101/143990 — genomics — Posted on 2017-10-24

405 Theoretical analysis of the distribution of isolated particles in the TASEP: Application to mRNA translation rate estimation

Dao Duc, K.; Saleem, Z. H.; Song, Y. S.

10.1101/147017 — genomics — Posted on 2017-10-24

406 Recentrifuge: robust comparative analysis and contamination removal for metagenomic data

Marti, J. M.

10.1101/190934 — bioinformatics — Posted on 2017-10-24

407 Lancet: genome-wide somatic variant calling using localized colored DeBruijn graphs

Narzisi, G.; Corvelo, A.; Arora, K.; Bergmann, E.; Shah, M.; Musunuri, R.; Emde, A.-K.; Robine, N.; Vacic, V.; Zody, M. C.

10.1101/196311 — bioinformatics — Posted on 2017-10-24

408 Delirium, frailty and mortality: interactions in a prospective study of hospitalized older people

Dani, M.; Owen, L.; Jackson, T.; Rockwood, K.; Sampson, E.; Davis, D.

10.1101/207621 — epidemiology — Posted on 2017-10-24

409 Arabidopsis phenotyping through Geometric Morphometrics

Manacorda, C. A.; Asurmendi, S.

10.1101/194449 — plant biology — Posted on 2017-10-24

410 Selective attention gates the interactive crossmodal coupling between cortical sensory systems

Convento, S.; Rahman, M. S.; Yau, J. M.

10.1101/207548 — neuroscience — Posted on 2017-10-24

411 Population Genetics Based Phylogenetics Under Stabilizing Selection for an Optimal Amino Acid Sequence: A Nested Modeling Approach

Beaulieu, J.; O'Meara, B.; Zaretzki, R.; Landerer, C.; Chai, J.; Gilchrist, M. A.

10.1101/120238 — evolutionary biology — Posted on 2017-10-24

412 Non-invasive imaging platform reveals a potential tumourigenicity hazard of systemically administered cells

Scarfe, L.; Taylor, A.; Sharkey, J.; Barrow, M.; Comenge, J.; Beeken, L.; Astley, C.; Santeramo, I.; Hutchinson, C.; Ressel, L.; Smythe, J.; Austin, E.; Levy, R.; Rosseinsky, M. J.; Adams, D. J.; Poptani, H.; Park, B. K.; Murray, P.; Wilm, B.

10.1101/202101 — cell biology — Posted on 2017-10-24

413 Relative evolutionary rate inference in HyPhy with LEISR

Spielman, S. J.; Pond, S. L. K.

10.1101/206011 — bioinformatics — Posted on 2017-10-24

414 Cadmium exposure inhibits branching morphogenesis and causes alterations consistent with HIF-1α inhibition in human primary breast organoids

Rocco, S. A.; Koneva, L.; Middleton, L. Y. M.; Thong, T.; Solanki, S.; Karram, S.; Nambunmee, K.; Harris, C.; Rozek, L. S.; Sartor, M. A.; Shah, Y. M.; Colacino, J.

10.1101/208157 — pharmacology and toxicology — Posted on 2017-10-24

415 Precise excitation-inhibition balance controls gain and timing in hippocampus

Bhatia, A.; Moza, S.; Bhalla, U. S.

10.1101/190298 — neuroscience — Posted on 2017-10-24

416 The Transcriptional Logic of Mammalian Neuronal Diversity

Sugino, K.; Clark, E.; Schulmann, A.; Shima, Y.; Wang, L.; Hunt, D. L.; Hooks, B. M.; Trankner, D.; Chandrashekar, J.; Picard, S.; Lemire, A.; Spruston, N.; Hantman, A.; Nelson, S. B.

10.1101/208355 — neuroscience — Posted on 2017-10-24

417 Synaptic and transcriptionally downregulated genes are associated with cortical thickness differences in autism

Romero-Garcia, R.; Warrier, V.; Bullmore, E.; Baron-Cohen, S.; Bethlehem, R. A. I.

10.1101/208223 — neuroscience — Posted on 2017-10-24

418 RSV Downregulates IL-21/IL-21R On TFH Cells Via PD-L1 Induction In APCs Impairing Protective Humoral Responses

Benedetti Gassen, R.; Fazolo, T.; Nascimento de Freitas, D.; Borges, T. J.; Maito, F.; Mendes, D.; Bafica, A.; Rodrigues, L. C.; Duarte de Souza, A. P.; Bonorino, C.

10.1101/203133 — immunology — Posted on 2017-10-24

419 Infant Weight Gain Trajectories Linked To Oral Microbiome Composition

Craig, S.; Blankenberg, D.; Parodi, A.; Paul, I.; Birch, L.; Savage, J.; Marini, M.; Stokes, J.; Nekrutenko, A.; Reimherr, M.; Chiaromonte, F.; Makova, K.

10.1101/208090 — genomics — Posted on 2017-10-24

420 Evaluating genetic ancestry and self-reported ethnicity in the context of carrier screening

Shraga, R.; Yarnall, S.; Elango, S.; Manoharan, A.; Rodriguez, S. A.; Bristow, S.; Kumar, N.; Niknazar, M.; Hoffman, D.; Ghadir, S.; Vassena, R.; Chen, S.; Hershlag, A.; Grifo, J.; Puig, O.

10.1101/208413 — genetics — Posted on 2017-10-24

421 Genetics of trans-regulatory variation in gene expression

Albert, F. W.; Bloom, J. S.; Siegel, J.; Day, L.; Kruglyak, L.

10.1101/208447 — genetics — Posted on 2017-10-24

422 Fish Diversity as a Function of Depth and Body Size

Stiefel, K. M.; Quimpo, T. J. R.

10.1101/208397 — evolutionary biology — Posted on 2017-10-24

423 Origins of the current outbreak of multidrug resistant malaria in Southeast Asia: a retrospective genetic study

Amato, R.; Pearson, R. D.; Almagro-Garcia, J.; Amaratunga, C.; Lim, P.; Suon, S.; Sreng, S.; Drury, E.; Stalker, J.; Miotto, O.; Fairhurst, R. M.; Kwiatkowski, D. P.

10.1101/208371 — evolutionary biology — Posted on 2017-10-24

424 Hsp90 dictates viral sequence space by balancing the evolutionary tradeoffs between protein stability, aggregation and translation rate

Geller, R.; Pechmann, S.; Acevedo, A.; Andino, R.; Frydman, J.

10.1101/208462 — evolutionary biology — Posted on 2017-10-24

425 Reconstructing deep-time paleoclimate legacies unveil the demise and turnover of the ancient (boreo)tropical flora

Sanchez Meseguer, A.; Lobo, J.; Cornuault, J.; Beerling, D.; Ruhfel, B.; Davis, C.; Jousselin, E.; Sanmartin, I.

10.1101/208454 — evolutionary biology — Posted on 2017-10-24

426 Small Molecule Inhibitors of the Human Histone Lysine Methyltransferase NSD2 / WHSC1 / MMSET Identified from a Quantitative High-Throughput Screen with Nucleosome Substrate

Coussens, N. P.; Kales, S. C.; Henderson, M. J.; Lee, O. W.; Horiuchi, K. Y.; Wang, Y.; Chen, Q.; Kuznetsova, E.; Wu, J.; Cheff, D. M.; Chih-Chien Cheng, K.; Shinn, P.; Brimacombe, K. R.; Shen, M.; Simeonov, A.; Ma, H.; Jadhav, A.; Hall, M. D.

10.1101/208439 — cancer biology — Posted on 2017-10-24

427 The SAM domain of mouse SAMHD1 is critical for its activation and regulation

Buzovetsky, O.; Tang, C.; Knecht, K.; Antonucci, J. M.; Wu, L.; Ji, X.; Xiong, Y.

10.1101/208363 — biophysics — Posted on 2017-10-24

428 Distribution of Purines and Pyrimidines over miRNAs of Human, Gorilla and Chimpanzee

Das, J. K.; Pal Choudhury, P.; Chaudhuri, A.; Hassan, S. S.; Basu, P.

10.1101/208405 — bioinformatics — Posted on 2017-10-24

429 Polarization Vision: Overcoming Challenges of Working with a Property of Light We Barely See

Foster, J. J.; Temple, S. E.; How, M. J.; Daly, I. M.; Sharkey, C. R.; Wilby, D.; Roberts, N. W.

10.1101/207217 — animal behavior and cognition — Posted on 2017-10-24

430 Inferring hidden structure in multilayered neural circuits

Maheswaranathan, N.; Kastner, D. B.; Baccus, S. A.; Ganguli, S.

10.1101/120956 — neuroscience — Posted on 2017-10-24

431 Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics and epigenetics data

Nguyen, Q. H.; Tellam, R. L.; Naval-Sanchez, M.; Porto-Neto, L. R.; Barendse, W.; Reverter, A.; Hayes, B. J.; Kijas, J. W.; Dalrymple, B. P.

10.1101/143990 — genomics — Posted on 2017-10-24

432 Transcriptomic profiling of nematode parasites surviving after vaccine exposure

Salle, G.; Laing, R.; Cotton, J. A.; Maitland, K.; Martinelli, A.; Holroyd, N.; Tracey, A.; Berriman, M.; Smith, D. W.; Newlands, G. F. J.; Hanks, E.; Devaney, E.; Britton, C.

10.1101/144980 — genomics — Posted on 2017-10-24

433 Quantification of autism recurrence risk by direct assessment of paternal sperm mosaicism

Breuss, M.; Kleiber, M.; George, R. D.; Antaki, D.; James, K. N.; Ball, L. L.; Hong, O.; Garcia, C. A. B.; Musaev, D.; Nguyen, A.; McEvoy-Venneri, J.; Knox, R.; Sticca, E.; Devinsky, O.; Gymrek, M.; Sebat, J.; Gleeson, J. G.

10.1101/208165 — genetics — Posted on 2017-10-24

434 Coevolution of virulence and immunosuppression through multiple infections

Kamiya, T.; Mideo, N.; Alizon, S.

10.1101/149211 — evolutionary biology — Posted on 2017-10-24

435 Adaptive evolution within the gut microbiome of individual people

Zhao, S.; Lieberman, T. D.; Poyet, M.; Groussin, M.; Gibbons, S. M.; Xavier, R. J.; Alm, E. J.

10.1101/208009 — evolutionary biology — Posted on 2017-10-24

436 Competition between microtubule-associated proteins directs motor transport

Monroy, B. Y.; Sawyer, D. L.; Ackermann, B. E.; Borden, M. M.; Tan, T. C.; Ori-McKenney, K. M.

10.1101/180935 — cell biology — Posted on 2017-10-24

437 Single-cell absolute contact probability detection reveals that chromosomes are organized by multiple, low-frequency yet specific interactions

Cattoni, D. I. I.; Cardozo Gizzi, A. M.; Georgieva, M.; Di Stefano, M.; Valeri, A.; Chamousset, D.; Houbron, C.; Dejardin, S.; Fiche, J.-B.; Gonzalez, I.; Chang, J.-M.; Sexton, T.; Marti-Renom, M. A.; Bantignies, F.; Cavalli, G.; Nollmann, M.

10.1101/159814 — biophysics — Posted on 2017-10-24

438 Genome-Wide Mining, Characterization and Development of miRNA-SSRs in Arabidopsis thaliana

Kumar, A.; Chauhan, A.; Kompelli, S. K.; Gahlaut, V.; Ijaq, J.; Singh, K. P.; Gajula, M. P.; Suravajhala, P.; Mishra, A.; Balyan, H. S.; Gupta, P. K.

10.1101/203851 — bioinformatics — Posted on 2017-10-24

439 A probabilistic framework to dissect functional cell-type-specific regulatory elements and risk loci underlying the genetics of complex traits

Li, Y.; Davila-Velderrain, J.; Kellis, M.

10.1101/059345 — bioinformatics — Posted on 2017-10-24

440 Improving the Generation and Selection of Virtual Populations in Quantitative Systems Pharmacology Models

Rieger, T. R.; Allen, R. J.; Bystricky, L.; Chen, Y.; Colopy, G.; Cui, Y.; Gonzalez, A.; Liu, Y.; White, R.; Everett, R.; Banks, H. T.; Musante, C. J.

10.1101/196089 — pharmacology and toxicology — Posted on 2017-10-24

441 Joint analysis of area and thickness as a replacement for the analysis of cortical volume

Winkler, A. M.; Greve, D. N.; Bjuland, K. J.; Nichols, T. E.; Sabuncu, M. R.; Haberg, A. K.; Skranes, J.; Rimol, L. M.

10.1101/074666 — neuroscience — Posted on 2017-10-24

442 Experience-dependent modulation of behavioral features in sensory navigation of nematodes and bats revealed by machine learning

Yamazaki, S. J.; Ikejiri, Y.; Hiramatsu, F.; Fujita, K.; Tanimoto, Y.; Yamazoe-Umemoto, A.; Yamada, Y.; Hashimoto, K.; Hiryu, S.; Maekawa, T.; Kimura, K. D.

10.1101/198879 — neuroscience — Posted on 2017-10-24

443 A fast immune priming that confers a complete infection resistance on silkworm (Bombyx mori)

Miyashita, A.

10.1101/205369 — immunology — Posted on 2017-10-24

444 Dynamics of pollen tube growth and embryo sac development in Pozna Plava plum cultivar related to fruit set

Đorđevic, M.; Cerovic, R.; Radicevic, S.; Nikolic, D.; Milosevic, N.; Glisic, I.; Maric, S.; Lukic, M.

10.1101/208108 — plant biology — Posted on 2017-10-24

445 Image segmentation based on relative motion and relative disparity cues in topographically organized areas of human visual cortex

Kohler, P. J.; Cottereau, B.; Norcia, A. M.

10.1101/208033 — neuroscience — Posted on 2017-10-24

446 Cerebral blood flow predicts differential neurotransmitter activity

Dukart, J.; Holiga, S.; Chatham, C.; Hawkins, P.; Forsyth, A.; McMillan, R.; Myers, J.; Lingford-Hughes, A.; Nutt, D.; Merlo-Pich, E.; Risterucci, C.; Umbricht, D.; Boak, L.; Schobel, S.; Liu, T.; Mehta, M.; Zelaya, F.; Williams, S.; Brown, G.; Paulus, M.; Honey, G.; Muthukumaraswamy, S.; Hipp, J.; Bertolino, A.; Sambataro, F.

10.1101/207407 — neuroscience — Posted on 2017-10-24

447 Objective but not subjective fatigue increases cognitive task avoidance

Benoit, C.-E.; Solopchuk, O.; Borragan, G.; Carbonnelle, A.; Van Durme, S.; Zenon, A.

10.1101/208322 — neuroscience — Posted on 2017-10-24

448 Novel prosthecate bacteria from the candidate phylum Acetothermia revealed by culture-independent genomics and advanced microscopy

Hao, L.-P.; McIlroy, S. J.; Kirkegaard, R. H. H.; Karst, S. M.; Fernando, W. E. Y.; Aslan, H.; Meyer, R. L.; Albertsen, M.; Nielsen, P. H.; Dueholm, M. S.

10.1101/207811 — microbiology — Posted on 2017-10-24

449 Leveraging Transcriptomics Data for Genomic Prediction Models in Cassava

Lozano, R.; Pino Del Carpio, D.; Kayondo, S. I.; Amuge, T.; Adebo, O. A.; Ferguson, M.; Jannink, J.-L.

10.1101/208181 — genomics — Posted on 2017-10-24

450 QTLseqr: An R package for bulk segregant analysis with next-generation sequencing

Mansfeld, B.; Grumet, R.

10.1101/208140 — genomics — Posted on 2017-10-24

451 Genetic analysis of de novo variants reveals sex differences in complex and isolated congenital diaphragmatic hernia and indicates MYRF as a candidate gene

Qi, H.; Yu, L.; Zhou, X.; Kitaygorodsky, A.; Wynn, J.; Zhu, N.; Aspelund, G.; Lim, F. Y.; Crombleholme, T.; Cusick, R.; Azarow, K.; Danko, M. E.; Chung, D.; Warner, B. W.; Mychaliska, G. B.; Potoka, D.; Wagner, A. J.; ElFiky, M.; Nickerson, D. A.; Bamshad, M. J.; Wilson, J. M.; High, F. A.; Longoni, M.; Donahoe, P.; Chung, W. K.; Shen, Y.

10.1101/206037 — genomics — Posted on 2017-10-24

452 Distinguishing genetic correlation from causation across 52 diseases and complex traits

O'Connor, L. J.; Price, A. L.

10.1101/205435 — genetics — Posted on 2017-10-24

453 Novel Techniques To Study Ancient Micro Amber From Tropical Beach Sand Reveal A Treasurehouse Of Exceptionally Well Preserved Fossilized Microfungi

Dabolkar, S.; Kamat, N.

10.1101/207977 — evolutionary biology — Posted on 2017-10-24

454 Molecular mechanism of cell-cell adhesion mediated by cadherin-23

Singaraju, G. S.; Kumar, A.; Samuel, J. S.; Sagar, A.; Hazra, J. P.; Sannigrahi, M. K.; Yennamalli, R. M.; Ashish, F. N. U.; Rakshit, S.

10.1101/208272 — biophysics — Posted on 2017-10-24

455 Repetitive DNA reeling by the Cascade-Cas3 complex in nucleotide unwinding steps

Loeff, L.; Brouns, S. J. J.; Joo, C.

10.1101/207886 — biophysics — Posted on 2017-10-24

456 Scaling read aligners to hundreds of threads on general-purpose processors

Langmead, B.; Wilks, C.; Antonescu, V.; Charles, R.

10.1101/205328 — bioinformatics — Posted on 2017-10-24

457 Relative evolutionary rate inference in HyPhy with LEISR

Spielman, S. J.; Pond, S. L. K.

10.1101/206011 — bioinformatics — Posted on 2017-10-24

458 Retinal specializations to a micro-predatory and crypto-benthic life-style in the Mediterranean triplefin blenny Tripterygion delaisi

Fritsch, R.; Collin, S. P.; Michiels, N. K.

10.1101/208298 — animal behavior and cognition — Posted on 2017-10-24

459 Molecular Identification of some Indian Muscid flies (Diptera: Muscidae) based on mitochondrial gene COII

Singh, D.; Achint, R.

10.1101/208314 — molecular biology — Posted on 2017-10-24

460 Meaning Guides Attention in Real-World Scenes: Evidence from Eye Movements and Meaning Maps

Henderson, J. M.; Hayes, T. R.

10.1101/207076 — neuroscience — Posted on 2017-10-23

461 BoostMe accurately predicts DNA methylation values in whole-genome bisulfite sequencing of multiple human tissues

Zou, L. S.; Erdos, M. R.; Taylor, D. L.; Chines, P. S.; Varshney, A.; Parker, S. C. J.; Collins, F. S.; Didion, J. P.

10.1101/207506 — genomics — Posted on 2017-10-23

462 A most wanted list of conserved protein families with no known domains

Wyman, S. K.; Avila-Herrera, A.; Nayfach, S.; Pollard, K. S.

10.1101/207985 — genomics — Posted on 2017-10-23

463 Accelerated DNA methylation aging and increased resilience in veterans: the biological cost for soldiering on

Mehta, D.; Bruenig, D.; Lawford, B.; Harvey, W.; Carrillo-Roa, T.; Morris, C. P.; Jovanovic, T.; Young, R. M.; Binder, E. B.; Voisey, J.

10.1101/207688 — genomics — Posted on 2017-10-23

464 Contribution of transition and stabilization processes to speciation is a function of the ancestral trait state and selective environment in Hakea

Lamont, B. B.; El-Ahmir, S.-h. M.; Lim, S. L.; Groom, P. K.; He, T.

10.1101/207373 — ecology — Posted on 2017-10-23

465 Evidence of evolutionary selection for co-translational folding

Jacobs, W. M.; Shakhnovich, E. I.

10.1101/121871 — biophysics — Posted on 2017-10-23

466 Assembly and translocation of a CRISPR-Cas primed acquisition complex

Brown, M. W.; Dillard, K. E.; Xiao, Y.; Dolan, A. E.; Hernandez, E. T.; Dahlhauser, S.; Kim, Y.; Myler, L. R.; Anslyn, E.; Ke, A.; Finkelstein, I.

10.1101/208058 — biophysics — Posted on 2017-10-23

467 geck: trio-based comparative benchmarking of variant calls

Komar, P.; Kural, D.

10.1101/208116 — bioinformatics — Posted on 2017-10-23

468 chewBBACA: A complete suite for gene-by-gene schema creation and strain identification

Silva, M.; Machado, M. P.; Silva, D. N.; Rossi, M.; Moran-Gilad, J.; Santos, S.; Ramirez, M.; Carrico, J. A.

10.1101/173146 — bioinformatics — Posted on 2017-10-23

469 Programmable RNA recognition using a CRISPR-associated Argonaute

Lapinaite, A.; Doudna, J. A.; Cate, J.

10.1101/208041 — biochemistry — Posted on 2017-10-23

470 Evolution of human, chicken, alligator, frog and zebrafish mineralocorticoid receptors: Allosteric influence on steroid specificity

Katsu, Y.; Oka, K.; Baker, M. E.

10.1101/151233 — evolutionary biology — Posted on 2017-10-23

471 Profiling G protein-coupled receptors of Fasciola hepatica identifies orphan rhodopsins unique to phylum Platyhelminthes

McVeigh, P.; McCammick, E.; McCusker, P.; Wells, D.; Hodgkinson, J.; Paterson, S.; Mousley, A.; Marks, N. J.; Maule, A. G.

10.1101/207316 — bioinformatics — Posted on 2017-10-23

472 Down Feather Structure Varies Between High And Low Elevation Male Andean Torrent Ducks (Merganetta armata)

Cheek, R. G.; Alza, L.

10.1101/207555 — zoology — Posted on 2017-10-23

473 Calling song maturity in two-spotted cricket, Gryllus bimaculatus: its patterns and a possible physical explanation

Miyashita, A.

10.1101/207712 — zoology — Posted on 2017-10-23

474 A multi-state model of chemoresistance to characterize phenotypic dynamics in breast cancer

Howard, G. R.; Johnson, K. E.; Rodriguez Ayala, A.; Yankeelov, T. E.; Brock, A.

10.1101/207605 — systems biology — Posted on 2017-10-23

475 Stimulation of the final cell cycle in the stomatal lineage by the cyclin CYCD7;1 under regulation of the MYB transcription factor FOUR-LIPS

Patell-Socha, F.; Newman, D.; Lee, E.; Xie, Z.; Collins, C.; Grotewold, E.; Murray, J.; Dewitte, W.

10.1101/207845 — plant biology — Posted on 2017-10-23

476 Lineage and stage-specific expressed CYCD7;1 coordinates the single symmetric division that creates stomatal guard cells

Weimer, A. K.; Matos, J. L.; Dewitte, W.; Murray, J.; Bergmann, D. C.

10.1101/207837 — plant biology — Posted on 2017-10-23

477 Distinct contributions of functional and deep neural network features to scene representation in brain and behavior

Groen, I.; Greene, M. R.; Baldassano, C.; Fei-Fei, L.; Beck, D. M.; Baker, C. I.

10.1101/207530 — neuroscience — Posted on 2017-10-23

478 Selective attention gates the interactive crossmodal coupling between cortical sensory systems

Convento, S.; Rahman, M. S.; Yau, J. M.

10.1101/207548 — neuroscience — Posted on 2017-10-23

479 How Cognitive and Reactive Fear Circuits Optimize Escape Decisions in Humans

Qi, S.; Sun, J.; Guo, F.; Daw, N.; Hassabis, D.; Mobbs, D.

10.1101/207936 — neuroscience — Posted on 2017-10-23

480 From Cohorts to Molecules: Adverse Impacts of Endocrine Disrupting Mixtures

Birgersson, L.; Borbely, G.; Caporale, N.; Germain, P.-L.; Leemans, M.; Rendel, F.; D'Agostino, G.; Bressan, R. B.; Cavallo, F.; Chorev, N. E.; Kos, V. M.; Lazzarin, M.; Pollard, S.; Sundstrom, B.; Tobon, A. L.; Trattaro, S.; Zanella, M.; Bergman, A.; Damdimopoulou, P.; Jonsson, M.; Kiess, W.; Kitraki, E.; Kiviranta, H.; Oberg, M.; Rantakkoko, P.; Ruden, C.; Soder, O.; Bornehag, C.-G.; Demeneix, B.; Fini, J.-B.; Gennings, C.; Nanberg, E.; Ruegg, J.; Sturve, J.; Testa, G.

10.1101/206664 — molecular biology — Posted on 2017-10-23

481 Genome-wide association study of body fat distribution identifies novel loci and sex-specific effects

Rask-Andersen, M.; Karlsson, T.; Ek, W. E.; Johansson, A.

10.1101/207498 — genetics — Posted on 2017-10-23

482 Pseudo Dollo models for the evolution of binary characters along a tree

Bouckaert, R.; Robbeets, M.

10.1101/207571 — evolutionary biology — Posted on 2017-10-23

483 Zebrafish yolk syncytial nuclei migrate along a dynamic microtubule network

Fei, Z.; Bae, K.; Parent, S.; Goodwin, K.; Tanentzapf, G.; Bruce, A.

10.1101/207795 — developmental biology — Posted on 2017-10-23

484 HebbPlot: An intelligent tool for learning and visualizing chromatin mark signatures

Girgis, H. Z.; Velasco, A.

10.1101/207670 — bioinformatics — Posted on 2017-10-23

485 ascend: R package for analysis of single cell RNA-seq data

Senabouth, A.; Lukowski, S.; Alquicira, J.; Andersen, S.; Mei, X.; Nguyen, Q.; Powell, J.

10.1101/207704 — bioinformatics — Posted on 2017-10-23

486 Elucidation of dose-dependent transcriptional events immediately following ionizing radiation exposure

Rouchka, E. C.; Flight, R. M.; Fasciotto, B. H.; Estrada, R.; Eaton, J. W.; Patibandla, P. K.; Waigel, S. J.; Li, D.; Kirtley, J. K.; Sethu, P.; Keynton, R. S.

10.1101/207951 — bioinformatics — Posted on 2017-10-23

487 Visualization of ligand-induced transmembrane signalling in the full-length human insulin receptor

Gutmann, T.; Kim, K. H.; Grzybek, M.; Walz, T.; Coskun, U.

10.1101/207928 — biochemistry — Posted on 2017-10-23

488 Learning to perform auditory discriminations from observation is efficient but less robust than learning from experience

Narula, G.; Herbst, J.; Hahnloser, R.

10.1101/207829 — animal behavior and cognition — Posted on 2017-10-23

489 Identification and characterization of Gypsophila paniculata color morphs in Sleeping Bear Dunes National Lakeshore, MI, USA.

Yang, M. L.; Rice, E.; Leimbach-Mas, H.; Partridge, C. G.

10.1101/201350 — plant biology — Posted on 2017-10-23

490 Elucidating relations between fMRI, ECoG and EEG through a common natural stimulus

Haufe, S.; DeGuzman, P.; Henin, S.; Arcaro, M.; Honey, C. J.; Hasson, U.; Parra, L. C.

10.1101/207456 — neuroscience — Posted on 2017-10-23

491 Hub connectivity, neuronal diversity, and gene expression in the C. elegans connectome

Arnatkeviciute, A.; Fulcher, B. D.; Pocock, R.; Fornito, A.

10.1101/207134 — neuroscience — Posted on 2017-10-23

492 Learning-induced sequence reactivation during sharp-wave ripples: a computational study

Malerba, P.; Tsimring, K.; Bazhenov, M.

10.1101/207894 — neuroscience — Posted on 2017-10-23

493 Csde1 cooperates with Strap to control translation of erythroid transcripts

Moore, K. S.; Yagci, N.; van Alphen, F.; Meijer, A. B.; 't Hoen, P. A. C.; von Lindern, M. M.

10.1101/203539 — molecular biology — Posted on 2017-10-23

494 High degree of virulence gene diversity in Streptococcus pyogenes isolated in Central Italy

Bencardino, D.; Di Luca, M. C.; Petrelli, D.; Prenna, M.; Vitali, L. A.

10.1101/207803 — microbiology — Posted on 2017-10-23

495 CRISPR-DS: An efficient, low DNA input method for ultra-accurate sequencing

Nachmanson, D.; Lian, S.; Schmidt, E. K.; Hipp, M. J.; Baker, K. T.; Zhang, Y.; Tretiakova, M.; Loubet-Senear, K.; Kohrn, B. F.; Salk, J. J.; Kennedy, S. R.; Risques, R. A.

10.1101/207027 — genomics — Posted on 2017-10-23

496 Transcription factor activity rhythms and tissue-specific chromatin interactions explain circadian gene expression across organs.

Yeung, J.; Mermet, J.; Jouffe, C.; Marquis, J.; Charpagne, A.; Gachon, F.; Naef, F.

10.1101/207787 — genomics — Posted on 2017-10-23

497 Trends in dissolved organic matter cycling, sediment microbiomes, and methylmercury production across vegetation heterogeneity in a Great Lakes wetland

Graham, E. B.; Knelman, J. E.; Gabor, R. S.; Schooler, S.; MCKNIGHT, D. M.; Nemergut, D. R.

10.1101/072017 — ecology — Posted on 2017-10-23

498 Bipolar filaments of human nonmuscle myosin 2-A and 2-B have distinct motile and mechanical properties

Melli, L.; Billington, N.; Sun, S. A.; Bird, J.; Nagy, A.; Friedman, T. B.; Takagi, Y.; Sellers, J. R.

10.1101/207514 — biophysics — Posted on 2017-10-23

499 Geometry of antiparallel microtubule bundles regulates relative sliding and stalling by PRC1 and Kif4A

Wijeratne, S.; Subramanian, R.

10.1101/207696 — biophysics — Posted on 2017-10-23

500 A reliable and unbiased human protein network with the disparity filter

Alanis-Lobato, G.; Andrade-Navarro, M. A.

10.1101/207761 — bioinformatics — Posted on 2017-10-23

501 MeShClust: an intelligent tool for clustering DNA sequences

James, B. T.; Luczak, B. B.; Girgis, H. Z.

10.1101/207720 — bioinformatics — Posted on 2017-10-23

502 Mapping of the Fondaparinux Binding Site of JR-FL gp120 by High Resolution Hydroxyl Radical Protein Footprinting and Computational Docking

Misra, S. K.; Sood, A.; Soares, P. A.; Pomin, V. H.; Woods, R. J.; Sharp, J. S.

10.1101/207910 — biochemistry — Posted on 2017-10-23

503 Effects of gamification and active listening on short-term sound localization training in virtual reality

Steadman, M. A.; Kim, C.; Lestang, J.-H.; Goodman, D. F. M.; Picinali, L.

10.1101/207753 — animal behavior and cognition — Posted on 2017-10-23

504 Coral Symbiodinium community composition across the Belize Mesoamerican Barrier Reef System is influenced by host species and thermal variability

Baumann, J.; Davies, S. W.; Aichelman, H. E.; Castillo, K. D.

10.1101/154179 — molecular biology — Posted on 2017-10-23

505 Heritable variation in bleaching responses and its functional genomic basis in reef-building corals (Orbicella faveolata)

Dziedzic, K.; Elder, H.; Tavalire, H. F.; Meyer, E.

10.1101/185595 — evolutionary biology — Posted on 2017-10-23

506 MatchMiner: An open source computational platform for real-time matching of cancer patients to precision medicine clinical trials using genomic and clinical criteria

Lindsay, J.; Del Vecchio Fitz, C.; Zwiesler, Z.; Kumari, P.; Van Der Veen, B.; Monrose, T.; Mazor, T.; Barry, S.; Albayrak, A.; Tung, M.; Do, K.; Hector-Barry, S.; Beardslee, B.; Shapiro, G.; Methot, J.; Sholl, L.; MacConaill, L. E.; Lindeman, N.; Johnson, B.; Rollins, B.; Sander, C.; Hassett, M.; Cerami, E.

10.1101/199489 — bioinformatics — Posted on 2017-10-23

507 The Reproducibility Of Research And The Misinterpretation Of P Values

Colquhoun, D.

10.1101/144337 — scientific communication and education — Posted on 2017-10-23

508 Mapping Cortical Brain Asymmetry in 17,141 Healthy Individuals Worldwide via the ENIGMA Consortium

Kong, X.-Z.; Mathias, S. R.; Guadalupe, T.; Abe, C.; Agartz, I.; Akudjedu, T. N.; Aleman, A.; Alhusaini, S.; Allen, N. B.; Ames, D.; Andreassen, O. A.; Vasquez, A. A.; Armstrong, N. J.; Bergo, F.; Bastin, M. E.; Batalla, A.; Bauer, J.; Baune, B.; Baur, R.; Biederman, J.; Blaine, S. K.; Boedhoe, P.; Boen, E.; Bose, A.; Bralten, J.; Brandeis, D.; Brem, S.; Brodaty, H.; Bröhl, H.; Brooks, S. J.; Buitelaar, J.; Bürger, C.; Bülow, R.; Calhoun, V.; Calvo, A.; Canales-Rodriguez, E. J.; Canive, J. M.; Cannon, D. M.; Caparelli, E. C.; Castellanos, F. X.; Cavalleri, G. L.; Cendes

10.1101/196634 — neuroscience — Posted on 2017-10-23

509 A duplex MIPs-based biological-computational cell lineage discovery platform

Tao, L.; Raz, O.; Marx, Z.; Biezuner, T.; Amir, S.; Milo, L.; Adar, R.; Onn, A.; Chapal-Ilani, N.; Berman, V.; Levy, R.; Oron, B.; Shapiro, E.

10.1101/191296 — systems biology — Posted on 2017-10-23

510 Naked mole-rat acid-sensing ion channel 3 forms non-functional homomers, but functional heteromers

Schuhmacher, L.-N.; Callejo, G.; Srivats, S.; Smith, E. S. J.

10.1101/166272 — neuroscience — Posted on 2017-10-23

511 PTE, a novel module to target Polycomb Repressive Complex 1 to the Cyclin D2 oncogene.

Cameron, S. R.; Nandi, S.; Kahn, T. G.; Barrasa, J. I.; Stenberg, P.; Schwartz, Y. B.

10.1101/177097 — molecular biology — Posted on 2017-10-23

512 Drivers of genetic diversity in secondary metabolic gene clusters within a fungal species

Lind, A. L.; Wisecaver, J. H.; Lameiras, C.; Wiemann, P.; Palmer, J. M.; Keller, N. P.; Rodrigues, F.; Goldman, G. H.; Rokas, A.

10.1101/149856 — genomics — Posted on 2017-10-23

513 Ancient exapted transposable elements promote nuclear enrichment of long noncoding RNAs

Carlevaro-Fita, J.; Das, M.; Polidori, T.; Navarro, C.; Johnson, R.

10.1101/189753 — genomics — Posted on 2017-10-23

514 Genome-wide analysis of risk-taking behaviour and cross-disorder genetic correlations in 116,255 individuals from the UK Biobank cohort

Strawbridge, R. J.; Ward, J.; Cullen, B.; Tunbridge, E. M.; Hartz, S.; Bierut, L.; Horton, A.; Bailey, M. E. S.; Graham, N.; Ferguson, A.; Lyall, D. M.; Mackay, D.; Pidgeon, L. M.; Cavanagh, J.; Pell, J. P.; O'Donovan, M.; Escott-Price, V.; Harrison, P. J.; Smith, D. J.

10.1101/177014 — genetics — Posted on 2017-10-23

515 Electrical Stimulus Artifact Cancellation and Neural Spike Detection on Large Multi-Electrode Arrays

Mena, G. E.; Grosberg, L. E.; Madugula, S.; Hottowy, P.; Litke, A.; Cunningham, J.; Chichilnisky, E.; Paninski, L.

10.1101/089912 — neuroscience — Posted on 2017-10-23

516 RGBM: Regularized Gradient Boosting Machines For The Identification of Transcriptional Regulators Of Discrete Glioma Subtypes

Mall, R.; Cerulo, L.; Kunji, K.; Bensmail, H.; Sabedot, T.; Noushmehr, H.; Iavarone, A.; Ceccarelli, M.

10.1101/132670 — bioinformatics — Posted on 2017-10-23

517 eGARD: Extracting associations between genomic anomalies and drug responses from text

Mahmood, A. S. M. A.; Rao, S.; McGarvey, P.; Wu, C.; Madhavan, S.; Vijay-Shanker, K.

10.1101/148833 — bioinformatics — Posted on 2017-10-23

518 Delirium, frailty and mortality: interactions in a prospective study of hospitalized older people

Dani, M.; Owen, L.; Jackson, T.; Rockwood, K.; Sampson, E.; Davis, D.

10.1101/207621 — epidemiology — Posted on 2017-10-23

519 Frailty index as a predictor of all-cause and cause-specific mortality in a Swedish population-based cohort

Jiang, M.; Foebel, A. D.; Kuja-Halkola, R.; Karlsson, I.; Pedersen, N. L.; Hagg, S.; Jylhava, J.

10.1101/207381 — epidemiology — Posted on 2017-10-23

520 Universal transcriptomic signature of age reveals temporal scaling of Caenorhabditis elegans aging trajectories

Tarkhov, A. E.; Alla, R.; Ayyadevara, S.; Pyatnitskiy, M.; Menshikov, L.; Shmookler Reis, R.; Fedichev, P. O.

10.1101/207647 — genomics — Posted on 2017-10-23

521 Modelling isoscapes using mixed models

Courtiol, A.; Rousset, F.

10.1101/207662 — ecology — Posted on 2017-10-23

522 Bcl-xL as a poor prognostic biomarker and predictor of response to adjuvant chemotherapy specifically in BRAF-mutant stage II and III colon cancer

Dunne, P. D.; Coleman, H. G.; Bankhead, P.; Alderdice, M.; Gray, R. T.; McQuaid, S.; Bingham, V.; Loughrey, M. B.; James, J. A.; McCorry, A. M.; Gilmore, A.; Holohan, C.; Klingbiel, D.; Tejpar, S.; Johnston, P. G.; McArt, D. G.; Di Nicolantonio, F.; Longley, D. B.; Lawler, M.

10.1101/207639 — cancer biology — Posted on 2017-10-23

523 Imbalanced amplification: A mechanism of amplification and suppression from local imbalance of excitation and inhibition in cortical circuits

Ebsch, C.; Rosenbaum, R.

10.1101/201269 — neuroscience — Posted on 2017-10-22

524 Carbon pool trends and dynamics within a subtropical peatland during long-term restoration

Julian, P.; Gerber, S.; Wright, A. L.; Gu, B.; Osborne, T. Z.

10.1101/196907 — ecology — Posted on 2017-10-22

525 Proteolytic control of centrosome activity by APC/C-Polo maintains oocyte fate in Drosophila

Braun, A. L.; Meghini, F.; Villa-Fombuena, G.; Fernandez, E. M.; Guermont, M.; Martin-Bermudo, M. D.; Gonzalez-Reyes, A.; Kimata, Y.

10.1101/202465 — developmental biology — Posted on 2017-10-22

526 A Deep Learning Model for Predicting Tumor Suppressor Genes and Oncogenes from PDB Structure

Tavanaei, A.; Anandanadarajah, N.; Maida, A. S.; Loganantharaj, R.

10.1101/177378 — bioinformatics — Posted on 2017-10-22

527 Elucidating relations between fMRI, ECoG and EEG through a common natural stimulus

Haufe, S.; DeGuzman, P.; Henin, S.; Arcaro, M.; Honey, C. J.; Hasson, U.; Parra, L. C.

10.1101/207456 — neuroscience — Posted on 2017-10-22

528 The ABCE1 capsid assembly pathway is conserved between primate lentiviruses and the non-primate lentivirus feline immunodeficiency virus

Reed, J. C.; Westergreen, N.; Barajas, B. C.; Ressler, D.; Phuong, D. J.; Swain, J. V.; Lingappa, V. R.; Lingappa, J. R.

10.1101/183848 — microbiology — Posted on 2017-10-22

529 Majority of choice-related variability in perceptual decisions is present in early sensory cortex

Michelson, C.; Pillow, J.; Seidemann, E.

10.1101/207357 — neuroscience — Posted on 2017-10-22

530 Elucidating relations between fMRI, ECoG and EEG through a common natural stimulus

Haufe, S.; DeGuzman, P.; Henin, S.; Arcaro, M.; Honey, C. J.; Hasson, U.; Parra, L. C.

10.1101/207456 — neuroscience — Posted on 2017-10-22

531 Interleukins 4 and 13 Induce Exon Skipping of Mutant Dystrophin Pre-mRNA to Restore Dystrophin Production

Low, S.; Fan, C.-M.

10.1101/207480 — cell biology — Posted on 2017-10-22

532 High contrast staining for serial block face scanning electron microscopy without uranyl acetate

Odriozola, A.; Llodra, J.; Radecke, J.; Ruegsegger, C.; Tschanz, S.; Saxena, S.; Rohr, S.; Zuber, B.

10.1101/207472 — cell biology — Posted on 2017-10-22

533 Signaling Networks and Dynamics of Allosteric Transitions in Bacterial Chaperonin GroEL: Implications for Iterative Annealing of Misfolded Proteins

Thirumalai, D.; Hyeon, C.

10.1101/207431 — biophysics — Posted on 2017-10-22

534 IMPPAT: A curated database of Indian Medicinal Plants, Phytochemistry And Therapeutics

Mohanraj, K.; Karthikeyan, B. S.; Vivek-Ananth, R. P.; Bharath Chand, R. P.; Aparna, S. R.; Mangalapandi, P.; Samal, A.

10.1101/206995 — bioinformatics — Posted on 2017-10-22

535 High Peak Density Artifacts in Fourier Transform Mass Spectra and their Effects on Data Analysis

Mitchell, J. M.; Flight, R. M.; Wang, Q. J.; Kang, W.-Y.; Higashi, R. M.; Fan, T. W.- M.; Lane, A. N.; Moseley, H. N. B.

10.1101/191205 — systems biology — Posted on 2017-10-22

536 Scientific Theories and Artificial Intelligence

Desjardins-Proulx, P.; Poisot, T.; Gravel, D.

10.1101/161125 — scientific communication and education — Posted on 2017-10-22

537 Improving the quality of combined EEG-TMS neural recordings: Introducing the Coil Spacer

Ruddy, K. L.; Woolley, D. G.; Mantini, D.; Balsters, J.; Enz, N.; Wenderoth, N.

10.1101/170431 — neuroscience — Posted on 2017-10-22

538 Systematic Dissection of Sequence Elements Controlling σ70 Promoters Using a Genomically-Encoded Multiplexed Reporter Assay in E. coli

Urtecho, G.; Tripp, A. D.; Insigne, K.; Kim, H.; Kosuri, S.

10.1101/207332 — molecular biology — Posted on 2017-10-22

539 Delirium symptoms are associated with decline in cognitive function between ages 53 to 69: findings from a British birth cohort study

Tsui, A.; Kuh, D.; Richards, M.; Davis, D.

10.1101/206631 — epidemiology — Posted on 2017-10-22

540 Profiling G protein-coupled receptors of Fasciola hepatica identifies orphan rhodopsins unique to phylum Platyhelminthes

McVeigh, P.; McCammick, E.; McCusker, P.; Wells, D.; Hodgkinson, J.; Paterson, S.; Mousley, A.; Marks, N. J.; Maule, A. G.

10.1101/207316 — bioinformatics — Posted on 2017-10-22

541 Distinct glycosaminoglycan chain length and sulfation patterns required for cellular uptake of Tau, Aβ, and α-Synuclein

Stopschinski, B. E.; Holmes, B. B.; Miller, G. M.; Vaquer-Alicea, J.; Hsieh-Wilson, L. C.; Diamond, M. I.

10.1101/207035 — neuroscience — Posted on 2017-10-21

542 Estradiol and luteinizing hormone reverse memory loss in phencyclidine model of schizophrenia: Evidence for hippocampal GABA action

Riordan, A. J.; Schaler, A. W.; Fried, J. B.; Paine, T. A.; Thornton, J. E.

10.1101/207159 — neuroscience — Posted on 2017-10-21

543 Subtle Changes in Clonal Dynamics Underlie the Age-Related Decline in Neurogenesis

Bast, L.; Calzolari, F.; Strasser, M.; Hasenauer, J.; Theis, F.; Ninkovic, J.; Marr, C.

10.1101/206938 — neuroscience — Posted on 2017-10-21

544 Integrin alpha 4/beta 1 (CD49d/CD29) is a component of the murine IgG3 receptor

Hawk, C. S.; Coelho, C.; de Oliveira, D. S. L.; Paredes, V.; Albuquerque, P.; Bocca, A. L.; dos Santos, A. C.; Rusakova, V.; Holemon, H.; Felipe, M. S. S.; Yagita, H.; Nicola, A. M.; Casadevall, A.

10.1101/207274 — immunology — Posted on 2017-10-21

545 Impact of non-LTR retrotransposons in the differentiation and evolution of Anatomically Modern Humans

Guichard, E.; Peona, V.; Malagoli-Tagliazucchi, G.; Abitante, L.; Jagoda, E.; Musella, M.; Ricci, M.; Rubio-Roldan, A.; Sarno, S.; Luiselli, D.; Pettener, D.; Taccioli, C.; Pagani, L.; Garcia-Perez, J. L.; Boattini, A.

10.1101/207241 — genomics — Posted on 2017-10-21

546 Complex effects of day and night temperature fluctuations on thermally plastic traits in an experimental model of adaptive seasonal plasticity.

Rodrigues, Y. K.; van Bergen, E.; Alves, F.; Duneau, D.; Beldade, P.

10.1101/207258 — evolutionary biology — Posted on 2017-10-21

547 Effects of demographic stochasticity and life-history strategies on times and probabilities to fixation: an individual-based model

Abu Awad, D.; Coron, C.

10.1101/207100 — evolutionary biology — Posted on 2017-10-21

548 Field evidence for manipulation of mosquito host selection by the human malaria parasite, Plasmodium falciparum

Vantaux, A.; Yao, F.; Hien, D. F.; Guissou, E.; Yameogo, B. K.; Gouagna, L.-C.; Fontenille, D.; Renaud, F.; Simard, F.; Constantini, C.; Thomas, F.; Mouline, K.; Roche, B.; Cohuet, A.; Dabire, K. R.; Lefevre, T.

10.1101/207183 — evolutionary biology — Posted on 2017-10-21

549 Coordinated morphogenesis through tension-induced planar polarity

Gillard, G.; Nicolle, O.; Brugiere, T.; Prigent, S.; Pinot, M.; Michaux, G.

10.1101/207209 — developmental biology — Posted on 2017-10-21

550 Explainable machine learning predictions to help anesthesiologists prevent hypoxemia during surgery

Lundberg, S. M.; Nair, B.; Vavilala, M. S.; Horibe, M.; Eisses, M. J.; Adams, T.; Liston, D. E.; Low, D. K.-W.; Newman, S.-F.; Kim, J.; Lee, S.-I.

10.1101/206540 — bioinformatics — Posted on 2017-10-21

551 Specific hippocampal representations are linked to generalized cortical representations in memory.

Yu, J. Y.; Liu, D. F.; Loback, A.; Grossrubatscher, I.; Frank, L. M.

10.1101/207142 — neuroscience — Posted on 2017-10-21

552 Hub connectivity, neuronal diversity, and gene expression in the C. elegans connectome

Arnatkeviciute, A.; Fulcher, B. D.; Pocock, R.; Fornito, A.

10.1101/207134 — neuroscience — Posted on 2017-10-21

553 Darwin Assembly: fast, efficient, multi-site bespoke mutagenesis.

Cozens, C.; Bernardes Pinheiro, V. B.

10.1101/207191 — molecular biology — Posted on 2017-10-21

554 Massive variation of short tandem repeats with functional consequences across strains of Arabidopsis thaliana.

Press, M. O.; McCoy, R. C.; Hall, A. N.; Akey, J. M.; Queitsch, C.

10.1101/145128 — genomics — Posted on 2017-10-21

555 CRISPR-DS: An efficient, low DNA input method for ultra-accurate sequencing

Nachmanson, D.; Lian, S.; Schmidt, E. K.; Hipp, M. J.; Baker, K. T.; Zhang, Y.; Tretiakova, M.; Loubet-Senear, K.; Kohrn, B. F.; Salk, J. J.; Kennedy, S. R.; Risques, R. A.

10.1101/207027 — genomics — Posted on 2017-10-21

556 Role of the pre-initiation complex in Mediator recruitment and dynamics

Knoll, E. R.; Zhu, Z. I.; Landsman, D.; Morse, R. H.

10.1101/207282 — genetics — Posted on 2017-10-21

557 Tissue-specific activities of the Fat1 cadherin cooperate to control neuromuscular morphogenesis

Helmbacher, F.

10.1101/207308 — developmental biology — Posted on 2017-10-21

558 DDK has a primary role in processing stalled replication forks to initiate downstream checkpoint signaling

Sasi, N. K.; Coquel, F.; Lin, Y.-L.; MacKeigan, J. P.; Pasero, P.; Weinreich, M.

10.1101/207266 — cell biology — Posted on 2017-10-21

559 Optical crosstalk in SPAD arrays for high-throughput single-molecule fluorescence spectroscopy

Ingargiola, A.; Segal, M.; Gulinatti, A.; Rech, I.; Labanca, I.; Maccagnani, P.; Ghioni, M.; Weiss, S.; Michalet, X.

10.1101/207118 — biophysics — Posted on 2017-10-21

560 Bioconda: A sustainable and comprehensive software distribution for the life sciences

Dale, R.; Grüning, B.; Sjödin, A.; Rowe, J.; Chapman, B. A.; Tomkins-Tinch, C. H.; Valieris, R.; The Bioconda Team, ; Köster, J.

10.1101/207092 — bioinformatics — Posted on 2017-10-21

561 So you think you can PLS-DA?

Perez, D. R.; Narasimhan, G.

10.1101/207225 — bioinformatics — Posted on 2017-10-21

562 Nucleosome rotational positioning is influenced by cis- and trans-acting factors

Wright, G. M.; Cui, F.

10.1101/207167 — bioinformatics — Posted on 2017-10-21

563 Light and growth form interact to shape stomatal ratio among British angiosperms

Muir, C. D.

10.1101/163873 — evolutionary biology — Posted on 2017-10-21

564 Association of a biomarker-based frailty index with telomere length in older US adults: Findings from NHANES 1999-2002

Bello, G. A.; Chiu, Y.-H. M.; Dumancas, G. G.

10.1101/191023 — epidemiology — Posted on 2017-10-21

565 Apolipoprotein-E (ApoE) ϵ4 and cognitive decline over the adult life course

Rawle, M.; Davis, D.; Bendayan, R.; Wong, A.; Kuh, D.; Richards, M.

10.1101/207233 — epidemiology — Posted on 2017-10-21

566 Delirium symptoms are associated with decline in cognitive function between ages 53 to 69: findings from a British birth cohort study.

Tsui, A.; Kuh, D.; Richards, M.; Davis, D.

10.1101/206631 — epidemiology — Posted on 2017-10-21

567 Distinct selection mechanisms for when predictions and rewards guide visual selective attention

Garner, K. G.; Raymond, J. E.

10.1101/188045 — neuroscience — Posted on 2017-10-21

568 A Bayesian Framework for Multiple Trait Colocalization from Summary Association Statistics

Giambartolomei, C.; Zhenli Liu, J.; Zhang, W.; Hauberg, M.; Shi, H.; Boocock, J.; Pickrell, J.; Jaffe, A. E.; CommonMind Consortium, ; Pasaniuc, B.; Roussos, P.

10.1101/155481 — genomics — Posted on 2017-10-21

569 Single-molecule theory of enzymatic inhibition predicts the emergence of inhibitor-activator duality

Robin, T.; Reuveni, S.; Urbakh, M.

10.1101/095562 — biophysics — Posted on 2017-10-21

570 Impact of global change on future Ebola emergence and epidemic potential in Africa

Redding, D.; Atkinson, P.; Cunningham, A.; Lo Iacono, G.; Moses, L.; Wood, J.; Jones, K.

10.1101/206169 — epidemiology — Posted on 2017-10-21

571 Enumerating the Economic Cost of Antimicrobial Resistance Per Antibiotic Consumed to Inform the Evaluation of Interventions Affecting their Use

Shrestha, P.; Cooper, B. S.; Coast, J.; Oppong, R.; Do, N. T. T.; Podha, T.; Guerin, P. J.; Wertheim, H. F.; Lubell, Y.

10.1101/206656 — epidemiology — Posted on 2017-10-21

572 Agent-based network model predicts strong benefits to youth-centered HIV treatment-as-prevention efforts

Mittler, J. E.; Murphy, J. T.; Stansfield, S.; Peebles, K.; Gottlieb, G. S.; Goodreau, S.; Herbeck, J. T.

10.1101/207126 — epidemiology — Posted on 2017-10-21

573 Reduced transmission of Mycobacterium africanum compared to Mycobacterium tuberculosis in urban West Africa

Asare, P.; Asante-Poku, A.; Prah, D. A.; Borrell, S.; Osei-Wusu, S.; Otchere, I. D.; Forson, A.; Adjapong, G.; Koram, K. A.; Gagneux, S.; Yeboah-Manu, D.

10.1101/206136 — epidemiology — Posted on 2017-10-21

574 Context-invariant encoding of reward location in a distinct hippocampal population

Gauthier, J. L.; Tank, D. W.

10.1101/207043 — neuroscience — Posted on 2017-10-20

575 Clinically-guided mutation screening of two families with hereditary retinal disease

Li, J.; Yiming, A.; Wang, P.

10.1101/207068 — molecular biology — Posted on 2017-10-21

576 Deep profiling of mouse splenic architecture with CODEX multiplexed imaging.

Goltsev, Y.; Samusik, N.; Kennedy-Darling, J.; Bhate, S.; Hale, M.; Vasquez, G.; Nolan, G.

10.1101/203166 — systems biology — Posted on 2017-10-20

577 Balancing Strengths and Weaknesses in Dimensional Psychiatry

Alexander, L. M.; Salum, G.; Swanson, J. M.; Milham, M. P.

10.1101/207019 — neuroscience — Posted on 2017-10-20

578 HSP90 inhibitors disrupt a transient HSP90-HSF1 interaction and identify a noncanonical model of HSP90-mediated HSF1 regulation

Kijima, T.; Prince, T. L.; Tigue, M.; Yim, K.; Schwartz, H.; Beebe, K.; Lee, S.; Budzynski, M.; Williams, H.; Trepel, J.; Sistonen, L.; Calderwood, S. K.; Neckers, L.

10.1101/207001 — biochemistry — Posted on 2017-10-20

579 The scent of the fly

Becher, P. G.; Lebreton, S.; Wallin, E. A.; Hedenstrom, E.; Borrero-Echeverry, F.; Bengtsson, M.; Jorger, V.; Witzgall, P.

10.1101/206375 — animal behavior and cognition — Posted on 2017-10-20

580 Complex versus simple models: ion-channel cardiac toxicity prediction

Mistry, H.

10.1101/206946 — pharmacology and toxicology — Posted on 2017-10-20

581 An olfactogenetic approach identifies olfactory neurons and brain centers directing negative oviposition decisions in Drosophila.

Chin, S. G.; Maguire, S. E.; Huoviala, P.; Jefferis, G. S. X. E.; Potter, C. J.

10.1101/206342 — neuroscience — Posted on 2017-10-20

582 Drosophila species learn dialects through communal living

Kacsoh, B. Z.; Bozler, J.; Bosco, G.

10.1101/206920 — genomics — Posted on 2017-10-20

583 Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests different ecological niches

Otchere, I. D.; Coscolla, M.; Sanchez-Buso, L.; Asante-Poku, A.; Meehan, C.; Osei-Wusu, S.; Forson, A.; Laryea, C.; Yahayah, A. I.; Baddoo, A.; Aboagye, S. Y.; Asare, P.; Loiseau, C.; Brites, D.; Borrell, S.; Gehre, F.; Beckert, P.; Kohl, T.; N'dira, S.; Beisel, C.; Antonio, M.; Ansa, G. A.; Niemann, S.; de Jong, B. C.; Parkhill, J.; Harris, S. R.; Gagneux, S.; Yeboah-Manu, D.

10.1101/202234 — genomics — Posted on 2017-10-20

584 Pathways-wide genetic risks in Chlamydial infections overlap between tissue tropisms: A genome-wide association scan

Roberts, C. h.; Ouberg, S.; Preston, M. D.; de Vries, H. J. C.; Holland, M. J.; Morre, S. A.

10.1101/205286 — genetics — Posted on 2017-10-20

585 Dynamic Architecture of DNA Repair Complexes and the Synaptonemal Complex at Sites of Meiotic Recombination

Woglar, A.; Villeneuve, A. M.

10.1101/206953 — genetics — Posted on 2017-10-20

586 Vulnerabilities of transcriptome-wide association studies

Wainberg, M.; Sinnott-Armstrong, N.; Knowles, D.; Golan, D.; Ermel, R.; Ruusalepp, A.; Quertermous, T.; Hao, K.; Bjorkegren, J. L. M.; Rivas, M. A.; Kundaje, A.

10.1101/206961 — genetics — Posted on 2017-10-20

587 Two distinct mechanisms silence chinmo in Drosophila neuroblasts and neuroepithelial cells to limit their self-renewal

Dillard, C.; Narbonne-Reveau, K.; Foppolo, S.; Lanet, E.; Maurange, C.

10.1101/206060 — developmental biology — Posted on 2017-10-20

588 NSD1 inactivation defines an immune cold, DNA hypomethylated subtype in squamous cell carcinoma

Brennan, K.; Shin, J. H.; Tay, J. K.; Prunello, M.; Gentles, A.; Sunwoo, J. B.; Gevaert, O.

10.1101/178608 — cancer biology — Posted on 2017-10-20

589 Free energy landscape for the entire transport cycle of triose-phosphate/phosphate translocator

Takemoto, M.; Lee, Y.; Ishitani, R.; Nureki, O.

10.1101/206912 — biophysics — Posted on 2017-10-20

590 Top-Down Feedback Controls Spatial Summation And Response Gain In Primate Visual Cortex

Nurminen, L.; Merlin, S.; Bijanzadeh, M.; Federer, F.; Angelucci, A.

10.1101/094680 — neuroscience — Posted on 2017-10-20

591 DNAJB1-PRKACA fusion kinase interacts with β-catenin and liver regenerative response to drive fibrolamellar hepatocellular carcinoma

Kastenhuber, E. R.; Lalazar, G.; Tschaharganeh, D. F.; Houlihan, S. L.; Baslan, T.; Chen, C.-C.; Requena, D.; Tian, S.; Bosbach, B.; Wilkinson, J. E.; Simon, S. M.; Lowe, S. W.

10.1101/192104 — cancer biology — Posted on 2017-10-20

592 In vivo cross-linking and transmembrane helix dynamics support a non-piston model of signaling within E. coli EnvZ

Yusuf, R.; Nguyen, T. L.; Heininger, A.; Lawrence, R. J.; Hall, B. A.; Draheim, R. R.

10.1101/206888 — biochemistry — Posted on 2017-10-20

593 Neural decoding of bistable sounds reveals an effect of intention on perceptual organization

Billig, A. J.; Davis, M. H.; Carlyon, R. P.

10.1101/206417 — neuroscience — Posted on 2017-10-20

594 Neurobehavioural Correlates of Obesity are Largely Heritable

Vainik, U.; Baker, T. B.; Alanis, J. C. G.; Dadar, M.; Michaud, A.; Misic, B.; Zeighami, Y.; Zhang, Y.; Collins, D. L.; Dagher, A.

10.1101/204917 — neuroscience — Posted on 2017-10-20

595 Parsing propagule pressure: Number, not size, of introductions drives colonization success in a novel environment

Koontz, M. J.; Oldfather, M. F.; Melbourne, B. A.; Hufbauer, R. A.

10.1101/108324 — ecology — Posted on 2017-10-20

596 Transcriptional control and exploitation of an immune-responsive family of retrotransposons in Arabidopsis

Deleris, A.; Zervudacki, J.; Yu, A.; Wang, J.; Drouaud, J.; Navarro, L.

10.1101/206813 — plant biology — Posted on 2017-10-20

597 Neural decoding of bistable sounds reveals an effect of intention on perceptual organization

Billig, A. J.; Davis, M. H.; Carlyon, R. P.

10.1101/206417 — neuroscience — Posted on 2017-10-20

598 Tracking Individual Differences in Perception by TMS-EEG Intrinsic Effective Connectivity

Mizuno, Y.; Kawasaki, M.; Shimono, M.; Miniussi, C.; Okazaki, Y. O.; Ueno, K.; Suzuki, C.; Asamizuya, T.; Cheng, K.; Kitajo, K.

10.1101/206797 — neuroscience — Posted on 2017-10-20

599 Overnight memory consolidation facilitates rather than interferes with new learning of similar materials - a study probing NMDA-receptors

Alizadeh Asfestani, M.; Braganza, E.; Schwidetzky, J.; Santiago, J. C. P.; Soekadar, S. R.; Born, J.; Feld, G. B.

10.1101/206771 — neuroscience — Posted on 2017-10-20

600 The Wisconsin Registry for Alzheimer’s Prevention: A Review of findings and current directions

Johnson, S. C.; Koscik, R. L.; Jonaitis, E. M.; Clark, L. R.; Mueller, K. D.; Berman, S. E.; Bendlin, B. B.; Engelman, C. D.; Okonkwo, O. C.; Hogan, K. J.; Asthana, S.; Carlsson, C. M.; Hermann, B. P.; Sager, M. A.

10.1101/206839 — neuroscience — Posted on 2017-10-20

601 SALP, a new single-stranded DNA library preparation method especially useful for the high-throughput characterization of chromatin openness states

Wu, J.; Dai, W.; Wu, L.; Wang, J.

10.1101/206854 — genomics — Posted on 2017-10-20

602 Correlation of gene expressions between nucleus and cytoplasm reflects single-cell physiology

Abdelmoez, M. N.; Iida, K.; Oguchi, Y.; Nishikii, H.; Yokokawa, R.; Kotera, H.; Uemura, S.; Santiago, J. G.; Shintaku, H.

10.1101/206672 — genomics — Posted on 2017-10-20

603 Explorations of the polygenic genetic architecture of flowering time in the worldwide Arabidopsis thaliana population

Zan, Y.; Carlborg, O.

10.1101/206706 — genetics — Posted on 2017-10-20

604 The molecular genetics of participation in the Avon Longitudinal Study of Parents and Children

Taylor, A.; Jones, H.; Sallis, H.; Euesden, J.; Stergiakouli, E.; Davies, N.; Zammit, S.; Lawlor, D. A.; Munafo, M. R.; Davey Smith, G.; Tilling, K.

10.1101/206698 — genetics — Posted on 2017-10-20

605 Life history effects on neutral polymorphism levels of autosomes and sex chromosomes

Amster, G.; Sella, G.

10.1101/206862 — evolutionary biology — Posted on 2017-10-20

606 Viral fitness predicts the magnitude and direction of perturbations in the infected host transcriptome

Cervera, H.; Ambros, S.; Bernet, G. P.; Rodrigo, G.; Elena, S.

10.1101/206789 — evolutionary biology — Posted on 2017-10-20

607 Mapping critical habitat of waterbirds in the Arctic for risk management in respect of IFC PS6

Hilarides, L.; Langendoen, T.; Flink, S.; van Leeuwen, M.; Steen, B.; Kondratyev, A.; Kolzsch, A.; Aarvak, T.; Kruckenberg, H.; Vangeluwe, D.; Todorov, E.; Harrison, A.; Rees, E.; Dokter, A.; Nolet, B.; Mundkur, T.

10.1101/206763 — ecology — Posted on 2017-10-20

608 Strong positive biodiversity-productivity relationships in a subtropical forest experiment

Huang, Y.; Chen, Y.; Castro-Izaguirre, N.; Baruffol, M.; Brezzi, M.; Lang, A.; Li, Y.; Haerdtle, W.; von Oheimb, G.; Yang, X.; Pei, K.; Both, S.; Liu, X.; Yang, B.; Eichenberg, D.; Assmann, T.; Bauhus, J.; Behrens, T.; Buscot, F.; Chen, X.-Y.; Chesters, D.; Ding, B.-Y.; Durka, W.; Erfmeier, A.; Fang, J.; Fischer, M.; Guo, L.-D.; Guo, D.; Gutknecht, J. L. M.; He, J.-S.; He, C.-L.; Hector, A.; Hoenig, L.; Hu, R.-Y.; Klein, A.-M.; Kuehn, P.; Liang, Y.; Michalski, S.; Scherer-Lorenzen, M.; Schmidt, K.; Scholten, T.; Schuldt, A.; Shi, X.; Tan, M.-Z.; Tang, Z.; Trogisch, S.; Wang, Z.; Welk, E.; Wirt

10.1101/206722 — ecology — Posted on 2017-10-20

609 Measurements of three-dimensional refractive index tomography and membrane deformability of live erythrocytes from Pelophylax nigromaculatus

Kim, G.; Lee, M.; Youn, S.; Lee, E.; Kwon, D.; Shin, J.; Lee, S.; Lee, Y. S.; Park, Y.

10.1101/206821 — biophysics — Posted on 2017-10-20

610 An Observational Study of Ballooning in Large Spiders: Nanoscale Multi-Fibres Enable Large Spiders’ Soaring Flight

Cho, M.; Neubauer, P.; Fahrenson, C.; Rechenberg, I.

10.1101/206334 — biophysics — Posted on 2017-10-20

611 Structural lipids enable the formation of functional oligomers of the eukaryotic purine symporter UapA

Pyle, E.; Kalli, A. C.; Amillis, S.; Hall, Z.; Hanyaloglu, A. C.; Diallinas, G.; Byrne, B.; Politis, A.

10.1101/206714 — biophysics — Posted on 2017-10-20

612 Ongoing brain rhythms shape I-wave properties in a computational model

Schaworonkow, N.; Triesch, J.

10.1101/205450 — neuroscience — Posted on 2017-10-20

613 Ongoing brain rhythms shape I-wave properties in a computational model

Schaworonkow, N.; Triesch, J.

10.1101/205450 — neuroscience — Posted on 2017-10-19

614 Changes in corticospinal excitability associated with motor learning by observing

McGregor, H. R.; Vesia, M.; Rinchon, C.; Chen, R.; Gribble, P.

10.1101/205385 — neuroscience — Posted on 2017-10-20

615 The relationship between reinforcement and explicit strategies during visuomotor adaptation

Codol, O.; Holland, P. J.; Galea, J. M.

10.1101/206284 — neuroscience — Posted on 2017-10-20

616 Simulation of visual perception and learning with a retinal prosthesis

Golden, J. R.; Erickson-Davis, C.; Cottaris, N. P.; Parthasarathy, N.; Rieke, F.; Brainard, D. H.; Wandell, B. A.; Chichilnisky, E. J.

10.1101/206409 — neuroscience — Posted on 2017-10-20

617 Clearing the Fungal FoG: Perseverance, a property distinct from resistance, is associated with clinical persistence

Rosenberg, A.; Ene, I. V.; Dahan, A.; Segal, E. S.; Colombo, A. L.; Bennett, R. J.; Berman, J. G.

10.1101/206359 — microbiology — Posted on 2017-10-20

618 The Polycomb-dependent epigenome controls β-cell dysfunction, dedifferentiation and diabetes

Lu, T. T.-H.; Heyne, S.; Dror, E.; Casas, E.; Leonhardt, L.; Boenke, T.; Yang, C.-H.; Sagar, ; Arrigoni, L.; Dalgaard, K.; Teperino, R.; Enders, L.; Selvaraj, M.; Ruf, M.; Raja, S. J.; Xie, H.; Boenisch, U.; Orkin, S. H.; Lynn, F.; Hoffman, B. G.; Grün, D.; Vavouri, T.; Lempradl, A.; Pospisilik, A.

10.1101/205641 — genomics — Posted on 2017-10-20

619 Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome

Panfilio, K. A.; Vargas Jentzsch, I. M.; Benoit, J. B.; Erezyilmaz, D.; Suzuki, Y.; Colella, S.; Robertson, H. M.; Poelchau, M. F.; Waterhouse, R. M.; Ioannidis, P.; Weirauch, M. T.; Hughes, D. S. T.; Murali, S. C.; Werren, J. H.; Jacobs, C. G. C.; Duncan, E. J.; Armisen, D.; Vreede, B. M. I.; Baa-Puyoulet, P.; Berger, C. S.; Chang, C.-c.; Chao, H.; Chen, M.-J. M.; Chen, Y.-T.; Childers, C. P.; Chipman, A. D.; Cridge, A. G.; Crumiere, A. J. J.; Dearden, P. K.; Didion, E. M.; Dinh, H.; doddapaneni, h.; Dolan, A.; Dugan-Perez, S.; Extavour, C. G.; Febvay, G.; Friedrich, M.; Ginzburg, N.; Han, Y.

10.1101/201731 — genomics — Posted on 2017-10-20

620 Locus-Specific Enhancer Hubs And Architectural Loop Collisions Uncovered From Single Allele DNA Topologies

Allahyar, A.; Vermeulen, C.; Bouwman, B.; Krijger, P.; Verstegen, M.; Geeven, G.; van Kranenburg, M.; Pieterse, M.; Straver, R.; Haarhuis, J.; Teunissen, H.; Renkens, I.; Kloosterman, W.; Rowland, B.; de Wit, E.; de Ridder, J.; de Laat, W.

10.1101/206094 — genetics — Posted on 2017-10-20

621 Heterogeneity in local density allows a positive evolutionary relationship between self-fertilisation and dispersal

Rodger, J. G.; Landi, P.; Hui, C.

10.1101/203042 — evolutionary biology — Posted on 2017-10-20

622 Plasmodium vivax-like genome sequences shed new insights into Plasmodium vivax biology and evolution

Gilabert, A.; Otto, T.; Rutledge, G.; Franzon, B.; Ollomo, B.; Arnathau, C.; Durand, P.; Moukodoum, N.; Okouga, A.-P.; Ngoubangoye, B.; Makanga, B.; Boudenga, L.; Paupy, C.; Renaud, F.; Prugnolle, F.; Rougeron, V.

10.1101/205302 — evolutionary biology — Posted on 2017-10-20

623 Blind estimation and correction of microarray batch effect

Varma, S.

10.1101/202952 — bioinformatics — Posted on 2017-10-20

624 Leveraging heterogeneity across multiple data sets increases accuracy of cell-mixture deconvolution and reduces biological and technical biases

Vallania, F.; Tam, A.; Lofgren, S.; Schaffert, S.; Azad, T. D.; Bongen, E.; Alsup, M.; Alonso, M.; Davis, M.; Engleman, E.; Khatri, P.

10.1101/206466 — bioinformatics — Posted on 2017-10-20

625 Controlled ocular radiance in a diurnal fish looking at prey

Michiels, N. K.; Seeburger, V. C.; Kalb, N.; Meadows, M. G.; Anthes, N.; Mailli, A. A.; Jack, C. B.

10.1101/206615 — animal behavior and cognition — Posted on 2017-10-20

626 Spontaneous cortical activity transiently organises into frequency specific phase-coupling networks

Vidaurre, D.; Hunt, L. T.; Quinn, A. J.; Hunt, B. A. E.; Brookes, M. J.; Nobre, A. C.; Woolrich, M. W.

10.1101/150607 — neuroscience — Posted on 2017-10-20

627 The food web of Potter Cove (Antarctica): complexity, structure and function

Marina, T. I.; Salinas, V.; Cordone, G.; Campana, G.; Moreira, M. E.; Deregibus, D.; Torre, L.; Sahade, R.; Tatian, M.; Barrera Oro, E.; De Troch, M.; Doyle, S.; Quartino, M. L.; Saravia, L.; Momo, F. R.

10.1101/094557 — ecology — Posted on 2017-10-20

628 SATORI: A System for Ontology-Guided Visual Exploration of Biomedical Data Repositories

Lekschas, F.; Gehlenborg, N.

10.1101/046755 — bioinformatics — Posted on 2017-10-20

629 Online resources for PCAWG data exploration, visualization, and discovery

Goldman, M; Zhang, J; Fonseca, N; Xiang, Q; Craft, B; Piñeiro-Yáñez, E; O'Connor, B; Bazant, W; Barrera, E; Muñoz, A; Petryszak, R; Füllgrabe, A; Al-Shahrour, F; Keays, M; Haussler, D; Weinstein, J; Huber, W; Valencia, A; Papatheodorou, I; Zhu, J; Ferreti, V; Vazquez, M

10.1101/163907 — bioinformatics — Posted on 2017-10-20

630 GABA regulates resonance and spike rate encoding via a universal mechanism that underlies the modulation of action potential generation

Kirst, C.; Ammer, J.; Felmy, F.; Herz, A.; Stemmler, M.

10.1101/206581 — neuroscience — Posted on 2017-10-20

631 An intermittent control model predicts the triphasic muscles activity during hand reaching

Leib, R.; d'Avella, A.; Nisky, I.

10.1101/206565 — neuroscience — Posted on 2017-10-20

632 Raising the stakes: Loss of efflux-pump regulation decreases meropenem susceptibility in Burkholderia pseudomallei

Sarovich, D. S.; Webb, J. R.; Pitman, M. C.; Viberg, L. T.; Mayo, M.; Baird, R. W.; Robson, J. M.; Currie, B. J.; Price, E. P.

10.1101/205070 — microbiology — Posted on 2017-10-20

633 Machine Learning for Population Genetics: A New Paradigm

Schrider, D. R.; Kern, A. D.

10.1101/206482 — evolutionary biology — Posted on 2017-10-20

634 Analysis of LRRC45 indicates cooperative functions of distal appendages at early steps of ciliogenesis

Kurtulmus, B.; Yuan, C.; Schuy, J.; Neuner, A.; Hata, S.; Kalamakis, G.; Martin-Villalba, A.; Pereira, G.

10.1101/205625 — cell biology — Posted on 2017-10-20

635 Simultaneous cell traction and growth measurements using light

Sridharan, S.; Li, Y.; Foucard, L.; Majeed, H.; Bhaduri, B.; Levine, A.; Kilian, K.; Popescu, G.

10.1101/206649 — cell biology — Posted on 2017-10-20

636 Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database

Zappia, L.; Phipson, B.; Oshlack, A.

10.1101/206573 — bioinformatics — Posted on 2017-10-20

637 Game theoretic consideration of transgenic bacteria in the human gut microbiota as a pro-biotic prophylactic for metabolic syndrome

Ibrahim, A.; Smith, J.

10.1101/206227 — bioengineering — Posted on 2017-10-20

638 Allosteric activation dictates PRC2 activity independent of its recruitment to chromatin

Lee, C.-H.; Yu, J.-R.; Kumar, S.; Jin, Y.; Kaneko, S.; Hamilton, A. D.; Reinberg, D.

10.1101/206383 — biochemistry — Posted on 2017-10-20

639 Understanding sequencing data as compositions: anoutlook and review

Quinn, T. P.; Erb, I.; Richardson, M. F.; Crowley, T. M.

10.1101/206425 — bioinformatics — Posted on 2017-10-19

640 The scent of the fly

Becher, P. G.; Lebreton, S.; Wallin, E. A.; Hedenstrom, E.; Borrero-Echeverry, F.; Bengtsson, M.; Jorger, V.; Witzgall, P.

10.1101/206375 — animal behavior and cognition — Posted on 2017-10-19

641 Mast Cells in the Developing Brain Determine Adult Sexual Behavior

Lenz, K. M.; Pickett, L. A.; Wright, C. L.; Davis, K. T.; Galan, A.; McCarthy, M. M.

10.1101/205559 — neuroscience — Posted on 2017-10-19

642 Normative Brain Size Variation and the Remodeling of Brain Shape in Humans

Reardon, P. K.; Vandekar, S. N.; Liu, S.; Patel, R.; Park, M. T. M.; Alexander-Bloch, A.; Seidlitz, J.; Clasen, L. S.; Blumenthal, J. D.; Giedd, J. N.; Gur, R. C.; Gur, R. E.; Lerch, J. P.; Chakravarty, M. M.; Satterthwaite, T. D.; Shinohara, R. T.; Raznahan, A.

10.1101/205930 — neuroscience — Posted on 2017-10-19

643 Lipid mediator class-switching downstream of PGE2 determines the outcome of inflammation resolution in vivo.

Loynes, C. A.; Lee, J. A.; Robertson, A. L.; Steel, M. J. G.; Ellett, F.; Feng, Y.; Levy, B. D.; Whyte, M. K.; Renshaw, S. A.

10.1101/205997 — immunology — Posted on 2017-10-19

644 A Unified Statistical Framework for Single Cell and Bulk RNA Sequencing Data

Zhu, L.; Lei, J.; Devlin, B.; Roeder, K.

10.1101/206532 — genetics — Posted on 2017-10-19

645 spe-43 is required for sperm activation in C. elegans

Krauchunas, A. R.; Mendez, E.; Ni, J. Z.; Druzhinina, M.; Mulia, A.; Parry, J.; Gu, S. G.; Stanfield, G. M.; Singson, A.

10.1101/206441 — developmental biology — Posted on 2017-10-19

646 Monovalent ions modulate the flux through multiple folding pathways of an RNA pseudoknot

Roca, J.; Hori, N.; Velmurugu, Y.; Narayanan, R.; Narayanan, P.; Thirumalai, D.; Ansari, A.

10.1101/205773 — biophysics — Posted on 2017-10-19

647 optSelect: using agent-based modeling and binary PSO techniques for ensemble feature selection and stability assessment

Uppal, K.; Lee, E. K.

10.1101/206185 — bioinformatics — Posted on 2017-10-19

648 A molecular network of the aging brain implicates INPPL1 and PLXNB1 in Alzheimer’s disease

Mostafavi, S.; Gaiteri, C.; Sullivan, S.; White, C.; Takasi, S.; Xu, J.; Taga, M.; Klein, H.; Patrick, E.; Komashko, V.; McCable, C.; Smith, R.; Bradshaw, E.; Root, D.; Yu, L.; Regev, A.; Chibnik, L.; Schneider, J.; Young-Pearse, T.; Bennett, D.; De Jager, P.

10.1101/205807 — systems biology — Posted on 2017-10-19

649 Topographical and spectral signatures of infant and adult movement artifacts in naturalistic EEG

Georgieva, S.; Lester, S.; Yilmaz, M.; Wass, S.; Leong, V.

10.1101/206029 — neuroscience — Posted on 2017-10-19

650 Temporal metacognition as the decoding of self-generated brain dynamics

Kononowicz, T. W.; Roger, C.; van Wassenhove, V.

10.1101/206086 — neuroscience — Posted on 2017-10-19

651 The effect of stimulation interval on plasticity following repeated blocks of intermittent theta burst stimulation

Tse, N. Y.; Goldsworthy, M. R.; Ridding, M. C.; Coxon, J. P.; Fitzgerald, P. B.; Fornito, A.; Rogasch, N.

10.1101/205781 — neuroscience — Posted on 2017-10-19

652 Do adolescents take more risks? Not when facing a novel uncertain situation

Elteto, N.; Janacsek, K.; Kobor, A.; Takacs, A.; Toth-Faber, E.; Nemeth, D.

10.1101/206128 — neuroscience — Posted on 2017-10-19

653 Memory consolidation is linked to spindle-mediated information processing during sleep

Cairney, S. A.; Guttesen, A.; El Marj, N.; Staresina, B. P.

10.1101/206151 — neuroscience — Posted on 2017-10-19

654 The relationship between reinforcement and explicit strategies during visuomotor adaptation

Codol, O.; Holland, P. J.; Galea, J. M.

10.1101/206284 — neuroscience — Posted on 2017-10-19

655 Enhanced Astrocyte Responses are Driven by a Genetic Risk Allele Associated with Multiple Sclerosis

Ponath, G.; Lincoln, M. R.; Dahlawi, S.; Mubarak, M.; Sumida, T.; Arias, L.; Zhang, S.; Isitan, C.; Nguyen, T. D.; Raine, C. S.; Hafler, D. A.; Pitt, D.

10.1101/206110 — neuroscience — Posted on 2017-10-19

656 Confronting the elephant in the room - verbal paired associates and the hippocampus

Clark, I. A.; Kim, M.; Maguire, E. A.

10.1101/206250 — neuroscience — Posted on 2017-10-19

657 Mapping the human brain’s cortical-subcortical functional network organization

Spronk, M.; Ji, J. L.; Kulkarni, K.; Repovs, G.; Anticevic, A.; Cole, M. W.

10.1101/206292 — neuroscience — Posted on 2017-10-19

658 Neural decoding of bistable sounds reveals an effect of intention on perceptual organization

Billig, A. J.; Davis, M. H.; Carlyon, R. P.

10.1101/206417 — neuroscience — Posted on 2017-10-19

659 Taxon disappearance from microbiome analysis indicates need for mock communities as a standard in every sequencing run

Yeh, Y.-C.; Needham, D.; Sieradzki, E.; Fuhrman, J.

10.1101/206219 — microbiology — Posted on 2017-10-19

660 Demographic fluctuation of community-acquired antibiotic-resistant Staphylococcus aureus lineages: potential role of flimsy antibiotic exposure

Gustave, C.-A.; Tristan, A.; Martins-Simoes, P.; Stegger, M.; Benito, Y.; Andersen, P. S.; Bes, M.; Glaser, P.; Laurent, F.; Wirth, T.; Vandenesch, F.

10.1101/206078 — microbiology — Posted on 2017-10-19

661 Adapterama III: Quadruple-indexed, triple-enzyme RADseq libraries for about $1USD per Sample (3RAD)

Glenn, T. C.; Bayona-Vasquez, N. J.; Kieran, T. J.; Pierson, T. W.; Hoffberg, S. L.; Scott, P. A.; Bentley, K. E.; Finger, J. W.; Watson, P. R.; Louha, S.; Troendle, N.; Diaz-Jaimes, P.; Mauricio, R.; Faircloth, B. C.

10.1101/205799 — genomics — Posted on 2017-10-19

662 No major flaws in "Identification of individuals by trait prediction using whole-genome sequencing data"

Lippert, C.; Sabatini, R.; Maher, M. C.; Kang, E. Y.; Lee, S.; Arikan, O.; Harley, A.; Bernal, A.; Garst, P.; Lavrenko, V.; Yocum, K.; Wong, T. M.; Zhu, M.; Yang, W.-Y.; Chang, C.; Hicks, B.; Ramakrishnan, S.; Tang, H.; Xie, C.; Brewerton, S.; Turpaz, Y.; Telenti, A.; Roby, R. K.; Och, F.; Venter, J. C.

10.1101/187542 — genomics — Posted on 2017-10-19

663 Predicting the genetic loci of past evolution

Courtier-Orgogozo, V.; Martin, A.

10.1101/205153 — genetics — Posted on 2017-10-19

664 Roosting in exposed microsites by a nocturnal bird, the rufous-cheeked nightjar: implications for water balance under current and future climate conditions

O'Connor, R. S.; Brigham, M.; McKechnie, A.

10.1101/206300 — biophysics — Posted on 2017-10-19

665 SEACOIN2.0: an interactive mining and visualization tool for information retrieval, summarization, and knowledge discovery

Uppal, K.; Lee, E. K.

10.1101/206193 — bioinformatics — Posted on 2017-10-19

666 RNA velocity in single cells

La Manno, G.; Soldatov, R.; Hochgerner, H.; Zeisel, A.; Petukhov, V.; Kastriti, M.; Lonnerberg, P.; Furlan, A.; Fan, J.; Liu, Z.; van Bruggen, D.; Guo, J.; Sundstrom, E.; Castelo-Branco, G.; Adameyko, I.; Linnarsson, S.; Kharchenko, P.

10.1101/206052 — genomics — Posted on 2017-10-19

667 Association of Polygenic Risk Scores for Multiple Cancers in a Phenome-wide Study: Results from The Michigan Genomics Initiative

Fritsche, L. G.; Gruber, S. B.; Wu, Z.; Schmidt, E. M.; Zawistowski, M.; Moser, S. E.; Blanc, V. M.; Brummett, C. M.; Kheterpal, S.; Abecasis, G. R.; Mukherjee, B.

10.1101/205021 — genetics — Posted on 2017-10-19

668 Multimodal cell tracking from systemic administration to tumour growth by combining gold nanorods and reporter genes

Comenge, J.; Sharkey, J.; Fragueiro, O.; Wilm, B.; Brust, M.; Murray, P.; Levy, R.; Plagge, A.

10.1101/199836 — cell biology — Posted on 2017-10-19

669 Increasing the time resolution of single-molecule experiments with Bayesian inference

Kinz-Thompson, C. D.; Gonzalez, R. L.

10.1101/099648 — biophysics — Posted on 2017-10-19

670 Two distinct DNA sequences recognized by transcription factors represent enthalpy and entropy optima

Morgunova, E.; Yin, Y.; Jolma, A.; Popov, A.; Xu, Y.; Nilsson, L.; Taipale, J.

10.1101/205906 — biochemistry — Posted on 2017-10-19

671 Transcranial alternating current stimulation induces long-term augmentation of neural connectivity and sustained anxiety reduction

Clancy, K. J.; Baisley, S. K.; Albizu, A.; Kartvelishvili, N.; Ding, M.; Li, W.

10.1101/204222 — neuroscience — Posted on 2017-10-19

672 The response to selection in Glycoside Hydrolase Family 13 structures: A comparative quantitative genetics approach

Hleap, J. S.; Blouin, C.

10.1101/205542 — bioinformatics — Posted on 2017-10-19

673 A CRISPR-Cas9 Genome Engineering Platform in Primary CD4+ T Cells for the Interrogation of HIV Host Factors

Hultquist, J. F.; Hiatt, J.; Schumann, K.; McGregor, M. J.; Roth, T. L.; Haas, P.; Doudna, J.; Marson, A.; Krogan, N. J.

10.1101/205500 — systems biology — Posted on 2017-10-19

674 Barriers to Integration of Bioinformatics into Undergraduate Life Sciences Education

Williams, J.; Drew, J.; Galindo-Gonzalez, S.; Robic, S.; Dinsdale, E.; Morgan, W.; Triplett, E.; Burnette, J.; Donovan, S.; Elgin, S.; Fowlks, E.; Goodman, A.; Grandgenett, N.; Goller, C.; Hauser, C.; Jungck, J. R.; Newman, J.; Pearson, W.; Ryder, E.; Wilson Sayres, M.; Sierk, M.; Smith, T.; Tosado-Acevedo, R.; Tapprich, W.; Tobin, T.; Toro-Martinez, A.; Welch, L.; Wright, R.; Ebenbach, D.; McWilliams, M.; Rosenwald, A.; Pauley, M.

10.1101/204420 — scientific communication and education — Posted on 2017-10-19

675 The plant calcium-dependent protein kinase CPK3 phosphorylates REM1.3 to restrict viral infection

Perraki, A.; Gronnier, J.; Gouguet, P.; Boudsocq, M.; Deroubaix, A.-F.; Simon, V.; German-Retana, S.; Zipfel, C.; Bayer, E.; Mongrand, S.; Germain, V.

10.1101/205765 — plant biology — Posted on 2017-10-19

676 COPD lungs show an attached stratified mucus layer resembling the protective colonic mucus

Fernandez-Blanco, J.; Arike, L.; Ermund, A.; Fakih, D.; Rodriguez, A.; Abad, B.; Skansebo, E.; Jackson, S.; Root, J.; Singh, D.; McCrae, C.; Evans, C.; Astrand, A.; Hansson, G. C.

10.1101/205948 — physiology — Posted on 2017-10-19

677 Complete assembly of a dengue virus type 3 genome from a recent genotype III clade by metagenomic sequencing of serum

Pattabiraman, C.; Dias, M.; Siddappa, S.; Gowda, M.; Shet, A.; Smith, D.; Muehlemann, B.; Tamma, K.; Solomon, T.; Jones, T.; Krishna, S.

10.1101/204503 — microbiology — Posted on 2017-10-19

678 Genetic analysis of de novo variants reveals sex differences in complex and isolated congenital diaphragmatic hernia and indicates MYRF as a candidate gene

Qi, H.; Yu, L.; Zhou, X.; Kitaygorodsky, A.; Wynn, J.; Zhu, N.; Aspelund, G.; Lim, F. Y.; Crombleholme, T.; Cusick, R.; Azarow, K.; Danko, M. E.; Chung, D.; Warner, B. W.; Mychaliska, G. B.; Potoka, D.; Wagner, A. J.; ElFiky, M.; Wilson, J. M.; High, F. A.; Longoni, M.; Donahoe, P.; Chung, W. K.; Shen, Y.

10.1101/206037 — genomics — Posted on 2017-10-19

679 Evidence of non-tandemly repeated rDNAs and their intragenomic heterogeneity in Rhizophagus irregularis

Maeda, T.; Kobayashi, Y.; Kameoka, H.; Okuma, N.; Takeda, N.; Yamaguchi, K.; Bino, T.; Shigenobu, S.; Kawaguchi, M.

10.1101/205864 — genomics — Posted on 2017-10-19

680 Locus-Specific Enhancer Hubs And Architectural Loop Collisions Uncovered From Single Allele DNA Topologies

10.1101/206094 — genetics — Posted on 2017-10-19

681 Electrostatic Tuning of a Potassium Channel in Electric Fish

Swapna, I.; Ghezzi, A.; Markham, M. R.; Halling, D. B.; Lu, Y.; Gallant, J.; Zakon, H.

10.1101/206243 — evolutionary biology — Posted on 2017-10-19

682 Emergent Simplicity in Microbial Community Assembly

Goldford, J. E.; Lu, N.; Bajic, D.; Estrela, S.; Tikhonov, M.; Sanchez-Gorostiaga, A.; Segre, D.; Mehta, P.; Sanchez, A.

10.1101/205831 — ecology — Posted on 2017-10-19

683 Cryo-EM Reveals the Structural Basis of Microtubule Depolymerization by Kinesin-13s

Benoit, M. P. M. H.; Asenjo, A. B.; Sosa, H.

10.1101/206268 — cell biology — Posted on 2017-10-19

684 Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain by scGESTALT

Raj, B.; Wagner, D. E.; McKenna, A.; Pandey, S.; Klein, A. M.; Shendure, J.; Gagnon, J. A.; Schier, A. F.

10.1101/205534 — developmental biology — Posted on 2017-10-19

685 HuD is a neural enhancer of global translation acting on mTORC1-responsive genes and sponged by the Y3 small non-coding RNA

Zuccotti, P.; Tebaldi, T.; Peroni, D.; Köhn, M.; Gasperini, L.; Potrich, V.; Dudnakova, T.; Sanguinetti, G.; Conti, L.; Macchi, P.; Tollervey, D.; Hüttelmaier, S.; Quattrone, A.

10.1101/205658 — cell biology — Posted on 2017-10-19

686 Inflammatory Cellular Response To Mechanical Ventilation In Elastase-Induced Experimental Emphysema: Role Of Pre-Existing Alveolar Macrophages Infiltration

Rouze, A.; Voiriot, G.; Guivarch, E.; Roux, F.; Tran Van Nhieu, J.; Isabey, D.; Brochard, L.; Maitre, B.; Dessap, A.; Boczkowski, J.

10.1101/205989 — cell biology — Posted on 2017-10-19

687 Multiple interactions between Scc1 and Scc2 activate cohesin’s DNA dependent ATPase and replace Pds5 during loading

Petela, N.; Gligoris, T. G.; Metson, J. S.; Lee, B.-G.; Voulgaris, M.; Hu, B.; Kikuchi, S.; Chapard, C.; Chen, W.; Rajendra, E.; Srinivisan, M.; Yu, H.; Löwe, J.; Nasmyth, K.

10.1101/205914 — cell biology — Posted on 2017-10-19

688 Human pluripotent reprogramming with CRISPR activators

Weltner, J.; Balboa, D.; Katayama, S.; Bespalov, M. M.; Krjutskov, K.; Jouhilahti, E.-M.; Trokovic, R.; Kere, J.; Otonkoski, T.

10.1101/206144 — cell biology — Posted on 2017-10-19

689 Mitochondrial pseudogenes suggest repeated inter-species hybridization in hominid evolution.

Popadin, K.; Gunbin, K.; Peshkin, L.; Annis, S.; Fleischmann, Z.; Kraytsberg, G.; Markuzon, N.; Ackermann, R. R.; Khrapko, K.

10.1101/134502 — evolutionary biology — Posted on 2017-10-19

690 Influenza Interaction with Cocirculating Pathogens, and Its Impact on Surveillance, Pathogenesis and Epidemic Profile: A Key Role for Mathematical Modeling

Opatowski, L.; Baguelin, M.; Eggo, R.

10.1101/203265 — epidemiology — Posted on 2017-10-19

691 Diabetes mellitus is associated with increased prevalence of latent tuberculosis infection: Results from the National Health and Nutrition Examination Survey

Barron, M. M.; Shaw, K. M.; Bullard, K. M.; Ali, M. K.; Magee, M. J.

10.1101/204461 — epidemiology — Posted on 2017-10-19

692 Long-Term Leisure-Time Physical Activity and Other Health Habits as Predictors of Objectively Monitored Late-Life Physical Activity: A 40-Year Twin Study

Waller, K.; Vaha-Ypya, H.; Tormakangas, T.; Hautasaari, P.; Lindgren, N.; Iso-Markku, P.; Heikkila, K.; Rinne, J.; Kaprio, J.; Sievanen, H.; Kujala, U. M.

10.1101/205856 — epidemiology — Posted on 2017-10-19

693 L(3)mbt and the LINT complex safeguard tissue identity in the Drosophila ovary

Coux, R.-X.; Karam Teixeira, F.; Lehmann, R.

10.1101/178194 — developmental biology — Posted on 2017-10-19

694 Neurobehavioural Correlates of Obesity are Largely Heritable

Vainik, U.; Baker, T. B.; Alanis, J. C. G.; Dadar, M.; Michaud, A.; Misic, B.; Zeighami, Y.; Zhang, Y.; Collins, D. L.; Dagher, A.

10.1101/204917 — neuroscience — Posted on 2017-10-19

695 Use of a Neural Circuit Probe to Validate in silico Predictions of Inhibitory Connections

Liu, H.; Bridges, D.; Randall, C.; Solla, S. A.; Wu, B.; Hansma, P.; Yan, X.; Kosik, K. S.; Bouchard, K.

10.1101/204594 — neuroscience — Posted on 2017-10-19

696 Cluster Headache: Comparing Clustering Tools for 10X Single Cell Sequencing Data

Freytag, S.; Lonnstedt, I.; Ng, M.; Bahlo, M.

10.1101/203752 — bioinformatics — Posted on 2017-10-19

697 A machine learning approach to predicting short-term mortality risk in patients starting chemotherapy

Elfiky, A.; Pany, M.; Parikh, R.; Obermeyer, Z.

10.1101/204081 — bioinformatics — Posted on 2017-10-19

698 MatchMiner: An open source computational platform for real-time matching of cancer patients to precision medicine clinical trials using genomic and clinical criteria

10.1101/199489 — bioinformatics — Posted on 2017-10-19

699 Risk factor analysis of equine strongyle resistance to anthelmintics

Salle, G.; Cortet, J.; Bois, I.; Dubes, C.; Guyot-Sionest, Q.; Larrieu, C.; Landrin, V.; Majorel, G.; Wittreck, S.; Woringer, E.; Couroucé, A.; Guillot, J.; Jacquiet, P.; Guegnard, F.; Blanchard, A.; Leblond, A.

10.1101/158105 — zoology — Posted on 2017-10-19

700 Enhanced intestinal reabsorption due to reduced metabolism of ceftriaxone

Sar, T. K.; Samanta, I.; Hansda, R. N.; Buragohain, R.; Mandal, T. K.

10.1101/205880 — pharmacology and toxicology — Posted on 2017-10-19

701 The representation of colored objects in macaque color patches

Chang, L.; Bao, P.; Tsao, D.

10.1101/205104 — neuroscience — Posted on 2017-10-19

702 Transcranial real-time in vivo recording of electrophysiological neural activity in the rodent brain with near-infrared photoacoustic voltage-sensitive dye imaging

Kang, J.; Zhang, H. K.; Kadam, S. D.; Julie, F.; Valentine, H.; Kang, J. U.; Rahmim, A.; Gjedde, A.; Loew, L. M.; Wong, D. F.; Boctor, E. M.

10.1101/202408 — neuroscience — Posted on 2017-10-19

703 Mathematical modelling of cortical neurogenesis reveals that the founder population does not necessarily scale with neuronal output

Picco, N.; Garcia-Moreno, F.; Woolley, T.; Maini, P.; Molnar, Z.

10.1101/206045 — neuroscience — Posted on 2017-10-19

704 Signposts in the fog: Objects facilitate scene representations in left scene-selective cortex

Brandman, T.; Peelen, M. V.

10.1101/206003 — neuroscience — Posted on 2017-10-19

705 Signatures of Selection in the Human Antibody Repertoire: Selective Sweeps, Competing Subclones, and Neutral Drift

Horns, F.; Vollmers, C.; Dekker, C. L.; Quake, S. R.

10.1101/145052 — immunology — Posted on 2017-10-19

706 Experimental infection of cattle with Mycobacterium tuberculosis isolates shows the attenuation of the human tubercle bacillus for cattle

Villarreal-Ramos, B.; Berg, S.; Whelan, A.; Holbert, S.; Carreras, F.; Salguero, F. J.; Khatri, B.; Malone, K. M.; Rue-Albrecht, K.; Shaughnessy, R.; Smyth, A. M.; Ameni, G.; Aseffa, A.; Sarradin, P.; Winter, N.; Vordermeier, M.; Gordon, S. V.

10.1101/202663 — immunology — Posted on 2017-10-19

707 Data quality of Whole Genome Bisulfite Sequencing on Illumina platforms

Raine, A.; Liljedahl, U.; Nordlund, J.

10.1101/188797 — genomics — Posted on 2017-10-19

708 Comparative analysis examining patterns of genomic differentiation across multiple episodes of population divergence in birds

Delmore, K.; Lugo, J.; Van Doren, B. M.; Lundberg, M.; Bensch, S.; Irwin, D. E.; Liedvogel, M.

10.1101/202168 — genomics — Posted on 2017-10-19

709 Jak-Stat pathway induces Drosophila follicle elongation by a gradient of apical contractility

Alegot, H.; Pouchin, P.; Bardot, O.; Mirouse, V.

10.1101/205187 — developmental biology — Posted on 2017-10-19

710 Two spatially distinct Kinesin-14 Pkl1 and Klp2 generate collaborative inward forces against Kinesin-5 Cut7 in S. pombe

Yukawa, M.; Yamada, Y.; Yamauchi, T.; Toda, T.

10.1101/205815 — cell biology — Posted on 2017-10-19

711 Gpufit: An open-source toolkit for GPU-accelerated curve fitting

Przybylski, A.; Thiel, B.; Keller-Findeisen, J.; Stock, B.; Bates, M.

10.1101/174110 — biophysics — Posted on 2017-10-19

712 Lipid-protein interplay in dimerization of the juxtamembrane domains of epidermal growth factor receptor

Maeda, R.; Sato, T.; Okamoto, K.; Yanagawa, M.; Sako, Y.

10.1101/197673 — biophysics — Posted on 2017-10-19

713 Juicebox.js provides a cloud-based visualization system for Hi-C data

Robinson, J.; Turner, D.; Durand, N. C.; Thorvaldsdottir, H.; Mesirov, J. P.; Aiden, E. L.

10.1101/205740 — bioinformatics — Posted on 2017-10-19

714 The response to selection in Glycoside Hydrolase Family 13 structures: A comparative quantitative genetics approach

Hleap, J. S.; Blouin, C.

10.1101/205542 — bioinformatics — Posted on 2017-10-19

715 Modeling Codon Rate Variation: Robust Inference of Protein and Nucleotide Selection

Davydov, I. I.; Salamin, N.; Robinson-Rechavi, M.

10.1101/174839 — bioinformatics — Posted on 2017-10-19

716 Fibril branching dominates self-assembly of mutant huntingtin exon-1 aggregates in vitro

Wagner, A. S.; Politi, A. Z.; Steinhof, A.; Bravo-Rodriguez, K.; Buntru, A.; Strempel, N. U.; Brusendorf, L.; Haenig, C.; Boeddrich, A.; Plassmann, S.; Ramirez-Anguita, J. M.; Baum, K.; Sanchez-Garcia, E.; Wolf, J.; Wanker, E. E.

10.1101/195297 — biochemistry — Posted on 2017-10-19

717 Massively parallel single cell lineage tracing using CRISPR/Cas9 induced genetic scars

Spanjaard, B.; Hu, B.; Mitic, N.; Junker, J. P.

10.1101/205971 — systems biology — Posted on 2017-10-19

718 KKL-35 Exhibits Potent Antibiotic Activity Against Legionella Species Independently Of Trans-Translation Inhibition

Brunel, R.; Descours, G.; Durieux, I.; Doublet, P.; Jarraud, S.; Charpentier, X.

10.1101/135798 — microbiology — Posted on 2017-10-19

719 Distinct Epigenomic Patterns Are Associated with Haploinsufficiency and Predict Risk Genes of Developmental Disorders

Han, X.; Chen, S.; Flynn, E. D.; Wintner, D.; Shen, Y.

10.1101/205849 — genetics — Posted on 2017-10-19

720 Estimating barriers to gene flow from distorted isolation by distance patterns

Ringbauer, H.; Kolesnikov, A.; Field, D.; Barton, N. H.

10.1101/205484 — genetics — Posted on 2017-10-19

721 Linkage mapping of yeast cross protection connects gene expression variation to a higher-order organismal trait

Stuecker, T. N.; Scholes, A. N.; Lewis, J. A.

10.1101/152793 — genetics — Posted on 2017-10-19

722 Myosin IIA interacts with the spectrin-actin membrane skeleton to control red blood cell membrane curvature and deformability

Smith, A. S.; Nowak, R. B.; Zhou, S.; Gianetto, M.; Gokhin, D. S.; Papoin, J.; Ghiran, I. C.; Blanc, L.; Wan, J.; Fowler, V. M.

10.1101/202556 — cell biology — Posted on 2017-10-19

723 Giantin knockout models reveal a feedback loop between Golgi function and glycosyltransferase expression.

Stevenson, N.; Bergen, D.; Skinner, R.; Kague, E.; Martin-Silverstone, E.; Robson Brown, K.; Hammond, C.; Stephens, D.

10.1101/123547 — cell biology — Posted on 2017-10-19

724 DNA unwinding is the primary determinant of CRISPR-Cas9 activity

Gong, S.; Yu, H. H.; Johnson, K. A.; Taylor, D. W.

10.1101/205823 — biochemistry — Posted on 2017-10-19

725 Online resources for PCAWG data exploration, visualization, and discovery

10.1101/163907 — bioinformatics — Posted on 2017-10-18

726 A unified computational framework for modeling genome-wide nucleosome landscape

Jin, H.; Finnegan, A. I.; Song, J. S.

10.1101/202580 — bioinformatics — Posted on 2017-10-18

727 Accurate, Sensitive, and Precise Multiplexed Proteomics using the Complement Reporter Ion Cluster

Sonnett, M.; Yeung, E.; Wuhr, M.

10.1101/205054 — systems biology — Posted on 2017-10-18

728 Rapid Agrobacterium-mediated transformation of tobacco cotyledons using toothpicks

Yau, Y.-Y.; Easterling, M.; Brennan, L.

10.1101/204891 — plant biology — Posted on 2017-10-18

729 Mid-Infrared Spectroscopy Study of Effects of Neonicotinoids on Forager Honey Bee (Apis mellifera) Fat Bodies and Their Connection to Colony Collapse Disorder

Feng, Y.; Luthra, A.; Ding, K.; Yang, Y.; Savage, J.; Wei, X.; Moeschter, R.; Ahuja, S.; Villegas, V.; Torbina, B.; Ahooja, A.; Ellis, T.; Boechler, A.-M.; Roberts, A.

10.1101/205112 — pharmacology and toxicology — Posted on 2017-10-18

730 Physiological and pathological brain activation in the anesthetized rat produces hemodynamic-dependent cortical temperature increases that can confound the BOLD fMRI signal.

Harris, S. S.; Boorman, L. W.; Das, D.; Kennerley, A. J.; Sharp, P. S.; Martin, C.; Redgrave, P.; Schwartz, T. H.; Berwick, J.

10.1101/205609 — neuroscience — Posted on 2017-10-18

731 DNA-stabilized silver nanoclusters as specific, ratiometric fluorescent dopamine sensors

Del Bonis-O'Donnell, J. T.; Thakrar, A.; Wain Hirschberg, J.; Vong, D.; Queenan, B. N.; Fygenson, D.; Pennathur, S.

10.1101/205591 — neuroscience — Posted on 2017-10-18

732 Oscillatory multiplexing indexes precision

Grabot, L.; Kononowicz, T. W.; Dupre la Tour, T.; Gramfort, A.; Doyere, V.; van Wassenhove, V.

10.1101/205245 — neuroscience — Posted on 2017-10-18

733 Changes in corticospinal excitability associated with motor learning by observing

McGregor, H. R.; Vesia, M.; Rinchon, C.; Chen, R.; Gribble, P.

10.1101/205385 — neuroscience — Posted on 2017-10-18

734 Maternal SSRI treatment during offspring development results in long-term behavioral, cellular, and neuroimaging disruptions

Maloney, S. E.; Rahn, R.; Akula, S.; Rieger, M. A.; McCullough, K. B.; Jakes, C.; Avdagic, S.; Chandler, K.; Bauernfeind, A. L.; Culver, J. P.; Dougherty, J. D.

10.1101/205708 — neuroscience — Posted on 2017-10-18

735 Multi-band component analysis for EEG artifact removal and source reconstruction with application to gamma-band activity

Jonmohamadi, Y.; Muthukumaraswamy, S. D.

10.1101/205120 — neuroscience — Posted on 2017-10-18

736 Trait impulsivity and response-inhibition in Parkinson Disease. An fMRI study.

Palermo, S.; Morese, R.; Stanziano, M.; Zibetti, M.; Romagnolo, A.; Sirgiovanni, S.; De Faveri, L.; Valentini, M. C.; Lopiano, L.

10.1101/204768 — neuroscience — Posted on 2017-10-18

737 Polygenic risk score for schizophrenia is not strongly associated with the expression of specific genes or gene sets

Curtis, D.

10.1101/205518 — genetics — Posted on 2017-10-18

738 Periodic variation of mutation rates in bacterial genomes associated with replication timing

Dillon, M. M.; Sung, W.; Lynch, M.; Cooper, V. S.

10.1101/195818 — genetics — Posted on 2017-10-18

739 ZmCOL3, a CCT-domain containing gene affects maize adaptation as a repressor and upstream of ZmCCT

Jin, M.; Liu, X.; Jia, W.; Liu, H.; Li, W.; Peng, Y.; Du, Y.; Wang, Y.; Yin, Y.; Zhang, X.; Liu, Q.; Deng, M.; Li, N.; Cui, X.; Hao, D.; Yan, J.

10.1101/205237 — genetics — Posted on 2017-10-18

740 Widespread southern forests during the Last Glacial Maximum, not refugia, explain genetic structure of two eastern North American hickory species

Bemmels, J. B.; Dick, C. W.

10.1101/205716 — evolutionary biology — Posted on 2017-10-18

741 Camelot -- Intuitive Software for Camera Trap Data Management

Hendry, H.; Mann, C.

10.1101/203216 — ecology — Posted on 2017-10-18

742 Designing oil palm landscapes to retain biodiversity using insights from a key ecological indicator group

Gray, C.; Slade, E.; Mann, D.; Lewis, O.

10.1101/204347 — ecology — Posted on 2017-10-18

743 Cooperative recruitment of Yan to paired high affinity ETS sites organizes repression to confer specificity and robustness to cardiac cell fate specification

Boisclair Lachance, J.-F.; Webber, J. L.; Rebay, I.

10.1101/205724 — developmental biology — Posted on 2017-10-18

744 T Cell Calcium Dynamics Visualized in a Ratiometric tdTomato-GCaMP6f Transgenic Reporter Mouse

Dong, T. X.; Othy, S.; Jairaman, A.; Skupsky, J.; Zavala, A.; Parker, I.; Dynes, J. L.; Cahalan, M. D.

10.1101/203950 — cell biology — Posted on 2017-10-18

745 The small molecule KHS101 induces bioenergetic dysfunction in glioblastoma cells through inhibition of mitochondrial HSPD1

Polson, E. S.; Kuchler, V. B.; Abbosh, C.; Ross, E. M.; Mathew, R. K.; Beard, H. A.; Chuntharpursat-Bon, E.; Williams, J.; Da Silva, B.; Shao, H.; Patel, A.; Davies, A. J.; Droop, A.; Griffiths, H. B. S.; Chumas, P.; Short, S. C.; Lorger, M.; Gestwicki, J.; Roberts, L. D.; Bon, R. S.; Allison, S. J.; Zhu, S.; Markowetz, F.; Wurdak, H.

10.1101/205203 — cancer biology — Posted on 2017-10-18

746 Regulation of thickness of actomyosin cortex in well-spread cells by contractility and spread area

Kumar, R.; Sinha, B.

10.1101/205138 — biophysics — Posted on 2017-10-18

747 Analytic combinatorics for bioinformatics I: seeding methods

Filion, G. J.

10.1101/205427 — bioinformatics — Posted on 2017-10-18

748 Minimization of muscle activation costs demanded from mechanical work and power accounts for selection of duty factor in human gaits.

Sobota, G.; Usherwood, J. R.

10.1101/205526 — bioengineering — Posted on 2017-10-18

749 Early urinary candidate biomarkers in a rat model of experimental autoimmune encephalomyelitis

Zhao, M.; Wu, J.; Li, X.; Gao, Y.

10.1101/205294 — biochemistry — Posted on 2017-10-18

750 A Longitudinal Model for Functional Connectivity Networks Using Resting-State fMRI

Hart, B.; Cribben, I.; Fiecas, M.

10.1101/152538 — neuroscience — Posted on 2017-10-18

751 Mef2 induction of the immediate early gene Hr38/Nr4a is terminated by Sirt1 to promote ethanol tolerance

Adhikari, P.; Orozco, D.; Wolf, F. W.

10.1101/205666 — neuroscience — Posted on 2017-10-18

752 Bipolar oscillations between positive and negative mood states in a computational model of Basal Ganglia

Balasubramani, P. P.; Chakravarthy, S.

10.1101/205310 — neuroscience — Posted on 2017-10-18

753 Default Mode Network patterns and its interactions with memory performance in patients with Temporal Lobe Epilepsy and controls

Zanao, T. A.; Lopes, T.; Campos, B.; Nogueira, M. H.; Yasuda, C. L.; Cendes, F.

10.1101/205476 — neuroscience — Posted on 2017-10-18

754 An Oxidative Pathway of Deoxyribose Catabolism

Ray, J.; Price, M. N.; Iavarone, A. T.; Carlson, H. K.; Ryan, E. M.; Malmstrom, R. R.; Arkin, A. P.; Deutschbauer, A. M.

10.1101/205583 — microbiology — Posted on 2017-10-18

755 Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severity

Last, A. R.; Pickering, H.; Roberts, C.; Coll, F.; Phelan, J.; Burr, S. E.; Cassama, E.; Nabicassa, M.; Seth-Smith, H. M. B.; Hadfield, J.; Cutliffe, L. T.; Clarke, I. N.; Mabey, D. C. W.; Bailey, R. L.; Clark, T. G.; Thomson, N. R.; Holland, M. J.

10.1101/205336 — genomics — Posted on 2017-10-18

756 Genomic Locus Modulating IOP in the BXD RI Mouse Strains

King, R. A.; Li, Y.; Wang, J.; Struebing, F.; Geisert, E.

10.1101/202937 — genetics — Posted on 2017-10-18

757 Stoichiometric balance of protein copy numbers is measurable and functionally significant in a protein-protein interaction network for yeast endocytosis

Holland, D. O.; Johnson, M. E.

10.1101/205674 — biophysics — Posted on 2017-10-18

758 Quinary structure kinetically controls protein function and dysfunction

Khan, T.; Kandola, T.; Wu, J.; Ketter, E.; Venkatesan, S.; Lange, J. J.; Rodriguez Gama, A.; Box, A.; Unruh, J. R.; Cook, M.; Halfmann, R.

10.1101/205690 — biophysics — Posted on 2017-10-18

759 Real-time observation of DNA target interrogation and product release by the RNA-guided endonuclease CRISPR Cpf1

Singh, D.; Mallon, J.; Poddar, A.; Wang, Y.; Tipanna, R.; Yang, O.; Bailey, S.; Ha, T.

10.1101/205575 — biophysics — Posted on 2017-10-18

760 zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

Parekh, S.; Ziegenhain, C.; Vieth, B.; Enard, W.; Hellmann, I.

10.1101/153940 — bioinformatics — Posted on 2017-10-18

761 The uncertainty of old aliquots of cell lines: e-CAS or m-CAS?

Evans, E.; Paillot, R.; Lopez-Alvarez, M. R.

10.1101/204149 — immunology — Posted on 2017-10-18

762 A fast immune priming that confers a complete infection resistance on silkworm (Bombyx mori)

Miyashita, A.

10.1101/205369 — immunology — Posted on 2017-10-18

763 Histone Deacetylase 7 Mediates Tissue-Specific Autoimmunity via Control of Innate Effector Function in Invariant Natural Killer T-Cells

Kasler, H. G.; Lee, I. S.; Lim, H. W.; Verdin, E.

10.1101/205377 — immunology — Posted on 2017-10-18

764 Transcriptome dynamics at the Arabidopsis graft junction reveal an inter-tissue recognition mechanism that activates vascular regeneration

Melnyk, C. W.; Gabel, A.; Hardcastle, T. J.; Robinson, S.; Miyashima, S.; Grosse, I.; Meyerowitz, E. M.

10.1101/198598 — plant biology — Posted on 2017-10-18

765 Variable impact of Verticillium longisporum on oilseed rape yield in field trials in the United Kingdom

Depotter, J.; Thomma, B.; Wood, T.

10.1101/205401 — plant biology — Posted on 2017-10-18

766 Case report: intermittent fasting and probiotic yogurt consumption are associated with reduction of serum alpha-N-acetylgalactosaminidase and increased urinary excretion of lipophilic toxicants

Blythe, J.; Ruggiero, M.; Pacini, S.

10.1101/177774 — pharmacology and toxicology — Posted on 2017-10-18

767 How we learn things we don’t know already: A theory of learning structured representations from experience

Doumas, L. A. A.; Puebla, G.; Martin, A. E.

10.1101/198804 — neuroscience — Posted on 2017-10-18

768 Gender- and gamete-specific patterns of X chromosome segregation in a three-gendered nematode

Tandonnet, S.; Farrell, M. C.; Koutsovoulos, G.; Blaxter, M.; Parihar, M.; Sadler, P. L.; Shakes, D.; Pires da Silva, A.

10.1101/205211 — genetics — Posted on 2017-10-18

769 Target immunity levels for achieving and maintaining measles elimination

Funk, S.; Knapp, J. K.; Lebo, E.; Reef, S. E.; Dabbagh, A. J.; Kretsinger, K.; Jit, M.; Edmunds, W. J.; Strebel, P. M.

10.1101/201574 — epidemiology — Posted on 2017-10-18

770 Spearfishing promotes a timidity syndrome and increases the safe operating distances in fish

Sbragaglia, V.; Morroni, L.; Bramanti, L.; Weitzmann, B.; Arlinghaus, R.; Azzurro, E.

10.1101/205344 — ecology — Posted on 2017-10-18

771 A dynamic mechanism for allosteric activation of Aurora kinase A by activation loop phosphorylation

Ruff, E. F.; Muretta, J. M.; Thompson, A.; Lake, E. W.; Cyphers, S.; Albanese, S. K.; Hanson, S. M.; Behr, J. M.; Thomas, D. D.; Chodera, J. D.; Levinson, N. M.

10.1101/205260 — biophysics — Posted on 2017-10-18

772 Reconstruction of atomistic structures from coarse-grained models for protein-DNA complexes

Shimizu, M.; Takada, S.

10.1101/205062 — biophysics — Posted on 2017-10-18

773 Evolutionary variance analysis of the Glycoside Hydrolase Family 13: Structural evidence in classification and evolution

Hleap, J. S.; Blouin, C.

10.1101/201251 — bioinformatics — Posted on 2017-10-18

774 Connectome-harmonic decomposition of human brain activity reveals dynamical repertoire re-organisation under LSD

Atasoy, S.; Roseman, L.; Kaelen, M.; Kringelbach, M. L.; Deco, G.; Carhart-Harris, R. L.

10.1101/163667 — neuroscience — Posted on 2017-10-18

775 mcSCRB-seq: sensitive and powerful single-cell RNA sequencing

Bagnoli, J. W.; Ziegenhain, C.; Janjic, A.; Wange, L. E.; Vieth, B.; Parekh, S.; Geuder, J.; Hellmann, I.; Enard, W.

10.1101/188367 — genomics — Posted on 2017-10-18

776 First draft genome assembly of an iconic clownfish species (Amphiprion frenatus)

Marcionetti, A.; Rossier, V.; Bertrand, J. A. M.; Litsios, G.; Salamin, N.

10.1101/205443 — genomics — Posted on 2017-10-18

777 Distinguishing genetic correlation from causation across 52 diseases and complex traits

O'Connor, L.; Price, A. L.

10.1101/205435 — genetics — Posted on 2017-10-18

778 Plasmodium vivax-like genome sequences shed new insights into Plasmodium vivax biology and evolution

Gilabert, A.; Otto, T.; Rutledge, G.; Franzon, B.; Ollomo, B.; Arnathau, C.; Durand, P.; Moukodoum, N.; Okouga, A.-P.; Ngoubangoye, B.; Makanga, B.; Boudenga, L.; Ayala, F.; Paupy, C.; Renaud, F.; Prugnolle, F.; Rougeron, V.

10.1101/205302 — evolutionary biology — Posted on 2017-10-18

779 Single-molecule diffusion-based estimation of GPCR activity

Yanagawa, M.; Hiroshima, M.; Togashi, Y.; Yamashita, T.; Shichida, Y.; Murata, M.; Ueda, M.; Sako, Y.

10.1101/205161 — biophysics — Posted on 2017-10-18

780 Leveraging uncertainty information from deep neural networks for disease detection

Leibig, C.; Allken, V.; Seckin Ayhan, M.; Berens, P.; Wahl, S.

10.1101/084210 — bioinformatics — Posted on 2017-10-18

781 Evaluation and application of summary statistic imputation to discover new height-associated loci

Rüeger, S.; McDaid, A.; Kutalik, Z.

10.1101/204560 — genomics — Posted on 2017-10-18

782 Is thermal tolerance in non-biting midges driven by phenotypic plasticity or adaptation?

Foucault, Q.; Wieser, A.; Oppold, A.-M.; Feldmeyer, B.; Pfenninger, M.

10.1101/205195 — evolutionary biology — Posted on 2017-10-18

783 Inferring adaptive gene-flow in recent African history

Busby, G.; Christ, R.; Band, G.; Leffler, E.; Si Le, Q.; Rockett, K.; Kwiatkowski, D.; Spencer, C.

10.1101/205252 — evolutionary biology — Posted on 2017-10-18

784 Rapid feedback responses are flexibly coordinated across arm muscles to support goal-directed reaching

Weiler, J.; Gribble, P. L.; Pruszynski, J. A.

10.1101/143008 — neuroscience — Posted on 2017-10-18

785 Genetic footprint of Population Fragmentation and Contemporaneous Decline in the endangered Yangtze Finless Porpoise

Chen, M.; Fontaine, M. C.; Ben Chehida, Y.; Zheng, J.; Labbe, F.; Mei, Z.; Hao, Y.; Wang, K.; Wu, M.; Zhao, Q.; Wang, D.

10.1101/094995 — evolutionary biology — Posted on 2017-10-18

786 Resting heart rate and psychopathy: Findings from the Add Health Survey

Kavish, N. A.; Fu, Q.; Vaughn, M.; Qian, Z.; Boutwell, B.

10.1101/205005 — physiology — Posted on 2017-10-18

787 Neurobehavioural Correlates of Obesity are Largely Heritable

Vainik, U.; Baker, T. B.; Alanis, J. C. G.; Dadar, M.; Michaud, A.; Misic, B.; Zeighami, Y.; Zhang, Y.; Collins, D. L.; Dagher, A.

10.1101/204917 — neuroscience — Posted on 2017-10-18

788 Auditory motion does not modulate spiking activity in visual motion processing areas MT and MST

Chaplin, T. A.; Allitt, B. J.; Hagan, M. A.; Rosa, M. G.; Rajan, R.; Lui, L. L.

10.1101/204529 — neuroscience — Posted on 2017-10-18

789 Organizing principles of pulvino-cortical connectivity in humans

Arcaro, M.; Pinsk, M.; Chen, J.; Kastner, S.

10.1101/205039 — neuroscience — Posted on 2017-10-18

790 Pitfalls in the Assessment of Brain-Machine Interfaces Using Information Transfer Rate

Lebedev, M. A.; Tseng, P.-H.; Ifft, P. J.; Ochei, D.; Nicolelis, M. A.

10.1101/205013 — neuroscience — Posted on 2017-10-18

791 Speed tuning in the macaque posterior parietal cortex

Avila, E.; Lakshminarasimhan, K. J.; DeAngelis, G. C.; Angelaki, D. E.

10.1101/204966 — neuroscience — Posted on 2017-10-18

792 Riparian reserves in oil palm plantations may provide movement corridors for invertebrates

Gray, R. E. J.; Slade, E.; Lewis, O.

10.1101/204990 — ecology — Posted on 2017-10-18

793 A max-margin training of RNA secondary structure prediction integrated with the thermodynamic model

Akiyama, M.; Sato, K.; Sakakibara, Y.

10.1101/205047 — bioinformatics — Posted on 2017-10-18

794 Patterns and predictors of tic suppressibility in youth with tic disorders

Conelea, C. A.; Wellen, B.; Woods, D. W.; Greene, D. J.; Black, K. J.; Specht, M. W.; Himle, M. B.; Lee, H.; Capriotti, M.

10.1101/204933 — neuroscience — Posted on 2017-10-18

795 Effects of Ivermectin exposure on regeneration of D. dorotocephala planaria

Ferenc, N. N.; Levin, M.

10.1101/186650 — developmental biology — Posted on 2017-10-17

796 Invariant errors reveal limitations in motor correction rather than constraints on error sensitivity

Kim, H.; Morehead, J. R.; Parvin, D.; Moazzezi, R.; Ivry, R.

10.1101/189597 — neuroscience — Posted on 2017-10-17

797 The eardrums move when the eyes move: A multisensory effect on the mechanics of hearing

Gruters, K. G.; Murphy, D. L. K.; Jenson, C. D.; Smith, D. W.; Shera, C. A.; Groh, J. M.

10.1101/156570 — neuroscience — Posted on 2017-10-17

798 Utility of Shrimp and Der p 10 specific IgE for Shrimp Allergy Diagnosis in Non-House Dust Mite Sensitized Patients

Tuano, K. T. S.; Anvari, S.; Hanson, I. C.; Hajjar, J.; Seeborg, F.; Noroski, L. M.; Guffey, D.; Kang, G.; Orange, J. S.; Davis, C. M.

10.1101/199620 — immunology — Posted on 2017-10-17

799 An evidence-based approach to globally assess the covariate-dependent effect of MTHFR SNP rs1801133 on plasma homocysteine: a systematic review and meta-analysis

Jin, H.; Cheng, H.; Chen, W.; Sheng, X.; Brown, M.; Tian, J.

10.1101/204487 — genetics — Posted on 2017-10-17

800 StateHub-StatePaintR: rapid and reproducible chromatin state evaluation for custom genome annotation.

Coetzee, S. G.; Ramjan, Z.; Dinh, H. Q.; Berman, B. P.; Hazelett, D. J.

10.1101/127720 — bioinformatics — Posted on 2017-10-17

801 The effect of abiotic and biotic stress on the salicylic acid biosynthetic pathway from mandelonitrile in peach

Bernal-Vicente, A.; Petri, C.; Hernandez, J. A.; Diaz-Vivancos, P.

10.1101/204636 — plant biology — Posted on 2017-10-17

802 Estimation of neuronal firing rate using Bayesian Adaptive Kernel Smoother (BAKS)

Ahmadi, N.; Constandinou, T. G.; Bouganis, C.-S.

10.1101/204818 — neuroscience — Posted on 2017-10-17

803 Sexual dimorphism of complement-dependent microglial synaptic pruning in the developing brain

Prilutsky, D.; Kho, A. T.; Feiglin, A.; Hammond, T.; Stevens, B.; Kohane, I. S.

10.1101/204412 — neuroscience — Posted on 2017-10-17

804 An Mtb-Human Protein-Protein Interaction Map Reveals that Bacterial LpqN Antagonizes CBL, a Host Ubiquitin Ligase that Regulates the Balance Between Anti-Viral and Anti-Bacterial Responses

Penn, B. H.; Netter, Z.; Johnson, J. R.; Von Dollen, J.; Jang, G. M.; Johnson, T.; Ohol, Y. M.; Maher, C.; Bell, S. L.; Geiger, K.; Du, X.; Choi, A.; Parry, T.; Naramura, M.; Chen, C.; Jaeger, S.; Shales, M.; Portnoy, D. A.; Hernandez, R.; Coscoy, L.; Cox, J. S.; Krogan, N. J.

10.1101/202598 — microbiology — Posted on 2017-10-17

805 Cluster Headache: Comparing Clustering Tools for 10X Single Cell Sequencing Data

Freytag, S.; Lonnstedt, I.; Ng, M.; Bahlo, M.

10.1101/203752 — bioinformatics — Posted on 2017-10-17

806 Two coupled feedback loops explain random mono-allelic Xist upregulation at the onset of X-chromosome inactivation

Mutzel, V.; Okamoto, I.; Dunkel, I.; Saitou, M.; Giorgetti, L.; Heard, E.; Schulz, E. G.

10.1101/204909 — systems biology — Posted on 2017-10-17

807 Programmed hierarchical patterning of bacterial populations

Boehm, C. R.; Grant, P. K.; Haseloff, J.

10.1101/204925 — synthetic biology — Posted on 2017-10-17

808 Deep Learning for Multi-task Plant Phenotyping

Pound, M. P.; Atkinson, J. A.; Wells, D. M.; Pridmore, T. P.; French, A. P.

10.1101/204552 — plant biology — Posted on 2017-10-17

809 Diffusional conductance to CO2 is the key limitation to photosynthesis in salt-stressed leaves of rice (Oryza sativa)

Wang, X.; Wang, W.; Huang, J.; Peng, S.; Xiong, D.

10.1101/204578 — plant biology — Posted on 2017-10-17

810 Behavioral and biochemical effects of ethanol withdrawal in zebrafish

Chaves, S. N. S.; Felicio, G. R.; Costa, B. P. D.; Oliveira, W. E. A.; Lima, M. G.; Silva, D. H. S.; Maximino, C.

10.1101/201368 — pharmacology and toxicology — Posted on 2017-10-17

811 Transcranial real-time in vivo recording of electrophysiological neural activity in the rodent brain with near-infrared photoacoustic voltage-sensitive dye imaging

Kang, J.; Zhang, H. K.; Kadam, S. D.; Julie, F.; Valentine, H.; Kang, J. U.; Rahmim, A.; Gjedde, A.; Loew, L. M.; Wong, D. F.; Boctor, E. M.

10.1101/202408 — neuroscience — Posted on 2017-10-17

812 Rats optimally accumulate and discount evidence in a dynamic environment

Piet, A.; El Hady, A.; Brody, C. D.

10.1101/204248 — neuroscience — Posted on 2017-10-17

813 Use of a Neural Circuit Probe to Validate in silico Predictions of Inhibitory Connections

Liu, H.; Bridges, D.; Randall, C.; Solla, S. A.; Wu, B.; Hansma, P.; Yan, X.; Kosik, K. S.; Bouchard, K.

10.1101/204594 — neuroscience — Posted on 2017-10-17

814 Conservation of differentiation but transformation of initiation in hippocampal neurogenesis

Hochgerner, H.; Zeisel, A.; Lönnerberg, P.; Linnarsson, S.

10.1101/204701 — neuroscience — Posted on 2017-10-17

815 An internal sensor detects dietary amino acids and promotes food consumption in Drosophila

Yang, Z.; Huang, R.; Fu, X.; Wang, G.; Qi, W.; Shen, W.; Wang, L.

10.1101/204453 — neuroscience — Posted on 2017-10-17

816 Competitive inter-species interactions underlie the increased antimicrobial tolerance in multispecies brewery biofilms

Parijs, I.; Steenackers, H. P.

10.1101/204628 — microbiology — Posted on 2017-10-17

817 Micro-encapsulation extends mycelial viability of Streptomyces lividans 66 and increases enzyme production

Zacchetti, B.; Andrianos, A.; van Dissel, D.; de Ruiter, E.; van Wezel, G.; Claessen, D.

10.1101/204677 — microbiology — Posted on 2017-10-17

818 A map of gene expression in neutrophil-like cell lines

Rincon, E.; Rocha-Gregg, B.; Collins, S.

10.1101/204875 — genomics — Posted on 2017-10-17

819 Finite-sample genome-wide regression p-values (GWRPV) with a non-normally distributed phenotype

Connor, G.; O'Neill, M.

10.1101/204727 — genomics — Posted on 2017-10-17

820 A population phylogenetic view of mitochondrial heteroplasmy

Wilton, P.; Zaidi, A.; Makova, K.; Nielsen, R.

10.1101/204479 — genomics — Posted on 2017-10-17

821 Germline Contamination and Leakage in Whole Genome Somatic Single Nucleotide Variant Detection

Sendorek, D. H.; Caloian, C.; Ellrott, K.; Bare, J. C.; Yamaguchi, T. N.; Ewing, A. D.; Houlahan, K. E.; Norman, T. C.; Margolin, A. A.; Stuart, J. M.; Boutros, P. C.

10.1101/204370 — genomics — Posted on 2017-10-17

822 Comparative analysis examining patterns of genomic differentiation across multiple episodes of population divergence in birds

Delmore, K.; Lugo, J.; Van Doren, B. M.; Lundberg, M.; Bensch, S.; Irwin, D. E.; Liedvogel, M.

10.1101/202168 — genomics — Posted on 2017-10-17

823 Machine learning identifies signatures of host adaptation in the bacterial pathogen Salmonella enterica

Wheeler, N. E.; Gardner, P. P.; Barquist, L.

10.1101/204669 — genomics — Posted on 2017-10-17

824 Detecting genome-wide directional effects of transcription factor binding on polygenic disease risk

Reshef, Y. A.; Finucane, H. K.; Kelley, D. R.; Gusev, A.; Kotliar, D.; Ulirsch, J. C.; Hormozdiari, F.; O'Connor, L.; van de Geijn, B.; Loh, P.-R.; Grossman, S.; Bhatia, G.; Gazal, S.; Palamara, P. F.; Pinello, L.; Patterson, N.; Adams, R.; Price, A.

10.1101/204685 — genetics — Posted on 2017-10-17

825 p53 is required for female germline stem cell maintenance in P-element hybrid dysgenesis.

Tasnim, S.; Kelleher, E. S.

10.1101/204800 — genetics — Posted on 2017-10-17

826 ciRS-7 exonic sequence is embedded in a long non-coding RNA locus

Barrett, S.; Parker, K. R.; Horn, C.; Mata, M.; Salzman, J.

10.1101/169508 — genetics — Posted on 2017-10-17

827 Placeholder nucleosomes underlie germline-to-embryo DNA methylation reprogramming

Murphy, P. J.; Wu, S.; James, C. R.; Wike, C. L.; Cairns, B. R.

10.1101/204792 — developmental biology — Posted on 2017-10-17

828 C. elegans Multidrug Resistance Protein 5 (MRP-5) Transports Vitamin B12 from the Intestine to the Gonad to Support Embryonic Development

Na, H.; Ponomarova, O.; Giese, G. E.; Walhout, M. J. M.

10.1101/204735 — developmental biology — Posted on 2017-10-17

829 A small core set of transcription factors bind strongly to DNA in different cell types

Wei, B.; Jolma, A.; Sahu, B.; Orre, L. M.; Zhong, F.; Zhu, F.; Kivioja, T.; Sur, I. K.; Lehtio, J.; Taipale, M.; Taipale, J.

10.1101/204743 — cell biology — Posted on 2017-10-17

830 Fluorescence polarization control for on-off switching of single molecules at cryogenic temperatures

Hulleman, C.; Huisman, M.; Moerland, R.; Grunwald, D.; Stallinga, S.; Rieger, B.

10.1101/204776 — biophysics — Posted on 2017-10-17

831 A machine learning approach to predicting short-term mortality risk in patients starting chemotherapy

Elfiky, A.; Pany, M.; Parikh, R.; Obermeyer, Z.

10.1101/204081 — bioinformatics — Posted on 2017-10-17

832 KaryoScan: abnormal karyotype detection from whole-exome sequence

Maxwell, E. K.; Gonzaga-Jauregui, C.; McCarthy, S. E.; O'Dushlaine, C.; Staples, J.; Lopez, A. E.; Bai, X.; Penn, J.; Ulloa, R.; Gottesman, O.; Baras, A.; Dewey, F. E.; Overton, J. D.; Puffenberger, E.; Habegger, L.; Reid, J. G.

10.1101/204719 — bioinformatics — Posted on 2017-10-17

833 TASEP modelling provides a parsimonious explanation for the ability of a single uORF to upregulate downstream ORF translation during the Integrated Stress Response

Andreev, D. E.; Arnold, M.; Loughran, G.; Rachinskii, D.; Baranov, P. V.

10.1101/204784 — bioinformatics — Posted on 2017-10-17

834 A simple, consistent estimator of heritability for genome-wide association studies

Schwartzman, A.; Schork, A. J.; Zablocki, R.; Thompson, W. K.

10.1101/204446 — bioinformatics — Posted on 2017-10-17

835 MAGI: A Bayesian-like method for metabolite, annotation, and gene integration

Erbilgin, O.; Ruebel, O.; Louie, K. B.; Trinh, M.; de Raad, M.; Wildish, T.; Udwary, D. W.; Hoover, C. A.; Deutsch, S.; Northen, T. R.; Bowen, B. P.

10.1101/204362 — bioinformatics — Posted on 2017-10-17

836 Inter-slice motion correction using spatiotemporal interpolation for functional magnetic resonance imaging of the moving fetus

You, W.; Limperopoulos, C.

10.1101/204404 — bioengineering — Posted on 2017-10-17

837 Automated Reactive Accelerated Aging for Rapid In Vitro Evaluation of Neural Implants Performance

Street, M. G.; Welle, C. G.; Takmakov, P. A.

10.1101/204099 — bioengineering — Posted on 2017-10-17

838 Ethylene signaling induces gelatinous layers with typical features of tension wood in hybrid aspen

Felten, J.; Vahala, J.; Love, J.; Gorzsas, A.; Rueggeberg, M.; Delhomme, N.; Lesniewska, J.; Kangasjarvi, J.; Hvidsten, T. R.; Mellerowicz, E. J.; Sundberg, B.

10.1101/204602 — plant biology — Posted on 2017-10-17

839 The BXD Mouse Strains are a Model System for Studying Optic Nerve Regeneration

Wang, J.; Li, Y.; King, R.; Struebing, F. L.; Geisert, E. E.

10.1101/204842 — neuroscience — Posted on 2017-10-17

840 Developmental cognitive neuroscience using Latent Change Score models: A tutorial and applications

Kievit, R.; Brandmaier, A.; Ziegler, G.; van Harmelen, A.-L.; de Mooij, S.; Moutoussis, M.; Goodyer, I.; Bullmore, E.; Jones, P.; Fonagy, P.; NSPN Consortium, ; Lindenberger, U.; Dolan, R.

10.1101/110429 — neuroscience — Posted on 2017-10-17

841 Onset of natural selection in auto-catalytic heteropolymers

Tkachenko, A. V.; Maslov, S.

10.1101/204826 — evolutionary biology — Posted on 2017-10-17

842 Free Aerial Imagery as a Resource to Monitor Compliance with the Endangered Species Act

Malcom, J.; Kim, T.; Li, Y.-W.

10.1101/204750 — ecology — Posted on 2017-10-17

843 Structural basis for recognition of diverse antidepressants by the human serotonin transporter

Coleman, J.; Gouaux, E.

10.1101/204859 — biophysics — Posted on 2017-10-17

844 Sub-Confluent Culture of Mouse Embryonic Stem Cell-derived Ventricular Cardiomyocytes On & In Gels - Enhancement of Maturation Phenotype Relative to Tissue Culture Polystyrene via Enabling of Auxotonic Contraction

Mittal, N.; Atmanli, A.; Hu, D.; Groeneweg, D.; Kausel, E.; Domian, I.

10.1101/199737 — biophysics — Posted on 2017-10-17

845 Hot-starting software containers for bioinformatics analyses

Zhang, P.; Hung, L.-H.; Lloyd, W. J.; Yeung, K. Y.

10.1101/204495 — bioinformatics — Posted on 2017-10-17

846 QuASAR: Quality Assessment of Spatial Arrangement Reproducibility in Hi-C Data

Sauria, M. E.; Taylor, J.

10.1101/204438 — bioinformatics — Posted on 2017-10-17

847 ILF and vReD pathways cooperate to control lysosomal transporter protein lifetimes

McNally, E. K.; Brett, C.

10.1101/204396 — cell biology — Posted on 2017-10-17

848 Magneto-active substrates for local mechanical stimulation of living cells

Bidan, C. M.; Fratzl, M.; Coullomb, A.; Moreau, P.; Lombard, A. H.; Wang, I.; Balland, M.; Boudou, T.; Dempsey, N. M.; Devillers, T.; Dupont, A.

10.1101/204586 — biophysics — Posted on 2017-10-17

849 Light-Activated Cell Identification and Sorting (LACIS): A New Method to Identify and Select Edited Clones on a Microfluidic Device

Mocciaro, A.; Roth, T.; Bennett, H.; Soumillon, M.; Shah, A.; Hiatt, J.; Chapman, K.; Marson, A.; Lavieu, G.

10.1101/204693 — bioengineering — Posted on 2017-10-17

850 The Emergent Connectome in Caenorhabditis elegans Embryogenesis

DevoWorm Group, ; Alicea, B. J.

10.1101/146035 — bioinformatics — Posted on 2017-10-17

851 Meta-analysis of Cytometry Data Reveals Racial Differences in Immune Cells

Hu, Z.; Jujjavarapu, C.; Hughey, J. J.; Andorf, S.; Lee, H.-C.; Gherardini, P. F.; Spitzer, M. H.; Dunn, P.; Thomas, C. G.; Campbell, J.; Wiser, J.; Kidd, B. A.; Dudley, J. T.; Nolan, G. P.; Bhattacharya, S.; Butte, A. J.

10.1101/130948 — bioinformatics — Posted on 2017-10-17

852 Cortico-Cerebellar Networks Drive Sensorimotor Learning in Speech

Lametti, D. R.; Smith, H. J.; Freidin, P.; Watkins, K. E.

10.1101/177527 — neuroscience — Posted on 2017-10-17

853 Revealing intricate acto-myosin dynamics at a membrane surface using interferometric scattering microscopy

Koester, D.; Hundt, N.; Young, G. C.; Fineberg, A.; Kukura, P.; Mayor, S.

10.1101/199778 — biophysics — Posted on 2017-10-17

854 Epidemiological trade-off between intra- and interannual scales in the evolution of aggressiveness in a local plant pathogen population

Suffert, F.; Goyeau, H.; Sache, I.; Carpentier, F.; Gelisse, S.; Morais, D.; Delestre, G.

10.1101/151068 — epidemiology — Posted on 2017-10-17

855 Impaired conscious access and abnormal attentional amplification in schizophrenia

Berkovitch, L.; Del Cul, A.; Maheu, M.; Dehaene, S.

10.1101/186304 — neuroscience — Posted on 2017-10-17

856 Transcranial real-time in vivo recording of electrophysiological neural activity in the rodent brain with near-infrared photoacoustic voltage-sensitive dye imaging

Kang, J.; Zhang, H. K.; Kadam, S. D.; Julie, F.; Valentine, H.; Kang, J. U.; Rahmim, A.; Gjedde, A.; Loew, L. M.; Wong, D. F.; Boctor, E. M.

10.1101/202408 — neuroscience — Posted on 2017-10-17

857 Resting-state connectivity predicts patient-specific effects of deep brain stimulation for Parkinson’s disease

Chen, X.; Zhang, C.; Li, Y.; Huang, P.; Lv, Q.; Yu, W.; Chen, S.; Sun, B.; Wang, Z.

10.1101/203406 — neuroscience — Posted on 2017-10-17

858 ComM is a hexameric helicase that promotes branch migration during natural transformation in diverse Gram-negative species

Nero, T. M.; Dalia, T. N.; Wang, J. C.-Y.; Kysela, D. T.; Bochman, M. L.; Dalia, A. B.

10.1101/147660 — microbiology — Posted on 2017-10-17

859 Energetic costs, precision, and efficiency of a biological motor in cargo transport

Hwang, W.; Hyeon, C.

10.1101/200907 — biophysics — Posted on 2017-10-17

860 The Phonetics-Phonology Relationship in the Neurobiology of Language

Grimaldi, M.

10.1101/204156 — neuroscience — Posted on 2017-10-16

861 Homeostatic feedback, not early activity, modulates development of two-state patterned activity in the C. elegans egg-laying circuit

Ravi, B.; Garcia, J.; Collins, K. M.

10.1101/202507 — neuroscience — Posted on 2017-10-16

862 Shared High Value Research Resources: The CamCAN Human Lifespan Neuroimaging Dataset Processed on the Open Science Grid

Krieger, D.; Shepard, P.; Zusman, B.; Jana, A.; Okonkwo, D. O.

10.1101/202515 — neuroscience — Posted on 2017-10-16

863 Factors affecting genetic connectivity and diversity of the island night lizard.

Rice, S. E.; Clark, R. W.

10.1101/060038 — ecology — Posted on 2017-10-16

864 HTX: a tool for the exploration and visualization of high-throughput image assays

Arteta, C.; Lempitsky, V.; Zak, J.; Lu, X.; Noble, A.; Zisserman, A.

10.1101/204016 — bioinformatics — Posted on 2017-10-16

865 Deciphering the regulation mechanism in biochemical networks by a systems-biology approach

Mello, B.; Tu, Y.

10.1101/203901 — systems biology — Posted on 2017-10-16

866 Transcranial alternating current stimulation induces long-term augmentation of neural connectivity and sustained anxiety reduction

Clancy, K. J.; Baisley, S. K.; Albizu, A.; Kartvelishvili, N.; Ding, M.; Li, W.

10.1101/204222 — neuroscience — Posted on 2017-10-16

867 Antagonism in olfactory receptor neurons and its implications for the perception of odor mixtures

Reddy, G.; Zak, J.; Vergassola, M.; Murthy, V. N.

10.1101/204354 — neuroscience — Posted on 2017-10-16

868 A control theoretic model of adaptive behavior in dynamic environments

Ritz, H.; Nassar, M. R.; Frank, M. J.; Shenhav, A.

10.1101/204271 — neuroscience — Posted on 2017-10-16

869 Using experience to improve: How errors shape behavior and brain activity in monkeys

Pardo-Vazquez, J. L.; Acuna, C.

10.1101/203737 — neuroscience — Posted on 2017-10-16

870 Rats optimally accumulate and discount evidence in a dynamic environment

Piet, A.; El Hady, A.; Brody, C. D.

10.1101/204248 — neuroscience — Posted on 2017-10-16

871 Degeneracy in hippocampal physiology and plasticity

Rathour, R. K.; Narayanan, R.

10.1101/203943 — neuroscience — Posted on 2017-10-16

872 Transcranial real-time in vivo recording of electrophysiological neural activity in the rodent brain with near-infrared photoacoustic voltage-sensitive dye imaging

Kang, J.; Zhang, H. K.; Kadam, S. D.; Julie, F.; Valentine, H.; Kang, J. U.; Rahmim, A.; Gjedde, A.; Loew, L. M.; Wong, D. F.; Boctor, E. M.

10.1101/202408 — neuroscience — Posted on 2017-10-16

873 Propagation of spike timing and firing rate in feedforward networks reconstituted in vitro

Barral, J.; Wang, X.-J.; Reyes, A. D.

10.1101/151134 — neuroscience — Posted on 2017-10-16

874 Mud sticks after all: Chronically implanted microelectrodes but not electrical stimulation cause c-fos expression along their trajectory

Pflueger, P.; Pinnell, R. C.; Martini, N.; Hofmann, U.

10.1101/203877 — neuroscience — Posted on 2017-10-16

875 Deficit in parietal memory network underlies auditory hallucination: a longitudinal study

Guo, Q.; Hu, Y.; Zeng, B.; Tang, Y.; Zhang, T.; Wang, J.; Northoff, G.; Li, C.; Goff, D.; Wang, J.; Yang, Z.

10.1101/204008 — neuroscience — Posted on 2017-10-16

876 Improved imputation of summary statistics for realistic settings

Rüeger, S.; McDaid, A.; Kutalik, Z.

10.1101/203927 — genomics — Posted on 2017-10-16

877 p53 suppresses mutagenic RAD52 and POLθ pathways by orchestrating DNA replication restart homeostasis

Roy, S.; Tomaszowski, K.-H.; Luzwick, J. W.; Park, S.; Li, J.; Murphy, M.; Schlacher, K.

10.1101/204057 — genetics — Posted on 2017-10-16

878 Chromosome loss rate in cells of different ploidy can be explained by spindle self-organization

Jelenic, I.; Selmecki, A. M.; Laan, L.; Pavin, N.

10.1101/204230 — evolutionary biology — Posted on 2017-10-16

879 Effect of cellular de-differentiation on the dynamics and evolution of tissue and tumor cells in mathematical models with feedback regulation

Wodarz, D.

10.1101/204214 — evolutionary biology — Posted on 2017-10-16

880 Atmospheric CO2 availability does not equate to increased nodularin production in diazotrophic cyanobacteria, but does induce varying responses in net photosynthesis and N2 fixation rates.

Wannicke, N.; Gehringer, M. M.

10.1101/203869 — ecology — Posted on 2017-10-16

881 Non-invasive detection of upper tract urothelial carcinomas through the analysis of driver gene mutations and aneuploidy in urine

Springer, S. U.; Chen, C.-H.; Li, L.; Douville, C.; Wang, Y.; Cohen, J.; Afsari, B.; Danilova, L.; Silliman, N.; Schaeffer, J.; Ptak, J.; Dobbyn, L.; Papoli, M.; Kinde, I.; Huang, C.-Y.; Shun, C.-T.; Karchin, R.; Netto, G. J.; Turesky, R. J.; Yun, B. H.; Rosenquist, T. A.; Hruban, R. H.; Pu, Y.-S.; Grollman, A. P.; Tomasetti, C.; Papadopoulos, N.; Kinzler, K. W.; Vogelstein, B.; Dickman, K. G.

10.1101/203968 — cancer biology — Posted on 2017-10-16

882 Analysis of hierarchical organization in gene expression networks reveals underlying principles of collective tumor cell dissemination and metastatic aggressiveness of inflammatory breast cancer

Tripathi, S.; Jolly, M. K.; Woodward, W. A.; Levine, H.; Deem, M. W.

10.1101/204388 — cancer biology — Posted on 2017-10-16

883 Non-invasive detection of bladder cancer through the analysis of driver gene mutations and aneuploidy

Springer, S. U.; Rodriguez Pena, M. D. C.; Li, L.; Douville, C.; Wang, Y.; Cohen, J.; Taheri, D.; Silliman, N.; Schaeffer, J.; Ptak, J.; Dobbyn, L.; Papoli, M.; Kinde, I.; Afsari, B.; Tregnago, A. C.; Bezerra, S. M.; VandenBussche, C.; Fujita, K.; Ertoy, D.; Cunha, I. W.; Yu, L.; Schoenberg, M.; Bivalacqua, T. J.; Dickman, K. G.; Grollman, A. P.; Diaz, L. A.; Karchin, R.; Hruban, R. H.; Tomasetti, C.; Papadopoulos, N.; Kinzler, K. W.; Vogelstein, B.; Netto, G. J.

10.1101/203976 — cancer biology — Posted on 2017-10-16

884 Cluster Headache: Comparing Clustering Tools for 10X Single Cell Sequencing Data

Freytag, S.; Lonnstedt, I.; Ng, M.; Bahlo, M.

10.1101/203752 — bioinformatics — Posted on 2017-10-16

885 Amplification-free, CRISPR-Cas9 Targeted Enrichment and SMRT Sequencing of Repeat-Expansion Disease Causative Genomic Regions

Tsai, Y.-C.; Greenberg, D.; Powell, J.; Hoijer, I.; Ameur, A.; Strahl, M.; Ellis, E.; Jonasson, I.; Mouro Pinto, R.; Wheeler, V.; Smith, M. L.; Gyllensten, U.; Sebra, R.; Korlach, J.; Clark, T. A.

10.1101/203919 — genomics — Posted on 2017-10-16

886 Efficient generation of targeted large insertions in mouse embryos using 2C-HR-CRISPR

Gu, B.; Posfai, E.; Rossant, J.

10.1101/204339 — genetics — Posted on 2017-10-16

887 Multivariate genome-wide association study of rapid automatized naming and rapid alternating stimulus in Hispanic and African American youth.

Truong, D.; Adams, A. K.; Boada, R.; Frijters, J. C.; Hill, D. E.; Lovett, M. W.; Mahone, M. E.; Willcutt, E. G.; Wolf, M.; Pediatric, Imaging, Neurocognition, and Genetics C, ; Defries, J. C.; Fisher, S. E.; Francks, C.; Gialluisi, A.; Olson, R. K.; Pennington, B.; Smith, S. D.; Bosson-Heenan, J.; Gruen, J. R.

10.1101/202929 — genetics — Posted on 2017-10-16

888 TRPV5, TRPV6, TRPM6, and TRPM7 do not contribute to hair-cell mechanotransduction

Morgan, C. P.; Zhao, H.; LeMasurier, M.; Xiong, W.; Pan, B.; Avenarius, M. R.; Bateschell, M.; Larisch, R.; Ricci, A. J.; Mueller, U.; Barr-Gillespie, P. G.

10.1101/204172 — neuroscience — Posted on 2017-10-16

889 Phosphate starvation induces replacement of phospholipids with the betaine lipid diacylglycerol-N,N,N-trimethylhomoserine in the human fungal pathogen Candida albicans

Naik, S.; Cahoon, R.; Tripp, B.; Elowsky, C.; Alvarez, S.; Liu, K.; Zhang, C.; Riekhof, W.

10.1101/199133 — microbiology — Posted on 2017-10-16

890 A horizontally transferred autonomous Helitron became a full polydnavirus segment in Cotesia vestalis

Heringer, P.; Dias, G. B.; Kuhn, G. C. S.

10.1101/132399 — genomics — Posted on 2017-10-16

891 Measuring Selection Across HIV Gag: Combining Physico-Chemistry and Population Genetics

Gilchrist, M.; Johnson, E. B.

10.1101/204297 — evolutionary biology — Posted on 2017-10-16

892 How structural elements added in evolution from bacterial transporters serve human SLC6 homologs

Razavi, A.; Khelashvili, G.; Weinstein, H.

10.1101/204164 — biophysics — Posted on 2017-10-16

893 Reducing Pollen Dispersal using Forest Windbreaks.

Meyer, T.; Sagun, V.; Auer, C.

10.1101/204263 — plant biology — Posted on 2017-10-16

894 Epidermal expression of a sterol biosynthesis gene regulates root growth by a non-cell autonomous mechanism in Arabidopsis

Short, E.; Pullen, M.; Imriz, G.; Liu, D.; Cope-Selby, N.; Smertenko, A.; Hussey, P. J.; Topping, J. F.; Lindsey, K.

10.1101/204065 — plant biology — Posted on 2017-10-16

895 Enhanced wort fermentation with de novo lager hybrids adapted to high ethanol environments

Krogerus, K.; Holmstrom, S.; Gibson, B.

10.1101/204198 — microbiology — Posted on 2017-10-16

896 highroad is induced by retinoids and clears mutant Rhodopsin-1 in Drosophila Retinitis Pigmentosa models.

Huang, H.-W.; Brown, B.; Chung, J.; Domingos, P. M.; Ryoo, H. D.

10.1101/204131 — genetics — Posted on 2017-10-16

897 Predominant Patterns of Splicing Evolution on Human, Chimpanzee, and Macaque Evolutionary Lineages

Xiong, J.; Jiang, X.; Ditsiou, A.; Gao, Y.; Sun, J.; Lowenstein, E. D.; Huang, S.; Khaitovich, P.

10.1101/204255 — evolutionary biology — Posted on 2017-10-16

898 Coral reef carbonate budgets and ecological drivers in the naturally high temperature and high alkalinity environment of the Red Sea

Roik, A.; Rothig, T.; Pogoreutz, C.; Voolstra, C. R.

10.1101/203885 — ecology — Posted on 2017-10-16

899 The Complex Ecosystem in Non Small Cell Lung Cancer Invasion

Haney, S.; Konen, J.; Marcus, A. I.; Bazhenov, M.

10.1101/176446 — cancer biology — Posted on 2017-10-16

900 Evolutionary variance analysis of the Glycoside Hydrolase Family 13: Structural evidence in classification and evolution

Hleap, J. S.; Blouin, C.

10.1101/201251 — bioinformatics — Posted on 2017-10-16

901 DirtyGenes: significance testing for gene or bacterial population composition changes using the Dirichlet distribution

Shaw, L. M.; Blanchard, A.; Chen, Q.; An, X.; Totemeyer, S.; Zhu, Y.-G.; Stekel, D. J.

10.1101/204321 — bioinformatics — Posted on 2017-10-16

902 Obesity/Type II Diabetes Promotes Function-Limiting Changes In Flexor Tendon Extracellular Matrix Organization That Are Not Reversed By Restoring Normal Metabolic Function

Studentsova, V.; Mora, K.; Glasner, M.; Verma, N.; Oh, I.; Buckley, M.; Loiselle, A.

10.1101/143149 — pathology — Posted on 2017-10-16

903 Inferential Pitfalls In Decoding Neural Representations

Popov, V.; Ostarek, M.; Tenison, C.

10.1101/141283 — neuroscience — Posted on 2017-10-16

904 Geometric Classification of Brain Network Dynamics via Conic Derivative Discriminants

Singh, M. F.; Braver, T.; Ching, S.

10.1101/201905 — neuroscience — Posted on 2017-10-16

905 Discrete attractor dynamics underlying selective persistent activity in frontal cortex

Inagaki, H. K.; Fontolan, L.; Romani, S.; Svoboda, K.

10.1101/203448 — neuroscience — Posted on 2017-10-16

906 Successful optimization of CRISPR/Cas9-mediated defined point mutation knock-in using allele-specific PCR assays in zebrafish

Prykhozhij, S. V.; Fuller, C.; Steele, S. L.; Veinotte, C. J.; Razaghi, B.; Robitaille, J.; McMaster, C.; Shlien, A.; Malkin, D.; Berman, J. N.

10.1101/194936 — molecular biology — Posted on 2017-10-16

907 Cellular reprogramming of human monocytes is regulated by time-dependent IL4 signalling and NCOR2

Sander, J.; Schmidt, S. V.; Cirovic, B.; McGovern, N.; Papantonopoulou, O.; Hardt, A.-L.; Aschenbrenner, A.; Kreer, C.; Quast, T.; Xu, A. M.; Schmidtleithner, L. M.; Theis, H.; Do, T. H. L.; Bin Sumatoh, H. R.; Lauterbach, M. A. R.; Schulte-Schrepping, J.; Guenther, P.; Xue, J.; Bassler, K.; Ulas, T.; Klee, K.; Herresthal, S.; Krebs, W.; Martin, B.; Latz, E.; Haendler, K.; Kraut, M.; Kolanus, W.; Beyer, M.; Falk, C. S.; Wiegmann, B.; Burgdorf, S.; Melosh, N. A.; Newell, E. W.; Ginhoux, F.; Schlitzer, A.; Schultze, J. L.

10.1101/204180 — immunology — Posted on 2017-10-16

908 Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo

Gilsbach, R.; Schwaderer, M.; Preissl, S.; Gruening, B. A.; Kranzhoefer, D.; Schneider, P.; Nuehrenberg, T. G.; Mulero-Navarro, S.; Weichenhan, D.; Braun, C.; Dressen, M.; Jacobs, A. R.; Lahm, H.; Doenst, T.; Backofen, R.; Krane, M.; Gelb, B. D.; Hein, L.

10.1101/203075 — genomics — Posted on 2017-10-16

909 Concomitant Duplication Of The Cid And Cenp-C Genes In Drosophila

Teixeira, J. R.; Dias, G. B.; Svartman, M.; Ruiz, A.; Kuhn, G. C. S.

10.1101/134817 — genetics — Posted on 2017-10-16

910 A de novo missense mutation in TUBA1A results in reduced neural progenitor survival and differentiation

Driver, A.; Pitstick, A.; Mayhew, C.; Kline-Fath, B.; Saal, H.; Stottmann, R.

10.1101/201814 — genetics — Posted on 2017-10-16

911 A class of GATA3 mutation reprograms the breast cancertranscriptional network through gain and loss of function

Takaku, M.; Grimm, S. A.; Roberts, J. D.; Chrysovergis, K.; Bennett, B. D.; Myers, P.; Perera, L.; Tucker, C. J.; Perou, C. M.; Wade, P. A.

10.1101/204289 — cell biology — Posted on 2017-10-16

912 T Cell Calcium Dynamics Visualized in a Ratiometric tdTomato-GCaMP6f Transgenic Reporter Mouse

Dong, T. X.; Cahalan, M. D.; Parker, I.; Dynes, J. L.; Othy, S.; Jairaman, A.; Skupsky, J.; Zavala, A.

10.1101/203950 — cell biology — Posted on 2017-10-16

913 Combining CRISPR/Cas9 mutagenesis and a small-molecule inhibitor to probe the function of MELK in cancer

Giuliano, C. J.; Lin, A.; Smith, J. C.; Palladino, A. C.; Sheltzer, J. M.

10.1101/203984 — cancer biology — Posted on 2017-10-16

914 Super-Resolution Ultrasound Bubble Tracking for Preclinical and Clinical Multiparametric Tumor Characterization

Opacic, T.; Dencks, S.; Theek, B.; Piepenbrock, M.; Ackermann, D.; Rix, A.; Lammers, T.; Stickeler, E.; Delorme, S.; Schmitz, G.; Kiessling, F.

10.1101/203935 — cancer biology — Posted on 2017-10-16

915 Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny

Jiang, Y.; Chen, H.; Zhou, Z.; Zhang, N. R.

10.1101/195230 — bioinformatics — Posted on 2017-10-16

916 The wheat blast pathogen Pyricularia graminis-tritici has complex origins and a disease cycle spanning multiple grass hosts

Castroagudin, V.; Danelli, A.; Intra Moreira, S.; Teodora de Assis Reges, J.; Carvalho, G.; Maciel, J. L. N.; Bonato, A. L. V.; Forcelini, C. A.; Alves, E.; McDonald, B.; Croll, D.; Ceresini, P.

10.1101/203455 — plant biology — Posted on 2017-10-16

917 Galectin-3 and N-acetylglucosamine promote myogenesis and improve skeletal muscle function in the mdx model of Duchenne muscular dystrophy

Rancourt, A.; Dufresne, S.; St-Pierre, G.; Levesque, J.-C.; Nakamura, H.; Kikuchi, Y.; Satoh, M. S.; Frenette, J.; Sato, S.

10.1101/203653 — pathology — Posted on 2017-10-16

918 Modification of scale-free electrophysiological activity induced by changes in excitatory-inhibitory balance is governed by the dynamics of multiple oscillatory relaxation processes

Muthukumaraswamy, S. D.; Liley, D. T.

10.1101/203786 — neuroscience — Posted on 2017-10-16

919 An atlas of genetic variation for linking pathogen-induced cellular traits to human disease

Wang, L.; Pittman, K. J.; Barker, J. R.; Salinas, R. E.; Stanaway, I. B.; Carroll, R. J.; Balmat, T.; Ingham, A.; Gopalakrishnan, A. M.; Gibbs, K. D.; Antonia, A. L.; The eMERGE Network, ; Heitman, J.; Lee, S. C.; Jarvick, G. P.; Denny, J. C.; Delong, M. R.; Valdivia, R. H.; Crosslin, D. R.; Ko, D. C.

10.1101/202325 — genetics — Posted on 2017-10-16

920 The Common Genetic Architecture of Anxiety Disorders

Purves, K. L.; Coleman, J. R. I.; Rayner, C.; Hettema, J. M.; Deckert, J.; McIntosh, A. M.; Nicodemus, K. K.; Breen, G.; Eley, T. C.

10.1101/203844 — genetics — Posted on 2017-10-16

921 Virulence evolution of a parasite infecting male and female hosts

Wardlaw, A. M.; Agrawal, A. F.

10.1101/203687 — evolutionary biology — Posted on 2017-10-16

922 Slower environmental change hinders adaptation from standing genetic variation

Guzella, T. S.; Dey, S.; Chelo, I. M.; Pino-Querido, A.; Pereira, V. F.; Proulx, S. R.; Teotonio, H.

10.1101/203760 — evolutionary biology — Posted on 2017-10-16

923 Genome-Wide Mining, Characterization and Development of miRNA-SSRs in Arabidopsis thaliana

Kumar, A.; Aditi Chauhan, A.; Kompelli, S. K.; Gahlaut, V.; Ijaq, J.; Singh, K. P.; Gajula, M. P.; Suravajhala, P.; Mishra, A.; Balyan, H. S.; Gupta, P. K.

10.1101/203851 — bioinformatics — Posted on 2017-10-16

924 A miniaturized threshold-triggered acceleration data-logger for recording burst movements of aquatic animals

Nishiumi, N.; Matsuo, A.; Kawabe, R.; Payne, N.; Huveneers, C.; Watanabe, Y.; Kawabata, Y.

10.1101/203828 — animal behavior and cognition — Posted on 2017-10-16

925 sigQC: A procedural approach for standardising the evaluation of gene signatures

Dhawan, A.; Barberis, A.; Cheng, W.-C.; Domingo, E.; West, C.; Maughan, T.; Scott, J.; Harris, A. L.; Buffa, F. M.

10.1101/203729 — bioinformatics — Posted on 2017-10-16

926 Unsupervised detection of cell-assembly sequences with edit similarity score

Watanabe, K.; Haga, T.; Euston, D. R.; Tatsuno, M.; Fukai, T.

10.1101/202655 — neuroscience — Posted on 2017-10-16

927 Network Connectivity Determines Cortical Thinning In Early Parkinson’s Disease Progression

Yau, Y. H. C.; Zeighami, Y.; Baker, T.; Larcher, K.; Vainik, U.; Dadar, M.; Fonov, V.; Hagmann, P.; Griffa, A.; Misic, B.; Collins, D. L.; Dagher, A.

10.1101/147611 — neuroscience — Posted on 2017-10-16

928 Ttc21b is required in Bergmann glia during postnatal cerebellar development

Driver, A. M.; Shumrick, C.; Stottmann, R.

10.1101/181230 — genetics — Posted on 2017-10-16

929 Divergence estimation in the presence of incomplete lineage sorting and migration

Jones, G. R.

10.1101/174342 — evolutionary biology — Posted on 2017-10-16

930 Community evolution increases plant productivity at low diversity

van Moorsel, S. J.; Hahl, T.; Wagg, C.; De Deyn, G. B.; Flynn, D. F. B.; Zuppinger-Dingley, D.; Schmid, B.

10.1101/111617 — ecology — Posted on 2017-10-16

931 Memory entrainment by visually evoked theta-gamma coupling

Köster, M.; Martens, U.; Gruber, T.

10.1101/191189 — neuroscience — Posted on 2017-10-15

932 Discrete attractor dynamics underlying selective persistent activity in frontal cortex

Inagaki, H. K.; Fontolan, L.; Romani, S.; Svoboda, K.

10.1101/203448 — neuroscience — Posted on 2017-10-15

933 The Chromosomal Basis of Species Initiation: Prdm9 as an Anti-Speciation Gene

Forsdyke, D. R.

10.1101/170860 — evolutionary biology — Posted on 2017-10-15

934 Is having more than one CRISPR array adaptive?

Weissman, J. L.; Fagan, W. F.; Johnson, P. L. F.

10.1101/148544 — evolutionary biology — Posted on 2017-10-15

935 Resting-state connectivity predicts patient-specific effects of deep brain stimulation for Parkinson’s disease

Chen, X.; Zhang, C.; Li, Y.; Huang, P.; Lv, Q.; Yu, W.; Chen, S.; Sun, B.; Wang, Z.

10.1101/203406 — neuroscience — Posted on 2017-10-15

936 Csde1 cooperates with Strap to control translation of erythroid transcripts

Moore, K. S.; Yagci, N.; van Alphen, F.; Meijer, A. B.; 't Hoen, P. A. C.; von Lindern, M. M.

10.1101/203539 — molecular biology — Posted on 2017-10-15

937 Interference with Prdm9-controlled meiotic chromosome asynapsis overrides hybrid sterility in mice

Gregorova, S.; Gergelits, V.; Chvatalova, I.; Bhattacharyya, T.; Valiskova, B.; Fotopulosova, V.; Jansa, P.; Wiatrowska, D.; Forejt, J.

10.1101/203505 — evolutionary biology — Posted on 2017-10-15

938 Sexual conflict and STDs: coevolution of sexually antagonistic host traits with a sexually transmitted disease

Wardlaw, A. M.; Agrawal, A. F.

10.1101/203695 — evolutionary biology — Posted on 2017-10-15

939 Multi-step regulation of transcription kinetics explains the non-linear relation between RNA polymerase II density and mRNA expression in Dosage Compensation

Dasmeh, P.

10.1101/203596 — biophysics — Posted on 2017-10-15

940 SIRT2 and lysine fatty acylation regulate the oncogenic activity of K-Ras4a

Jing, H.; Zhang, X.; Wisner, S. A.; Chen, X.; Spiegelman, N. A.; Linder, M. E.; Lin, H.

10.1101/203638 — biochemistry — Posted on 2017-10-15

941 microRNA-triggered transposon small RNAs mediate genome dosage response

Borges, F.; Parent, J.-S.; van Ex, F.; Wolff, P.; Martinez, G.; Kohler, C.; Martienssen, R. A.

10.1101/203612 — plant biology — Posted on 2017-10-15

942 Paternal easiRNAs regulate parental genome dosage in Arabidopsis

Martinez, G.; Wolff, P.; Wang, Z.; Moreno-Romero, J.; Santos-Gonzalez, J.; Liu Conze, L.; DeFraia, C.; Slotkin, K.; Kohler, C.

10.1101/203299 — plant biology — Posted on 2017-10-15

943 Stretching the skin of the fingertip creates a perceptual and motor illusion of touching a harder spring

Farajian, M.; Leib, R.; Zaidenberg, T.; Mussa-Ivaldi, F.; Nisky, I.

10.1101/203604 — neuroscience — Posted on 2017-10-15

944 SPANOL (SPectral ANalysis Of Lobes): A spectral clustering framework for individual and group parcellation of cortical surfaces in lobes

Lefevre, J.; Pepe, A.; Muscato, J.; De Guio, F.; Girard, N.; Auzias, G.; Germanaud, D.

10.1101/203513 — neuroscience — Posted on 2017-10-15

945 Csde1 binds transcripts involved in protein homeostasis and controls their expression in erythropoiesis

Moore, K. S.; Yagci, N.; van Alphen, F.; Paolini, N. A.; horos, R.; Held, N. M.; Houtkooper, R. H.; van den Akker, E.; Meijer, A. B.; 't Hoen, P. A. C.; von Lindern, M.

10.1101/203497 — molecular biology — Posted on 2017-10-15

946 Streptococcus pneumoniae possesses an unexpectedly large bacteriocin repertoire

Rezaei Javan, R.; van Tonder, A. J.; King, J. P.; Brueggemann, A. B.

10.1101/203398 — genomics — Posted on 2017-10-15

947 Genomics in healthcare: GA4GH looks to 2022

Birney, E.; Vamathevan, J.; Goodhand, P.

10.1101/203554 — genomics — Posted on 2017-10-15

948 Weighted burden analysis of exome-sequenced case-control sample implicates synaptic genes in schizophrenia aetiology

Curtis, D.; Coelewij, L.; Liu, S.-H.; Humphrey, J.; Mott, R.

10.1101/203521 — genetics — Posted on 2017-10-15

949 Reproductive mode, stem cells and regeneration in a freshwater cnidarian with post-reproductive senescence

Sebestyen, F.; Barta, Z.; Tokolyi, J.

10.1101/203646 — evolutionary biology — Posted on 2017-10-15

950 New Insights into the Conformational Activation of Full-Length Integrin

Bidone, T. C.; Polley, A.; Durumeric, A. E. P.; Driscoll, T.; Iwamoto, D.; Calderwood, D.; Schwartz, M. A.; Voth, G. A.

10.1101/203661 — biophysics — Posted on 2017-10-15

951 Sequence fingerprints distinguish erroneous from correct predictions of Intrinsically Disordered Protein Regions

Saravanan, K. M.; Dunker, K.; Krishnaswamy, S.

10.1101/203547 — bioinformatics — Posted on 2017-10-15

952 Predicting serious rare adverse reactions of novel chemicals

Poleksic, A.; Xie, L.

10.1101/160473 — pharmacology and toxicology — Posted on 2017-10-15

953 In vivo brain activity imaging of interactively locomoting mice

Inagaki, S.; Agetsuma, M.; Ohara, S.; Iijima, T.; Wazawa, T.; Arai, Y.; Nagai, T.

10.1101/203422 — neuroscience — Posted on 2017-10-15

954 Local Connectome Phenotypes Predict Social, Health, and Cognitive Factors

Powell, M.; Garcia, J.; Yeh, F.-C.; Vettel, J.; Verstynen, T.

10.1101/122945 — neuroscience — Posted on 2017-10-15

955 Stereotypical Modulations In Dynamic Functional Connectivity Explained By Changes In BOLD Variance

Glomb, K.; Ponce-Alvarez, A.; Gilson, M.; Ritter, P.; Deco, G.

10.1101/126524 — neuroscience — Posted on 2017-10-15

956 Shared High Value Research Resources: The CamCAN Human Lifespan Neuroimaging Dataset Processed on the Open Science Grid

Krieger, D.; Shepard, P.; Zusman, B.; Jana, A.; Okonkwo, D. O.

10.1101/202515 — neuroscience — Posted on 2017-10-15

957 Discrete attractor dynamics underlying selective persistent activity in frontal cortex

Inagaki, H.; Fontolan, L.; Romani, S.; Svoboda, K.

10.1101/203448 — neuroscience — Posted on 2017-10-15

958 Low-dimensional and monotonic preparatory activity in mouse anterior lateral motor cortex

Inagaki, H. K.; Inagaki, M.; Romani, S.; Svoboda, K.

10.1101/203414 — neuroscience — Posted on 2017-10-15

959 Clonal heterogeneity influences the fate of new adaptive mutations

Vazquez-Garcia, I.; Salinas, F.; Li, J.; Fischer, A.; Barre, B.; Hallin, J.; Bergström, A.; Alonso-Perez, E.; Warringer, J.; Mustonen, V.; Liti, G.

10.1101/039859 — genetics — Posted on 2017-10-15

960 Diagnostic Prediction Tools For Bacteraemia Caused By 3rd Generation Cephalosporin-Resistant Enterobacteriaceae In Suspected Bacterial Infections: A Nested Case-Control Study

Rottier, W. C.; van Werkhoven, C. H.; Bamberg, Y. R. P.; Dorigo-Zetsma, J. W.; van de Garde, E. M.; van Hees, B. C.; Kluytmans, J. A. J. W.; Kuck, E. M.; van der Linden, P. D.; Prins, J. M.; Thijsen, S. F. T.; Verbon, A.; Vlaminckx, B. J. M.; Ammerlaan, H. S. M.; Bonten, M. J. M.

10.1101/120550 — epidemiology — Posted on 2017-10-15

961 Carbon inputs from riparian vegetation limit oxidation of physically-bound organic carbon via biochemical and thermodynamic processes

Graham, E. B.; Tfaily, M.; Crump, A. R.; Goldman, A. E.; Bramer, L.; Arntzen, E.; Romero, E.; Resch, C. T.; Kennedy, D. W.; Stegen, J. C.

10.1101/105486 — ecology — Posted on 2017-10-15

962 Leveraging molecular QTL to understand the genetic architecture of diseases and complex traits

Hormozdiari, F.; Gazal, S.; Geijn, B. v. d.; Finucane, H.; Ju, C. J.- T.; Loh, P.-R.; Schoech, A.; Reshef, Y.; Liu, X.; O'Connor, L.; Gusev, A.; Eskin, E.; Price, A.

10.1101/203380 — genetics — Posted on 2017-10-15

963 Methods for addressing the protein-protein interaction between histone deacetylase 6 and ubiquitin

dos Santos Passos, C.; Deschamps, N.; Choi, Y.; Cohen, R. E.; Perozzo, R.; Nurisso, A.; Simoes-Pires, C.

10.1101/203372 — biochemistry — Posted on 2017-10-15

964 Awake fMRI Reveals Covert Arousal in Aggressive Dogs Under Social Resource Threat

Cook, P.; Prichard, A.; Spivak, M.; Berns, G. S.

10.1101/203323 — neuroscience — Posted on 2017-10-14

965 Relevance of host cell surface glycan structure for cell specificity of influenza A virus

Kastner, M.; Karner, A.; Zhu, R.; Huang, Q.; Zhang, D.; Liu, J.; Geissner, A.; Sadewasser, A.; Lesch, M.; Woermann, X.; Karlas, A.; Seeberger, P.; Wolff, T.; Hinterdorfer, P.; Herrmann, A.; Sieben, C.

10.1101/203349 — microbiology — Posted on 2017-10-14

966 Single-cell transcriptional dynamics of flavivirus infection

Zanini, F.; Pu, S.-Y.; Bekerman, E.; Einav, S.; Quake, S. R.

10.1101/203331 — microbiology — Posted on 2017-10-14

967 Transcriptome analysis reveals the differences between cellular response to ribosomal stress and translational stress

Shamsuzzaman, M.; Gregory, B.; Bruno, V.; Lindahl, L.

10.1101/203356 — genomics — Posted on 2017-10-14

968 The genomics of local adaptation in trees: Are we out of the woods yet?

Lind, B. M.; Menon, M.; Bolte, C. E.; Faske, T. M.; Eckert, A. J.

10.1101/203307 — evolutionary biology — Posted on 2017-10-14

969 Decisions are expedited through multiple neural adjustments spanning the sensorimotor hierarchy

Steinemann, N. A.; O'Connell, R. G.; Kelly, S. P.

10.1101/203141 — neuroscience — Posted on 2017-10-14

970 Skill Acquisition and Habit Formation as Distinct Effects of Practice

Hardwick, R. M.; Forrence, A. D.; Krakauer, J. W.; Haith, A. M.

10.1101/201095 — neuroscience — Posted on 2017-10-14

971 Polygenic risk scores applied to a single cohort reveal pleiotropy among hundreds of human phenotypes

Socrates, A.; Bond, T.; Karhunen, V.; Auvinen, J.; Rietveld, C.; Veijola, J.; Jarvelin, M.-R.; O'Reilly, P.

10.1101/203257 — genetics — Posted on 2017-10-14

972 Cell-specific modulation of nuclear pore complexes controls cell cycle entry during asymmetric division

Kumar, A.; Sharma, P.; Shcheprova, Z.; Daulny, A.; Sanmartin, T.; Matucci, I.; Funaya, C.; Beato, M.; Mendoza, M.

10.1101/203232 — cell biology — Posted on 2017-10-14

973 Genome-wide and high-density CRISPR-Cas9 screens identify point mutations in PARP1 causing PARP inhibitor resistance

Pettitt, S. J.; Krastev, D. B.; Brandsma, I.; Drean, A.; Song, F.; Aleksandrov, R.; Harrell, M. I.; Menon, M.; Brough, R.; Campbell, J.; Frankum, J.; Ranes, M.; Pemberton, H. N.; Rafiq, R.; Fenwick, K.; Swain, A.; Guettler, S.; Lee, J.-M.; Swisher, E. M.; Stoynov, S.; Yusa, K.; Ashworth, A.; Lord, C. J.

10.1101/203224 — cancer biology — Posted on 2017-10-14

974 Bimodal Spindle Orientation Drives Tissue Regularity in a Proliferating Epithelium

Finegan, T. M.; Na, D.; Skeeters, A. V.; Dawney, N. S.; Oakes, P. W.; Fletcher, A. G.; Bergstralh, D. T.

10.1101/178517 — developmental biology — Posted on 2017-10-14

975 Transcriptome Deconvolution of Heterogeneous Tumor Samples with Immune Infiltration

Wang, Z.; Cao, S.; Morris, J. S.; Ahn, J.; Liu, R.; Tyekucheva, S.; Gao, F.; Li, B.; Lu, W.; Tang, X.; Wistuba, I. I.; Bowden, M.; Mucci, L.; Loda, M.; Parmigiani, G.; Holmes, C. C.; Wang, W.

10.1101/146795 — bioinformatics — Posted on 2017-10-14

976 A duplex MIPs-based biological-computational cell lineage discovery platform

Tao, L.; Raz, O.; Marx, Z.; Biezuner, T.; Amir, S.; Milo, L.; Adar, R.; Onn, A.; Chapal-Ilani, N.; Berman, V.; Levy, R.; Oron, B.; Shapiro, E.

10.1101/191296 — systems biology — Posted on 2017-10-14

977 Pseudoneglect in visual search: Behavioral evidence and simulated neural circuitry

Gigliotta, O.; Seidel Malkinson, T.; Miglino, O.; Bartolomeo, P.

10.1101/129171 — neuroscience — Posted on 2017-10-14

978 N6-methyladenosine modification and the YTHDF2 reader protein play cell type specific roles in lytic viral gene expression during Kaposi’s sarcoma-associated herpesvirus infection

Hesser, C.; Karijolich, J.; Dominissini, D.; He, C.; Glaunsinger, B. A.

10.1101/201475 — microbiology — Posted on 2017-10-14

979 Propagation of BOLD activity reveals task-dependent directed interactions across human visual cortex

Gravel, N.; Renken, R. J.; Harvey, B. M.; Deco, G.; Cornelissen, F. W.; Gilson, M.

10.1101/172452 — neuroscience — Posted on 2017-10-13

980 The kinetics of pre-mRNA splicing in the Drosophila genome: influence of gene architecture

Pai, A. A.; Henriques, T.; McCue, K.; Burkholder, A.; Adelman, K.; Burge, C. B.

10.1101/107995 — genomics — Posted on 2017-10-13

981 Plasmodium falciparum infection during pregnancy impairs fetal head growth: prospective and populational-based retrospective studies

Dombrowski, J. G.; Souza, R. M.; Lima, F. A.; Bandeira, C. L.; Murillo, O.; Costa, D. S.; Peixoto, E. P. M.; Cunha, M. P.; Zanotto, P. M. A.; Bevilacqua, E.; Grisotto, M. A. G.; Lima, A. C. P.; Singer, J. M.; Campino, S.; Clark, T. G.; Epiphanio, S.; Goncalves, L. A.; Marinho, C. R. F.

10.1101/203059 — epidemiology — Posted on 2017-10-13

982 The Genetic Chain Rule for Probabilistic Kinship Estimation

Helfer, B. S.; Fremont-Smith, P.; Ricke, D. O.

10.1101/202879 — bioinformatics — Posted on 2017-10-13

983 Cardio- and neurometabolic effects of lower-body pressure supported exercise in obese non-diabetic women: Resetting autonomic imbalance?

Godwin, E. M.; Uglialoro, A. D.; Ali, A.; Yearwood, L.; Banerji, M. A.; Kral, J. G.

10.1101/202986 — physiology — Posted on 2017-10-13

984 Towards a neuroscientific understanding of play: A neuropsychological coding framework for analysing infant-adult play patterns

Neale, D.; Clackson, K.; Georgieva, S.; Dedetas, H.; Wass, S.; Leong, V.

10.1101/202648 — neuroscience — Posted on 2017-10-13

985 Strong homeostatic TCR signals induce formation of self-tolerant virtual memory CD8 T cells

Drobek, A.; Moudra, A.; Mueller, D.; Huranova, M.; Horkova, V.; Pribikova, M.; Ivanek, R.; Oberle, S.; Zehn, D.; McCoy, K. D.; Draber, P.; Stepanek, O.

10.1101/202218 — immunology — Posted on 2017-10-13

986 GM-CSF negatively regulates early IL-10 mediated responses

Wilbers, R. H. P.; Westerhof, L. B.; van Raaij, D. R.; Smant, G.; Bakker, J.; Schots, A.

10.1101/202317 — immunology — Posted on 2017-10-13

987 6-OHDA-induced dopaminergic neurodegeneration in C. elegans is promoted by the engulfment pathway and inhibited by the transthyretin-related protein TTR-33

Offenburger, S.-L.; Ho, X. Y.; Tachie-Menson, T.; Coakley, S.; Hilliard, M. A.; Gartner, A.

10.1101/198606 — genetics — Posted on 2017-10-13

988 Modular environmental pleiotropy of genes involved in local adaptation to climate despite physical linkage

Lotterhos, K.; Hodgins, K.; Yeaman, S.; Degner, J.; Aitken, S.

10.1101/202481 — evolutionary biology — Posted on 2017-10-13

989 Morphogen dynamics control patterning in a stem cell model of the human embryo

Heemskerk, I.; Burt, K.; Miller, M.; Chabra, S.; Guerra, M. C.; Warmflash, A.

10.1101/202366 — developmental biology — Posted on 2017-10-13

990 Coupling of Polo kinase activation to nuclear localization by a bifunctional NLS is required during mitotic entry.

Kachaner, D.; Garrido, D.; Mehsen, H.; Normandin, K.; Lavoie, H.; Archambault, V.

10.1101/202440 — cell biology — Posted on 2017-10-13

991 FACSanadu: Graphical user interface for rapid visualization and quantification of flow cytometry data

Bürglin, T. R.; Henriksson, J.

10.1101/201897 — bioinformatics — Posted on 2017-10-13

992 Bird songs on the shelf: assessing vocal activity and output using data hidden in sound archives

Laverde-R., O.; Caycedo-Rosales, P.; Pulgarin-R., P.-C.; Cadena, C. D.

10.1101/202978 — zoology — Posted on 2017-10-13

993 Geometric Classification of Brain Network Dynamics via Conic Derivative Discriminants

Singh, M. F.; Braver, T.; Ching, S.

10.1101/201905 — neuroscience — Posted on 2017-10-13

994 Blindfold learning of an accurate neural metric

Gardella, C.; Marre, O.; Mora, T.

10.1101/203117 — neuroscience — Posted on 2017-10-13

995 The correspondence problem: which brain maps are significantly similar?

Alexander-Bloch, A.; Vandekar, S. N.; Shinohara, R. T.; Liu, S.; Satterthwaite, T. D.; Glahn, D. C.; Raznahan, A.

10.1101/203083 — neuroscience — Posted on 2017-10-13

996 Action boosts episodic memory encoding in humans via engagement of a noradrenergic system.

Yebra, M.; Galarza-Vallejo, A.; Soto-Leon, V.; Gonzalez-Rosa, J. J.; de Berker, A. O.; Bestmann, S.; Oliviero, A.; Kroes, M. C.; Strange, B. A.

10.1101/203034 — neuroscience — Posted on 2017-10-13

997 Unsupervised detection of cell-assembly sequences with edit similarity score

Watanabe, K.; Haga, T.; Euston, D. R.; Tatsuno, M.; Fukai, T.

10.1101/202655 — neuroscience — Posted on 2017-10-13

998 Simulating human sleep spindle MEG and EEG from ion channel and circuit level dynamics

Rosen, B. Q.; Krishnan, G.; Sanda, P.; Komarov, M.; Sejnowski, T.; Rulkov, N.; Bazhenov, M.; Halgren, E.

10.1101/202606 — neuroscience — Posted on 2017-10-13

999 Working memory and reasoning tasks are associated with different modes of large-scale brain dynamics in healthy older adults

Lebedev, A. V.; Nilsson, J.; Lovden, M.

10.1101/202630 — neuroscience — Posted on 2017-10-13

1000 Temporally discontinuous engagement of the vmPFC in remote memory retrieval

Barry, D. N.; Chadwick, M. J.; Maguire, E. A.

10.1101/202689 — neuroscience — Posted on 2017-10-13

1001 Shared High Value Research Resources: The CamCAN Human Lifespan Neuroimaging Dataset Processed on the Open Science Grid

Krieger, D.; Shepard, P.; Zusman, B.; Jana, A.; Okonkwo, D. O.

10.1101/202515 — neuroscience — Posted on 2017-10-13

1002 The Antiviral and Cancer Genomic DNA Deaminase APOBEC3H Is Regulated by a RNA-Mediated Dimerization Mechanism

Harris, R.; Shaban, N.; Shi, K.; Lauer, K.; Carpenter, M.; Richards, C.; Lopresti, M.; Salamango, D.; Wang, J.; Banerjee, S.; Brown, W.; Aihara, H.

10.1101/203000 — microbiology — Posted on 2017-10-13

1003 An Mtb-Human Protein-Protein Interaction Map Reveals that Bacterial LpqN Antagonizes CBL, a Host Ubiquitin Ligase that Regulates the Balance Between Anti-Viral and Anti-Bacterial Responses

Penn, B. H.; Netter, Z.; Johnson, J. R.; Ohol, Y. M.; Maher, C.; Bell, S. L.; Von Dollen, J.; Du, X.; Choi, A.; Geiger, K.; Parry, T.; Naramura, M.; Jang, G. M.; Johnson, T.; Chen, C.; Jaeger, S.; Shales, M.; Portnoy, D. A.; Hernandez, R.; Coscoy, L.; Krogan, N. J.; Cox, J.

10.1101/202598 — microbiology — Posted on 2017-10-13

1004 The Smc5/6 complex belongs to a novel class of evolutionary-constrained restriction factors and is antagonized by all mammalian hepatitis B virus X proteins

Filleton, F.; Abdul, F.; Gerossier, L.; Paturel, A.; Hall, J.; Strubin, M.; Etienne, L.

10.1101/202671 — microbiology — Posted on 2017-10-13

1005 Experimental infection of cattle with Mycobacterium tuberculosis isolates shows the attenuation of the human tubercle bacillus for cattle

10.1101/202663 — immunology — Posted on 2017-10-13

1006 High-throughput single-cell DNA sequencing of AML tumors with droplet microfluidics

Pellegrino, M.; Sciambi, A.; Treusch, S.; Gokhale, K.; Jacob, J.; Chen, T. X.; Oldham, W.; Durruthy-Durruthy, R.; Matthews, J.; Kantarjian, H.; Futreal, P. A.; Jones, K. W.; Takahashi, K.; Eastburn, D. J.

10.1101/203158 — genomics — Posted on 2017-10-13

1007 Addressing confounding artifacts in reconstruction of gene co-expression networks

Parsana, P.; Ruberman, C.; Jaffe, A. E.; Schatz, M. C.; Battle, A.; Leek, J. T.

10.1101/202903 — genomics — Posted on 2017-10-13

1008 Paleo-Eskimo genetic legacy across North America

Flegontov, P.; Altinisik, N. E.; Changmai, P.; Rohland, N.; Mallick, S.; Bolnick, D. A.; Candilio, F.; Flegontova, O.; Jeong, C.; Harper, T. K.; Keating, D.; Kennett, D. J.; Kim, A. M.; Lamnidis, T. C.; Olalde, I.; Raff, J.; Sattler, R. A.; Skoglund, P.; Vajda, E. J.; Vasilyev, S.; Veselovskaya, E.; Hayes, M. G.; O'Rourke, D. H.; Pinhasi, R.; Krause, J.; Reich, D.; Schiffels, S.

10.1101/203018 — genetics — Posted on 2017-10-13

1009 Genomic Locus Modulating IOP in the BXD RI Mouse Strains

King, R. A.; Li, Y.; Wang, J.; Struebing, F.; Geisert, E.

10.1101/202937 — genetics — Posted on 2017-10-13

1010 Mutations in C. elegans neuroligin-like glit-1, the apoptosis pathway and the calcium chaperone crt-1 increase dopaminergic neurodegeneration after 6-OHDA treatment

Offenburger, S.-L.; Jongsma, E.; Gartner, A.

10.1101/203067 — genetics — Posted on 2017-10-13

1011 Modified hCFTR mRNA restores normal lung function in a mouse model of cystic fibrosis

Haque, A. K. M. A.; Dewerth, A.; Antony, J. S.; Riethmüller, J.; Latifi, N.; Yasar, H.; Weinmann, P.; Pedemonte, N.; Sondo, E.; Laval, J.; Schlegel, P.; Seitz, C.; Loretz, B.; Lehr, C.-M.; Handgretinger, R.; Kormann, M. S. D.

10.1101/202853 — genetics — Posted on 2017-10-13

1012 Heterogeneity in local density allows a positive evolutionary relationship between self-fertilisation and dispersal

Rodger, J. G.; Landi, P.; Hui, C.

10.1101/203042 — evolutionary biology — Posted on 2017-10-13

1013 Passenger mutations can accelerate tumor suppressor gene inactivation in cancer evolution

Wodarz, D.; Newell, A.; Komarova, N.

10.1101/202531 — evolutionary biology — Posted on 2017-10-13

1014 Rapid genome sequencing for outbreak analysis of the emerging human fungal pathogen Candida auris

Rhodes, J.; Abdolrasouli, A.; Farrer, R. A.; Cuomo, C. A.; Aanensen, D. M.; Armstrong-James, D.; Fisher, M. C.; Schelenz, S.

10.1101/201343 — epidemiology — Posted on 2017-10-13

1015 Proteolytic control of centrosome activity by APC/C-Polo maintains oocyte fate in Drosophila

Braun, A. L.; Meghini, F.; Villa-Fombuena, G.; Fernandez, E. M.; Guermont, M.; Martin-Bermudo, M. D.; Gonzalez-Reyes, A.; Kimata, Y.

10.1101/202465 — developmental biology — Posted on 2017-10-13

1016 Four new induced pluripotent stem cell lines produced from northern white rhinoceros with non-integrating reprogramming factors

Korody, M. L.; Pivaroff, C.; Nguyen, T. D.; Peterson, S. E.; Ryder, O. A.; Loring, J. F.

10.1101/202499 — developmental biology — Posted on 2017-10-13

1017 Optimal Therapy Scheduling Based on a Pair of Collaterally Sensitive Drugs

Yoon, N.; Vander Velde, R.; Marusyk, A.; Scott, J.

10.1101/196824 — cancer biology — Posted on 2017-10-13

1018 RECONSTITUTION OF HELICAL SOLUBLE α-SYNUCLEIN THROUGH TRANSIENT INTERACTION WITH LIPID INTERFACES

Rovere, M.; Sanderson, J. B.; Fonseca-Ornelas, L.; Bartels, T.

10.1101/202994 — biophysics — Posted on 2017-10-13

1019 A unified computational framework for modeling genome-wide nucleosome landscape

Jin, H.; Finnegan, A. I.; Song, J. S.

10.1101/202580 — bioinformatics — Posted on 2017-10-13

1020 The representational dynamics of task and object category processing in humans

Hebart, M. N.; Bankson, B. B.; Harel, A.; Baker, C. I.; Cichy, R. M.

10.1101/153684 — neuroscience — Posted on 2017-10-13

1021 Induction of autophagy by trehalose limits opportunistic mycobacterial infections in HIV-infected macrophages

Sharma, V.; Makhdoomi, M.; Kumar, P.; Khan, N.; Singh, S.; Verma, H. N.; Luthra, K.; Sarkar, S.; Kumar, D.

10.1101/202697 — immunology — Posted on 2017-10-13

1022 Increased pollination specialization did not increase corolla shape constraints in Antillean plants

Joly, S.; Lambert, F.; Alexandre, H.; Clavel, J.; Leveille-Bourret, E.; Clark, J. L.

10.1101/041533 — evolutionary biology — Posted on 2017-10-13

1023 Target immunity levels for achieving and maintaining measles elimination

Funk, S.; Knapp, J. K.; Lebo, E.; Reef, S. E.; Dabbagh, A. J.; Kretsinger, K.; Jit, M.; Edmunds, W. J.; Strebel, P. M.

10.1101/201574 — epidemiology — Posted on 2017-10-13

1024 Role of monkeys in the sylvatic cycle of chikungunya virus in Senegal

Althouse, B. M.; Guerbois, M.; Cummings, D. A. T.; Diop, O.; Faye, O.; Faye, A.; Diallo, D.; Sadio, B. D.; Sow, A.; Faye, O.; Sall, A. A.; Diallo, M.; Benefit, B.; Simmons, E.; Watts, D. M.; Weaver, S. C.; Hanley, K. A.

10.1101/079046 — ecology — Posted on 2017-10-13

1025 An interventional Soylent diet increases the Bacteroidetes to Firmicutes ratio in human gut microbiome communities: a randomized controlled trial

Hsu, R. H.; McCormick, D. M.; Seitz, M. L. J.; Lui, L. M.; Rishi, H. S.; Arkin, A. P.

10.1101/200881 — clinical trials — Posted on 2017-10-13

1026 Comprehensive single cell RNAseq analysis of the kidney reveals novel cell types and unexpected cell plasticity

Park, J.; Shrestha, R.; Qiu, C.; Kondo, A.; Huang, S.; Werth, M.; Li, M.; Barasch, J.; Susztak, K.

10.1101/203125 — cell biology — Posted on 2017-10-13

1027 Comparative transcriptome profiling of the human and mouse dorsal root ganglia: An RNA-seq-based resource for pain and sensory neuroscience research

Ray, P.; Torck, A.; Quigley, L.; Wangzhou, A.; Neiman, M.; Rao, C.; Lam, T.; Kim, J.-Y.; Kim, T. H.; Zhang, M. Q.; Dussor, G.; Price, T. J.

10.1101/165431 — neuroscience — Posted on 2017-10-13

1028 Modernized tools for streamlined genetic manipulation of wild and diverse symbiotic bacteria

Wiles, T. J.; Wall, E. S.; Schlomann, B. H.; Hay, E. A.; Parthasarathy, R.; Guillemin, K.

10.1101/202861 — genetics — Posted on 2017-10-13

1029 A novel core promoter element induces bidirectional transcription in CpG island

Mahpour, A.; Smiraglia, D.; Scruggs, B. S.; Gelman, I.; Ouchi, T.

10.1101/202622 — cell biology — Posted on 2017-10-13

1030 The Genetic Chain Rule for Probabilistic Kinship Estimation

Helfer, B. S.; Fremont-Smit, P.; Ricke, D. O.

10.1101/202879 — bioinformatics — Posted on 2017-10-13

1031 What’s in the box? Authentication of Echinacea herbal products using DNA metabarcoding and HPTLC

Raclariu, A. C.; Tebrencu, C. E.; Ichim, M. C.; Ciuperca, O. T.; Brysting, A. K.; de Boer, H. J.

10.1101/202721 — plant biology — Posted on 2017-10-13

1032 Females recruit faster alpha motor neurons than males during the patellar stretch reflex: evidence for neurophysiological sexual dimorphism

Tindell, G.; Smith, P. A.

10.1101/202713 — physiology — Posted on 2017-10-13

1033 H2S mediates interbacterial communication through the air reverting intrinsic antibiotic resistance

Thomas-Lopez, D.; Carrilero, L.; Matrat, S.; Montero, N.; Claverol, S.; Filipovic, M. R.; Gonzalez-Zorn, B.

10.1101/202804 — microbiology — Posted on 2017-10-13

1034 Plasmodium falciparum dipeptidyl aminopeptidase 3 activity is important for efficient erythrocyte invasion.

Lehmann, C.; Tan, M. S. Y.; de Vries, L. E.; Russo, I.; Sanchez, M. I.; Goldberg, D. A.; Deu, E.

10.1101/202812 — microbiology — Posted on 2017-10-13

1035 Autosomal recessive coding variants explain only a small proportion of undiagnosed developmental disorders in the British Isles

Martin, H. C.; Jones, W. D.; Stephenson, J.; Handsaker, J.; Gallone, G.; McRae, J. F.; Prigmore, E.; Short, P.; Niemi, M.; Kaplanis, J.; Radford, E.; Akawi, N.; Balasubramanian, M.; Dean, J.; Horton, R.; Hulbert, A.; Johnson, D. S.; Johnson, K.; Kumar, D.; Lynch, S. A.; Mehta, S. G.; Morton, J.; Parker, M. J.; Splitt, M.; Turnpenny, P. D.; Vasudevan, P. C.; Wright, M.; Wright, C. F.; FitzPatrick, D. R.; Firth, H. V.; Hurles, M. E.; Barrett, J. C.

10.1101/201533 — genetics — Posted on 2017-10-13

1036 Identification of genetic factors controlling domestication-related traits in cowpea (Vigna unguiculata L. Walp)

Lo, S.; Munoz-Amatriain, M.; Boukar, O.; Herniter, I.; Cisse, N.; Guo, Y.-N.; Roberts, P. A.; Xu, S.; Fatokun, C.; Close, T. J.

10.1101/202044 — genetics — Posted on 2017-10-13

1037 Detecting T cell receptor rearrangements in silico from non-targeted DNA-sequencing (WGS/WES)

McGrath, L.; Lubinski, T.; Barrett, J. C.; Gardner, H.

10.1101/201947 — bioinformatics — Posted on 2017-10-13

1038 HYPO: A database of hypothetical human proteins

Sundararajan, V. S.; Malik, G.; Ijaq, J.; Kumar, A.; Das, P. S.; R, S. P.; Nair, A. S.; Suravajhala, P.; Dhar, P.

10.1101/202887 — bioinformatics — Posted on 2017-10-13

1039 Base-resolution mapping reveals distinct m1A methylome in nuclear- and mitochondrial-encoded transcripts

Li, X.; Xiong, X.; Zhang, M.; Wang, K.; Chen, Y.; Zhou, J.; Mao, Y.; Lv, J.; Yi, D.; Chen, X.-W.; Wang, C.; Qian, S.-B.; Yi, C.

10.1101/202747 — biochemistry — Posted on 2017-10-13

1040 TPXL-1 Activates Aurora A to Clear Contractile Ring Components from the Polar Cortex During Cytokinesis

Mangal, S.; Sacher, J.; Kim, T.; Osorio, D. S.; Motegi, F.; Carvalho, A. X.; Oegema, K.; Zanin, E.

10.1101/202895 — cell biology — Posted on 2017-10-13

1041 Contact inhibitory Eph signalling decouples EGFR activity from vesicular recycling to generate contextual plasticity

Stallaert, W.; Sabet, O.; Bruggemann, Y.; Baak, L.; Bastiaens, P.

10.1101/202705 — cell biology — Posted on 2017-10-13

1042 Thermal proteome profiling of breast cancer cells reveals proteasomal activation by CDK4/6 inhibitor palbociclib

Miettinen, T. P.; Peltier, J.; Hartlova, A.; Gierlinski, M.; Jansen, V. M.; Trost, M.; Bjorklund, M.

10.1101/202770 — cancer biology — Posted on 2017-10-13

1043 Extensive non-canonical phosphorylation in human cells revealed using strong-anion exchange-mediated phosphoproteomics

Hardman, G.; Perkins, S.; Ruan, Z.; Kannan, N.; Brownridge, P.; Byrne, D. P.; Eyers, P. A.; Jones, A. R.; Eyers, C. E.

10.1101/202820 — biochemistry — Posted on 2017-10-13

1044 An RNA Virome Associated To The Golden Orb-Weaver Spider Nephila clavipes

Debat, H. J.

10.1101/140814 — microbiology — Posted on 2017-10-13

1045 An Unexpectedly Complex Architecture for Skin Pigmentation in Africans

Martin, A. R.; Lin, M.; Granka, J. M.; Myrick, J. W.; Liu, X.; Sockell, A.; Atkinson, E. G.; Werely, C. J.; Möller, M.; Sandhu, M. S.; Kingsley, D. M.; Hoal, E. G.; Liu, X.; Daly, M. J.; Feldman, M. W.; Gignoux, C. R.; Bustamante, C. D.; Henn, B. M.

10.1101/200139 — genetics — Posted on 2017-10-13

1046 Haplotype sharing provides insights into fine-scale population history and disease in Finland

Martin, A. R.; Karczewski, K. J.; Kerminen, S.; Kurki, M.; Sarin, A.-P.; Artomov, M.; Eriksson, J. G.; Esko, T.; Genovese, G.; Havulinna, A. S.; Kaprio, J.; Konradi, A.; Koranyi, L.; Kostareva, A.; Männikkö, M.; Metspalu, A.; Perola, M.; Prasad, R. B.; Raitakari, O.; Rotar, O.; Salomaa, V.; Groop, L.; Palotie, A.; Neale, B. M.; Ripatti, S.; Pirinen, M.; Daly, M. J.

10.1101/200113 — genetics — Posted on 2017-10-13

1047 A taxogenomics approach uncovers a new genus in the phylum Placozoa

Eitel, M.; Francis, W.; Osigus, H.-J.; Krebs, S.; Vargas, S.; Blum, H.; Williams, G. A.; Schierwater, B.; Wörheide, G.

10.1101/202119 — evolutionary biology — Posted on 2017-10-13

1048 Fitting functional responses: Direct parameter estimation by simulating differential equations

Rosenbaum, B.; Rall, B. C.

10.1101/201632 — ecology — Posted on 2017-10-13

1049 A Deep Recurrent Neural Network Discovers Complex Biological Rules to Decipher RNA Protein-Coding Potential

Hill, S. T.; Kuintzle, R. C.; Teegarden, A.; Merrill, E.; Danaee, P.; Hendrix, D. A.

10.1101/200758 — bioinformatics — Posted on 2017-10-13

1050 History is written by the victors: the effect of the push of the past on the fossil record

Budd, G. E.; Mann, R. P.

10.1101/194753 — paleontology — Posted on 2017-10-13

1051 The eardrums move when the eyes move: A multisensory effect on the mechanics of hearing

Gruters, K. G.; Murphy, D. L. K.; Jenson, C. D.; Smith, D. W.; Shera, C. A.; Groh, J. M.

10.1101/156570 — neuroscience — Posted on 2017-10-13

1052 Characterization of a set of abdominal neuroendocrine cells that regulate stress physiology using colocalized diuretic peptides in Drosophila

Zandawala, M.; Marley, R.; Davies, S. A.; Nassel, D. R.

10.1101/164178 — neuroscience — Posted on 2017-10-13

1053 Evolution of exploitative interactions during diversification in Bacillus subtilis biofilms

Dragos, A.; Lakshmanan, N.; Martin, M.; Horvath, B.; Maroti, G.; Falcon Garcia, C.; Lieleg, O.; Kovacs, A. T.

10.1101/173476 — microbiology — Posted on 2017-10-13

1054 SPECTRE: a Suite of PhylogEnetiC Tools for Reticulate Evolution

Bastkowski, S.; Mapleson, D.; Spillner, A.; Wu, T.; Balvociute, M.; Moulton, V.

10.1101/169177 — bioinformatics — Posted on 2017-10-13

1055 Network perturbation analysis of gene transcriptional profiles reveals protein targets and mechanism of action of drugs and influenza A viral infection

Noh, H.; Shoemaker, J. E.; Gunawan, R.

10.1101/175364 — bioinformatics — Posted on 2017-10-13

1056 MS Western, a method of multiplexed absolute protein quantification is a practical alternative to western blotting

Kumar, M.; Joseph, S. R.; Augsburg, M.; Bogdanova, A.; Drechsel, D.; Vastenhouw, N. L.; Buchholz, F.; Gentzel, M.; Shevchenko, A.

10.1101/156943 — biochemistry — Posted on 2017-10-13

1057 Contrasting maternal and paternal genetic variation of hunter-gatherer groups in Thailand

Kutanan, W.; Kampuansai, J.; Changmai, P.; Flegontov, P.; Schroeder, R.; Macholdt, E.; Huebner, A.; Kangwanpong, D.; Stoneking, M.

10.1101/201483 — genetics — Posted on 2017-10-13

1058 Evolutionary Rescue Over A Fitness Landscape

Anciaux, Y.; Chevin, L.-M.; Ronce, O.; Martin, G.

10.1101/135780 — evolutionary biology — Posted on 2017-10-13

1059 A mathematical and computational model of the calcium dynamics in Caenorhabditis elegans ASH sensory neuron

Mirzakhalili, E.; Epureanu, B.; Gourgou, E.

10.1101/201962 — neuroscience — Posted on 2017-10-12

1060 Efficient genome editing in primary cells and in vivo using viral-derived "Nanoblades" loaded with Cas9/sgRNA ribonucleoproteins

Mangeot, P. E.; Rissons, V.; Fusil, F.; Marnef, A.; Laurent, E.; Blin, J.; Mournetas, V.; Massourides, E.; Sohier, T. J. M.; Corbin, A.; Aube, F.; Pinset, C.; Schaeffer, L.; Legube, G.; Cosset, F.-L.; Verhoeyen, E.; Ohlmann, T.; Ricci, E. P.

10.1101/202010 — cell biology — Posted on 2017-10-12

1061 Evaluation of variability in human protein X-ray structures

Anzai, R.; Asami, Y.; Inoue, W.; Ueno, H.; Yamada, K.; Okada, T.

10.1101/202028 — biophysics — Posted on 2017-10-12

1062 Sequence, Structure and Context Preferences of Human RNA Binding Proteins

Dominguez, D.; Freese, P.; Alexis, M. S.; Su, A.; Hochman, M.; Palden, T.; Bazile, C.; Lambert, N. J.; Van Nostrand, E. L.; Pratt, G. A.; Yeo, G. W.; Graveley, B.; Burge, C. B.

10.1101/201996 — biochemistry — Posted on 2017-10-12

1063 Stochastic microbial community assembly decreases biogeochemical function

Graham, E. B.; Stegen, J. C.

10.1101/183897 — ecology — Posted on 2017-10-12

1064 ECM cross-linking regulates invadopodia dynamics

Esmaeili Pourfarhangi, K.; Bergman, A.; Gligorijevic, B.

10.1101/198580 — cancer biology — Posted on 2017-10-12

1065 Functional pathways for metabolic network-based data analysis: the MetPath algorithm

Mattei, G.; Zielinski, D. C.; Gan, Z.; Ramazzotti, M.; Palsson, B. O.

10.1101/202226 — systems biology — Posted on 2017-10-12

1066 Spatially organizing biochemistry: choosing a strategy to translate synthetic biology to the factory

Jakobson, C.; Tullman-Ercek, D.; Mangan, N.

10.1101/202259 — synthetic biology — Posted on 2017-10-12

1067 A cell-free synthetic biochemistry platform for raspberry ketone production

Moore, S. J.; Tosi, T.; Hleba, Y. B.; Bell, D.; Polizzi, K.; Freemont, P.

10.1101/202341 — synthetic biology — Posted on 2017-10-12

1068 Alpha Oscillatory Activity Prior to Encoding Modulates Memory Consolidation during Wake but not Sleep

Cross, Z. R.; Santamaria, A.; Corcoran, A. W.; Alday, P. M.; Coussens, S.; Kohler, M. J.

10.1101/202176 — neuroscience — Posted on 2017-10-12

1069 Across-subjects classification of stimulus modality from human MEG high frequency activity

Westner, B. U.; Dalal, S. S.; Hanslmayr, S.; Staudigl, T.

10.1101/202424 — neuroscience — Posted on 2017-10-12

1070 Phase-tuned neuronal firing encodes human contextual representations for navigational goals

Watrous, A. J.; Miller, J.; Qasim, S. E.; Fried, I.; Jacobs, J.

10.1101/202374 — neuroscience — Posted on 2017-10-12

1071 The language of music: Common neural codes for structured sequences in music and natural language

Chiang, J. N.; Rosenberg, M. H.; Bufford, C. A.; Stephens, D.; Lysy, A.; Monti, M. M.

10.1101/202382 — neuroscience — Posted on 2017-10-12

1072 Theta phase coordinated memory reactivation reoccurs in a slow-oscillatory rhythm during NREM sleep

Schreiner, T.; Doeller, C. F.; Jensen, O.; Rasch, B.; Staudigl, T.

10.1101/202143 — neuroscience — Posted on 2017-10-12

1073 Potential for Methanosarcina to contribute to uranium reduction during acetate-promoted groundwater bioremediation

Holmes, D. E.; Orelana, R.; Giloteaux, L.; Wang, L.-Y.; Shrestha, P. M.; Williams, K.; Lovley, D. R.; Rotaru, A.-E.

10.1101/202242 — microbiology — Posted on 2017-10-12

1074 Two SecA/SecY Systems with Distinct Roles in the Ecological Adaptations of Bacteria

Jiang, X.; Fares, M. A.

10.1101/202358 — microbiology — Posted on 2017-10-12

1075 The Effect of Targeted Vaccination Against Mycobacterium Avium ssp. Paratuberculosis (MAP) in a Multiple Sclerosis Mouse Model: Implications for Causation

Warmoth, M.

10.1101/202275 — immunology — Posted on 2017-10-12

1076 A taxogenomics approach uncovers a new genus in the phylum Placozoa

Eitel, M.; Francis, W.; Osigus, H.-J.; Krebs, S.; Vargas, S.; Blum, H.; Williams, G. A.; Schierwater, B.; Wörheide, G.

10.1101/202119 — evolutionary biology — Posted on 2017-10-12

1077 Control of Mast Cell Regulated Exocytosis by Munc13 Proteins

Rodarte, E. M.; Ramos, M. A.; Davalos, A. J.; Moreira, D. C.; Moreno, D. S.; Cardenas, E. I.; Rodarte, A. I.; Petrova, Y.; Molina, S.; Rendon, L. E.; Sanchez, E.; Breaux, K.; Tortoriello, A.; Manllo, J.; Gonzalez, E. A.; Tuvim, M. J.; Dickey, B. F.; Burns, A. R.; Heidelberger, R.; Adachi, R.

10.1101/202473 — cell biology — Posted on 2017-10-12

1078 Identification of potential blood-derived extracellular vesicles biomarkers to diagnose and predict distant metastases in ER+ breast cancer patients

Hamidi, Z.; Tejero, E.; Schmidt, R.; Tucker, R.; Pedro, A.

10.1101/202291 — cancer biology — Posted on 2017-10-12

1079 Authentic Enzyme Intermediates Captured "on-the-fly" by Mix-and-Inject Serial Crystallography

Olmos, J.; Pandey, S.; Martin-Garcia, J. M.; Calvey, G.; Katz, A.; Knoska, J.; Kupitz, C.; Hunter, M. S.; Liang, M.; Oberthuer, D.; Yefanov, O.; Wiedorn, M.; Heymann, M.; Holl, M.; Pande, K.; Barty, A.; Miller, M. D.; Stern, S.; Roy-Chowdhury, S.; Coe, J. D.; Nagaratnam, N.; Zook, J.; Norwood, T.; Poudyal, I.; Xu, D.; Koglin, J.; Seaberg, M.; Zhao, Y.; Bajt, S.; Grant, T.; Mariani, V.; Nelson, G.; Subramanian, G.; Bae, E.; Fromme, R.; Fung, R.; Schwander, P.; Frank, M.; White, T.; Weierstall, U.; Zatsepin, N.; Spence, J.; Fromme, P.; Chapman, H. N.; Pollack, L.; Tremblay, L.; Ourmazd, A.; Phil

10.1101/202432 — biophysics — Posted on 2017-10-12

1080 ATP-induced asymmetric pre-protein folding: a potential driver of protein translocation?

Corey, R. A.; Allen, W. J.; Collinson, I.

10.1101/202150 — biophysics — Posted on 2017-10-12

1081 Identification and functional analyses of cardiolipin binding sites on the bacterial Sec translocase

Corey, R. A.; Pyle, E.; Allen, W. J.; Miroux, B.; Arechaga, I.; Politis, A.; Collinson, I.

10.1101/202184 — biophysics — Posted on 2017-10-12

1082 Revising transcriptome assemblies with phylogenetic information in Agalma1.0

Guang, A.; Howison, M.; Zapata, F.; Lawrence, C. E.; Dunn, C.

10.1101/202416 — bioinformatics — Posted on 2017-10-12

1083 The optimization of mRNA expression level by its intrinsic properties -- insights from codon usage pattern and structural stability of mRNA

Victor, M. P.; Acharya, D.; Begum, T.; Ghosh, T. C.

10.1101/202200 — bioinformatics — Posted on 2017-10-12

1084 Identifying accurate metagenome and amplicon software via a meta-analysis of benchmarking studies

Gardner, P. P.; Watson, R. J.; Morgan, X. C.; Draper, J. L.; Finn, R. D.; Morales, S. E.; Stott, M. B.

10.1101/202077 — bioinformatics — Posted on 2017-10-12

1085 Restoration longevity among geriatric and adult special needs patients

Caplan, D. J.; Li, Y.; Wang, W.; Kang, S.; Marchini, L.; Cowen, H.; Yan, J.

10.1101/202069 — bioengineering — Posted on 2017-10-12

1086 Anxiety-like but not despair-like behaviors are further aggravated by chronic mild stress in the early stages of APPswe/PS1dE9 transgenic mice

Gao, J.-Y.; Chen, Y.; Su, D.-Y.; Marshall, C.; Xiao, M.

10.1101/202283 — animal behavior and cognition — Posted on 2017-10-12

1087 ECM cross-linking regulates invadopodia dynamics

Esmaeili Pourfarhangi, K.; Bergman, A.; Gligorijevic, B.

10.1101/198580 — cancer biology — Posted on 2017-10-12

1088 Interplay between antibiotic efficacy and drug-induced lysis underlies enhanced biofilm formation at subinhibitory drug concentrations

Yu, W.; Hallinen, K.; Wood, K.

10.1101/163733 — microbiology — Posted on 2017-10-12

1089 Evidence of population specific selection inferred from 289 genome sequences of Nilo-Saharan and Niger-Congo linguistic groups in Africa

Mulindwa, J.; Noyes, H. A.; Ilboudo, H.; Nyangiri, O.; Koffi, M.; Mumba, D.; Simo, G.; Enyaru, J.; Chisi, J.; Simuunza, M.; Alibu, V. P.; Jammoneau, V.; MacLeod, A.; Bucheton, B.; Hertz-Fowler, C.; Sidibe, I.; Matovu, E.; The TrypanoGEN Consortium, ; The H3Africa Consortium,

10.1101/186700 — genomics — Posted on 2017-10-12

1090 An analytic approach for interpretable predictive models in high dimensional data, in the presence of interactions with exposures

Bhatnagar, S. R.; Yang, Y.; Khundrakpam, B. S.; Evans, A.; Blanchette, M.; Bouchard, L.; Greenwood, C. M. T.

10.1101/102475 — genomics — Posted on 2017-10-12

1091 Attributing the variability in direction and magnitude of local-scale marine biodiversity change to human activities

Dunic, J. C.; Elahi, R.; Hensel, M. J. S.; Kearns, P. J.; O'Connor, M. I.; Acuna, D.; Honig, A.; Wilson, A. R.; Byrnes, J. E. K.

10.1101/162362 — ecology — Posted on 2017-10-12

1092 LIN28 selectively modulates a subclass of let-7 microRNAs

Ustianenko, D.; Chiu, H.-S.; Weyn-Vanhentenryck, S. M.; Sumazin, P.; Zhang, C.

10.1101/202036 — molecular biology — Posted on 2017-10-12

1093 Detection of functional protein domains by unbiased genome-wide forward genetic screening

Herzog, M.; Puddu, F.; Coates, J.; Geisler, N. J.; Forment, J. V.; Jackson, S. P.

10.1101/198416 — molecular biology — Posted on 2017-10-12

1094 Single cell transcriptional profiling reveals cellular diversity, communication, and sexual dimorphism in the mouse heart

Skelly, D. A.; Squiers, G. T.; McLellan, M. A.; Bolisetty, M. T.; Robson, P.; Rosenthal, N.; Pinto, A. R.

10.1101/201970 — cell biology — Posted on 2017-10-12

1095 Molecular structure of human KATP in complex with ATP and ADP

Lee, K.; Chen, J.; MacKinnon, R.

10.1101/199034 — biophysics — Posted on 2017-10-12

1096 Ki-67 and condensins support the integrity of mitotic chromosomes through distinct mechanisms

Takagi, M.; Ono, T.; Natsume, T.; Sakamoto, C.; Nakao, M.; Saitoh, N.; Kanemaki, M. T.; Hirano, T.; Imamoto, N.

10.1101/202390 — cell biology — Posted on 2017-10-12

1097 Acetylcholine reconfigures hippocampal circuits to enable rapid formation of overlapping memory ensembles

Prince, L. Y.; Tsaneva-Atanasova, K.; Clopath, C.; Mellor, J. R.

10.1101/201699 — neuroscience — Posted on 2017-10-12

1098 Consistent Reanalysis of Genome-wide Imprinting Studies in Plants Using Generalized Linear Models Increases Concordance across Datasets

Wyder, S.; Raissig, M. T.; Grossniklaus, U.

10.1101/180745 — plant biology — Posted on 2017-10-12

1099 Experience-dependent modulation of behavioral features in sensory navigation of nematodes and bats revealed by machine learning

Yamazaki, S. J.; Ikejiri, Y.; Hiramatsu, F.; Fujita, K.; Tanimoto, Y.; Yamazoe-Umemoto, A.; Yamada, Y.; Hashimoto, K.; Hiryu, S.; Maekawa, T.; Kimura, K. D.

10.1101/198879 — neuroscience — Posted on 2017-10-12

1100 Comparative transcriptomics provides insight into the evolution of cold response in Pooideae

Groenvold, L.; Schubert, M.; Sandve, S. R.; Fjellheim, S.; Hvidsten, T. R.

10.1101/151431 — evolutionary biology — Posted on 2017-10-12

1101 Insights into cerebral haemodynamics and oxygenation utilising in vivo mural cell imaging and mathematical modelling

Sweeney, P.; Walker-Samuel, S.; Shipley, R. J.

10.1101/195503 — biophysics — Posted on 2017-10-12

1102 A simple and powerful analysis of lateral subdiffusion using single particle tracking

Renner, M.; WANG, L.; LEVI, S.; HENNEKINE, L.; TRILLER, A.

10.1101/197152 — biophysics — Posted on 2017-10-12

1103 Salicylic acid perturbs sRNA-gibberellin regulatory network in immune response of potato to Potato virus Y infection

Kriznik, M.; Petek, M.; Dobnik, D.; Ramsak, Z.; Baebler, S.; Pollmann, S.; Kreuze, J.; Zel, J.; Gruden, K.

10.1101/130757 — plant biology — Posted on 2017-10-12

1104 Transformation From Independent To Integrative Coding Of Multi-Object Arrangements In Human Visual Cortex

Kaiser, D.; Peelen, M. V.

10.1101/117432 — neuroscience — Posted on 2017-10-12

1105 Can Ebola Virus evolve to be less virulent in humans?

Sofonea, M. T.; Aldakak, L.; Boullosa, L. F. V. V.; Alizon, S.

10.1101/108589 — evolutionary biology — Posted on 2017-10-12

1106 Comparing three types of dietary samples for prey DNA decay in an insect generalist predator

Kamenova, S.; Mayer, R.; Rubbmark, O. R.; Coissac, E.; Plantegenest, M.; Traugott, M.

10.1101/098806 — ecology — Posted on 2017-10-12

1107 GROOLS: reactive graph reasoning for genome annotation through biological processes

Mercier, J.; Josso, A.; Medigue, C.; Vallenet, D.

10.1101/117994 — bioinformatics — Posted on 2017-10-12

1108 Antenatal Screening for Group B Streptococcus in the Setting of Preterm Premature Rupture of Membranes: Empiric versus Culture-based Prophylaxis

Mithal, L. B.; Shah, N.; Romanova, A.; Miller, E. S.

10.1101/201400 — epidemiology — Posted on 2017-10-12

1109 Memory Guides the Comprehension of Event Changes for Older and Younger Adults

Wahlheim, C.; Zacks, J.

10.1101/201939 — animal behavior and cognition — Posted on 2017-10-12

1110 Leaf rolling in maize crops: from leaf scoring to canopy level measurements for phenotyping

Baret, F.; Madec, S.; Irfan, K.; Lopez, J.; Comar, A.; Hemmerle, M.; Dutartre-Cohen, D.; Praud, S.; Tixier, M.-H.

10.1101/201665 — plant biology — Posted on 2017-10-11

1111 Molecules of map plasticity in the somatosensory cortex

Kole, K.; Scheenen, W.; Tiesinga, P.; Celikel, T.

10.1101/201293 — neuroscience — Posted on 2017-10-11

1112 Neural code uses self-information principle to organize the brain’s universal cell-assembly coding

Li, M.; Xie, K.; Kuang, H.; Liu, J.; Wang, D.; Fox, G. E.; Shi, Z.; Chen, L.; Zhao, F.; Mao, Y.; Tsien, J.

10.1101/201301 — neuroscience — Posted on 2017-10-11

1113 Acetylcholine reconfigures hippocampal circuits to enable rapid formation of overlapping memory ensembles

Prince, L. Y.; Tsaneva-Atanasova, K.; Clopath, C.; Mellor, J. R.

10.1101/201699 — neuroscience — Posted on 2017-10-11

1114 Long-range inputs and H-current regulate different modes of operation in a multiscale model of mouse M1 microcircuits

Dura-Bernal, S.; Neymotin, S. A.; Suter, B. A.; Shepherd, G. M.; Lytton, W. W.

10.1101/201707 — neuroscience — Posted on 2017-10-11

1115 Hemispheric lateralization of Heschl’s gyrus and amygdala subdivisions are involved in differentiating happy and sad acoustic emotion

Manno, F. A. M.; Fernandez-Ruiz, J.; Barrios, F. A.

10.1101/201954 — neuroscience — Posted on 2017-10-11

1116 Electrophysiological Signature Reveals Laminar Structure of the Porcine Hippocampus

Ulyanova, A. V.; Koch, P. F.; Grovola, M. R.; Browne, K. D.; Russo, R. J.; Adam, C. D.; Smith, D. H.; Chen, H. I.; Johnson, V. E.; Cullen, D. K.; Wolf, J. A.

10.1101/201285 — neuroscience — Posted on 2017-10-11

1117 Imbalanced amplification: A mechanism of amplification and suppression from local imbalance of excitation and inhibition in cortical circuits

Ebsch, C.; Rosenbaum, R.

10.1101/201269 — neuroscience — Posted on 2017-10-11

1118 A multi-modal approach to decomposing standard neuropsychological test performance: Symbol Search

Langer, N.; Ho, E. J.; Pedroni, A.; Alexander, L. M.; Marcelle, E. T.; Schuster, K.; Milham, M. P.; Kelly, S. P.

10.1101/200998 — neuroscience — Posted on 2017-10-11

1119 Transcriptomic Dynamics of a non-coding trinucleotide repeat expansion disorder SCA12 in iPSC derived neuronal cells: signatures of interferon induced response

Kumar, D.; Dhapola, P.; Hussain, A.; Kutum, R.; Srivastava, A. K.; Mukerji, M.; Mukherjee, O.; Faruq, M.

10.1101/201137 — molecular biology — Posted on 2017-10-11

1120 Protein-protein interactions with fructose-1-kinase alter function of the central Escherichia coli transcription regulator, Cra

Singh, D.; Fairlamb, M. S.; Harrison, K. S.; Weeramange, C.; Meinhardt, S.; Tungtur, S.; Rau, B. F.; Hefty, P. S.; Fenton, A. W.; Swint-Kruse, L.

10.1101/201277 — microbiology — Posted on 2017-10-11

1121 N6-methyladenosine modification and the YTHDF2 reader protein play cell type specific roles in lytic viral gene expression during Kaposi’s sarcoma-associated herpesvirus infection

Hesser, C.; Karijolich, J.; Dominissini, D.; He, C.; Glaunsinger, B. A.

10.1101/201475 — microbiology — Posted on 2017-10-11

1122 Meta-analysis of massive parallel reporter assay enables functional regulatory elements prediction

Kreimer, A.; Yan, Z.; Ahituv, N.; Yosef, N.

10.1101/202002 — genomics — Posted on 2017-10-11

1123 Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome

10.1101/201731 — genomics — Posted on 2017-10-11

1124 Ancestral perinatal obesogen exposure results in a transgenerational thrifty phenotype in mice

Chamorro-Garcia, R.; Diaz-Castillo, C.; Shoucri, B. M.; Kaech, H.; Leavitt, R.; Shioda, T.; Blumberg, B.

10.1101/201384 — developmental biology — Posted on 2017-10-11

1125 The Drosophila Eukaryotic Initiation Factor eIF6 affects development by regulating apoptosis via the ecdysone pathway

Russo, A.; Gatti, G.; Alfieri, R.; Pesce, E.; Soanes, K.; Ricciardi, S.; Cheroni, C.; Vaccari, T.; Biffo, S.; Calamita, P.

10.1101/201558 — developmental biology — Posted on 2017-10-11

1126 Angiogenesis inhibiting capacity of Basella rubra and Syszygium cumini fruit extracts using chorioallantoic membrane assay

Medina, M. N.; Galang, H.; Castillo, P.

10.1101/201566 — developmental biology — Posted on 2017-10-11

1127 A Bioinformatics Pipeline for Whole Exome Sequencing: Overview of the Processing and Steps from Raw Data to Downstream Analysis

Meena, N.; Mathur, P.; Medicherla, K. M.; Suravajhala, P.

10.1101/201145 — bioinformatics — Posted on 2017-10-11

1128 GEMBS: high through-put processing pipeline for DNA methylation data from Whole Genome Bisulfite Sequencing (WGBS)

Merkel, A.; Fernandez-Callejo, M.; Casals, E.; Marco-Sola, S.; Schuyler, R.; Heath, S. C.

10.1101/201988 — bioinformatics — Posted on 2017-10-11

1129 Tonic and transient oscillatory brain activity during acute exercise

Ciria, L. F.; Luque-Casado, A.; Sanabria, D.; Ivanov, P. C.; Holgado, D.; Perakakis, P.

10.1101/201749 — neuroscience — Posted on 2017-10-11

1130 Continuous interdomain orientation distributions reveal components of binding thermodynamics

Qi, Y.; Martin, J. W.; Barb, A. W.; Thelot, F.; Yan, A.; Donald, B. R.; Oas, T. G.

10.1101/200238 — biophysics — Posted on 2017-10-11

1131 An automated barcode tracking system for behavioural studies in birds

Alarcon-Nieto, G.; Graving, J.; Klarevas-Irby, J. A.; Maldonado-Chaparro, A.; Mueller, I.; Farine, D.

10.1101/201590 — animal behavior and cognition — Posted on 2017-10-11

1132 Placozoans are eumetazoans related to Cnidaria

Laumer, C. E.; Gruber-Vodicka, H.; Hadfield, M. G.; Pearse, V. B.; Riesgo, A.; Marioni, J. C.; Giribet, G.

10.1101/200972 — zoology — Posted on 2017-10-11

1133 Peer-Led Team Learning Improves Minority Student Retention in STEM Majors

Sloane, J.; Snyder, J. J.; Wiles, J. R.

10.1101/200071 — scientific communication and education — Posted on 2017-10-11

1134 Sexual lineage specific DNA methylation regulates Arabidopsis meiosis

Walker, J.; Gao, H.; Zhang, J.; Aldridge, B.; Vickers, M.; Higgins, J. D.; Feng, X.

10.1101/201798 — plant biology — Posted on 2017-10-11

1135 Deep convolutional models improve predictions of macaque V1 responses to natural images

Cadena, S. A.; Denfield, G. H.; Walker, E. Y.; Gatys, L. A.; Tolias, A. S.; Bethge, M.; Ecker, A. S.

10.1101/201764 — neuroscience — Posted on 2017-10-11

1136 Geometric Classification of Brain Network Dynamics via Donic Derivative Discriminants

Singh, M. F.; Braver, T.; Ching, S.

10.1101/201905 — neuroscience — Posted on 2017-10-11

1137 The Opportunity Cost of Time Modulates Cognitive Effort

Otto, A. R.; Daw, N.

10.1101/201863 — neuroscience — Posted on 2017-10-11

1138 Temporal expectation modulates cortical dynamics of sensory memory

Wilsch, A.; Henry, M. J.; Herrmann, B.; Herrmann, C. S.; Obleser, J.

10.1101/201756 — neuroscience — Posted on 2017-10-11

1139 Predicting aging of brain metabolic topography using variational autoencoder

Choi, H.; Kang, H.; Lee, D. S.

10.1101/200865 — neuroscience — Posted on 2017-10-11

1140 Subject- and behavior-specific signatures extracted from fMRI data using whole-brain effective connectivity

Pallares, V.; Insabato, A.; Sanjuan, A.; Kuehn, S.; Mantini, D.; Deco, G.; Gilson, M.

10.1101/201624 — neuroscience — Posted on 2017-10-11

1141 Atypical functional connectivity in adolescents and adults with persistent and remitted ADHD

Michelini, G.; Jurgiel, J.; Bakolis, I.; Cheung, C. H.; Asherson, P.; Loo, S. K.; Kuntsi, J.; Mohammad-Rezazadeh, I.

10.1101/201772 — neuroscience — Posted on 2017-10-11

1142 Mutational analysis of the human Xbp1 translational arrest peptide and construction of arrest-enhanced variants

Schiller, N.; Magoulopoulou, A.; Cymer, F.; Von Heijne, G.

10.1101/201913 — molecular biology — Posted on 2017-10-11

1143 Moderate-Throughput Identification and Comparison of Campylobacter-Infecting Bacteriophages

Johnson, T. J.; Shank, J. M.; Patel, K. M.; Paredes, M. D.; Lee, E. D.; Mitchell, M. K.; Denes, T. G.; Johnson, J. G.

10.1101/201822 — microbiology — Posted on 2017-10-11

1144 A helicase-containing module defines a family of pCD630-like plasmids in Clostridium difficile

Smits, W. K.; Weese, J. S.; Roberts, A. P.; Harmanus, C.; Hornung, B.

10.1101/198473 — microbiology — Posted on 2017-10-11

1145 Systematic evaluation of statistical methods for identifying looping interactions in 5C data

Phillips-Cremins, J. E.; Gilgenast, T. G.

10.1101/201681 — genomics — Posted on 2017-10-11

1146 Persistent DNA-break potential near telomeres increases initiation of meiotic recombination on small chromosomes

Subramanian, V. V.; Markowitz, T. E.; Vale Silva, L. A.; San-Segundo, P.; Hollingsworth, N. M.; Hochwagen, A.

10.1101/201889 — genomics — Posted on 2017-10-11

1147 Cnidarian cell type diversity revealed by whole-organism single-cell RNA-seq analysis

Sebe-Pedros, A.; Chomsky, E.; Saudemont, B.; Mailhe, M.-P.; Pleisser, F.; Renno, J.; Loe-Mie, Y.; Lifshitz, A.; Mukamel, Z.; Schmutz, S.; Nouvault, S.; Spitz, F.; Tanay, A.; Marlow, H.

10.1101/201103 — genomics — Posted on 2017-10-11

1148 A critical comparison of technologies for a plant genome sequencing project

Paajanen, P.; Kettleborough, G.; Lopez-Girona, E.; Giolai, M.; Heavens, D.; Baker, D.; Lister, A.; Wilde, G.; Hein, I.; Macaulay, I.; Bryan, G. J.; Clark, M. D.

10.1101/201830 — genomics — Posted on 2017-10-11

1149 Genetic analysis of over one million people identifies 535 novel loci for blood pressure.

Evangelou, E.; Warren, H. R.; Mosen-Ansorena, D.; Mifsud, B.; Pazoki, R.; Gao, H.; Ntritsos, G.; Dimou, N.; Cabrera, C. P.; Karaman, I.; Ng, F. L.; Evangelou, M.; Witkowska, K.; Tzanis, E.; Hellwege, J. N.; Giri, A.; Velez Edwards, D. R.; Sun, Y. V.; Cho, K.; Gaziano, J. M.; Wilson, P. W. F.; Tsao, P. S.; Kovesdy, C. P.; Esko, T.; Magi, R.; Milani, L.; Almgren, P.; Boutin, T.; Debette, S.; Ding, J.; Giulianini, F.; Holliday, E. G.; Jackson, A. U.; Li-Gao, R.; Lin, W.-Y.; Luan, J.; Mangino, M.; Oldmeadow, C.; Prins, B.; Qian, Y.; Sargurupremraj, M.; Shah, N.; Surendran, P.; Theriault, S.; Verwe

10.1101/198234 — genetics — Posted on 2017-10-11

1150 Identification, Isolation, and Characterization of Human LGR5-positive Colon Adenoma Cells

Dame, M. K.; Attili, D.; McClintock, S. D.; Dedhia, P. H.; Ouilette, P.; Hardt, O.; Chin, A. M.; Xue, X.; Laliberte, J.; Katz, E. L.; Newsome, G. M.; Hill, D.; Miller, A.; Tsai, Y.-H.; Agorku, D.; Altheim, C. H.; Bosio, A.; Simon, B.; Samuelson, L. C.; Stoerker, J. A.; Appelman, H. D.; Varani, J.; Wicha, M. S.; Brenner, D. E.; Shah, Y. M.; Spence, J. R.; Colacino, J. A.

10.1101/118034 — cancer biology — Posted on 2017-10-11

1151 Evolving better RNAfold C source code

Langdon, W. B.

10.1101/201640 — bioinformatics — Posted on 2017-10-11

1152 An alignment method for nucleic acid sequences against annotated genomes

Deforche, K.

10.1101/200394 — bioinformatics — Posted on 2017-10-11

1153 MatchMiner: An open source computational platform for real-time matching of cancer patients to precision medicine clinical trials using genomic and clinical criteria

Lindsay, J.; Del Vecchio Fitz, C.; Zwiesler, Z.; Kumari, P.; Van Der Veen, B.; Monrose, T.; Mazor, T.; Barry, S.; Albayrak, A.; Tung, M.; Do, K.; Beardslee, B.; Shapiro, G.; Methot, J.; Sholl, L.; MacConaill, L. E.; Lindeman, N.; Johnson, B.; Rollins, B.; Sander, C.; Hassett, M.; Cerami, E.

10.1101/199489 — bioinformatics — Posted on 2017-10-11

1154 Intraclass correlation: improved modeling approaches and applications for neuroimaging

Chen, G.; Taylor, P. A.; Haller, S. P.; Kircanski, K.; Stoddard, J.; Pine, D. S.; Leibenluft, E.; Brotman, M. A.; Cox, R. W.

10.1101/164327 — neuroscience — Posted on 2017-10-11

1155 Algorithmic complexity of EEG as a prognosis biomarker of neurodegeneration in idiopathic rapid eye movement behavior disorder (RBD)

Ruffini, G.; Ibanez, D.; Kroupi, E.; Gagnon, J.-F.; Montplaisir, J.; Postuma, R. B.; Castellano, M.; Soria-Frisch, A.

10.1101/200543 — neuroscience — Posted on 2017-10-11

1156 Parental allele-specific genome architecture and transcription during the cell cycle

Chen, H.; Liu, S.; Seaman, L.; Najarian, C.; Wu, W.; Ljungman, M.; Higgins, G.; Hero, A.; Wicha, M.; Rajapakse, I.

10.1101/201715 — genomics — Posted on 2017-10-11

1157 Collateral sensitivity is contingent on the repeatability of evolution

Nichol, D.; Rutter, J.; Bryant, C.; Jeavons, P.; Anderson, A.; Bonomo, R.; Scott, J.

10.1101/185892 — evolutionary biology — Posted on 2017-10-11

1158 Asymmetric migration decreases stability but increases resilience in a heterogeneous metacommunity

Limdi, A.; Perez-Escudero, A.; Li, A.; Gore, J.

10.1101/201723 — ecology — Posted on 2017-10-11

1159 Novel approach to quantitative spatial gene expression uncovers cryptic evolution in the developing Drosophila eye

Ali, S.; Signor, S.; Kozlov, K.; Nuzhdin, S.

10.1101/175711 — developmental biology — Posted on 2017-10-11

1160 Bimodal Spindle Orientation Drives Tissue Regularity in a Proliferating Epithelium

Finegan, T. M.; Na, D.; Skeeters, A. V.; Dawney, N. S.; Oakes, P. W.; Fletcher, A. G.; Bergstralh, D. T.

10.1101/178517 — developmental biology — Posted on 2017-10-11

1161 Optimal Therapy Scheduling Based on a Pair of Collaterally Sensitive Drugs

Yoon, N.; Vander Velde, R.; Marusyk, A.; Scott, J.

10.1101/196824 — cancer biology — Posted on 2017-10-11

1162 Methods in Description and Validation of Local Metagenetic Microbial Communities

Molik, D. C.; Pfrender, M.; Emrich, S.

10.1101/198614 — bioinformatics — Posted on 2017-10-11

1163 Practical computational reproducibility in the life sciences

Grüning, B.; Chilton, J.; Köster, J.; Dale, R.; Goecks, J.; Backofen, R.; Nekrutenko, A.; Taylor, J.

10.1101/200683 — bioinformatics — Posted on 2017-10-11

1164 The converse effects of speed and gravity on the energetics of walking and running

Hasaneini, S. J.; Schroeder, R. T.; Bertram, J. E.; Ruina, A.

10.1101/201319 — physiology — Posted on 2017-10-11

1165 Accurate design of translational output by a neural network model of ribosome distribution

Tunney, R. J.; McGlincy, N. J.; Graham, M. E.; Naddaf, N.; Pachter, L.; Lareau, L.

10.1101/201517 — genomics — Posted on 2017-10-11

1166 Identification and characterization of Gypsophila paniculata color morphs in Sleeping Bear Dunes National Lakeshore, MI, USA.

Yang, M. L.; Rice, E.; Leimbach-Mas, H.; Partridge, C. G.

10.1101/201350 — plant biology — Posted on 2017-10-11

1167 Actin and Src-family kinases regulate nuclear YAP1 and its export

Ege, N.; Dowbaj, A. M.; Jiang, M.; Howell, M.; Jenkins, R. P.; Sahai, E.

10.1101/201004 — molecular biology — Posted on 2017-10-11

1168 IFITM proteins inhibit HIV-1 protein synthesis

Lee, W. Y.; Liang, C.; Sloan, R.

10.1101/201525 — microbiology — Posted on 2017-10-11

1169 Comprehensive skin microbiome analysis reveals the uniqueness of human-associated microbial communities among the class Mammalia

Ross, A. A.; Muller, K.; Weese, J. S.; Neufeld, J.

10.1101/201434 — microbiology — Posted on 2017-10-11

1170 Tandem repeats contribute to coding sequence variation in bumblebees (Hymenoptera: Apidae)

Zhao, X.; Su, L.; Schaack, S.; Sun, C.

10.1101/201459 — genomics — Posted on 2017-10-11

1171 Dissecting the basis of novel trait evolution in a radiation with widespread phylogenetic discordance

Wu, M.; Kostyun, J. L.; Hahn, M. W.; Moyle, L.

10.1101/201376 — evolutionary biology — Posted on 2017-10-11

1172 Gene duplicates cause hybrid lethality between sympatric species of Mimulus

Zuellig, M.; Sweigart, A. L.

10.1101/201392 — evolutionary biology — Posted on 2017-10-11

1173 Stable centrosomal roots disentangle to allow interphase centriole independence

Mahen, R.

10.1101/199166 — cell biology — Posted on 2017-10-11

1174 InfoTrim: A DNA Read Quality Trimmer Using Entropy

Porter, J.; Zhang, L.

10.1101/201442 — bioinformatics — Posted on 2017-10-11

1175 The relative fitness of drug resistant Mycobacterium tuberculosis: a modelling study of household transmission in Lima, Peru

Knight, G. M.; Zimic, M.; Funk, S.; Gilman, R. H.; Friedland, J. S.; Grandjean, L.

10.1101/195313 — epidemiology — Posted on 2017-10-11

1176 Linking nitrogen load to the structure and function of wetland soil and rhizosphere microbial communities

Hester, E. R.; Harpenslager, S. F.; van Diggelen, J. M. H.; Lamers, L. L.; Jetten, M. S. M.; Luke, C.; Lucker, S.; Welte, C. U.

10.1101/197855 — microbiology — Posted on 2017-10-11

1177 A unique, spliced varicella-zoster virus latency transcript represses expression of the viral transactivator gene 61

Depledge, D. P.; Ouwendijk, W. J. D.; Sadaoka, T.; Braspenning, S. E.; Mori, Y.; Cohrs, R.; Verjans, G.; Breuer, J.

10.1101/174797 — microbiology — Posted on 2017-10-11

1178 Obtaining 3D Super-resolution Information from 2D Super-resolution Images through a 2D-to-3D Transformation Algorithm

Ruba, A.; Kelich, J.; Luo, W.; Yang, W.

10.1101/188060 — biophysics — Posted on 2017-10-11

1179 Gene set enrichment analysis using RNA-seq-based condition-specific metabolic networks

Tran, V. D. T.; Moretti, S.; Coste, A. T.; Amorim-Vaz, S.; Sanglard, D.; Pagni, M.

10.1101/200964 — systems biology — Posted on 2017-10-11

1180 Porcupine: a visual pipeline tool for neuroimaging analysis

van Mourik, T.; Snoek, L.; Knapen, T.; Norris, D.

10.1101/187344 — neuroscience — Posted on 2017-10-11

1181 An ensemble code in medial prefrontal cortex links prior events to outcomes during learning

Maggi, S.; Peyrache, A.; Humphries, M.

10.1101/187948 — neuroscience — Posted on 2017-10-11

1182 Eavesdropping and crosstalk between quorum sensing peptide signals that regulate bacteriocin production in Streptococcus pneumoniae

Miller, E.; Kjos, M.; Abrudan, M.; Roberts, I. S.; Veening, J.-W.; Rozen, D.

10.1101/087247 — microbiology — Posted on 2017-10-11

1183 Horizontal Gene Transfer Can Help Maintain the Equilibrium of Microbial Communities

Fan, Y.; Xiao, Y.; Momeni, B.; Liu, Y.-Y.

10.1101/201426 — evolutionary biology — Posted on 2017-10-11

1184 Pneumococcal phenotype and interaction with nontypeable Haemophilus influenzae as determinants of otitis media progression

Lewnard, J. A.; Givon-Lavi, N.; Tähtinen, P. A.; Dagan, R.

10.1101/200733 — epidemiology — Posted on 2017-10-11

1185 The relative fitness of drug resistant Mycobacterium tuberculosis: a modelling study of household transmission in Lima, Peru

Knight, G. M.; Zimic, M.; Funk, S.; Filman, R. H.; Friedland, J. S.; Grandjean, L.

10.1101/195313 — epidemiology — Posted on 2017-10-11

1186 Dynamics and Control of Infections on Social Networks of Population Types

Williams, B. G.; Dye, C.

10.1101/200063 — epidemiology — Posted on 2017-10-11

1187 An agent-based model of the Foraging Ascomycete Hypothesis

Thomas, D. C.; Vandegrift, R.; Roy, B.

10.1101/197707 — ecology — Posted on 2017-10-11

1188 A cautionary tale on using tumour growth rate to predict survival

Mistry, H.

10.1101/109934 — cancer biology — Posted on 2017-10-11

1189 APRIL and BAFF increase breast cancer cell stemness

Pelekanou, V.; Notas, G.; Athanasouli, P.; Alexakis, K.; Kiagiadaki, F.; Peroulis, N.; Kalyvianaki, K.; Kampouri, E.; Polioudaki, H.; Theodoropoulos, P.; Tsapis, A.; Castanas, E.; Kampa, M.

10.1101/151902 — cancer biology — Posted on 2017-10-11

1190 Quantitative in vivo evaluation of the reverse β-oxidation pathway for fatty acid production in Saccharomyces cerevisiae

Teixeira, P. G.; Siewers, V.; Nielsen, J.

10.1101/201616 — bioengineering — Posted on 2017-10-11

1191 Habits without Values

Miller, K.; Shenhav, A.; Ludvig, E.

10.1101/067603 — animal behavior and cognition — Posted on 2017-10-11

1192 Heartfelt Face Perception via the Interoceptive Pathway - a MEG study

Kim, J.; Park, H.-d.; Kim, K. W.; Shin, D. W.; Lim, S.; Kwon, H.; Kim, M.-Y.; Kim, K.; Jeong, B.

10.1101/200980 — neuroscience — Posted on 2017-10-10

1193 Using phylogenomic data to explore the effects of relaxed clocks and calibration strategies on divergence time estimation: Primates as a test case

dos Reis, M.; Gunnell, G. F.; Barba-Montoya, J.; Wilkins, A.; Yang, Z.; Yoder, A.

10.1101/201327 — evolutionary biology — Posted on 2017-10-11

1194 Improving the visualisation, interpretation and analysis of two-sample summary data Mendelian randomization via the radial plot and radial regression

Bowden, J.; Spiller, W.; Del-Greco, F.; Sheehan, N.; Thompson, J.; Minelli, C.; Davey Smith, G.

10.1101/200378 — epidemiology — Posted on 2017-10-11

1195 Using the three dimensional shape of plant cells to predict probabilities of cell division orientation

Martinez, P.; Allsman, L.; Brakke, K. A.; Hoyt, C.; Hayes, J.; Rasmussen, C. G.

10.1101/199885 — plant biology — Posted on 2017-10-10

1196 Neural signatures of dynamic emotion constructs in the human brain

Grootswagers, T.; Kennedy, B. L.; Most, S. B.; Carlson, T. A.

10.1101/200873 — neuroscience — Posted on 2017-10-10

1197 Conspecific sperm precedence is reinforced but sexual selection weakened in sympatric populations of Drosophila

Castillo, D. M.; Moyle, L. C.

10.1101/071886 — evolutionary biology — Posted on 2017-10-10

1198 Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets

Samadian, S.; Bruce, J. P.; Pugh, T. J.

10.1101/119636 — bioinformatics — Posted on 2017-10-10

1199 A tutorial on Gaussian process regression: Modelling, exploring, and exploiting functions

Schulz, E.; Speekenbrink, M.; Krause, A.

10.1101/095190 — animal behavior and cognition — Posted on 2017-10-10

1200 Measurement of leaf day respiration using a new isotopic disequilibrium method compared with the Laisk method

Gong, X. Y.; Tcherkez, G.; Wenig, J.; Schaeufele, R.; Schnyder, H.

10.1101/201038 — plant biology — Posted on 2017-10-10

1201 Development of cross-orientation suppression and size tuning and the role of experience

Popovic, M.; Stacy, A. K.; Oettgen, C. E.; Kang, M.; Nanu, R.; Wise, D. L.; Fiser, J.; Van Hooser, S. D.

10.1101/201228 — neuroscience — Posted on 2017-10-10

1202 Neural Correlates of Motor Imagery, Action Observation, and Movement Execution: A Comparison Across Quantitative Meta-Analyses

Hardwick, R. M.; Caspers, S.; Eickhoff, S. B.; Swinnen, S. P.

10.1101/198432 — neuroscience — Posted on 2017-10-10

1203 Probabilistic data integration identifies reliable gametocyte-specific proteins and transcripts in malaria parasites

Meerstein-Kessel, L.; van der Lee, R.; Stone, W.; Lanke, K.; Baker, D. A.; Alano, P.; Silvestrini, F.; Janse, C. J.; Khan, S. M.; van de Vegte-Bolmer, M.; Graumans, W.; Siebelink-Stoter, R.; Kooij, T. W.; Marti, M.; Drakeley, C.; Campo, J. J.; van Dam, T. J.; Sauerwein, R.; Bousema, T.; Huynen, M. A.

10.1101/199356 — microbiology — Posted on 2017-10-10

1204 Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms

Costello, M.; Fleharty, M.; Abreu, J.; Farjoun, Y.; Ferriera, S.; Holmes, L.; Howd, T.; Mason, T.; Vicente, G.; Dasilva, M.; Brodeur, W.; DeSmet, T.; Dodge, S.; Lennon, N. J.; Gabriel, S.

10.1101/200790 — genomics — Posted on 2017-10-10

1205 Dilated Convolutions for Modeling Long-Distance Genomic Dependencies

Gupta, A.; Rush, A. M.

10.1101/200857 — genomics — Posted on 2017-10-10

1206 Alzheimer’s Genetic Risk Score linked to Incident Mild Behavioral Impairment

Andrews, S.; Ismail, Z.; Anstey, K. J.; Mortby, M.

10.1101/200840 — genetics — Posted on 2017-10-10

1207 Decoupled Maternal and Zygotic Genetic Effects Shape the Evolution of Development

Zakas, C.; Deutscher, J.; Kay, A.; Rockman, M.

10.1101/200774 — evolutionary biology — Posted on 2017-10-10

1208 Time-Consistent Reconciliation Maps and ForbiddenTime Travel

Nojgaard, N.; Geiss, M.; Stadler, P. F.; Merkle, D.; Wieseke, N.; Hellmuth, M.

10.1101/201053 — evolutionary biology — Posted on 2017-10-10

1209 Biopipe: A Lightweight System Enabling Comparison of Bioinformatics Tools and Workflows

Tithi, S. S.; Lee, J.; Zhang, L.; Li, S.; Meng, N.

10.1101/201186 — bioinformatics — Posted on 2017-10-10

1210 The response to selection in Glycoside Hydrolase Family 13 structures: A comparative quantitative genetics approach

Hleap, J. S.; Blouin, C.

10.1101/201251 — bioinformatics — Posted on 2017-10-10

1211 Algorithmic complexity of EEG as a prognosis biomarker of neurodegeneration in idiopathic rapid eye movement behavior disorder (RBD)

Ruffini, G.; Ibanez, D.; Kroupi, E.; Gagnon, J.-F.; Montplaisir, J.; Postuma, R. B.; Castellano, M.; Soria-Frisch, A.

10.1101/200543 — neuroscience — Posted on 2017-10-10

1212 Analysis of behavioral variables across domains and strains in zebrafish: Role of brain monoamines

Lima, M. G.; Herculano, A. M.; Maximino, C.

10.1101/055657 — neuroscience — Posted on 2017-10-10

1213 The Proteus mirabilis rffG gene is essential for swarm-associated cell elongation through an Rcs-mediated pathway

Little, K.; Tipping, M. J.; Gibbs, K. A.

10.1101/198622 — microbiology — Posted on 2017-10-10

1214 Adaptation in plant genomes: bigger is different

Mei, W.; Stetter, M. G.; Gates, D. J.; Stitzer, M. C.; Ross-Ibarra, J.

10.1101/196501 — evolutionary biology — Posted on 2017-10-10

1215 Force-dependent ligand sensing enables αVβ3 integrin to differentiate between fibronectin and high-affinity ligands

Bachmann, M.; Schäfer, M.; Weissenbruch, K.; Mykuliak, V.; Heiser, L.; Franz, C. M.; Hytönen, V.; Wehrle-Haller, B.; Bastmeyer, M.

10.1101/200493 — cell biology — Posted on 2017-10-10

1216 Touching proteins with virtual bare hands: how to visualize protein-drug complexes and their dynamics in virtual reality

Martins Ratamero, E.; Bellini, D.; Dowson, C.; Roemer, R. A.

10.1101/201152 — bioinformatics — Posted on 2017-10-10

1217 Enhancer Linking by Methylation/Expression Relationships with the R package ELMER version 2

Chedraoui Silva, T.; Coetzee, S. G.; Yao, L.; Hazelett, D. J.; Noushmehr, H.; Berman, B. P.

10.1101/148726 — bioinformatics — Posted on 2017-10-10

1218 Aqueous ethanol permeation across Sterlitech flat sheet aquaporin membranes

Lewis, J.; Alshami, A.

10.1101/200709 — bioengineering — Posted on 2017-10-10

1219 Adult Neurogenesis Conserves Hippocampal Learning Capacity

Alam, J.; Kitamura, T.; Saitoh, Y.; Ohkawa, N.; Kondo, T.; Inokuchi, K.

10.1101/200253 — neuroscience — Posted on 2017-10-10

1220 Population-scale organization of cerebellar granule neuron signaling during a visuomotor behavior

Sylvester, S. J. G.; Lee, M. M.; Ramirez, A.; Lim, S.; Goldman, M. S.; Aksay, E. R. F.

10.1101/200824 — neuroscience — Posted on 2017-10-10

1221 Systemic Markers of Adaptive and Innate Immunity Are Associated with COPD Severity and Spirometric Disease Progression

Halper-Stromberg, E.; Yun, J. H.; Parker, M. M.; Tal-Singer, R. M.; Gaggar, A.; Silverman, E. K.; Leach, S.; Bowler, R. P.; Castaldi, P. J.

10.1101/193920 — genomics — Posted on 2017-10-10

1222 Diverse laboratory colonies of Aedes aegypti harbor the same adult midgut bacterial microbiome

Dickson, L. B.; Ghozlane, A.; Volant, S.; Bouchier, C.; Ma, L.; Vega-Rua, A.; Dusfour, I.; Jiolle, D.; Paupy, C.; Mayanja, M. N.; Kohl, A.; Lutwama, J. J.; Duong, V.; Lambrechts, L.

10.1101/200659 — genetics — Posted on 2017-10-10

1223 Single-cell RNA-seq of mouse dopaminergic neurons informs candidate gene selection for sporadic Parkinson’s disease

Hook, P. W.; McClymont, S. A.; Cannon, G. H.; Law, W. D.; Morton, A. J.; Goff, L. A.; McCallion, A. S.

10.1101/148049 — genetics — Posted on 2017-10-10

1224 A common molecular logic determines embryonic stem cell self-renewal and reprogramming

Dunn, S.-J.; Li, M. A.; Carbognin, E.; Smith, A. G.; Martello, G.

10.1101/200501 — developmental biology — Posted on 2017-10-10

1225 WDR11-mediated Hedgehog signalling defects underlie a new ciliopathy related to Kallmann syndrome

Kim, Y.-J.; Osborn, D.; Lee, J.-Y.; Araki, M.; Araki, K.; Mohun, T.; Kansakoski, J. E. M.; Brandstack, N.; Kim, H.-T.; Miralles, F.; Kim, C.-H.; Brown, N. A.; Kim, H.-G.; Martinez-Barbera, J. P.; Ataliotis, P.; Raivio, T.; Layman, L. C.; Kim, S.-H.

10.1101/200154 — developmental biology — Posted on 2017-10-10

1226 Comprehensive characterization of pediatric AML reveals diverse fusion oncoproteins and age-specific mutational interactions

Bolouri, H.; Farrar, J. E.; Triche, T. J.; Ries, R. E.; Lim, E. L.; Alonzo, T. A.; Ma, Y.; Moore, R.; Mungall, A.; Marra, M. A.; Zhang, J.; Ma, X.; Liu, Y.; Liu, Y.; Guidry Auvil, J. M.; Davidsen, T. M.; Gesuwan, P.; Hermida, L. C.; Salhia, B.; Capone, S.; Ramsingh, G.; Zwaan, C. M.; Noort, S.; Piccolo, S.; Kolb, E. A.; Gamis, A. S.; Smith, M. A.; Gerhard, D. S.; Meshinchi, S.

10.1101/125609 — cancer biology — Posted on 2017-10-10

1227 Restoring p53 Function and Silencing REV3L Suppresses the Cancerous Metabolic Phenotype in Cisplatin Treated Human Non-Small Lung Carcinoma Cells

Kong, L.; Murata, M. M.; Digman, M. A.

10.1101/200816 — cancer biology — Posted on 2017-10-10

1228 Energetic costs, precision, and efficiency of a biological motor in cargo transport

Hwang, W.; Hyeon, C.

10.1101/200907 — biophysics — Posted on 2017-10-10

1229 Origins of fractional control in regulated cell death

Santos, L. C.; Vogel, R.; Chipuk, J. E.; Birtwistle, M. R.; Stolovitzky, G.; Meyer, P.

10.1101/201160 — systems biology — Posted on 2017-10-10

1230 Using the three dimensional shape of plant cells to predict probabilities of cell division orientation

Martinez, P.; Allsman, L.; Brakke, K. A.; Hoyt, C.; Rasmussen, C. G.

10.1101/199885 — plant biology — Posted on 2017-10-10

1231 Characterization of Thylakoid Division Using Chloroplast Dividing Mutants in Arabidopsis

Ho, J.; Kwan, W.; Li, V.; Theg, S.

10.1101/200667 — plant biology — Posted on 2017-10-10

1232 Neocortical microdissection at columnar and laminar resolution for molecular interrogation

Kole, K.; Celikel, T.

10.1101/200931 — neuroscience — Posted on 2017-10-10

1233 Neural signatures of dynamic emotion constructs in the human brain

Grootswagers, T.; Kennedy, B. L.; Most, S. B.; Carlson, T. A.

10.1101/200873 — neuroscience — Posted on 2017-10-10

1234 Bayesian Optimisation for Neuroimaging Pre-processing in Brain Age Prediction

Lancaster, J.; Lorenz, R.; Leech, R.; Cole, J. H.

10.1101/201061 — neuroscience — Posted on 2017-10-10

1235 Development of a novel Francisella tularensis Live Vaccine Strain expressing ovalbumin provides insight into Francisella tularensis-specific CD8+ T cell responses.

Place, D. E.; Williamson, D. R.; Yuzefpolskiy, Y.; Katkere, B.; Sarkar, S.; Kalia, V.; Kirimanjeswara, G. S.

10.1101/200592 — immunology — Posted on 2017-10-10

1236 Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank

Tikkanen, E.; Gustafsson, S.; Amar, D.; Shcherbina, A.; Waggott, D.; Ashley, E.; Ingelsson, E.

10.1101/201020 — genomics — Posted on 2017-10-10

1237 Compensatory evolution via cryptic genetic variation: Distinct trajectories to phenotypic and fitness recovery

Chari, S.; Marier, C.; Porter, C.; Northrop, E.; Belinky, A.; Dworkin, I.

10.1101/200725 — evolutionary biology — Posted on 2017-10-10

1238 Motility in multicellular Chlamydomonas reinhardtii

Boyd, M.; Herron, M. D.; Rosenzweig, F.

10.1101/201194 — evolutionary biology — Posted on 2017-10-10

1239 Simple nanofluidic devices for high-throughput, non-equilibrium studies at the single-molecule level

Fijen, C.; Fontana, M.; Lemay, S. G.; Mathwig, K.; Hohlbein, J.

10.1101/201079 — biophysics — Posted on 2017-10-10

1240 SSEalign: accurate function prediction of bacterial unannotated protein, based on effective training dataset

Yang, Z.; Tsui, S. K.-W.

10.1101/200915 — bioinformatics — Posted on 2017-10-10

1241 Touching proteins with virtual bare hands: how to visualize protein-drug complexes and their dynamics in virtual reality

Martins Ratamero, E.; Bellini, D.; Dowson, C.; Roemer, R. A.

10.1101/201152 — bioinformatics — Posted on 2017-10-10

1242 Aqueous ethanol permeation across Sterlitech flat sheet aquaporin membranes

Lewis, J.; Alshami, A.

10.1101/200709 — bioengineering — Posted on 2017-10-10

1243 Enzymatic synthesis of gene-length single-stranded DNA

Veneziano, R.; Shepherd, T. R.; Ratanalert, S.; Bellou, L.; Tao, C.; Bathe, M.

10.1101/200550 — bioengineering — Posted on 2017-10-10

1244 Open Source LED controller for circadian experiments

Ogueta, M.; Garcia Rodriguez, L.

10.1101/201087 — animal behavior and cognition — Posted on 2017-10-10

1245 Can a red wood-ant nest be a trap for fault-related CH4 micro-seepage? A case study from continuous short-term in-situ sampling

Berberich, G.; Ellison, A.; Berberich, M.; Grumpe, A.; Becker, A.; Wöhler, C.

10.1101/154245 — ecology — Posted on 2017-10-10

1246 Impact of domain knowledge on blinded predictions of binding energies by alchemical free energy calculations

Mey, A. S. J. S.; Juarez-Jimenez, J.; Michel, J.

10.1101/150474 — biophysics — Posted on 2017-10-10

1247 Spike-Timing Patterns Conform to Gamma Distribution with Regional and Cell Type-Specific Characteristics

Li, M.; Xie, K.; Kuang, H.; Liu, J.; Wang, D.; Fox, G. E.; Wei, W.; Li, X.; Li, Y.; Zhao, F.; Chen, L.; Shi, Z.; Cui, H.; Mao, Y.; Tsien, J. Z.

10.1101/145813 — neuroscience — Posted on 2017-10-10

1248 Active Trachoma Cases In The Solomon Islands Have Varied Polymicrobial Community Structures But Do Not Associate With Individual Non-Chlamydial Pathogens Of The Eye

Butcher, R.; Sokana, O.; Jack, K.; Kalae, E.; Sui, L.; Russell, C.; Houghton, J.; Palmer, C.; Holland, M. J.; Le Mesurier, R.; Solomon, A.; Mabey, D.; Roberts, C. h.

10.1101/134213 — microbiology — Posted on 2017-10-10

1249 Multifactorial Chromosomal Variants Regulate Polymyxin Resistance In Extensively Drug-Resistant Klebsiella pneumoniae

Pitt, M.; Elliott, A.; Cao, M. D.; Ganesamoorthy, D.; Karaiskos, I.; Giamarellou, H.; Abboud, C. S.; Blaskovich, M. A. T.; Cooper, M. A.; Coin, L. J. M.

10.1101/134684 — microbiology — Posted on 2017-10-10

1250 In vitro induction and in vivo engraftment of lung bud tip progenitor cells derived from human pluripotent stem cells

Miller, A. J.; Hill, D. R.; Nagy, M. S.; Aoki, Y.; Dye, B. R.; Chin, A. M.; Huang, S.; Zhu, F.; White, E. S.; Lama, V.; Spence, J. R.

10.1101/108845 — developmental biology — Posted on 2017-10-10

1251 Unsupervised multiple kernel learning for heterogeneous data integration

Mariette, J.; Villa-Vialaneix, N.

10.1101/139287 — bioinformatics — Posted on 2017-10-10

1252 Identification of Animal Behavioral Strategies by Inverse Reinforcement Learning

Yamaguchi, S.; Naoki, H.; Ikeda, M.; Tsukada, Y.; Nakano, S.; Mori, I.; Ishii, S.

10.1101/129007 — neuroscience — Posted on 2017-10-10

1253 Tree-ensemble analysis tests for presence of multifurcations in single cell data

Macnair, W.; Roditi, L. D. V.; Ganscha, S.; Claassen, M.

10.1101/200923 — systems biology — Posted on 2017-10-10

1254 Variants in RNA-Seq data show a continued mutation rate during strain preservation of Schizophyllum commune

Gehrmann, T.; Pelkmans, J. F.; Lugones, L. G.; Wösten, H. A. B.; Abeel, T.; Reinders, M. J. T.

10.1101/201012 — genomics — Posted on 2017-10-10

1255 Genomic divergence footprints in the bracovirus of Cotesia sesamiae identified by targeted re-sequencing approach

Gauthier, J.; Gayral, P.; Le Ru, B.; Jancek, S.; Dupas, S.; Kaiser, L.; Gyapay, G.; Herniou, E. A.

10.1101/200782 — evolutionary biology — Posted on 2017-10-10

1256 Practical computational reproducibility in the life sciences

Grüning, B.; Chilton, J.; Köster, J.; Dale, R.; Goecks, J.; Backofen, R.; Nekrutenko, A.; Taylor, J.

10.1101/200683 — bioinformatics — Posted on 2017-10-10

1257 Whole genome sequence and comparative analysis of Borrelia burgdorferi MM1

Jabbari, N.; Glusman, G.; Lausted, C. G.

10.1101/200766 — genomics — Posted on 2017-10-10

1258 How epigenome drives chromatin folding and dynamics, insights from efficient coarse-grained models of chromosomes

Ghosh, S. K.; Jost, D.

10.1101/200584 — biophysics — Posted on 2017-10-10

1259 The importance of the photosynthetic Gibbs effect in the elucidation of the Calvin-Benson-Bassham Cycle

Ebenhoeh, O.; Spelberg, S.

10.1101/200105 — biochemistry — Posted on 2017-10-10

1260 Development of a riboswitch-based platform for live cell imaging of RNAs in mammalian cells

Braselmann, E.; Wierzba, A. J.; Polaski, J. T.; Chrominski, M.; Batan, D.; Gryko, D.; Batey, R. T.; Palmer, A. E.

10.1101/199240 — biochemistry — Posted on 2017-10-10

1261 The centrosomin CM2 domain is a multi-functional binding domain with distinct cell cycle roles

Citron, Y. R.; Fagerstrom, C. J.; Keszthelyi, B.; Huang, B.; Rusan, N. M.; Kelly, M. J. S.; Agard, D. A.

10.1101/200204 — biochemistry — Posted on 2017-10-10

1262 Error-prone bypass of DNA lesions during lagging strand replication is a common source of germline and cancer mutations

Seplyarskiy, V.; Andrianova, M. A.; Nikolaev, S. I.; Bazykin, G. A.; Sunyaev, S. R.

10.1101/200691 — biochemistry — Posted on 2017-10-10

1263 Algorithmic complexity of EEG as a prognosis biomarker of neurodegeneration in idiopathic rapid eye movement behavior disorder (RBD)

Ruffini, G.; Ibanez, D.; Kroupi, E.; Gagnon, J.-F.; Montplaisir, J.; Postuma, R. B.; Soria-Frisch, A.

10.1101/200543 — neuroscience — Posted on 2017-10-09

1264 Identification of Memory Reactivation during Sleep by EEG Classification

Belal, S.; Cousins, J.; El-Deredy, W.; Parkes, L.; Schneider, J.; Tsujimura, H.; Zoumpoulaki, A.; Perapoch, M.; Lewis, P. A.

10.1101/200436 — neuroscience — Posted on 2017-10-09

1265 High-Precision Automated Reconstruction of Neurons with Flood-filling Networks

Januszewski, M.; Kornfeld, J.; Li, P. H.; Pope, A.; Blakely, T.; Lindsey, L.; Maitin-Shepard, J. B.; Tyka, M.; Denk, W.; Jain, V.

10.1101/200675 — neuroscience — Posted on 2017-10-09

1266 Hippocampus, retrosplenial and parahippocampal cortices encode multi-compartment 3D space in a hierarchical manner

Kim, M.; Maguire, E. A.

10.1101/200576 — neuroscience — Posted on 2017-10-09

1267 Systemic Markers of Adaptive and Innate Immunity Are Associated with COPD Severity and Spirometric Disease Progression

Halper-Stromberg, E.; Yun, J. H.; Parker, M. M.; Tal-Singer, R. M.; Gaggar, A.; Silverman, E. K.; Leach, S.; Bowler, R. P.; Castaldi, P. J.

10.1101/193920 — genomics — Posted on 2017-10-09

1268 Comprehensive characterization of pediatric AML reveals diverse fusion oncoproteins and age-specific mutational interactions

10.1101/125609 — cancer biology — Posted on 2017-10-09

1269 A Data Citation Roadmap for Scholarly Data Repositories

Fenner, M.; Crosas, M.; Grethe, J.; Kennedy, D.; Hermjakob, H.; Rocca-Serra, P.; Durand, G.; Berjon, R.; Karcher, S.; Martone, M.; Clark, T.

10.1101/097196 — scientific communication and education — Posted on 2017-10-09

1270 Enabling Precision Medicine via standard communication of NGS provenance, analysis, and results

Alterovitz, G.; Dean, D. A.; Goble, C.; Crusoe, M. R.; Soiland-Reyes, S.; Bell, A.; Hayes, A.; King, C. H. S.; Johanson, E.; Thompson, E. E.; Donaldson, E.; Tsang, H. S.; Goecks, J.; Yao, J.; Almeida, J. S.; Guo, L.; Walderhaug, M.; Walsh, P.; Kahsay, R.; Bloom, T.; Lai, Y.; Simonyan, V.; Mazumder, R.

10.1101/191783 — scientific communication and education — Posted on 2017-10-09

1271 cAMP signaling mediates behavioral flexibility and consolidation of social status in Drosophila aggression

Chouhan, N. S.; Mohan, K.; Ghose, A.

10.1101/089979 — neuroscience — Posted on 2017-10-09

1272 The case against full probability distributions in perceptual decision making

Rahnev, D.

10.1101/108944 — neuroscience — Posted on 2017-10-09

1273 Nasty Prophages and the Dynamics of Antibiotic-Tolerant Persister Cells

Harms, A.; Fino, C.; Sorensen, M. A.; Semsey, S.; Gerdes, K.

10.1101/200477 — microbiology — Posted on 2017-10-09

1274 A mechanism for prime-realignment during influenza A virus replication

Oymans, J.; te Velthuis, A.

10.1101/138487 — microbiology — Posted on 2017-10-09

1275 High-throughput annotation of full-length long noncoding RNAs with Capture Long-Read Sequencing

Lagarde, J.; Uszczynska-Ratajczak, B.; Carbonell, S.; Perez-Lluch, S.; Abad, A.; Davis, C.; Gingeras, T. R.; Frankish, A.; Harrow, J.; Guigo, R.; Johnson, R.

10.1101/105064 — genomics — Posted on 2017-10-09

1276 A strategy to exploit surrogate sire technology in livestock breeding programs

Gottardo, P.; Gorjanc, G.; Battagin, M.; Gaynor, C. R.; Jenko, J.; Freixedes, R. R.; Whitelaw, B.; Mileham, A.; Herring, W.; Hickey, J.

10.1101/199893 — genetics — Posted on 2017-10-09

1277 Introducing prescribed biases in out of equilibrium Markov models

Dixit, P.

10.1101/198697 — biophysics — Posted on 2017-10-09

1278 Tribe: The collaborative platform for reproducible web-based analysis of gene sets

Zelaya, R. A.; Wong, A. K.; Frase, A. T.; Ritchie, M. D.; Greene, C. S.

10.1101/055913 — bioinformatics — Posted on 2017-10-09

1279 Control of Cardiac Mitochondrial Fuel Selection by Calcium

Kandel, S. M.; Dasika, S. K.; Dash, R. K.; Beard, D. A.

10.1101/198895 — biochemistry — Posted on 2017-10-09

1280 Flexibility in motor timing constrains the topology and dynamics of pattern generator circuits

Pehlevan, C.; Ali, F.; Olveczky, B. P.

10.1101/033472 — neuroscience — Posted on 2017-10-09

1281 A dynamical model of TCRβ gene recombination: Coupling the initiation of Dβ-Jβ rearrangement to TCRβ allelic exclusion

Jaeger, S.; Lima, R.; Meyroneinc, A.; Bonnet, M.; Ugalde, E.; Ferrier, P.

10.1101/200444 — immunology — Posted on 2017-10-09

1282 NAC-NOR mutations in tomato Penjar accessions attenuate multiple metabolic processes and prolong the fruit shelf life

Kumar, R.; Tamboli, V.; Sharma, R.; Sreelakshmi, Y.

10.1101/200295 — plant biology — Posted on 2017-10-09

1283 An Early Devonian permineralized rhyniopsid from the Battery Point Formation of Gaspe (Canada)

Pfeiler, K. C.; Tomescu, A. M.

10.1101/200246 — paleontology — Posted on 2017-10-09

1284 Working Memory Training Integrates Visual Cortex into Beta-Band Networks in Congenitally Blind Individuals

Rimmele, J. M.; Gudi-Mindermann, H.; Nolte, G.; Roeder, B.; Engel, A. K.

10.1101/200121 — neuroscience — Posted on 2017-10-09

1285 OPRM1 A118G and serum β-endorphin interact with sex and digit ratio (2D:4D) to influence risk and course of alcohol dependence

Gegenhuber, J. B.; Weinland, C.; Kornhuber, J.; Muehle, C.; Lenz, B.

10.1101/200196 — neuroscience — Posted on 2017-10-09

1286 Vagal Nerve Stimulation Triggers Wide-Spread Evoked Responses and Changes in Large-Scale Functional Connectivity in Rat Brains

Cao, J.; Lu, K.-H.; Powley, T. L.; Liu, Z.

10.1101/200220 — neuroscience — Posted on 2017-10-09

1287 Experience-dependent modulation of behavioral features in sensory navigation of nematodes and bats revealed by machine learning

Yamazaki, S. J.; Ikejiri, Y.; Hiramatsu, F.; Fujita, K.; Tanimoto, Y.; Yamada, Y.; Hashimoto, K.; Hiryu, S.; Maekawa, T.; Kimura, K. D.

10.1101/198879 — neuroscience — Posted on 2017-10-09

1288 Speech tracking in auditory and motor regions reflects distinct linguistic features

Keitel, A.; Gross, J.; Kayser, C.

10.1101/195941 — neuroscience — Posted on 2017-10-09

1289 Propagation of BOLD activity reveals directed interactions across human visual cortex

Gravel, N.; Renken, R. J.; Harvey, B. M.; Deco, G.; Cornelissen, F. W.; Gilson, M.

10.1101/172452 — neuroscience — Posted on 2017-10-09

1290 Phencyclidine discoordinates hippocampal network activity but not place fields

Kao, H.-Y.; Dvorak, D.; Park, E.; Kenney, J.; Kelemen, E.; Fenton, A. A.

10.1101/200162 — neuroscience — Posted on 2017-10-09

1291 Mapfuser: an integrative toolbox for consensus map construction and Marey maps

van Muijen, D.; Basnet, R.; Dek, N.; Maliepaard, C.; Gutteling, E.

10.1101/200311 — genetics — Posted on 2017-10-09

1292 A parametric interpretation of Bayesian Nonparametric Inference from Gene Genealogies: linking ecological, population genetics and evolutionary processes

Ponciano, J. M.

10.1101/200469 — genetics — Posted on 2017-10-09

1293 Distress feeding of depredatory birds in Sunflower and Sorghum protected by bioacoustics

Mahesh, S. S.; Vasudeva Rao, V.; Surender, G.; Kiran kumar, D. A.; Swamy, K.

10.1101/200097 — ecology — Posted on 2017-10-09

1294 The geometry of the distance-decay of similarity in ecological communities

Ladau, J.; Green, J. L.; Pollard, K. S.

10.1101/200212 — ecology — Posted on 2017-10-09

1295 Comparing Cell Division- and Cell Reproduction-based Cell Lineage Analysis for Early Embryogenesis of Caenorhabditis elegans

Liu, S. V.

10.1101/199604 — developmental biology — Posted on 2017-10-09

1296 Combined analysis of genome sequencing and RNA-motifs reveals novel damaging non-coding mutations in human tumors

Singh, B.; Trincado Alonso, J. L. L.; Tatlow, P.; Piccolo, S. R.; Eyras, E.

10.1101/200188 — cancer biology — Posted on 2017-10-09

1297 Investigating low-velocity fluid flow in tumours using convection-MRI

Walker-Samuel, S.; Roberts, T. A.; Ramasawmy, R.; Burrell, J.; Johnson, S. P.; Siow, B.; Richardson, S.; Goncalves, M.; Pendse, D.; Robinson, S. P.; Pedley, R. B.; Lythgoe, M. F.

10.1101/200279 — biophysics — Posted on 2017-10-09

1298 Backbone brackets and arginine tweezers delineate class I and class II aminoacyl tRNA synthetases

Kaiser, F.; Bittrich, S.; Salentin, S.; Leberecht, C.; Haupt, V. J.; Krautwurst, S.; Schroeder, M.; Labudde, D.

10.1101/198846 — bioinformatics — Posted on 2017-10-09

1299 Vital Signs Analysis Algorithm Detects Inflammatory Response in Premature Infants with Late Onset Sepsis and Necrotizing Enterocolitis

Mithal, L.; Yogev, R.; Palac, H. L.; Kaminsky, D.; Gur, I.; Mestan, K. K.

10.1101/200329 — bioinformatics — Posted on 2017-10-09

1300 Community assessment of cancer drug combination screens identifies strategies for synergy prediction

Menden, M. P.; Wang, D.; Guan, Y.; Mason, M.; Szalai, B.; Bulusu, K. C.; Yu, T.; Kang, J.; Jeon, M.; Wolfinger, R.; Nguyen, T.; Zaslavskiy, M.; AstraZeneca-Sanger Drug Combination DREAM Consorti, ; Jang, I. S.; Ghazoui, Z.; Ahsen, M. E.; Vogel, R.; Chaibub Neto, E.; Norman, T.; Tang, E. K.; Garnett, M. J.; Di Veroli, G.; Fawell, S.; Stolovitzky, G.; Guinney, J.; Dry, J. R.; Saez-Rodriguez, J.

10.1101/200451 — bioinformatics — Posted on 2017-10-09

1301 A transcriptome and literature guided algorithm for reconstruction of pathways to assess activity of telomere maintenance mechanisms

Nersisyan, L.; Arakelyan, A.

10.1101/200535 — bioinformatics — Posted on 2017-10-09

1302 DGIdb 3.0: a redesign and expansion of the drug-gene interaction database

Cotto, K. C.; Wagner, A. H.; Feng, Y.-Y.; Kiwala, S.; Coffman, A. C.; Spies, G.; Wollam, A.; Spies, N. C.; Griffith, O. L.; Griffith, M.

10.1101/200527 — bioinformatics — Posted on 2017-10-09

1303 An Algorithmic Information Calculus for Causal Discovery and Reprogramming Systems

Zenil, H.; Kiani, N. A.; Marabita, F.; Deng, Y.; Elias, S.; Schmidt, A.; Ball, G.; Tegner, J.

10.1101/185637 — systems biology — Posted on 2017-10-09

1304 A systematic survey of centrality measures for protein-protein interaction networks

Ashtiani, M.; Salehzadeh, A.; Razaghi-Moghadam, Z.; Hennig, H.; Wolkenhauer, O.; Mirzaie, M.; Jafari, M.

10.1101/149492 — systems biology — Posted on 2017-10-09

1305 Nitrate modulates stem cell dynamics by regulating WUSCHEL expression through cytokinins

Landrein, B.; Formosa-Jordan, P.; Malivert, A.; Schuster, C.; Melnyk, C. W.; Yang, W.; Turnbull, C.; Meyerowitz, E. M.; Locke, J. C. W.; Jonsson, H.

10.1101/200303 — plant biology — Posted on 2017-10-09

1306 Case report: intermittent fasting and probiotic yogurt consumption are associated with reduction of serum alpha-N-acetylgalactosaminidase and increased urinary excretion of lipophilic toxicants

Blythe, J.; Ruggiero, M.; Pacini, S.

10.1101/177774 — pharmacology and toxicology — Posted on 2017-10-09

1307 RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination

Roy Choudhury, N.; Heikel, G.; Trubitsyna, M.; Kubik, P.; Nowak, J. S.; Webb, S.; Granneman, S.; Spanos, C.; Rappsilber, J.; Castello Palomares, A.; Michlewski, G.

10.1101/200410 — molecular biology — Posted on 2017-10-09

1308 Initiation, elongation and realignment during influenza virus mRNA synthesis

te Velthuis, A.; Oymans, J.

10.1101/197210 — microbiology — Posted on 2017-10-09

1309 Umbilical Cord Blood Diagnostics for Early Onset Sepsis in Premature Infants: Detection of Bacterial DNA and Systemic Inflammatory Response

Mithal, L.; Malczynski, M.; Qi, C.; Green, S.; Seed, P. C.; Mestan, K. K.

10.1101/200337 — microbiology — Posted on 2017-10-09

1310 Nasty Prophages and the Dynamics of Antibiotic-Tolerant Persister Cells

Harms, A.; Fino, C.; Sorensen, M. A.; Semsey, S.; Gerdes, K.

10.1101/200477 — microbiology — Posted on 2017-10-09

1311 Landscape genomic prediction for restoration of a Eucalyptus foundation species under climate change

Supple, M. A.; Bragg, J. G.; Broadhurst, L. M.; Nicotra, A. B.; Byrne, M.; Andrew, R. L.; Widdup, A.; Aitken, N. C.; Borevitz, J.

10.1101/200352 — genomics — Posted on 2017-10-09

1312 Cis-regulatory evolution integrated the Bric-a-brac transcription factors into a novel fruit fly gene regulatory network

Williams, T. M.; Rebeiz, M.; Camino, E. M.; Roeske, M. J.; Grover, S.

10.1101/200360 — genetics — Posted on 2017-10-09

1313 Quantifying movement behavior, the first step of sexual selection, in the lizard Anolis sagrei.

Kamath, A.; Losos, J.

10.1101/164863 — ecology — Posted on 2017-10-09

1314 Inferring parameters for a lattice-free model of cell migration and proliferation using experimental data

Browning, A.; McCue, S. W.; Binny, R. N.; Plank, M. J.; Shah, E. T.; Simpson, M. J.

10.1101/186197 — cell biology — Posted on 2017-10-09

1315 Necklace: combining reference and assembled transcriptomes for RNA-Seq analysis

Davidson, N. M.; Oshlack, A.

10.1101/200287 — bioinformatics — Posted on 2017-10-09

1316 Re-Identification of Individuals in Genomic Data-Sharing Beacons via Allele Inference

von Thenen, N.; Ayday, E.; Cicek, A. E.

10.1101/200147 — bioinformatics — Posted on 2017-10-09

1317 Hormonal regulation of women’s prosocial, but not sexual, responses to kinship cues

Holzleitner, I. J. J.; Hahn, A. C.; Fisher, C. I.; Lee, A. J.; O'Shea, K. J.; Jones, B. C.; DeBruine, L. M.

10.1101/192054 — animal behavior and cognition — Posted on 2017-10-09

1318 A blueprint for human whole-cell modeling

Szigeti, B.; Roth, Y. D.; Sekar, J. A. P.; Goldberg, A. P.; Pochiraju, S. C.; Karr, J. R.

10.1101/198044 — systems biology — Posted on 2017-10-09

1319 Microfluidic Transfection for High-Throughput Mammalian Protein Expression

Woodruff, K.; Maerkl, S. J.

10.1101/200261 — molecular biology — Posted on 2017-10-09

1320 Rab5 and Alsin regulate stress-activated cytoprotective signaling on mitochondria

Hsu, F.; Spannl, S.; Ferguson, C.; Hyman, A. A.; Parton, R. G.; Zerial, M.

10.1101/200428 — cell biology — Posted on 2017-10-09

1321 CLASP stabilizes microtubule plus ends after severing to facilitate light-induced microtubule reorientation

Lindeboom, J. J.; Nakamura, M.; Saltini, M.; Hibbel, A.; Walia, A.; Keetlaar, T.; Emons, A. M. C.; Sedbrook, J. C.; Kirik, V.; Mulder, B. M.; Ehrhardt, D. W.

10.1101/196329 — cell biology — Posted on 2017-10-09

1322 The role of m6A-RNA methylation in stress response regulation

Engel, M.; Roeh, S.; Eggert, C.; Kaplick, P. M.; Tietze, L.; Arloth, J.; Weber, P.; Rex-Haffner, M.; Jakovcevski, M.; Uhr, M.; Eder, M.; Wotjak, C. T.; Schmidt, M. V.; Deussing, J. M.; Binder, E. B.; Chen, A.

10.1101/200402 — neuroscience — Posted on 2017-10-09

1323 Dissociating ego- and allocentric neglect after stroke: prevalence, laterality and outcome predictors

Demeyere, N.; Gillebert, C.

10.1101/200386 — neuroscience — Posted on 2017-10-09

1324 Assessment of batch-correction methods for scRNA-seq data with a new test metric

Buttner, M.; Miao, Z.; Wolf, A.; Teichmann, S. A.; Theis, F. J.

10.1101/200345 — bioinformatics — Posted on 2017-10-09

1325 Enhanced skeletal muscle ribosome biogenesis, yet attenuated mTORC1 and ribosome biogenesis-related signalling, following short-term concurrent versus single-mode resistance training.

Fyfe, J. J.; Bishop, D. J.; Bartlett, J. D.; Hanson, E. D.; Anderson, M. J.; Garnham, A. P.; Stepto, N. K.

10.1101/115212 — physiology — Posted on 2017-10-08

1326 Experience-dependent neuroplasticity of the developing hypothalamus: integrative epigenomic approaches

Vogel Ciernia, A.; Laufer, B. I.; Dunaway, K. W.; Mordaunt, C. E.; Coulson, R. L.; Totah, T. S.; Stolzenberg, D. S.; Frahm, J. C.; Singh-Taylor, A.; Baram, T. Z.; LaSalle, J. M.; Yasui, D. H.

10.1101/191791 — neuroscience — Posted on 2017-10-08

1327 Perimenstrual Symptom Exacerbation in Borderline Personality Disorder: Evidence from Multilevel Models and the Carolina Premenstrual Assessment Scoring System

Eisenlohr-Moul, T.; Schmalenberger, K. M.; Owens, S. A.; Peters, J. R.; Dawson, D. N.; Girdler, S. S.

10.1101/192658 — neuroscience — Posted on 2017-10-08

1328 Neolithic super-grandfather Y haplotypes, their related surnames, and autism spectrum disorder

He, P.; Chen, N.; Hu, Z.; Zhu, Z.; Xia, K.; Huang, S.

10.1101/077222 — genetics — Posted on 2017-10-08

1329 The GENIUS Approach to Robust Mendelian Randomization Inference

Tchetgen Tchetgen, E.; Sun, B.; Walter, S.

10.1101/193953 — epidemiology — Posted on 2017-10-08

1330 Detection of complex structural variation from paired-end sequencing data

Arthur, J. G.; Chen, X.; Zhou, B.; Urban, A. E.; Wong, W. H.

10.1101/200170 — bioinformatics — Posted on 2017-10-08

1331 Unsupervised multiple kernel learning for heterogeneous data integration

Mariette, J.; Villa-Vialaneix, N.

10.1101/139287 — bioinformatics — Posted on 2017-10-08

1332 Droplet-based microfluidic analysis and screening of single plant cells

Yu, Z.; Boehm, C. R.; Hibberd, J. M.; Abell, C.; Haseloff, J.; Burgess, S. J.; Reyna-Llorens, I.

10.1101/199992 — synthetic biology — Posted on 2017-10-08

1333 Htz1 and Set1 Regulate Ergosterol Levels in Response to Environmental Stress.

Aslan, K.; Ozaydin, B.

10.1101/199174 — molecular biology — Posted on 2017-10-08

1334 Codon-Dependent Translational Accuracy Controls Protein Quality in Escherichia coli but not in Saccharomyces cerevisiae

Josse, L.; Sampson, C. D. D.; Tuite, M. F.; Howland, K.; von der Haar, T.

10.1101/200006 — molecular biology — Posted on 2017-10-08

1335 High-throughput fitness profiling of Zika virus E protein reveals different roles for N-linked glycosylation during infection of mammalian and mosquito cells

Gong, D.; Zhang, T.-h.; Zhao, D.; Du, Y.; Chapa, T. J.; Shi, Y.; Wang, L.; Contreras, D.; Zeng, G.; Shi, P.-y.; Wu, T.-T.; Arumugaswami, V.; Sun, R.

10.1101/199935 — microbiology — Posted on 2017-10-08

1336 Deciphering programs of transcriptional regulation by combined deconvolution of multiple omics layers

Huebschmann, D.; Kurzawa, N.; Steinhauser, S.; Rentzsch, P.; Kraemer, S.; Andresen, C.; Park, J.; Eils, R.; Schlesner, M.; Herrmann, C.

10.1101/199547 — genomics — Posted on 2017-10-08

1337 Large-scale screening of rare genetic variants in humans reveals frequent splicing disruptions

Cheung, R.; Insigne, K. D.; Yao, D.; Burghard, C. P.; Jones, E. M.; Goodman, D. B.; Kosuri, S.

10.1101/199927 — genetics — Posted on 2017-10-08

1338 Enigmatic Diphyllatea eukaryotes: Culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution

Orr, R. J. S.; Zhao, S.; Klaveness, D.; Yabuki, A.; Ikeda, K.; Makoto, W. M.; Shalchian-Tabrizi, K.

10.1101/199125 — evolutionary biology — Posted on 2017-10-08

1339 Long-lived rodents reveal signatures of positive selection in genes associated with lifespan and eusociality

Sahm, A.; Bens, M.; Szafranski, K.; Holtze, S.; Groth, M.; Goerlach, M.; Calkhoven, C.; Mueller, C.; Schwab, M.; Kestler, H. A.; Cellerino, A.; Burda, H.; Hildebrandt, T.; Dammann, P.; Platzer, M.

10.1101/191999 — evolutionary biology — Posted on 2017-10-08

1340 Dynamical localization of a thylakoid membrane binding protein is required for acquisition of photosynthetic competency

Gutu, A.; Chang, F.; O'Shea, E. K.

10.1101/199943 — cell biology — Posted on 2017-10-08

1341 A spontaneously blinking fluorescent protein for simple single laser super-resolution live cell imaging

Arai, Y.; Takauchi, H.; Ogami, Y.; Fujiwara, S.; Nakano, M.; Nagai, T.

10.1101/200014 — biophysics — Posted on 2017-10-08

1342 Delta integrates 3D physical structure with topology and genomic data of chromosomes

Tang, B.; Li, F.; Li, J.; Zhao, W.; Zhang, Z.

10.1101/199950 — bioinformatics — Posted on 2017-10-08

1343 Gum Arabic promotes oxidation and ester hydrolysis.

Vercruysse, K.; Tyler, L.; Readus, J.

10.1101/199711 — biochemistry — Posted on 2017-10-08

1344 An Algorithmic Information Calculus for Causal Discovery and Reprogramming Systems

Zenil, H.; Kiani, N. A.; Marabita, F.; Deng, Y.; Elias, S.; Schmidt, A.; Ball, G.; Tegner, J.

10.1101/185637 — systems biology — Posted on 2017-10-08

1345 A descending pathway facilitates undulatory wave propagation in Caenorhabditis elegans through gap junctions

Xu, T.; Huo, J.; Shao, S.; Po, M.; Kawano, T.; Lu, Y.; Wu, M.; Zhen, M.; Wen, Q.

10.1101/131490 — neuroscience — Posted on 2017-10-08

1346 Development differentially sculpts receptive fields across human visual cortex

Gomez, J.; Natu, V.; Jeska, B.; Barnett, M.; Grill-Spector, K.

10.1101/199901 — neuroscience — Posted on 2017-10-08

1347 Mapping Patient Trajectories using Longitudinal Extraction and Deep Learning in the MIMIC-III Critical Care Database

Beaulieu-Jones, B. K.; Orzechowski, P.; Moore, J. H.

10.1101/177428 — bioinformatics — Posted on 2017-10-07

1348 Cryptic phylogeographic history sheds light on the generation of species diversity in sky-island mountains

He, K.; Wan, T.; Koepfli, K.-P.; Jin, W.; Liu, S.-Y.; Jiang, X.-L.

10.1101/199786 — zoology — Posted on 2017-10-07

1349 Short linear motifs in intrinsically disordered regions modulate HOG signaling capacity

Strome, B.; Hsu, I. S.; Li Cheong Man, M.; Zarin, T.; Nguyen Ba, A. N.; Moses, A. M.

10.1101/199653 — systems biology — Posted on 2017-10-07

1350 Electrophysiological indices of anterior cingulate cortex function reveal changing levels of cognitive effort and reward valuation that sustain task performance

Umemoto, A.; Inzlicht, M.; Holroyd, C. B.

10.1101/199687 — neuroscience — Posted on 2017-10-07

1351 Eye opening differentially modulates inhibitory synaptic transmission in the developing visual cortex

Guan, W.; Cao, J.-W.; Liu, L.-Y.; Zhao, Z.-H.; Fu, Y.; Yu, Y.-C.

10.1101/199661 — neuroscience — Posted on 2017-10-07

1352 Hierarchy of transcriptomic specialization across human cortex captured by myelin map topography

Burt, J. B.; Demirtas, M.; Eckner, W. J.; Navejar, N. M.; Ji, J. L.; Martin, W. J.; Bernacchia, A.; Anticevic, A.; Murray, J. D.

10.1101/199703 — neuroscience — Posted on 2017-10-07

1353 Repurposed kinase inhibitors and β-lactams as a novel therapy for antibiotic resistant bacteria

Wlodarchak, N.; Teachout, N.; Procknow, R.; Beczkiewicz, J.; Schaenzer, A.; Satyshur, K.; Pavelka, M.; Zuercher, B.; Drewry, D.; Sauer, J.-D.; Striker, R.

10.1101/199422 — microbiology — Posted on 2017-10-07

1354 High Dynamic Range Bacterial Cell Detection in a Novel "Lab-In-A-Comb" for High-Throughput Antibiotic Susceptibility Testing of Clinical Urine Samples

Pivetal, J.; Woodward, M. J.; Reis, N. M.; Edwards, A. D.

10.1101/199505 — microbiology — Posted on 2017-10-07

1355 Peripherally-induced regulatory T cells contribute to the control of autoimmune diabetes

Schuster, C.; Zhao, F.; Kissler, S.

10.1101/199646 — immunology — Posted on 2017-10-07

1356 Glutathione S-transferases: unexpected roles in astrocyte activation and astrocyte-microglia communication during brain inflammation

Kano, S.-i.; Choi, E. Y.; Dohi, E.; Rose, I. V. L.; Chang, D. J.; Wilson, A. M.; Lo, B. D.; Imai, T.; Sawa, A.

10.1101/199612 — immunology — Posted on 2017-10-07

1357 Investigating genetic correlations and causal effects between caffeine consumption and sleep behaviours

Treur, J. L.; Gibson, M.; Taylor, A. E.; Rogers, P.; Munafo, M. R.

10.1101/199828 — genetics — Posted on 2017-10-07

1358 A strategy to exploit surrogate sire technology in livestock breeding programs

Gottardo, P.; Gorjanc, G.; Battagin, M.; Gaynor, C. R.; Jenko, J.; Freixedes, R. R.; Whitelaw, B.; Mileham, A.; Herring, W.; Hickey, J.

10.1101/199893 — genetics — Posted on 2017-10-07

1359 Idiosyncratic genome degradation in a bacterial endosymbiont of periodical cicadas

Campbell, M. A.; Łukasik, P.; Simon, C.; McCutcheon, J. P.

10.1101/199760 — evolutionary biology — Posted on 2017-10-07

1360 Temperature and Water Quality-Related Patterns in Sediment-Associated Symbiodinium Communities Impact Symbiont Uptake and Fitness of Juvenile Acroporid Corals

Quigley, K.; Bay, L.; Willis, B.

10.1101/199802 — ecology — Posted on 2017-10-07

1361 Transgenerational dynamics of rDNA copy number in Drosophila male germline stem cells

Lu, K. L.; Nelson, J. O.; Warsinger-Pepe, N.; Yamashita, Y. M.

10.1101/199679 — developmental biology — Posted on 2017-10-07

1362 Hey2 restricts cardiac progenitor addition to the developing heart

Gibb, N.; Lazic, S.; Deshwar, A. R.; Yuan, X.; Wilson, M. D.; Scott, I. C.

10.1101/199638 — developmental biology — Posted on 2017-10-07

1363 Enhancer identification and activity evaluation in the red flour beetle, Tribolium castaneum

Lai, Y.-T.; Deem, K. D.; Borras-Castells, F.; Sambrani, N.; Rudolf, H.; Suryamohan, K.; El-Sherif, E.; Halfon, M. S.; McKay, D. J.; Tomoyasu, Y.

10.1101/199729 — developmental biology — Posted on 2017-10-07

1364 Revealing intricate acto-myosin dynamics at a membrane surface using interferometric scattering microscopy

Koester, D.; Hundt, N.; Young, G. C.; Fineberg, A.; Kukura, P.; Mayor, S.

10.1101/199778 — biophysics — Posted on 2017-10-07

1365 The CLAVATA receptor FASCIATED EAR2 responds to different CLE peptides by signaling through different downstream effectors.

Je, B. I.; Xu, F.; Wu, Q.; Liu, L.; Meeley, R.; Jackson, D.

10.1101/194951 — plant biology — Posted on 2017-10-07

1366 An Algorithmic Information Calculus for Causal Discovery and Reprogramming Systems

Zenil, H.; Kiani, N. A.; Marabita, F.; Deng, Y.; Elias, S.; Schmidt, A.; Ball, G.; Tegner, J.

10.1101/185637 — systems biology — Posted on 2017-10-07

1367 Instantiation of incentive value and movement invigoration by distinct midbrain dopamine circuits

Saunders, B. T.; Richard, J. M.; Margolis, E. B.; Janak, P. H.

10.1101/186502 — neuroscience — Posted on 2017-10-07

1368 Accurate Genomic Prediction Of Human Height

Lello, L.; Avery, S. G.; Tellier, L.; Vazquez, A.; de los Campos, G.; Hsu, S. D. H.

10.1101/190124 — genomics — Posted on 2017-10-07

1369 Selection at the pathway level drives the evolution of gene-specific transcriptional noise

Barroso, G. V.; Puzovic, N.; Dutheil, J. Y.

10.1101/104216 — evolutionary biology — Posted on 2017-10-07

1370 Predation of stocked salmon by riparian wildlife in semi-natural stream

Miyamoto, K.; Squires, T.; Araki, H.

10.1101/127472 — ecology — Posted on 2017-10-07

1371 Energy Exchanges at Contact Events Guide Sensorimotor Integration Across Intermodal Delays

Farshchiansadegh, A.; Sciutti, A.; Nisky, I.; Pressman, A.; Mussa-Ivaldi, F. A.

10.1101/199562 — neuroscience — Posted on 2017-10-07

1372 Regional differences of the urinary proteomes in healthy Chinese individuals

Wu, J.; Qin, W.; Pan, L.; Zhang, F.; Wang, X.; Zhang, B.; Shan, G.; Gao, Y.

10.1101/190710 — physiology — Posted on 2017-10-07

1373 Heritable variation in bleaching responses and its functional genomic basis in reef-building corals (Orbicella faveolata)

Dziedzic, K.; Elder, H.; Meyer, E.

10.1101/185595 — evolutionary biology — Posted on 2017-10-07

1374 Heterochronic Developmental Shifts Underlie Floral Diversity within Jaltomata (Solanaceae)

Kostyun, J. L.; Preston, J. C.; Moyle, L. C.

10.1101/169060 — developmental biology — Posted on 2017-10-07

1375 Cross-species functional diversity within the PIN auxin efflux protein family

O'Connor, D. L.; Elton, S.; Ticchiarelli, F.; Hsia, M. M.; Vogel, J.; Leyser, O.

10.1101/089854 — plant biology — Posted on 2017-10-07

1376 Thermal niche evolution across replicated Anolis lizard adaptive radiations

Gunderson, A. R.; Mahler, D. L.; Leal, M.

10.1101/069294 — evolutionary biology — Posted on 2017-10-07

1377 An open library of human kinase domain constructs for automated bacterial expression

Albanese, S. K.; Parton, D. L.; Hanson, S. M.; Rodriguez-Laureano, L.; Isık, M.; Behr, J. M.; Gradia, S.; Jeans, C.; Levinson, N. M.; Seeliger, M. A.; Chodera, J. D.

10.1101/038711 — biochemistry — Posted on 2017-10-07

1378 Attractor dynamics in networks with learning rules inferred from in vivo data

Pereira, U.; Brunel, N.

10.1101/199521 — neuroscience — Posted on 2017-10-06

1379 Evidence-Based Design and Evaluation of a Whole Genome Sequencing Clinical Report for the Reference Microbiology Laboratory

Crisan, A.; McKee, G.; Munzner, T.; Gardy, J. L.

10.1101/199570 — genomics — Posted on 2017-10-06

1380 Clinical and genomic crosstalk between glucocorticoid receptor and estrogen receptor α in endometrial cancer

Vahrenkamp, J. M.; Yang, C.-H.; Rodriguez, A. C.; Almomen, A.; Berrett, K.; Trujillo, A. N.; Guillen, K. P.; Welm, B. E.; Jarboe, E. A.; Janat-Amsbury, M. M.; Gertz, J.

10.1101/199448 — cancer biology — Posted on 2017-10-06

1381 The cell cycle regulatory DREAM complex is disrupted by high expression of oncogenic B-Myb

Iness, A. N.; Felthousen, J.; Ananthapadmanabhan, V.; Guiley, K. Z.; Dozmorov, M.; Rubin, S. M.; Litovchick, L.

10.1101/199539 — cancer biology — Posted on 2017-10-06

1382 Genome analysis reveals evolutionary mechanisms of adaptation in systemic dimorphic fungi

Munoz, J. F.; McEwen, J. G.; Clay, O. K.; Cuomo, C. A.

10.1101/199596 — genomics — Posted on 2017-10-06

1383 Reduction in major transcription factor binding domain families during the evolution of the avian lineage

Graham, A. M.; Presnell, J. S.

10.1101/193896 — evolutionary biology — Posted on 2017-10-06

1384 Ontology-based similarity calculations with an improved annotation model

Koehler, S.

10.1101/199554 — bioinformatics — Posted on 2017-10-06

1385 Therapeutic importance of timely immunophenotyping of breast cancer in a resource-constrained setting: a retrospective hospital-based cohort study

Lopez Pineda, A.; Rodriguez Moran, M. F.; Alvarez Aguilar, C.; Fuentes Valle, S. M.; Acosta Rosales, R.; Bustamante, C. D.

10.1101/198721 — epidemiology — Posted on 2017-10-06

1386 The impact of surveillance and control on highly pathogenic avian influenza outbreaks in poultry in Dhaka division, Bangladesh

Hill, E. M.; House, T.; Dhingra, M. S.; Kalpravidh, W.; Morzaria, S.; Osmani, M. G.; Brum, E.; Yamage, M.; Kalam, M. A.; Prosser, D. J.; Takekawa, J. Y.; Xiao, X.; Gilbert, M.; Tildesley, M. J.

10.1101/193177 — epidemiology — Posted on 2017-10-06

1387 Defining the Layers of a Sensory Cilium with STORM and Cryo-Electron Nanoscopies

Robichaux, M. A.; Potter, V. L.; Zhang, Z.; He, F.; Schmid, M. F.; Wensel, T. G.

10.1101/198655 — cell biology — Posted on 2017-10-06

1388 Impaired phloem loading in genome-edited triple knock-out mutants of SWEET13 sucrose transporters

Bezrutczyk, M.; Hartwig, T.; Horschman, M.; Char, S. N.; Yang, J.; Yang, B.; Sosso, D.; Frommer, W.

10.1101/197921 — plant biology — Posted on 2017-10-06

1389 The molecular mechanism of N-acetylglucosamine side-chain attachment to the Lancefield group A Carbohydrate in Streptococcus pyogenes

Rush, J. S.; Edgar, R. J.; Deng, P.; Chen, J.; Zhu, H.; van Sorge, N. M.; Morris, A. J.; Korotkov, K. V.; Korotkova, N.

10.1101/180810 — microbiology — Posted on 2017-10-06

1390 Introduction of single nucleotide variations into the promoter region of the mouse kidney anion exchanger 1 gene downstream of a TATA box changes its transcriptional activity.

Takeuchi, T.; Hattori-Kato, M.

10.1101/198457 — genomics — Posted on 2017-10-06

1391 The GENIUS Approach to Robust Mendelian Randomization Inference

Tchetgen Tchetgen, E.; Sun, B.; Walter, S.

10.1101/193953 — epidemiology — Posted on 2017-10-06

1392 LDJump: Estimating Variable Recombination Rates from Population Genetic Data

Hermann, P.; Heissl, A.; Tiemann-Boege, I.; Futschik, A.

10.1101/190876 — bioinformatics — Posted on 2017-10-06

1393 Cortical Connectivity In A Macaque Model Of Congenital Blindness

Magrou, L.; Barone, P.; Markov, N. T.; Killackey, H.; Giroud, P.; Berland, M.; Knoblauch, K.; Dehay, C.; Kennedy, H.

10.1101/188888 — neuroscience — Posted on 2017-10-06

1394 Transcription start site profiling uncovers divergent transcription and enhancer-associated RNAs in Drosophila melanogaster

Meers, M. P.; Adelman, K.; Duronio, R. J.; Strahl, B. D.; McKay, D. J.; Matera, A. G.

10.1101/165639 — molecular biology — Posted on 2017-10-06

1395 Single-cell transcriptome analysis identifies distinct cell types and intercellular niche signaling in a primary gastric organoid model

Chen, J.; Lau, B. T.; Andor, N.; Grimes, S. M.; Handy, C.; Wood-Bouwens, C.; Ji, H. P.

10.1101/190132 — genomics — Posted on 2017-10-06

1396 Evaluating Fast Maximum Likelihood-Based Phylogenetic Programs Using Empirical Phylogenomic Data Sets

Zhou, X.; Shen, X.-X.; Hittinger, C. T.; Rokas, A.

10.1101/142323 — evolutionary biology — Posted on 2017-10-06

1397 Serology reflects a decline in the prevalence of trachoma in two regions of The Gambia

Migchelsen, S. J.; Sepulveda, N.; Martin, D.; Cooley, G.; Gwyn, S.; Pickering, H.; Joof, H.; Makalo, P.; Bailey, R.; Burr, S. E.; Mabey, D. C. W.; Solomon, A. W.; Roberts, C. h.

10.1101/149237 — epidemiology — Posted on 2017-10-06

1398 Electron microscopic evidence that Aip1 disintegrates cofilin-saturated F-actin domains in the presence of coronin

Tang, V. W.; Nadkarni, A. V.; Brieher, W.

10.1101/199463 — cell biology — Posted on 2017-10-06

1399 Requirement of the Dynein-adaptor Spindly for mitotic and post-mitotic functions in Drosophila

Clemente, G. D.; Hannaford, M. R.; Januschke, J.; Griffis, E. R.; Muller, H.-A. J.

10.1101/199414 — cell biology — Posted on 2017-10-06

1400 Tau directs intracellular trafficking by regulating the forces exerted by kinesin and dynein teams

Chaudhary, A. R.; Berger, F.; Berger, C. L.; Hendricks, A. G.

10.1101/173609 — biophysics — Posted on 2017-10-06

1401 Picky: a simple method designer for targeted proteomics

Zauber, H.; Kirchner, M.; Selbach, M.

10.1101/163154 — biochemistry — Posted on 2017-10-06

1402 A low-level perceptual correlate of behavioral and clinical deficits in ADHD

Mihali, A.; Young, A. G.; Adler, L. A.; Halassa, M. M.; Ma, W. J.

10.1101/199216 — neuroscience — Posted on 2017-10-06

1403 Attending to what and where: Background connectivity integrates categorical and spatial attention

Tompary, A.; Al-Aidroos, N.; Turk-Browne, N.

10.1101/199190 — neuroscience — Posted on 2017-10-06

1404 The circadian hippocampus and its reprogramming in epilepsy: impact for chronotherapeutics

Debski, K.; Ceglia, N.; Ghestem, A.; Ivanov, A.; Brancati, G. E.; Broer, S.; Bot, A.; Muller, A.; Schoch, S.; Becker, A.; Loscher, W.; Sassone-Corsi, P.; Lukasiuk, K.; Baldi, P.; Bernard, C.

10.1101/199372 — neuroscience — Posted on 2017-10-06

1405 Age-dependent Pavlovian biases influence motor decision-making

Chen, X.; Rutledge, R.; Brown, H.; Dolan, R.; Bestmann, S.; Galea, J. M.

10.1101/199331 — neuroscience — Posted on 2017-10-06

1406 Cross-task contributions of fronto-basal ganglia circuitry in response inhibition and conflict-induced slowing

Jahfari, S.; Ridderinkhof, K. R.; Collins, A. G. E.; Knapen, T.; Waldorp, L.; Frank, M. J.

10.1101/199299 — neuroscience — Posted on 2017-10-06

1407 Linked dimensions of psychopathology and connectivity in functional brain networks

Xia, C. H.; Ma, Z.; Ciric, R.; Gu, S.; Betzel, R. F.; Kaczkurkin, A. N.; Calkin, M. E.; Cook, P. A.; Garcia de la Garza, A.; Vandekar, S.; Moore, T. M.; Roalf, D. R.; Ruparel, K.; Wolf, D. H.; Davatzikos, C.; Gur, R. C.; Gur, R. E.; Shinohara, R. T.; Bassett, D. S.; Satterthwaite, T. D.

10.1101/199406 — neuroscience — Posted on 2017-10-06

1408 Expectation-induced modulation of metastable activity underlies faster coding of sensory stimuli

Mazzucato, L.; La Camera, G.; Fontanini, A.

10.1101/199380 — neuroscience — Posted on 2017-10-06

1409 Exploiting modal demultiplexing properties of tapered optical fibers for tailored optogenetic stimulation

Pisanello, M.; Pisano, F.; Sileo, L.; Maglie, E.; Bellistri, E.; Spagnolo, B.; Mandelbaum, G.; Sabatini, B. L.; De Vittorio, M.; Pisanello, F.

10.1101/199273 — neuroscience — Posted on 2017-10-06

1410 Top-down expectation effects of food labels on motivation

Wegman, J.; van Loon, I.; Smeets, P.; Cools, R.; Aarts, E.

10.1101/199265 — neuroscience — Posted on 2017-10-06

1411 Encoding of Tactile Context in the Mouse Visual Cortex

Kandler, S.; Mao, D.; McNaughton, B. L.; Bonin, V.

10.1101/199364 — neuroscience — Posted on 2017-10-06

1412 The common origin of symmetry and structure in genetic sequences

Cristadoro, G.; Degli Esposti, M.; Altmann, E. G.

10.1101/199323 — genomics — Posted on 2017-10-06

1413 Genome-wide characterization of copy number variants in epilepsy patients

Monlong, J.; Girard, S. L.; Meloche, C.; Cadieux-Dion, M.; Andrade, D. M.; Lafreniere, R. G.; Gravel, M.; Spiegelman, D.; Dionne-Laporte, A.; Boelman, C.; Hamdan, F.; Michaud, J. L.; Rouleau, G.; Minassian, B. A.; Bourque, G.; Cossette, P.

10.1101/199224 — genomics — Posted on 2017-10-06

1414 MaxTiC: Fast Ranking Of A Phylogenetic Tree By Maximum Time Consistency With Lateral Gene Transfers

Chauve, C.; Rafiey, A.; Davin, A. A.; Scornavacca, C.; Veber, P.; Boussau, B.; Szollosi, G.; Daubin, V.; Tannier, E.

10.1101/127548 — evolutionary biology — Posted on 2017-10-06

1415 Demonstration of the potential of environmental DNA as a tool for the detection of avian species

Ushio, M.; Murata, K.; Sado, T.; Nishiumi, I.; Takeshita, M.; Iwasaki, W.; Miya, M.

10.1101/199208 — ecology — Posted on 2017-10-06

1416 Repurposing non-cancer Drugs in Oncology -- How many drugs are out there?

Pantziarka, P.; Sukhatme, V.; Meheus, L.; Sukhatme, V. P.; Bouche, G.

10.1101/197434 — cancer biology — Posted on 2017-10-06

1417 VASC: dimension reduction and visualization of single cell RNA sequencing data by deep variational autoencoder

Wang, D.; Gu, J.

10.1101/199315 — bioinformatics — Posted on 2017-10-06

1418 Egg viability decreases rapidly with time since ovulation in the rainbow darter: implications for the costs of choosiness

Moran, R. L.; Soukup, R. M.; Zhou, M.; Fuller, R. C.

10.1101/199430 — animal behavior and cognition — Posted on 2017-10-06

1419 De novo assemblies of high-quality reference transcriptomes identifies Rosaceae-common and Rosa-specific encoding genes

Li, S.; Zhong, M.; Dong, X.; Jiang, X.; Sun, Y.; Li, D.; Tang, K.; Hu, J.-Y.

10.1101/199257 — plant biology — Posted on 2017-10-06

1420 Zika virus outbreak in Cabo Verde Islands, West Africa: early epidemiological findings

Lourenco, J.; Monteiro, M. d. L.; Valdez, T.; Rodrigues, J. M.; Pybus, O.; Faria, N. R.

10.1101/198952 — epidemiology — Posted on 2017-10-06

1421 The impact of surveillance and control on highly pathogenic avian influenza outbreaks in poultry in Dhaka division, Bangladesh

Hill, E. M.; House, T.; Dhingra, M. S.; Kalpravidh, W.; Morzaria, S.; Osmani, M. G.; Brum, E.; Yamage, M.; Kalam, M. A.; Prosser, D. J.; Takekawa, J. Y.; Xiao, X.; Gilbert, M.; Tildesley, M. J.

10.1101/193177 — epidemiology — Posted on 2017-10-06

1422 90-90-90, epidemic control, and ending AIDS: review of global situation and recommendations

Granich, R.; Williams, B. G.; Gupta, S.; Zuniga, J. M.

10.1101/196972 — epidemiology — Posted on 2017-10-06

1423 Therapeutic importance of timely immunophenotyping of breast cancer in a resource-constrained setting: a retrospective hospital-based cohort study

Lopez Pineda, A.; Rodriguez Moran, M. F.; Alvarez Aguilar, C.; Fuentes Valle, S. M.; Acosta Rosales, R.; Bustamante, C. D.

10.1101/198721 — epidemiology — Posted on 2017-10-06

1424 A 30-minute nucleic acid amplification point-of-care test for genital Chlamydia trachomatis infection in women: a prospective, multi-centre study of diagnostic accuracy

Harding-Esch, E. M.; Cousins, E. C.; Chow, S.- L. C.; Phillips, L. T.; Hall, C. L.; Cooper, N.; Fuller, S. S.; Nori, A. V.; Patel, R.; Thomas-William, S.; Whitlock, G.; Edwards, S.; Green, M.; Clarkson, J.; Arlett, B.; Dunbar, J. K.; Lowndes, C. M.; Sadiq, S. T.

10.1101/196675 — epidemiology — Posted on 2017-10-06

1425 Simulations for Designing and Interpreting Intervention Trials in Infectious Diseases

Halloran, M. E.; Auranen, K.; Baird, S.; Basta, N. E.; Bellan, S.; Brookmeyer, R.; Cooper, B.; DeGruttola, V.; Hughes, J.; Lessler, J.; Lofgren, E. T.; Longini, I.; Onnela, J.-P.; Ozler, B.; Seage, G.; Smith, T. A.; Vespignani, A.; Vynnycky, E.; Lipsitch, M.

10.1101/198051 — epidemiology — Posted on 2017-10-06

1426 Application of benchmark analysis for mixed contaminant exposures: Mutual adjustment of two perfluoroalkylate substances associated with immunotoxicity

Budtz-Joergensen, E.; Grandjean, P.

10.1101/198564 — epidemiology — Posted on 2017-10-06

1427 Melanoma proteomics unravels major differences related to mutational status

Trilla-Fuertes, L.; Gamez-Pozo, A.; Prado-Vazquez, G.; Zapater-Moros, A.; Diaz-Almiron, M.; Fortes, C.; Lopez-Vacas, R.; Marquez-Rodas, I.; Soria, A.; Fresno Vara, J. A.; Espinosa, E.

10.1101/198358 — cancer biology — Posted on 2017-10-06

1428 A novel zebrafish intestinal tumor model reveals a role for cyp7a1-dependent tumor-liver crosstalk in tumor's adverse effects on host

Enya, S.; Kawakami, K.; Suzuki, Y.; Kawaoka, S.

10.1101/199349 — cancer biology — Posted on 2017-10-06

1429 Pausing controls branching between productive and non-productive pathways during initial transcription

Dulin, D.; Bauer, D. L. V.; Malinen, A. M.; Bakermans, J. J. W.; Kaller, M.; Morichaud, Z.; Petushkov, I.; Depken, M.; Brodolin, K.; Kulbachinskiy, A.; Kapanidis, A. N.

10.1101/199307 — biophysics — Posted on 2017-10-06

1430 Single-cell transcriptome analysis identifies distinct cell types and intercellular niche signaling in a primary gastric organoid model

Chen, J.; Lau, B. T.; Andor, N.; Grimes, S. M.; Handy, C.; Wood-Bouwens, C.; Ji, H. P.

10.1101/190132 — genomics — Posted on 2017-10-06

1431 miR-128 inhibits telomerase activity by targeting TERT mRNA

Guzman, H.; Sanders, K.; Idica, A.; Bochnakian, A.; Jury, D.; Daugaard, I.; Zisoulis, D. G.; Pedersen, I.

10.1101/195198 — cancer biology — Posted on 2017-10-06

1432 Differential Brd4-bound enhancers drive critical sex differences in glioblastoma

Kfoury, N.; Qi, Z.; Yim, A. K. Y.; Berrett, K.; Sankararaman, S.; Broestl, L.; Chen, X.; Wilkinson, M.; Ippolito, J.; Gertz, J.; Mitra, R.; Rubin, J. B.

10.1101/199059 — genomics — Posted on 2017-10-05

1433 Enigmatic Diphyllatea eukaryotes: Culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution

Orr, R.; Zhao, S.; Klaveness, D.; Yabuki, A.; Ikeda, K.; Makoto, W.; Shalchian-Tabrizi, K.

10.1101/199125 — evolutionary biology — Posted on 2017-10-05

1434 Testing the role of the Red Queen and Court Jester as drivers of the macroevolution of Apollo butterflies

Condamine, F. L.; Rolland, J.; Hohna, S.; Sperling, F. A. H.; Sanmartin, I.

10.1101/198960 — evolutionary biology — Posted on 2017-10-05

1435 Defining the Layers of a Sensory Cilium with STORM and Cryo-Electron Nanoscopies

Robichaux, M. A.; Potter, V. L.; Zhang, Z.; He, F.; Schmid, M. F.; Wensel, T. G.

10.1101/198655 — cell biology — Posted on 2017-10-05

1436 Genomic MET amplification occurs early in NF1-related malignant peripheral nerve sheath tumor (MPNST) progression and is a potent therapeutic target

Peacock, J. D.; Pridgeon, M. G.; Tovar, E. A.; Essenburg, C. J.; Bowman, M. J.; Madaj, Z.; Koeman, J.; Grit, J.; Dodd, R. D.; Cardona, D. M.; Chen, M.; Kirsch, D.; Maina, F.; Dono, R.; Winn, M. E.; Graveel, C. R.; Steensma, M. R.

10.1101/199000 — cancer biology — Posted on 2017-10-05

1437 Maximum Entropy Methods for Extracting the Learned Features of Deep Neural Networks

Finnegan, A. I.; Song, J. S.

10.1101/105957 — bioinformatics — Posted on 2017-10-05

1438 CogStack - Experiences Of Deploying IntegratedInformation Retrieval And Extraction Services In A Large National Health Service Foundation Trust Hospital

Jackson, R.; Kartoglu, I. E.; Agrawal, A.; Lui, K.; Wu, H.; Groza, T.; Roberts, A.; Gorrell, G.; Song, X.; Lewsley, D.; Northwood, D.; Folarin, A.; Stringer, C.; Stewart, R.; Dobson, R.

10.1101/123299 — bioinformatics — Posted on 2017-10-05

1439 Sleep and the gut microbiome: antibiotic-induced depletion of the gut microbiota reduces nocturnal sleep in mice

Lendrum, J. E.; Seebach, B.; Klein, B.; Liu, S.

10.1101/199075 — animal behavior and cognition — Posted on 2017-10-05

1440 Computational model of brainstem circuit for state dependent control of hypoglossal motoneurons

Naji, M.; Komarov, M.; Krishnan, G.; Malhotra, A.; Powell, F.; Rukhadze, I.; Fenik, V.; Bazhenov, M.

10.1101/199117 — neuroscience — Posted on 2017-10-05

1441 Htz1 and Set1 Regulates Ergosterol Levels in Response to Environmental Stress

Aslan, K.; Ozaydin, B.

10.1101/199174 — molecular biology — Posted on 2017-10-05

1442 Immunological tolerance, pregnancy and pre-eclampsia: the roles of semen microbes and the father

Kenny, L. C.; Kell, D. B.

10.1101/198796 — microbiology — Posted on 2017-10-05

1443 Gestational low-protein intake enhances the whole kidney miR-192 and miR-200 family expression and epithelial-to-mesenchymal transition in adult male offspring

Sene, L. B.; Rizzi, V. H. G.; Gontijo, J. A. R.; Boer, P. A.

10.1101/199109 — developmental biology — Posted on 2017-10-05

1444 In the absence of apoptosis, myeloid cells arrest when deprived of growth factor, but remain viable without ATG5-dependent autophagy or uptake of glucose or glutamine.

Dong, L.; Reljic, B.; Lindqvist, L. M.; Vaux, D. L.; Tran, H.

10.1101/198754 — cell biology — Posted on 2017-10-05

1445 Phylostratigraphic analysis of tumor and developmental transcriptomes reveals relationship between oncogenesis, phylogenesis and ontogenesis

Zhou, J.; Cisneros, L.; Knijnenburg, T.; Trachana, K.; Davies, P.; Huang, S.

10.1101/199083 — cancer biology — Posted on 2017-10-05

1446 Oncogenic RAS-MET signal interactions are modulated by P53 status in NF1-related MPNSTs

Pridgeon, M. G.; Tovar, E. A.; Essenburg, C. J.; Madaj, Z.; Boguslawski, E. A.; Dischinger, P. S.; Peacock, J. D.; Maina, F.; Dono, R.; Winn, M. E.; Graveel, C. R.; Steensma, M. R.

10.1101/199026 — cancer biology — Posted on 2017-10-05

1447 Haystack: systematic analysis of the variation of epigenetic states and cell-type specific regulatory elements

Pinello, L.; Farouni, R.; Yuan, G.-C.

10.1101/199067 — bioinformatics — Posted on 2017-10-05

1448 Oomycetes during 120,000 years of temperate rainforest ecosystem development

Dickie, I. A.; Wakelin, A.; Martinez-Garcia, L.; Richardson, S. J.; Makiola, A.; Tylianakis, J. M.

10.1101/042341 — ecology — Posted on 2017-10-05

1449 Complex polymorphisms in endocytosis genes suggest alpha-cyclodextrin against metastases in breast cancer

Wittkowski, K. M.; Dadurian, C.; Seybold, M. P.; Kim, H. S.; Hoshino, A.; Lyden, D.

10.1101/152405 — cancer biology — Posted on 2017-10-05

1450 Control of Cardiac Mitochondrial Fuel Selection by Calcium

Kandel, S. M.; Dasika, S. K.; Dash, R. K.; Beard, D. A.

10.1101/198895 — biochemistry — Posted on 2017-10-05

1451 Spot dynamics in a reaction-diffusion model of plant root hair initiation

Avitabile, D.; Brena-Medina, V. F.; Ward, M. J.

10.1101/114876 — plant biology — Posted on 2017-10-05

1452 Defining the functional significance of intergenic transcribed regions

Lloyd, J. P.; Tsai, Z. T.- Y.; Sowers, R. P.; Panchy, N. L.; Shiu, S.-H.

10.1101/127282 — genomics — Posted on 2017-10-05

1453 Single-Cell Reprogramming Of Mouse Embryo Development Through A Critical Transition State

Tsuchiya, M.; Giuliani, A.; Yoshikawa, K.

10.1101/140913 — genomics — Posted on 2017-10-05

1454 Formation Of Dominant Mode By Evolution In Biological Systems

Furusawa, C.; Kaneko, K.

10.1101/125278 — biophysics — Posted on 2017-10-05

1455 Histone H3 threonine 11 phosphorylation is catalyzed directly by the meiosis-specific kinase Mek1 and provides a molecular readout of Mek1 activity in vivo

Kniewel, R.; Murakami, H.; Liu, Y.; Ito, M.; Ohta, K.; Hollingsworth, N. M.; Keeney, S.

10.1101/106245 — molecular biology — Posted on 2017-10-05

1456 Cell surface associated LapA of Pseudomonas fluorescens is anchored inside its Type-1 Secretion TolC-like Pore

Smith, T. J.; Sondermann, H.; O'Toole, G.

10.1101/198937 — microbiology — Posted on 2017-10-05

1457 Extremely rare variants reveal patterns of germline mutation rate heterogeneity in humans

Carlson, J.; Locke, A. E.; Flickinger, M.; Zawistowski, M.; Levy, S.; The BRIDGES Consortium, ; Myers, R. M.; Boehnke, M.; Kang, H. M.; Scott, L. J.; Li, J. Z.; Zöllner, S.

10.1101/108290 — genetics — Posted on 2017-10-05

1458 Cell Cycle Control by Nuclear Sequestration of CDC20 and CDH1 mRNA in Plant Stem Cells

Yang, W.; Wightman, R.; Meyerowitz, E. M.

10.1101/198978 — cell biology — Posted on 2017-10-05

1459 Allosteric Modulation of Conformational Dynamics in Human Hsp90α: A Computational Study

Penkler, D. L.; Atilgan, C.; Tastan Bishop, O.

10.1101/198341 — bioinformatics — Posted on 2017-10-05

1460 Drosophila Mutants that Are Motile but Respond Poorly to All Stimuli Tested

Vang, L. L.; Adler, J.

10.1101/066423 — animal behavior and cognition — Posted on 2017-10-05

1461 Paradoxical Associations Between Familial Affective Responsiveness, Stress, and Amygdala Reactivity

Farber, M. J.; Romer, A. L.; Kim, M. J.; Knodt, A. R.; Elsayed, N. M.; Williamson, D. E.; Hariri, A. R.

10.1101/169383 — neuroscience — Posted on 2017-10-05

1462 Genome-wide association study of social relationship satisfaction: significant loci and correlations with psychiatric conditions

Warrier, V.; the 23andMe Research Team, ; Bourgeron, T.; Baron-Cohen, S.

10.1101/196071 — genomics — Posted on 2017-10-05

1463 A descriptive marker gene-based approach to single-cell pseudotime trajectory learning

Campbell, K.; Yau, C.

10.1101/060442 — bioinformatics — Posted on 2017-10-05

1464 CRISPR/Cas9-mediated resistance to cauliflower mosaic virus

Liu, H.; Soyars, C.; Li, J.; Fei, Q.; He, G.; Peterson, B. A.; Meyers, B. C.; Nimchuk, Z. L.; Wang, X.

10.1101/191809 — plant biology — Posted on 2017-10-05

1465 The Proteus mirabilis rffG gene is essential for swarm-associated cell elongation through an Rcs-mediated pathway

Little, K.; Tipping, M. J.; Gibbs, K. A.

10.1101/198622 — microbiology — Posted on 2017-10-05

1466 Genetic study links components of the autonomous nervous system to heart-rate profile during exercise

Verweij, N.; van de Vegte, Y. J.; van der Harst, P.

10.1101/194167 — genetics — Posted on 2017-10-05

1467 Genome-wide Enhancer Maps Differ Significantly in Genomic Distribution, Evolution, and Function

Benton, M. L.; Talipineni, S. C.; Kostka, D.; Capra, J. A.

10.1101/176610 — genetics — Posted on 2017-10-05

1468 An epigenetic mechanism for cavefish eye degeneration

Gore, A.; Tomins, K.; Iben, J.; Ma, L.; Castranova, D.; Davis, A.; Parkhurst, A.; Jeffery, W.; Weinstein, B.

10.1101/199018 — evolutionary biology — Posted on 2017-10-05

1469 Cellular reconstitution of apoptotic cell clearance reveals a multi-step phosphorylation mechanism for Draper receptor triggering

Williamson, A. P.; Vale, R. D.

10.1101/198986 — cell biology — Posted on 2017-10-05

1470 Introducing prescribed biases in out of equilibrium Markov models

Dixit, P.

10.1101/198697 — biophysics — Posted on 2017-10-05

1471 Discriminability of numerosity-evoked fMRI activity patterns in human intra-parietal cortex reflects behavioral numerical acuity

Lasne, G.; Piazza, M.; Dehaene, S.; Kleinschmidt, A.; Eger, E.

10.1101/198002 — neuroscience — Posted on 2017-10-05

1472 Auranofin inhibits virulence in Pseudomonas aeruginosa

Tan, L. Z. W.; Hong, Z.; Yam, J. K. H.; Salido, M. M. S.; Woo, B. Y.; Li, S. F. Y.; Yang, L.; Givskov, M.; Chng, S.-S.

10.1101/198820 — microbiology — Posted on 2017-10-05

1473 Bayesian multiple logistic regression for meta-analyses of GWAS

Banerjee, S.; Zeng, L.; Schunkert, H.; Soeding, J.

10.1101/198911 — genetics — Posted on 2017-10-05

1474 Hox-logic of preadaptations for social insect symbiosis in rove beetles

Parker, J.; Eldredge, K. T.; Thomas, I.; Coleman, R.; Davis, S.

10.1101/198945 — evolutionary biology — Posted on 2017-10-05

1475 Immuno-phenotypes of Pancreatic Ductal Adenocarcinoma: Metaanalysis of transcriptional subtypes

de Santiago, I.; Yau, C.; Middleton, M.; Dustin, M.; Markowetz, F.; Sivakumar, S.

10.1101/198903 — cancer biology — Posted on 2017-10-05

1476 Correlation structure of grid cells is preserved during sleep

Gardner, R. J.; Lu, L.; Wernle, T.; Moser, M.-B.; Moser, E. I.

10.1101/198499 — neuroscience — Posted on 2017-10-05

1477 Modeling neuron-glia interactions with the Brian 2 simulator

Stimberg, M.; Goodman, D. F. M.; Brette, R.; De Pitta, M.

10.1101/198366 — neuroscience — Posted on 2017-10-05

1478 Occipital tACS bursts during a visual task impact ongoing neural oscillation power, coherence and LZW complexity

Castellano, M.; Ibanez-Soria, D.; Kroupi, E.; Acedo, J.; Campolo, M.; Martinez, X.; Soria-Frisch, A.; Valls-Sole, J.; Verma, A.; Ruffini, G.

10.1101/198788 — neuroscience — Posted on 2017-10-05

1479 Directed functional connectivity using dynamic graphical models

Schwab, S.; Harbord, R.; Zerbi, V.; Elliott, L.; Afyouni, S.; Smith, J. Q.; Woolrich, M. W.; Smith, S. M.; Nichols, T. E.

10.1101/198887 — neuroscience — Posted on 2017-10-05

1480 Grid cell co-activity patterns during sleep reflect spatial overlap of grid fields during active behaviors

Trettel, S. G.; Trimper, J. B.; Hwaun, E.; Fiete, I. R.; Colgin, L. L.

10.1101/198671 — neuroscience — Posted on 2017-10-05

1481 Neural oscillations during conditional associative learning

Clarke, A.; Roberts, B. M.; Ranganath, C.

10.1101/198838 — neuroscience — Posted on 2017-10-05

1482 Cell surface vimentin is involved in matrix stiffness-dependent infection of endothelial cells by Listeria monocytogenes

Bastounis, E. E.; Yeh, Y.-T.; Theriot, J. A.

10.1101/198739 — microbiology — Posted on 2017-10-05

1483 Symbiodinium genomes reveal adaptive evolution of functions related to symbiosis

Liu, H.; Stephens, T. G.; Gonzalez-Pech, R.; Beltran, V. H.; Lapeyre, B.; Bongaerts, P.; Cooke, I.; Bourne, D. G.; Foret, S.; Miller, D. J.; van Oppen, M. J. H.; Voolstra, C. R.; Ragan, M. A.; Chan, C. X.

10.1101/198762 — genomics — Posted on 2017-10-05

1484 Multiethnic Meta-analysis Identifies New Loci for Pulmonary Function

Wyss, A. B.; Sofer, T.; Lee, M. K.; Terzikhan, N.; Nguyen, J. N.; Lahousse, L.; Latourelle, J. C.; Smith, A. V.; Bartz, T. M.; Feitosa, M. F.; Gao, W.; Ahluwalia, T. S.; Tang, W.; Oldmeadow, C.; Duan, Q.; de Jong, K.; Wojczynski, M. K.; Wang, X.-Q.; Noordam, R.; Hartwig, F. P.; Jackson, V. E.; Wang, T.; Obeidat, M.; Hobbs, B. D.; Huan, T.; Kichaev, G.; Jin, J.; Graff, M.; Harris, T. B.; Kalhan, R.; Heckbert, S. R.; Paternoster, L.; Burkart, K. M.; Liu, Y.; Holliday, E. G.; Wilson, J. G.; Vonk, J. M.; Sanders, J.; Barr, R. G.; de Mutsert, R.; Baptista Menezes, A. M.; Adams, H. H. H.; van den Be

10.1101/196048 — genetics — Posted on 2017-10-05

1485 Molecular function limits divergent protein evolution on planetary timescales

Konate, M.; Plata, G.; Park, J.; Wang, H. H.; Vitkup, D.

10.1101/198663 — evolutionary biology — Posted on 2017-10-05

1486 Forward-reverse mutation cycles between stages of cancer development

Hu, T.; Kumar, Y.; Shazia, I.; Duan, S.-J.; Li, Y.; Chen, L.; Chen, J.-F.; Yin, R.; Kwong, A.; Leung, G. K.-K.; Mat, W.-K.; Wu, Z.; Long, X.; Chan, C.-H.; Lee, P.; Ng, S.-K.; Ho, T. Y. C.; Yang, J.; Ding, X.; Tsang, S.-Y.; Zhou, X.; Zhang, D.-H.; International Cancer Genome Consortium, ; Zhou, E.-X.; Xu, L.; Poon, W.-S.; Wang, H.-Y.; Xue, H.

10.1101/198309 — cancer biology — Posted on 2017-10-05

1487 Control of Cardiac Mitochondrial Fuel Selection by Calcium

Kandel, S. M.; Dasika, S. K.; Dash, R. K.; Beard, D. A.

10.1101/198895 — biochemistry — Posted on 2017-10-05

1488 The rate and potential relevance of new mutations in a colonizing plant lineage

Exposito-Alonso, M.; Becker, C.; Schuenemann, V. J.; Reiter, E.; Setzer, C.; Slovak, R.; Brachi, B.; Hagmann, J.; Grimm, D. G.; Jiahui, C.; Busch, W.; Bergelson, J.; Ness, R. W.; Krause, J.; Burbano, H. A.; Weigel, D.

10.1101/050203 — genomics — Posted on 2017-10-05

1489 Predicting microRNA targeting efficacy in Drosophila

Agarwal, V.; Subtelny, A. O.; Thiru, P.; Ulitsky, I.; Bartel, D. P.

10.1101/198689 — systems biology — Posted on 2017-10-05

1490 The VT GAL4, LexA, and split-GAL4 driver line collections for targeted expression in the Drosophila nervous system

Tirian, L.; Dickson, B.

10.1101/198648 — neuroscience — Posted on 2017-10-05

1491 Oscillatory Networks of High-Level Mental Alignment: A Perspective-Taking MEG Study

Seymour, R. A.; Wang, H.; Rippon, G.; Kessler, K.

10.1101/198747 — neuroscience — Posted on 2017-10-05

1492 A natural variant and an engineered mutation in a GPCR promote DEET resistance in C. elegans

Dennis, E. J.; Jin, X.; Dobosiewicz, M.; Duvall, L. B.; Hartman, P. S.; Bargmann, C. I.; Vosshall, L. B.

10.1101/198705 — neuroscience — Posted on 2017-10-05

1493 Hi-C deconvolution of a human gut microbiome yields high-quality draft genomes and reveals plasmid-genome interactions.

Press, M. O.; Wiser, A. H.; Kronenberg, Z. N.; Langford, K. W.; Shakya, M.; Lo, C.-C.; Mueller, K. A.; Sullivan, S. T.; Chain, P. S. G.; Liachko, I.

10.1101/198713 — genomics — Posted on 2017-10-05

1494 Genetic load and mutational meltdown in cancer cell populations

Zhang, Y.; Li, Y.; Zhu, T.; Shen, X.; Tao, Y.; Li, T.; Li, X.; Wang, D.; Ma, Q.; Hu, Z.; Liu, J.; Zheng, C.; Ruan, J.; Cai, J.; Wu, C.-I.; Wang, H.-Y.; Lu, X.

10.1101/193482 — evolutionary biology — Posted on 2017-10-05

1495 Control of Thiol-Maleimide Reaction Kinetics in PEG Hydrogel Networks

Jansen, L. E.; Negron-Pineiro, L.; Galarza, S.; Peyton, S.

10.1101/198135 — bioengineering — Posted on 2017-10-05

1496 Gene expression dynamics and inter-tissue recognition mechanisms during tissue fusion at the Arabidopsis graft junction

Melnyk, C. W.; Gabel, A.; Hardcastle, T. J.; Robinson, S.; Miyashima, S.; Grosse, I.; Meyerowitz, E. M.

10.1101/198598 — plant biology — Posted on 2017-10-05

1497 Allosteric Modulation of Conformational Dynamics in Human Hsp90?: A Computational Study

Penkler, D. L.; Atilgan, C.; Tastan Bishop, O.

10.1101/198341 — bioinformatics — Posted on 2017-10-04

1498 On a ‘failed’ attempt to manipulate conscious perception with transcranial magnetic stimulation to prefrontal cortex

Ruby, E.; Maniscalco, B.; Lau, H.; Peters, M. A. K.

10.1101/198218 — neuroscience — Posted on 2017-10-04

1499 A subcortical circuit linking the cerebellum to the basal ganglia engaged in vocal learning

Pidoux, L.; Leblanc, P.; Leblois, A.

10.1101/198317 — neuroscience — Posted on 2017-10-04

1500 Non-predictive online spatial coding in the posterior parietal cortex when aiming ahead for catching

Reid, S. A.; Dessing, J. C.

10.1101/197160 — neuroscience — Posted on 2017-10-04

1501 When Less is More: Enhanced Statistical Learning After Disruption of Bilateral DLPFC

Ambrus, G. G.; Janacsek, K.; Trimborn, A. B. C.; Kovacs, G.; Nemeth, D.

10.1101/198515 — neuroscience — Posted on 2017-10-04

1502 The Proteus mirabilis rffG gene is essential for swarm-associated cell elongation through an Rcs-mediated pathway

Little, K.; Tipping, M. J.; Gibbs, K.

10.1101/198622 — microbiology — Posted on 2017-10-04

1503 A Single Mechanosensitive Channel Protects Francisella tularensis subsp. holarctica from Hypoosmotic Shock and Promotes Survival in the Aquatic Environment.

Williamson, D. R.; Dewan, K. K.; Patel, T.; Wastella, C. M.; Ning, G.; Kirimanjeswara, G. S.

10.1101/198184 — microbiology — Posted on 2017-10-04

1504 Introduction of single nucleotide variations into the promoter region of the mouse kidney anion exchanger 1 gene downstream of a TATA box changes its transcriptional activity.

Takeuchi, T.; Hattori-Kato, M.

10.1101/198457 — genomics — Posted on 2017-10-04

1505 Individual differences in locomotor function predict the capacity to reduce asymmetry and modify the energetic cost of walking post-stroke

Sanchez, N.; Finley, J. M.

10.1101/197582 — physiology — Posted on 2017-10-04

1506 Platelet enrichment from whole blood in a clog-free microfluidic radial pillar device (RAPID)

Mehendale, N. D.; Sharma, O.; D'Costa, C.; Paul, D.

10.1101/197749 — physiology — Posted on 2017-10-04

1507 Identification of a Small Molecule Inhibitor of the Aminoglycoside 6’-N-Acetyltransferase Type Ib [AAC(6’)-Ib] Using Mixture-Based Combinatorial Libraries

Tran, T.; Chiem, K.; Jani, S.; Arivett, B.; Lin, D.; Lad, R.; Jimenez, V.; Farone, M.; Debevec, G.; Santos, R.; Giulianotti, M.; Pinilla, C.; Tolmasky, M.

10.1101/198176 — microbiology — Posted on 2017-10-04

1508 A set informative multiple autosomal markers for human identification: forensic research and population genetics analysis in a Chinese Xinjiang Hui group

Xie, T.; Guo, Y.; Chen, L.; Tai, Y.; Zhou, Y.; Fang, Y.; Qiu, P.; Zhu, B.

10.1101/197772 — genetics — Posted on 2017-10-04

1509 Genetic study links components of the autonomous nervous system to heart-rate profile during exercise

Verweij, N.; van de Vegte, Y. J.; van der Harst, P.

10.1101/194167 — genetics — Posted on 2017-10-04

1510 Second-order freeriding on antisocial punishment restores the effectiveness of prosocial punishment

Szolnoki, A.; Perc, M.

10.1101/198192 — evolutionary biology — Posted on 2017-10-04

1511 Improved management facilitates return of an iconic fish species

MacKenzie, B. R.; Aarestrup, K.; Christoffersen, M.; Payne, M. R.; Sorensen, C.; Lund, H. S.; Casini, M.

10.1101/197780 — ecology — Posted on 2017-10-04

1512 ECM cross-linking regulates invadopodia dynamics

Esmaeili Pourfarhangi, K.; Bergman, A.; Gligorijevic, B.

10.1101/198580 — cancer biology — Posted on 2017-10-04

1513 Immune-active microenvironment in small cell carcinoma of the ovary, hypercalcemic type: rationale for immune checkpoint blockade

Jelinic, P.; Ricca, J.; Van Oudenhove, E.; Olvera, N.; Merghoub, T.; Levine, D. A.; Zamarin, D.

10.1101/197970 — cancer biology — Posted on 2017-10-04

1514 Introducing prescribed biases in out of equilibrium Markov models

Dixit, P.

10.1101/198697 — biophysics — Posted on 2017-10-04

1515 Methods in Description and Validation of Local Metagenetic Microbial Communities

Molik, D. C.; Pfrender, M.; Emrich, S.

10.1101/198614 — bioinformatics — Posted on 2017-10-04

1516 The Object Space Task for mice and rats

Genzel, L.; Schut, E.; Schroeder, T.; Eichler, R.; Bayraktar, G.; Cornelisse, N.; Gareth, H.; Giuliani, F.; Gomez, A.; Hulzebos, S.; Igoli, J.; Loizou, S.; Navarro Lobato, I.; Nijssen, L.; Reinik, L.; Stoutjedijk, O.; Verheag, M.; Battaglia, F.

10.1101/198382 — animal behavior and cognition — Posted on 2017-10-04

1517 A longitudinal analysis of men’s intrasexual competitiveness, state anxiety, salivary testosterone, and salivary cortisol

Torrance, J.; Hahn, A.; Kandrik, M.; DeBruine, L.; Jones, B.

10.1101/198424 — animal behavior and cognition — Posted on 2017-10-04

1518 Evolving building blocks of rhythm: How human cognition creates music via cultural transmission

Ravignani, A.; Thompson, B.; Grossi, T.; Delgado, T.; Kirby, S.

10.1101/198390 — animal behavior and cognition — Posted on 2017-10-04

1519 Identification of Cancer-associated Metabolic Vulnerabilities by Modeling Multi-objective Optimality in Metabolism

Dai, Z.; Xu, L.; Hu, H.; Liao, K.; Deng, S.; Chen, Q.; Yang, S.; Wang, Q.; Gao, S.; Li, B.; Lai, L.

10.1101/198333 — systems biology — Posted on 2017-10-04

1520 A unified web platform for network-based analyses of genomic data

Li, T.; Kim, A.; Mercer, J.; Rosenbluh, J.; Horn, H.; Greenfeld, L.; An, D.; Zimmer, A.; Liberzon, A.; Bistline, J.; Natoli, T.; Li, Y.; Tsherniak, A.; Narayan, R.; Subramanian, A.; Liefeld, T.; Wong, B.; Thompson, D.; Calvo, S.; Carr, S.; Boehm, J.; Jaffe, J.; Mesirov, J.; Hacohen, N.; Regev, A.; Lage, K.

10.1101/196303 — genomics — Posted on 2017-10-04

1521 NDC80 clustering modulates microtubule dynamics under force

Volkov, V. A.; Huis in 't Veld, P. J.; Dogterom, M.; Musacchio, A.

10.1101/198291 — biophysics — Posted on 2017-10-04

1522 Evolution-informed forecasting of seasonal influenza A (H3N2)

Du, X.; King, A. A.; Woods, R. J.; Pascual, M.

10.1101/198168 — systems biology — Posted on 2017-10-04

1523 Ixodes scapularis does not harbor a stable midgut microbiome

Ross, B. D.; Hayes, B.; Radey, M. C.; Lee, X.; Josek, T.; Bjork, J.; Neitzel, D.; Paskewitz, S.; Chou, S.; Mougous, J. D.

10.1101/198267 — microbiology — Posted on 2017-10-04

1524 Disruption of dual zygotic spindle assembly shows epigenetic asymmetry to be chromosome intrinsic

Reichmann, J.; Nijmeijer, B.; Hossain, M. J.; Eguren, M.; Schneider, I.; Politi, A. Z.; Roberti, M. J.; Hufnagel, L.; Hiiragi, T.; Ellenberg, J.

10.1101/198275 — cell biology — Posted on 2017-10-04

1525 The miR-96/RARγ signaling axis governs androgen signaling and PCa progression

Long, M. D.; Singh, P. K.; Russell, J. R.; Llimos, G.; Rosario, S.; Rizvi, A.; Withers, H.; van den Berg, P. R.; Kirk, J.; Sucheston-Campbell, L. E.; Smiraglia, D. J.; Campbell, M. J.

10.1101/198465 — cancer biology — Posted on 2017-10-04

1526 Getting in shape and swimming: the role of cortical forces and membrane heterogeneity in eukaryotic cells

Wu, H.; Ponce de Leon, M. A.; Othmer, H.

10.1101/198523 — biophysics — Posted on 2017-10-04

1527 The Elastic Network Contact Model applied to RNA: enhanced accuracy for conformational space prediction

Mailhot, O.; Frappier, V.; Major, F.; Najmanovich, R.

10.1101/198531 — bioinformatics — Posted on 2017-10-04

1528 Shearing in flow environment promotes evolution of social behavior in microbial populations

Uppal, G.; Vural, D.

10.1101/198507 — bioinformatics — Posted on 2017-10-04

1529 Temporal profiling of redox-dependent heterogeneity in single cells

Radzinski, M.; Fassler, R.; Yogev, O.; Breuer, W.; Gutin, J.; Ravid, T.; Friedman, N.; Schuldiner, M.; Shai, N.; Reichmann, D.

10.1101/198408 — biochemistry — Posted on 2017-10-04

1530 Enabling Precision Medicine via standard communication of NGS provenance, analysis, and results

Alterovitz, G.; Dean, D. A.; Goble, C.; Crusoe, M. R.; Soiland-Reyes, S.; Bell, A.; Hayes, A.; King, C. H. S.; Johanson, E.; Thompson, E. E.; Donaldson, E.; Tsang, H. S.; Goecks, J.; Almeida, J. S.; Guo, L.; Walderhaug, M.; Walsh, P.; Kahsay, R.; Bloom, T.; Lai, Y.; Simonyan, V.; Mazumder, R.

10.1101/191783 — scientific communication and education — Posted on 2017-10-04

1531 Vegetative compatibility groups explain variation in the virulence of Verticillium dahliae on strawberry

Fan, R.; Cockerton, H.; Armitage, A. D.; Bates, H.; Cascant-Lopez, E.; Antanaviciute, L.; Xu, X.; Hu, X.; Harrison, R. J.

10.1101/181172 — plant biology — Posted on 2017-10-04

1532 A circadian clock in the blood-brain barrier regulates xenobiotic efflux from the brain

Zhang, S. L.; Yue, Z.; Arnold, D. M.; Sehgal, A.

10.1101/196956 — neuroscience — Posted on 2017-10-04

1533 R-spondins can potentiate WNT signaling without LGR receptors

Lebensohn, A. M.; Rohatgi, R.

10.1101/198572 — developmental biology — Posted on 2017-10-04

1534 Genomic binding dynamics of PBAF are regulated via select chromatin states

Kenworthy, C. A.; Wong, V.; Dziuba, P.; Lavis, L. D.; Liu, W.-L.; Singer, R. H.; Coleman, R. A.

10.1101/111674 — cell biology — Posted on 2017-10-04

1535 Modern machine learning outperforms GLMs at predicting spikes

Benjamin, A. S.; Fernandes, H. L.; Tomlinson, T.; Ramkumar, P.; VerSteeg, C.; Chowdhury, R.; Miller, L.; Kording, K. P.

10.1101/111450 — neuroscience — Posted on 2017-10-04

1536 A Multimodal Strategy Used By A Large c-di-GMP Network

Dahlstrom, K.; Collins, A.; Doing, G.; Taroni, J.; Gauvin, T.; Greene, C.; Hogan, D.; O'Toole, G.

10.1101/198481 — microbiology — Posted on 2017-10-04

1537 An unbiased reconstruction of the T helper cell type 2 differentiation network

Henriksson, J.; Chen, X.; Gomes, T.; Miragaia, R.; Ullah, U.; Pramanik, J.; Meyer, K.; Yusa, K.; Lahesmaa, R.; Teichmann, S. A.

10.1101/196022 — immunology — Posted on 2017-10-04

1538 Phenotype-specific information improves prediction of functional impact for noncoding variants

Bodea, C. A.; Mitchell, A. A.; Day-Williams, A. G.; Runz, H.; Sunyaev, S. R.

10.1101/083642 — genomics — Posted on 2017-10-04

1539 The interface of malignant and immunologic clonal dynamics in high-grade serous ovarian cancer

Zhang, A. W.; McPherson, A.; Milne, K.; Kroeger, D. R.; Hamilton, P. T.; Miranda, A.; Funnell, T.; Laan, S.; Cochrane, D. R.; Lim, J. L. P.; Yang, W.; Roth, A.; Smith, M. A.; de Souza, C.; Ho, J.; Tse, K.; Zeng, T.; Shlafman, I.; Mayo, M. R.; Moore, R.; Failmezger, H.; Heindl, A.; Wang, Y. K.; Bashashati, A.; Brown, S. D.; Lai, D.; Wan, A. N. C.; Nielsen, C. B.; Bouchard-Cote, A.; Yuan, Y.; Wasserman, W. W.; Gilks, C. B.; Karnezis, A. N.; Aparicio, S.; McAlpine, J. N.; Huntsman, D. G.; Holt, R. A.; Nelson, B. H.; Shah, S. P.

10.1101/198101 — cancer biology — Posted on 2017-10-04

1540 Scopoletin 8-hydroxylase: a novel enzyme involved in coumarin biosynthesis and iron-deficiency responses in Arabidopsis

Siwinska, J.; Wcisla, K.; Olry, A.; Grosjean, J.; Hehn, A.; Bourgaud, F.; Meharg, A.; Carey, M.; Lojkowska, E.; Ihnatowicz, A.

10.1101/197806 — plant biology — Posted on 2017-10-04

1541 SWEET11 and 15 as key players in seed filling in rice

Yang, J.; Luo, D.; Yang, B.; Frommer, W.; Eom, J.-S.

10.1101/198325 — plant biology — Posted on 2017-10-04

1542 The cohesin ring uses its hinge to organize DNA using non-topological as well as topological mechanisms

Srinivasan, M.; Scheinost, J.; Petela, N.; Gligoris, T.; Wissler, M.; Ogushi, S.; Collier, J.; Voulgaris, M.; Kurze, A.; Chan, K.-L.; Hu, B.; Costanzo, V.; Nasmyth, K.

10.1101/197848 — molecular biology — Posted on 2017-10-04

1543 Interactions of pathogenic and commensal strains of Mannheimia haemolytica with differentiated bovine airway epithelial cells grown at an air-liquid interface

Cozens, D.; Sutherland, E.; Lauder, M.; Taylor, G.; Berry, C. C.; Davies, R. L.

10.1101/197947 — microbiology — Posted on 2017-10-04

1544 Root type and soil phosphate determine the taxonomic landscape of colonizing fungi and the transcriptome of field-grown maize roots

Yu, P.; Wang, C.; Baldauf, J.; Tai, H.; Gutjahr, C.; Hochholdinger, F.; Li, C.

10.1101/198283 — microbiology — Posted on 2017-10-04

1545 Linking nitrogen load to the structure and function of wetland soil and rhizosphere microbial communities

Hester, E. R.; Harpenslager, S. F.; van Diggelen, J. M. H.; Lamers, L. L.; Jetten, M. S. M.; Luke, C.; Lucker, S.; Welte, C. U.

10.1101/197855 — microbiology — Posted on 2017-10-04

1546 Genome-wide Association Study Links APOEϵ4 and BACE1 Variants with Plasma Amyloid β Levels

10.1101/194266 — genetics — Posted on 2017-10-04

1547 Comparison of RNA-seq and Microarray Platforms for Splice Event Detection using a Cross-Platform Algorithm

Romero, J. P.; Ortiz-Estevez, M.; Muniategui, A.; Carrancio, S.; de Miguel, F. J.; Carazo, F.; Montuenga, L. M.; Loos, R.; Pio, R.; Trotter, M. W. B.; Rubio, A.

10.1101/197798 — bioinformatics — Posted on 2017-10-04

1548 An Algorithmic Information Calculus for Causal Discovery and Reprogramming Systems

Zenil, H.; Kiani, N. A.; Marabita, F.; Deng, Y.; Elias, S.; Schmidt, A.; Ball, G.; Tegner, J.

10.1101/185637 — systems biology — Posted on 2017-10-04

1549 Using Connectivity To Identify Climatic Drivers Of Local Adaptation

Macdonald, S. L.; Llewelyn, J.; Phillips, B.

10.1101/145169 — evolutionary biology — Posted on 2017-10-04

1550 Pan-arthropod analysis reveals somatic piRNAs as an ancestral defence against transposable elements

Lewis, S. H.; Quarles, K. A.; Yang, Y.; Tanguy, M.; Frezal, L.; Smith, S. A.; Sharma, P. P.; Cordaux, R.; Gilbert, C.; Giraud, I.; Collins, D. H.; Zamore, P. D.; Miska, E. A.; Sarkies, P.; Jiggins, F. M.

10.1101/185694 — evolutionary biology — Posted on 2017-10-04

1551 LITE microscopy: a technique for high numerical aperture, low photobleaching fluorescence imaging

Fadero, T. C.; Gerbich, T. M.; Rana, K.; Suzuki, A.; DiSalvo, M.; Schaefer, K. N.; Heppert, J. K.; Boothby, T. C.; Goldstein, B.; Peifer, M.; Allbritton, N. L.; Gladfelter, A. S.; Maddox, A. S.; Maddox, P. S.

10.1101/181644 — cell biology — Posted on 2017-10-04

1552 iREAD: A Tool For Intron Retention Detection From RNA-seq Data

Li, H.-D.; Funk, C. C.; Price, N. D.

10.1101/135624 — bioinformatics — Posted on 2017-10-04

1553 Abundance-based reconstitution of microbial pan-genomes from whole-metagenome shotgun sequencing data

Plaza Onate, F.; Cervino, A. C. L.; Magoules, F.; Ehrlich, S. D.; Pichaud, M.

10.1101/173203 — bioinformatics — Posted on 2017-10-04

1554 Re-evaluating inheritance in genome evolution: widespread transfer of LINEs between species

Ivancevic, A.; Kortschak, D.; Bertozzi, T.; Adelson, D.

10.1101/106914 — evolutionary biology — Posted on 2017-10-04

1555 Association theory: a new framework for analyzing social evolution

Gilbert, O. M.

10.1101/197632 — evolutionary biology — Posted on 2017-10-04

1556 ZMPSTE24 Missense Mutations that Cause Progeroid Diseases Decrease Prelamin A Cleavage Activity, Protein Stability, or Both

Spear, E.; Hsu, E.-T.; Nie, L.; Carpenter, E. P.; Hrycyna, C.; Michaelis, S.

10.1101/198069 — cell biology — Posted on 2017-10-04

1557 LITE microscopy: a technology for high numerical aperture, low photobleaching fluorescence imaging

10.1101/181644 — cell biology — Posted on 2017-10-04

1558 A Novel Uropathogenic Escherichia Coli Genome (strain D3) and Comparative Analysis with Other Uropathogenic and Nonpathogenic Strains

Nadel, B. B.; Cokus, S. J.; Morselli, M.; Marinelli, L. J.; Modlin, R. L.; Distefano, J.; Pellegrini, M.

10.1101/197533 — pathology — Posted on 2017-10-04

1559 Defining subtypes of autism spectrum disorder using static and dynamic functional connectivity

Easson, A. K.; Fatima, Z.; McIntosh, A. R.

10.1101/198093 — neuroscience — Posted on 2017-10-04

1560 Native and engineered clifednamide biosynthesis in multiple Streptomyces spp.

Qi, Y.; Ding, E.; Blodgett, J.

10.1101/197616 — synthetic biology — Posted on 2017-10-03

1561 Cerebellar learning using perturbations

Bouvier, G.; Aljadeff, J.; Clopath, C.; Bimbard, C.; Nadal, J.-P.; Brunel, N.; Hakim, V.; Barbour, B.

10.1101/053785 — neuroscience — Posted on 2017-10-03

1562 Extensive Regulatory Changes in Genes Affecting Vocal and Facial Anatomy Separate Modern from Archaic Humans

Gokhman, D.; Agranat-Tamir, L.; Housman, G.; Garcia-Perez, R.; Nissim-Rafinia, M.; Mallick, S.; Nieves-Colon, M.; Li, H.; Alpaslan-Roodenberg, S.; Novak, M.; Gu, H.; Ferrando-Bernal, M.; Gelabert, P.; Lipende, I.; Kondova, I.; Bontrop, R.; Quillen, E. E.; Meissner, A.; Stone, A. C.; Pusey, A. E.; Mjungu, D.; Kandel, L.; Liebergall, M.; Prada, M. E.; Vidal, J. M.; Prüfer, K.; Krause, J.; Yakir, B.; Pääbo, S.; Pinhasi, R.; Lalueza-Fox, C.; Reich, D.; Marques-Bonet, T.; Meshorer, E.; Carmel, L.

10.1101/106955 — evolutionary biology — Posted on 2017-10-03

1563 Revisiting the erythroid-myeloid lineage decision - a data-driven dynamical model analysis

Teles, J.; Olariu, V.; Peterson, C.

10.1101/197822 — systems biology — Posted on 2017-10-03

1564 Predictive Coding of Novel versus Familiar Stimuli in the Primary Visual Cortex

Homann, J.; Koay, S. A.; Glidden, A. M.; Tank, D. W.; Berry, M. J.

10.1101/197608 — neuroscience — Posted on 2017-10-03

1565 RhoGEF9 splice isoforms influence neuronal maturation and synapse formation downstream of a2 GABAA receptors

deGroot, C.; Floriou-Servou, A.; Tsai, Y.-C.; Frueh, S.; Kohler, M.; Parkin, G.; Schwerdel, C.; Bosshard, G.; Kaila, K.; Fritschy, J.-M.; Tyagarajan, S.

10.1101/197905 — neuroscience — Posted on 2017-10-03

1566 The cohesin ring uses its hinge to organize DNA using non-topological as well as topological mechanisms

Srinivasan, M.; Scheinost, J.; Petela, N.; Gligoris, T.; Wissler, M.; Ogushi, S.; Collier, J.; Voulgaris, M.; Kurze, A.; Chan, K.-L.; Hu, B.; Costanzo, V.; Nasmyth, K.

10.1101/197848 — molecular biology — Posted on 2017-10-03

1567 Allele-specific editing of rhodopsin P23H knock-in mice broadens therapeutic potential of CRISPR/Cas for dominant genetic diseases

Li, P.; Kleinstiver, B. P.; Leon, M. Y.; Prew, M. S.; Navarro-Gomez, D.; Greenwald, S. H.; Pierce, E. A.; Joung, J. K.; Liu, Q.

10.1101/197962 — genetics — Posted on 2017-10-03

1568 Mitochondrial Methylation Two-Peak Profile Absent in Parkinson's Disease Patient

Valente, A. X. C. N.; Liao, Q.; Rohkin, G.; Bouca-Machado, R.; Guedes, L. C.; Ferreira, J. J.; Lee, S. M.-Y.

10.1101/197731 — cell biology — Posted on 2017-10-03

1569 Predicting cancer outcomes from histology and genomics using convolutional networks

Mobadersany, P.; Yousefi, S.; Amgad, M.; Gutman, D. A.; Barnholtz-Sloan, J. S.; Velazquez Vega, J. E.; Brat, D. J.; Cooper, L. A. D.

10.1101/198010 — bioinformatics — Posted on 2017-10-03

1570 Diet predicts milk composition in primates

Blomquist, G. E.; Hinde, K.; Milligan Newmark, L. A.

10.1101/197004 — zoology — Posted on 2017-10-03

1571 A blueprint for human whole-cell modeling

Szigeti, B.; Roth, Y. D.; Sekar, J. A. P.; Goldberg, A. P.; Pochiraju, S. C.; Karr, J. R.

10.1101/198044 — systems biology — Posted on 2017-10-03

1572 Impaired phloem loading in genome-edited triple knock-out mutants of SWEET13 sucrose transporters

Frommer, W.; Bezrutczyk, M.; Hartwig, T.; Horschman, M.; Char, S. N.; Yang, J.; Yang, B.; Sosso, D.

10.1101/197921 — plant biology — Posted on 2017-10-03

1573 Single-exposure visual memory judgments are reflected in IT cortex

Meyer, T.; Rust, N. C.

10.1101/197764 — neuroscience — Posted on 2017-10-03

1574 The experience of vivid autobiographical reminiscence is supported by personal semantic representations in the precuneus

Sreekumar, V.; Nielson, D. M.; Smith, T. A.; Dennis, S. J.; Sederberg, P. B.

10.1101/197665 — neuroscience — Posted on 2017-10-03

1575 Mechanisms underlying serotonergic excitation of callosal projection neurons

Stephens, E. K.; Baker, A. L.; Gulledge, A. T.

10.1101/197624 — neuroscience — Posted on 2017-10-03

1576 A Feed-forward Relay between Bicoid and Orthodenticle Regulates the Timing ofEmbryonic Patterning in Drosophila

Datta, R.; Ling, J.; Kurland, J.; Ren, X.; Zhe, X.; Yucel, G.; Moore, J.; Shokri, L.; Baker, I.; Bishop, T.; Struffi, P.; Levina, R.; Bulyk, M.; Johnston, R.; Small, S.

10.1101/198036 — molecular biology — Posted on 2017-10-03

1577 Editing of the Human TRIM5 Gene to Introduce Mutations with the Potential to Inhibit HIV-1

Dufour, C.; Claudel, A.; Joubarne, N.; Merindol, N.; Maisonnet, T.; Plourde, M. B.; Berthoux, L.

10.1101/185298 — microbiology — Posted on 2017-10-03

1578 Temporal differentiation of bovine airway epithelial cells grown at an air-liquid interface

Cozens, D.; Sutherland, E.; Marchesi, F.; Taylor, G.; Berry, C. C.; Davies, R. L.

10.1101/197814 — microbiology — Posted on 2017-10-03

1579 Interactions of pathogenic and commensal strains of Mannheimia haemolytica with differentiated bovine airway epithelial cells grown at an air-liquid interface

Cozens, D.; Sutherland, E.; Lauder, M.; Taylor, G.; Berry, C. C.; Davies, R. L.

10.1101/197947 — microbiology — Posted on 2017-10-03

1580 RES complex is associated with intron definition and required for zebrafish early embryogenesis

Fernandez, J.; Moreno-Mateos, M.; Gohr, A.; Chan, S.; Irimia, M.; Giraldez, A.

10.1101/197939 — genomics — Posted on 2017-10-03

1581 Comparative analysis of the genomes of Stylophora pistillata and Acropora digitifera provides evidence for extensive differences between species of corals

Voolstra, C. R.; Li, Y.; Liew, Y. J.; Baumgarten, S.; Zoccola, D.; Flot, J.-F.; Tambutte, S.; Allemand, D.; Aranda, M.

10.1101/197830 — genomics — Posted on 2017-10-03

1582 Profiling and leveraging relatedness in a precision medicine cohort of 92,455 exomes

Staples, J.; Maxwell, E. K.; Gosalia, N.; Gonzaga-Jauregui, C.; Snyder, C.; Hawes, A.; Penn, J.; Ulloa, R.; Bai, X.; Lopez, A. E.; Van Hout, C. V.; O'Dushlaine, C.; Teslovich, T. M.; McCarthy, S. E.; Balasubramanian, S.; Kirchner, H. L.; Leader, J. B.; Murray, M. F.; Ledbetter, D. H.; Shuldiner, A. R.; Yancoupolos, G.; Dewey, F. E.; Carey, D. J.; Overton, J. D.; Baras, A.; Habegger, L.; Reid, J. G.

10.1101/197889 — genomics — Posted on 2017-10-03

1583 Independent erosion of conserved transcription factor binding sites points to shared hindlimb, vision, and scrotum loss in different mammals

Berger, M. J.; Wenger, A. M.; Guturu, H.; Bejerano, G.

10.1101/197756 — evolutionary biology — Posted on 2017-10-03

1584 Networks of genetic similarity reveal non-neutral processes shape strain structure in Plasmodium falciparum

He, Q.; Pilosof, S.; Tiedje, K. E.; Ruybal-Pesantez, S.; Artzy-Randrup, Y.; Baskerville, E. B.; Day, K.; Pascual, M.

10.1101/197954 — ecology — Posted on 2017-10-03

1585 Classification and Mutation Prediction from Non-Small Cell Lung Cancer Histopathology Images using Deep Learning

Coudray, N.; Moreira, A. L.; Sakellaropoulos, T.; Fenyo, D.; Razavian, N.; Tsirigos, A.

10.1101/197574 — cancer biology — Posted on 2017-10-03

1586 NGSphy: phylogenomic simulation of next-generation sequencing data

Escalona, M.; Rocha, S.; Posada, D.

10.1101/197715 — bioinformatics — Posted on 2017-10-03

1587 Association Analysis and Meta-Analysis of Multi-allelic Variants for Large Scale Sequence Data

Zhan, X.; Chen, S.; Jiang, Y.; Liu, M.; Iacono, W. G.; Hewitt, J. K.; Hokanson, J. E.; Krauter, K.; Laakso, M.; Li, K. W.; Lutz, S. M.; McGue, M.; Pandit, A.; Zajac, G. J.; Boehnke, M.; Abecasis, G. R.; Jiang, B.; Vrieze, S. I.; Liu, D. J.

10.1101/197913 — bioinformatics — Posted on 2017-10-03

1588 Comparison of RNA-seq and Microarray Platforms for Splice Event Detection using a Cross-Platform Algorithm

Romero, J. P.; Ortiz-Estevez, M.; Muniategui, A.; Carrancio, S.; de Miguel, F. J.; Carazo, F.; Montuenga, L. M.; Loos, R.; Pio, R.; Trotter, M. W. B.; Rubio, A.

10.1101/197798 — bioinformatics — Posted on 2017-10-03

1589 Comparative Transcriptomics of Mango (Mangifera indica L.) Cultivars Provide Insights of Biochemical Pathways Involved in Flavor and Color

Khan, W.; Razzak, S. A.; Azim, M. K.

10.1101/196881 — bioinformatics — Posted on 2017-10-03

1590 Females prefer cooperative males even when cooperative behavior is unobserved: evidence from the mound-building mouse, Mus spicilegus

Tognetti, A.; Raymond, M.; Ganem, G.; Faurie, C.

10.1101/197988 — animal behavior and cognition — Posted on 2017-10-03

1591 A mechanism for prime-realignment during influenza A virus replication

Oymans, J.; te Velthuis, A.

10.1101/138487 — microbiology — Posted on 2017-10-03

1592 bigSCale: An Analytical Framework for Big-Scale Single-Cell Data

Iacono, G.; Mereu, E.; Guillaumet-Adkins, A.; Corominas, R.; Cusco, I.; Rodriguez-Esteban, G.; Gut, M.; Perez-Jurado, L. A.; Gut, I.; Heyn, H.

10.1101/197244 — genomics — Posted on 2017-10-03

1593 Separating an allele associated with late flowering and slow maturation of Arabidopsis thaliana from population structure

Zan, Y.; Feng, X.; Ning, Z.; Xu, W.; Wan, Q.; Zeng, D.; Zeng, Z.; Liu, Y.; Shen, X.

10.1101/193417 — genetics — Posted on 2017-10-03

1594 FastViromeExplorer: A Pipeline for Virus and Phage Identification and Abundance Profiling in Metagenomics Data

Tithi, S. S.; Jensen, R. V.; Zhang, L.

10.1101/196998 — bioinformatics — Posted on 2017-10-03

1595 Methods in field chronobiology

Dominoni, D.; Akesson, S.; Klaassen, R.; Spoelstra, K.; Bulla, M.

10.1101/197541 — animal behavior and cognition — Posted on 2017-10-03

1596 Coexistence of multiple endemic and pandemic lineages of the rice blast pathogen

Gladieux, P.; Ravel, S.; Rieux, A.; Cros-Arteil, S.; Adreit, H.; Milazzo, J.; Thierry, M.; Fournier, E.; Terauchi, R.; Tharreau, D.

10.1101/179895 — evolutionary biology — Posted on 2017-10-03

1597 IRF4 haploinsufficiency in a family with Whipples disease

Guerin, A.; Kerner, G.; Marr, N.; Markle, J. G.; Fenollar, F.; Wong, N.; Boughorbel, S.; Avery, D. T.; Ma, C.; Bougarn, S.; Bouaziz, M.; Beziat, V.; Della Mina, E.; Lazarovt, T.; Worley, L.; Nguyen, T.; Patin, E.; Deswarte, C.; Martinez-Barricarte, R.; Boucherit, S.; Ayral, X.; Edouard, S.; Boisson-Dupuis, S.; Rattina, V.; Bigio, B.; Vogt, G.; Geissmann, F.; Quintana-Murci, L.; Chaussabel, D.; Tangye, S.; Raoult, D.; Abel, L.; Bustamante, J.; Casanova, J.-L.

10.1101/197145 — immunology — Posted on 2017-10-03

1598 Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics

Barbeira, A. N.; Dickinson, S. P.; Torres, J. M.; Bonazzola, R.; Zheng, J.; Torstenson, E. S.; Wheeler, H. E.; Shah, K. P.; Edwards, T.; Garcia, T.; GTEx Consortium, ; Nicolae, D.; Cox, N. J.; Im, H. K.

10.1101/045260 — genomics — Posted on 2017-10-03

1599 Native and engineered clifednamide biosynthesis in multiple Streptomyces spp.

Qi, Y.; Ding, E.; Blodgett, J.

10.1101/197616 — synthetic biology — Posted on 2017-10-03

1600 Identifying developmentally important genes with single-cell RNA-seq from an embryo

Ilsley, G. R.; Suyama, R.; Noda, T.; Satoh, N.; Luscombe, N. M.

10.1101/197699 — developmental biology — Posted on 2017-10-03

1601 Chromatin Organization by an Interplay of Loop Extrusion and Compartmental Segregation

Nuebler, J.; Fudenberg, G.; Imakaev, M.; Abdennur, N.; Mirny, L.

10.1101/196261 — biophysics — Posted on 2017-10-03

1602 Development of an integrated genomic map for a threatened Caribbean coral (Orbicella faveolata)

Snelling, J.; Dziedzic, K.; Guermond, S.; Meyer, E.

10.1101/183467 — genomics — Posted on 2017-10-03

1603 Selection in response to community diversity alters plant performance and functional traits

van Moorsel, S. J.; Schmid, M. W.; Hahl, T.; Zuppinger-Dingley, D.; Schmid, B.

10.1101/158709 — ecology — Posted on 2017-10-03

1604 Structural Basis for Katanin Self-Assembly

Nithiananatham, S.; McNally, F.; Al-Bassam, J.

10.1101/197558 — biochemistry — Posted on 2017-10-03

1605 OnACID: Online Analysis of Calcium Imaging Data in Real Time

Giovannucci, A.; Friedrich, J.; Kaufman, M.; Churchland, A. K.; Chklovskii, D.; Paninski, L.; Pnevmatikakis, E. A.

10.1101/193383 — neuroscience — Posted on 2017-10-02

1606 Dissociable signatures of visual salience and behavioral relevance across attentional priority maps in human cortex

Sprague, T.; Itthipuripat, S.; Vo, V.; Serences, J. T.

10.1101/196642 — neuroscience — Posted on 2017-10-02

1607 Genetic Analysis of Deep Phenotyping Projects in Common Disorders

Gershon, E. S.; Pearlson, G.; Keshavan, M. S.; Tamminga, C.; Clementz, B.; Buckley, P. F.; Alliey-Rodriguez, N.; Liu, C.; Sweeney, J. A.; Keedy, S.; Meda, S.; Tandon, N.; Shafee, R.; Bishop, J. R.; Ivleva, E. I.

10.1101/197459 — genetics — Posted on 2017-10-02

1608 Genome-wide homology analysis reveals new insights into the origin of the wheat B genome

Zhang, W.; Zhang, M.; Zhu, X.; Cao, Y.; Sun, Q.; Ma, G.; Chao, S.; Yan, C.; Xu, S.; Cai, X.

10.1101/197640 — genetics — Posted on 2017-10-02

1609 Atg8 is essential specifically for an autophagy-independent function in apicoplast biogenesis in blood-stage malaria parasites

Walczak, M.; Ganesan, S. M.; Niles, J. C.; Yeh, E.

10.1101/195578 — cell biology — Posted on 2017-10-02

1610 Fibroblasts from metastatic sites induce broad-spectrum drug desensitization via modulation of mitochondrial priming

Landry, B. D.; Leete, T.; Richards, R.; Cruz-Gordillo, P.; Ren, G.; Schwartz, A. D.; Peyton, S. R.; Lee, M. J.

10.1101/197376 — cancer biology — Posted on 2017-10-02

1611 MreB Filaments Create Rod Shape By Aligning Along Principal Membrane Curvature.

Hussain, S.; Wivagg, C. N.; Szwedziak, P.; Wong, F.; Schaefer, K.; Izore, T.; Renner, L. D.; Sun, Y.; Bisson Filho, A. W.; Walker, S.; Amir, A.; Lowe, J.; GARNER, E. C.

10.1101/197475 — microbiology — Posted on 2017-10-02

1612 Reverse Association Of Single Cells To Rheumatoid Arthritis Accounting For Mixed Effects Identifies An Expanded CD27- HLA-DR+ Effector Memory CD4+ T Cell Population

Fonseka, C. Y.; Rao, D. A.; Teslovich, N. C.; Hannes, S. K.; Slowikowski, K.; Gurish, M. F.; Donlin, L. T.; Weinblatt, M. E.; Massarotti, E. M.; Coblyn, J. S.; Helfgott, S. M.; Todd, D. J.; Bykerk, V. P.; Karlson, E. W.; Ermann, J.; Lee, Y. C.; Brenner, M. B.; Raychaudhuri, S.

10.1101/172403 — bioinformatics — Posted on 2017-10-02

1613 MICCS: A Fully Programmable Multipurpose Integrated Cell Culture System

Kassis, T.; Perez, P. M.; Yang, C. J. W.; Soenksen, L. R.; Trumper, D. L.; Griffith, L. G.

10.1101/192047 — bioengineering — Posted on 2017-10-02

1614 Conditional Robust Calibration (CRC): a new computational Bayesian methodology for model parameters estimation and identifiability analysis

Bianconi, F.; Tomassoni, L.; Antonini, C.; Valigi, P.

10.1101/197400 — systems biology — Posted on 2017-10-02

1615 Novel Compensatory Mechanisms Enable the Mutant KCNT1 Channels to Induce Seizures

Ehaideb, S.; Decker, G.; Smith, P.; Davis, D.; Zhang, B.

10.1101/191171 — neuroscience — Posted on 2017-10-02

1616 Biomechanics of the peafowl’s crest: a potential mechanosensory role for feathers during social displays

Kane, S. A.; Van Beveren, D.; Dakin, R.

10.1101/197525 — zoology — Posted on 2017-10-02

1617 Timing of gene expression in a cell-fate decision system

Aymoz, D.; Sole, C.; Pierre, J.-J.; Schmitt, M.; de Nadal, E.; Posas, F.; Pelet, S.

10.1101/197103 — systems biology — Posted on 2017-10-02

1618 Assessing Selectivity in the Basal Ganglia: The "Gearbox" Hypothesis

Fountas, Z.; Shanahan, M.

10.1101/197129 — neuroscience — Posted on 2017-10-02

1619 The effects of long-term atorvastatin use on the cytoarchitecture of new and older neurons of sensorimotor nucleus HVC in a juvenile songbird model

Tsoi, S. C.; Barrientos, A. C.; Pytte, C. L.; Vicario, D. S.; Phan, M. L.

10.1101/196204 — neuroscience — Posted on 2017-10-02

1620 Competitive learning modulates memory consolidation during sleep.

Antony, J.; Cheng, L. Y.; Pacheco, P.; Paller, K.; Norman, K.

10.1101/196964 — neuroscience — Posted on 2017-10-02

1621 Thalamostriatal and cerebellothalamic pathways in a songbird, the Bengalese finch

Nicholson, D. A.; Roberts, T.; Sober, S. J.

10.1101/197590 — neuroscience — Posted on 2017-10-02

1622 A State Space Model of a Visuomotor Rotation Experiment

Broucke, M. E.

10.1101/197483 — neuroscience — Posted on 2017-10-02

1623 Reproducibility of importance extraction methods in neural network based fMRI classification

Gotsopoulos, A.; Saarimaki, H.; Glerean, E.; Jaaskelainen, I. P.; Sams, M.; Nummenmaa, L.; Lampinen, J.

10.1101/197277 — neuroscience — Posted on 2017-10-02

1624 Neural data science: accelerating the experiment-analysis-theory cycle in large-scale neuroscience

Paninski, L.; Cunningham, J.

10.1101/196949 — neuroscience — Posted on 2017-10-02

1625 Degeneracy in the robust expression of spectral selectivity, subthreshold oscillations and intrinsic excitability of entorhinal stellate cells

Mittal, D.; Narayanan, R.

10.1101/197392 — neuroscience — Posted on 2017-10-02

1626 Current Speech Motor Control Models: An Overview of Architectures & Properties

Parrell, B.; Lammert, A. C.; Ciccarelli, G.; Quatieri, T. F.

10.1101/197285 — neuroscience — Posted on 2017-10-02

1627 Magnetic resonance imaging does not reveal structural alterations in the brain of synesthetes

Dojat, M.; Pizzagalli, F.; Hupe, J.-M.

10.1101/196865 — neuroscience — Posted on 2017-10-02

1628 Initiation, elongation and realignment during influenza virus mRNA synthesis

te Velthuis, A.; Oymans, J.

10.1101/197210 — microbiology — Posted on 2017-10-02

1629 Probing the evolutionary robustness of anti-virulence treatments targeting iron uptake in Pseudomonas aeruginosa

Rezzoagli, C.; Wilson, D.; Weigert, M.; Wyder, S.; Kuemmerli, R.

10.1101/195974 — microbiology — Posted on 2017-10-02

1630 Hunters or gardeners?Linking community structure and function of trap-associated microbes to the nutrient acquisition strategy of a carnivorous plant

Sirova, D.; Barta, J.; Simek, K.; Posch, T.; Pech, J.; Stone, J.; Borovec, J.; Adamec, L.; Vrba, J.

10.1101/197020 — microbiology — Posted on 2017-10-02

1631 A unified web platform for network-based analyses of genomic data

10.1101/196303 — genomics — Posted on 2017-10-02

1632 The dynamic evolution of Drosophila innubila Nudivirus

Hill, T.; Unckless, R.

10.1101/197293 — genomics — Posted on 2017-10-02

1633 The genome sequence of the soft-rot fungus Penicillium purpurogenum reveals a high gene dosage for lignocellulolytic enzymes

Eyzaguirre, J.; Mardones, W.; Di Genova, A.; Cortes, M. P.; Travisany, D.; Maass, A.

10.1101/197368 — genomics — Posted on 2017-10-02

1634 Adaptation in plant genomes: bigger isn’t better, but it’s probably different

Mei, W.; Stetter, M. G.; Gates, D. J.; Stitzer, M.; Ross-Ibarra, J.

10.1101/196501 — evolutionary biology — Posted on 2017-10-02

1635 Epistatic interactions drive biased gene retention in the face of massive nuclear introgression

Forsythe, E. S.; Nelson, A. D.; Beilstein, M. A.

10.1101/197087 — evolutionary biology — Posted on 2017-10-02

1636 Partial restoration of mutational robustness after addition of genetic polymorphism and in the presence of sexual selection

Nieberding, C.; San Martin, G.; Saenko, S.; Allen, C.; Brakefield, P.; Visser, B.

10.1101/197194 — evolutionary biology — Posted on 2017-10-02

1637 DIETARY AND DEVELOPMENTAL SHIFTS IN BUTTERFLY-ASSOCIATED BACTERIAL COMMUNITIES

Phalnikar, K.; Kunte, K.; Agashe, D.

10.1101/196816 — ecology — Posted on 2017-10-02

1638 C3D: A tool to predict 3D genomic interactions between cis-regulatory elements

Mehdi, T.; Bailey, S. D.; Guilhamon, P.; Lupien, M.

10.1101/197301 — bioinformatics — Posted on 2017-10-02

1639 FastViromeExplorer: A Pipeline for Virus and Phage Identification and Abundance Profiling in Metagenomics Data

Tithi, S. S.; Jensen, R. V.; Zhang, L.

10.1101/196998 — bioinformatics — Posted on 2017-10-02

1640 Methods in field chronobiology

Dominoni, D.; Akesson, S.; Klaassen, R.; Spoelstra, K.; Bulla, M.

10.1101/197541 — animal behavior and cognition — Posted on 2017-10-02

1641 Inhibition of mitochondrial fission preserves photoreceptors after retinal detachment

She, X.; Lu, X.; Li, T.; Sun, J.; Liang, J.; Zhai, Y.; Yang, S.; Gu, Q.; Wei, F.; Zhu, H.; Wang, F.; Luo, X.; Sun, X.

10.1101/197467 — neuroscience — Posted on 2017-10-02

1642 Fit to speak - Physical fitness is related to less language decline in ageing

Segaert, K.; Lucas, S. J. E.; Burley, C. V.; Segaert, P.; Milner, A. E.; Ryan, M.; Wheeldon, L.

10.1101/197095 — neuroscience — Posted on 2017-10-02

1643 MreB Filaments Create Rod Shape By Aligning Along Principal Membrane Curvature.

Hussain, S.; Wivagg, C. N.; Szwedziak, P.; Wong, F.; Schaefer, K.; Izore, T.; Renner, L. D.; Sun, Y.; Bisson Filho, A. W.; Walker, S.; Amir, A.; Lowe, J.; Garner, E.

10.1101/197475 — microbiology — Posted on 2017-10-02

1644 Novel genes required for the fitness of Streptococcus pyogenes in human saliva

Zhu, L.; Charbonneau, A.; Waller, A.; Olsen, R.; Beres, S.; Musser, J.

10.1101/196931 — microbiology — Posted on 2017-10-02

1645 DNA-Demethylating Agents enhance cytolytic activity of CD8+ T Cells and anti-tumor immunity

Loo Yau, H.; Chakravarthy, A.; Almeida, F. C.; Allard, D.; Singhania, R.; Ettayebi, I.; Shen, S. Y.; Medina, T.; Mehdipour, P.; Morancho, B.; Pommey, S.; Klein, C.; Amarante-Mendes, G.; Roulois, D.; Butler, M.; Arribas, J.; Stagg, J.; De Carvalho, D. D.

10.1101/197236 — cancer biology — Posted on 2017-10-02

1646 Mechanics and buckling of biopolymeric shells and cell nuclei

Banigan, E. J.; Stephens, A. D.; Marko, J. F.

10.1101/197566 — biophysics — Posted on 2017-10-02

1647 A framework for generating interactive reports for cancer genome analysis

Okada, A.; Chiba, K.; Tanaka, H.; Miyano, S.; Shiraishi, Y.

10.1101/194035 — bioinformatics — Posted on 2017-10-02

1648 Modeling transcription factor combinatorics in promoters and enhancers

Vandel, J.; Cassan, O.; Lebre, S.; Lecellier, C.-H.; Brehelin, L.

10.1101/197418 — bioinformatics — Posted on 2017-10-02

1649 Hierarchical organization endows the kinase domain with regulatory plasticity

Creixell, P.; Pandey, J. P.; Palmeri, A.; Santa-Olalla, M. C.; Ranganathan, R.; Pincus, D.; Yaffe, M. B.

10.1101/197491 — systems biology — Posted on 2017-10-02

1650 The plastid-nucleus located DNA/RNA binding protein WHIRLY1 regulates microRNA-levels during stress

Swida-Barteczka, A.; Krieger-Liszkay, A.; Bilger, W.; Voigt, U.; Hensel, G.; Szweykowska-Kulinska, Z.; Krupinska, K.

10.1101/197202 — plant biology — Posted on 2017-10-02

1651 Novel Compensatory Mechanisms Enable the Mutant KCNT1 Channels to Induce Seizures

Ehaideb, S.; Decker, G.; Smith, P.; Davis, D.; Zhang, B.

10.1101/191171 — neuroscience — Posted on 2017-10-02

1652 Genetic reagents for making split-GAL4 lines in Drosophila

Dionne, H.; Hibbard, K.; Cavallaro, A.; Kao, J.-C.; Rubin, G. M.

10.1101/197509 — neuroscience — Posted on 2017-10-02

1653 Peatland Acidobacteria with a dissimilatory sulfur metabolism

Hausmann, B.; Pelikan, C.; Herbold, C. W.; Koestlbacher, S.; Albertsen, M.; Eichorst, S. A.; Glavina del Rio, T.; Huemer, M.; Nielsen, P. H.; Rattei, T.; Stingl, U.; Tringe, S. G.; Trojan, D.; Wentrup, C.; Woebken, D.; Pester, M.; Loy, A.

10.1101/197269 — microbiology — Posted on 2017-10-02

1654 miR-128-induced LINE-1 restriction is dependent on down-regulation of hnRNPA1

Pedersen, I.; Fung, L.; Guzman, H.; Sevrioukov, E.; Idica, A.; Park, E.; Bochnakien, A.; Daugaard, I.; Jury, D.; Mortazavi, A.; Zisoulis, D.

10.1101/195560 — cell biology — Posted on 2017-10-02

1655 A simple and powerful analysis of lateral subdiffusion using single particle tracking

RENNER, M.; WANG, L.; LEVI, S.; hennekinne, L.; TRILLER, A.

10.1101/197152 — biophysics — Posted on 2017-10-02

1656 Deep Convolutional Neural Networks Enable Discrimination of Heterogeneous Digital Pathology Images

Khosravi, P.; Kazemi, E.; Imielinski, M.; Elemento, O.; Hajirasouliha, I.

10.1101/197517 — bioinformatics — Posted on 2017-10-02

1657 Directed evolution of TurboID for efficient proximity labeling in living cells and organisms

Branon, T. C.; Bosch, J. A.; Sanchez, A. D.; Udeshi, N. D.; Svinkina, T.; Carr, S. A.; Feldman, J. L.; Perrimon, N.; Ting, A. Y.

10.1101/196980 — bioengineering — Posted on 2017-10-02

1658 A radial pillar device (RAPID) for continuous and high-throughput separation of multi-sized particles

Mehendale, N. D.; Sharma, O.; Dcosta, C.; Paul, D.

10.1101/197046 — bioengineering — Posted on 2017-10-02

1659 Neuropathic mutations in MORC2 perturb GHKL ATPase dimerization dynamics and epigenetic silencing by multiple structural mechanisms

Douse, C. H.; Bloor, S.; Liu, Y.; Shamin, M.; Tchasovnikarova, I. A.; Timms, R. T.; Lehner, P. J.; Modis, Y.

10.1101/197186 — biochemistry — Posted on 2017-10-02

1660 An Algorithmic Information Calculus for Causal Discovery and Reprogramming Systems

Zenil, H.; Kiani, N. A.; Marabita, F.; Deng, Y.; Elias, S.; Schmidt, A.; Ball, G.; Tegner, J.

10.1101/185637 — systems biology — Posted on 2017-10-02

1661 Enter the matrix: Interpreting unsupervised feature learning with matrix decomposition to discover hidden knowledge in high-throughput omics data

Stein-O'Brien, G. L.; Arora, R.; Culhane, A. C.; Favorov, A.; Greene, C.; Goff, L. A.; Li, Y.; Ngom, A.; Ochs, M. F.; Xu, Y.; Fertig, E. J.

10.1101/196915 — systems biology — Posted on 2017-10-02

1662 Transcriptomic characterization of MRI contrast, focused on the T1-w/T2-w ratio in the cerebral cortex

Ritchie, J.; Pantazatos, S.; French, L.

10.1101/196386 — neuroscience — Posted on 2017-10-02

1663 Treatment-resistant depression and peripheral C-reactive protein

Chamberlain, S. R.; Cavanagh, J.; de Boer, P.; Mondelli, V.; Jones, D.; Drevets, W.; Cowen, P.; Harrison, N.; Pointon, L.; NIMA Consortium, ; Pariante, C.; Bullmore, E. T.

10.1101/197012 — neuroscience — Posted on 2017-10-02

1664 From lake to estuary, the tale of two waters. A study of aquatic continuum biogeochemistry

Julian, P.; Osborne, T. Z.

10.1101/184101 — ecology — Posted on 2017-10-02

1665 Glioma Through the Looking GLASS: the Glioma Longitudinal Analysis consortium, molecular evolution of diffuse gliomas

The Glioma Longitudinal Analysis Consortium, ; Verhaak, R.

10.1101/196139 — cancer biology — Posted on 2017-10-02

1666 Functional network community detection can disaggregate and filter multiple underlying pathways in enrichment analyses

Harrington, L. X.; Way, G. P.; Doherty, J. A.; Greene, C. S.

10.1101/166207 — bioinformatics — Posted on 2017-10-02

1667 Selection of most relevant centrality measures: A systematic survey on protein-protein interaction networks

Ashtiani, M.; Salehzadeh, A.; Razaghi-Moghadam, Z.; Hennig, H.; Wolkenhauer, O.; Mirzaie, M.; Jafari, M.

10.1101/149492 — systems biology — Posted on 2017-10-02

1668 Altering lipid droplet homeostasis affects Coxiella burnetii intracellular growth

Mulye, M.; Zapata, B.; Gilk, S.

10.1101/112300 — microbiology — Posted on 2017-10-02

1669 Using Connectivity To Identify Climatic Drivers Of Local Adaptation

Macdonald, S. L.; Llewelyn, J.; Phillips, B.

10.1101/145169 — evolutionary biology — Posted on 2017-10-02

1670 Motor reattachment kinetics play a dominant role in multimotor-driven cargo transport

Feng, Q.; Mickolajczyk, K. J.; Chen, G.-Y.; Hancock, W. O.

10.1101/180778 — biophysics — Posted on 2017-10-02

1671 Extracting a Biologically Relevant Latent Space from Cancer Transcriptomes with Variational Autoencoders

Way, G. P.; Greene, C. S.

10.1101/174474 — bioinformatics — Posted on 2017-10-02

1672 Compositional clustering in task structure learning

Franklin, N. T.; Frank, M. J.

10.1101/196923 — neuroscience — Posted on 2017-10-02

1673 Dual RNAseq shows the human mucosal immunity protein, MUC13, is a hallmark of Plasmodium exoerythrocytic infection

LaMonte, G.; Orjuela-Sanchez, P.; Wang, L.; Li, S.; Swann, J.; Cowell, A.; Zou, B. Y.; Abdel- Haleem Mohamed, A.; Villa-Galarce, Z.; Moreno, M.; Tong-Rios, C.; Vinetz, J.; Lewis, N.; Winzeler, E. A.

10.1101/183764 — microbiology — Posted on 2017-10-02

1674 Optimal Therapy Scheduling Based on a Pair of Collaterally Sensitive Drugs

Yoon, N.; Vander Velde, R.; Marusyk, A.; Scott, J.

10.1101/196824 — cancer biology — Posted on 2017-10-02

1675 An Algorithmic Information Calculus for Causal Discovery and Reprogramming Systems

Zenil, H.; Kiani, N. A.; Marabita, F.; Deng, Y.; Elias, S.; Schmidt, A.; Ball, G.; Tegner, J.

10.1101/185637 — systems biology — Posted on 2017-10-02

1676 Offline Replay Supports Planning: fMRI Evidence from Reward Revaluation

Momennejad, I.; Otto, A. R.; Daw, N. D.; Norman, K. A.

10.1101/196758 — neuroscience — Posted on 2017-10-02

1677 Revisiting the Implementation of the Network Centralities: A Survey on Protein-Protein Interaction Networks

Ashtiani, M.; Salehzadeh-Yazdi, A.; Razaghi-Moghadam, Z.; Hennig, H.; Wolkenhauer, O.; Mirzaie, M.; Jafari, M.

10.1101/149492 — systems biology — Posted on 2017-10-02

1678 A mechanism for prime-realignment during influenza A virus replication

Oymans, J.; te Velthuis, A.

10.1101/138487 — microbiology — Posted on 2017-10-02

1679 Stress granule-inducing eukaryotic translation initiation factor 4A inhibitors block influenza A virus replication

Slaine, P. D.; Kleer, M.; Smith, N.; Khaperskyy, D. A.; McCormick, C.

10.1101/194589 — microbiology — Posted on 2017-10-02

1680 A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog

Morales, J.; Bowler, E. H.; Buniello, A.; Cerezo, M.; Hall, P.; Harris, L. W.; Hastings, E.; Junkins, H. A.; Malangone, C.; McMahon, A. C.; Milano, A.; Welter, D.; Burdett, T.; Cunningham, F.; Flicek, P.; Parkinson, H.; Hindorff, L.; MacArthur, J. A. L.

10.1101/129395 — genetics — Posted on 2017-10-02

1681 Mapping Quantitative Trait Loci Underlying Circadian Light Sensitivity In Drosophila

Adewoye, A. B.; Nuzhdin, S.; Tauber, E.

10.1101/135129 — genetics — Posted on 2017-10-02

1682 Enter the matrix: Interpreting unsupervised feature learning with matrix decomposition to discover hidden knowledge in high-throughput omics data

Stein-O'Brien, G. L.; Arora, R.; Culhane, A. C.; Favorov, A.; Greene, C.; Goff, L. A.; Li, Y.; Ngom, A.; Ochs, M. F.; Xu, Y.; Fertig, E.

10.1101/196915 — systems biology — Posted on 2017-10-02

1683 Assessment of the need for separate test set and number of medical images necessary for deep learning: a sub-sampling study

Rokem, A.; Wu, Y.; Lee, A. Y.

10.1101/196659 — neuroscience — Posted on 2017-10-01

1684 Fine-mapping the Favored Mutation in a Positive Selective Sweep

Akbari, A.; Vitti, J. J.; Iranmehr, A.; Bakhtiari, M.; Sabeti, P.; Mirarab, S.; Bafna, V.

10.1101/139055 — evolutionary biology — Posted on 2017-10-01

1685 Safety evaluation of soy leghemoglobin protein preparation derived from Pichia pastoris, intended for use as a flavor catalyst in plant-based meat

Fraser, R. Z.; Shitut, M.; Agrawal, P.; Mendes, O.; Klapholz, S.

10.1101/196766 — pharmacology and toxicology — Posted on 2017-10-01

1686 Mapping Cortical Brain Asymmetry in 17,141 Healthy Individuals Worldwide via the ENIGMA Consortium

Kong, X.-Z.; Mathias, S.; Guadalupe, T.; Abe, C.; Agartz, I.; Akudjedu, T. N.; Aleman, A.; Alhusaini, S.; Allen, N. B.; Ames, D.; Andreassen, O. A.; Armstrong, N. J.; Bergo, F.; Bastin, M. E.; Batalla, A.; Bauer, J.; Baune, B.; Baur, R.; Biederman, J.; Blaine, S. K.; Boedhoe, P.; Boen, E.; Bose, A.; Bralten, J.; Brandeis, D.; Brem, S.; Brodaty, H.; Bröhl, H.; Buitelaar, J.; Bürger, C.; Bülow, R.; Calhoun, V.; Calvo, A.; Canales-Rodriguez, E. J.; Canive, J. M.; Cannon, D. M.; Caparelli, E. C.; Castellanos, F. X.; Cavalleri, G. L.; Cendes, F.; Chaim-Avancini, T. M.; Chant

10.1101/196634 — neuroscience — Posted on 2017-10-01

1687 Data-driven Assessment of Structural Image Quality

Rosen, A.; Roalf, D. R.; Ruparel, K.; Blake, J.; Seelaus, K.; Villa, L. P.; Ciric, R.; Cook, P. A.; Davatzikos, C.; Elliott, M. A.; Garcia De La Garza, A.; Gennatas, E. D.; Quarmley, M.; Schmitt, J. E.; Shionhara, R. T.; Tisdall, M. D.; Craddock, R. C.; Gur, R. E.; Gur, R. C.; Satterthwaite, T. D.

10.1101/125161 — neuroscience — Posted on 2017-10-01

1688 The Impact of Random Models on Clustering Similarity

Gates, A. J.; Ahn, Y.-Y.

10.1101/196840 — bioinformatics — Posted on 2017-10-01

1689 How is structural divergence related to evolutionary information?

Zea, D. J.; Monzon, A. M.; Parisi, G.; Marino-Buslje, C.

10.1101/196782 — bioinformatics — Posted on 2017-10-01

1690 Learning naturalistic temporal structure in the posterior medial network

Aly, M.; Chen, J.; Turk-Browne, N. B.; Hasson, U.

10.1101/196287 — neuroscience — Posted on 2017-10-01

1691 Assessment of the need for separate test set and number of medical images necessary for deep learning: a sub-sampling study

Rokem, A.; Wu, Y.; Lee, A. Y.

10.1101/196659 — neuroscience — Posted on 2017-10-01

1692 Rice paddy Nitrospirae encode and express genes related to sulfate respiration: proposal of the new genus Candidatus Sulfobium

Zecchin, S.; Mueller, R. C.; Seifert, J.; Stingl, U.; Anantharaman, K.; van Bergen, M.; Cavalca, L.; Pester, M.

10.1101/196774 — microbiology — Posted on 2017-10-01

1693 Relating C-reactive Protein to Psychopathology after Cardiac Surgery and Intensive Care Unit Admission: A Mendelian Randomization Study

Kok, L.; Lin, B.; Broersen, J.; Bekema, E.; Medic, J.; van Eijk, K.; Hillegers, M.; Veldhuijzen, D.; Luykx, J.

10.1101/196790 — genetics — Posted on 2017-10-01

1694 Carbon pool trends and dynamics within a subtropical peatland during long-term restoration

Julian, P.; Gerber, S.; Wright, A. L.; Gu, B.; Osborne, T. Z.

10.1101/196907 — ecology — Posted on 2017-10-01

1695 Exchange protein directly activated by cAMP plays a critical role in regulation of vascular fibrinolysis

He, X.; Drelich, A.; Chang, Q.; Gong, D.; Zhou, Y.; Qu, Y.; Yu, S.; Yang, Y.; Qian, J.; Qiu, Y.; Tang, S.-J.; Gaitas, A.; Ksiazek, T.; Xu, Z.; Wakamiya, M.; Lu, F.; Gong, B.

10.1101/196899 — cell biology — Posted on 2017-10-01

1696 Adenylate kinase-4 modulates oxidative stress and stabilizes HIF-1α to drive lung cancer metastasis

Jan, Y.-H.; Lai, T.-C.; Yang, C.-J.; Lin, Y.-F.; Huang, M.-S.; Hsiao, M.

10.1101/196857 — cancer biology — Posted on 2017-10-01

1697 Accessibility of the Shine-Dalgarno sequence dictates N-terminal codon bias in E. coli

Bhattacharyya, S.; Jacobs, W. M.; Adkar, B. V.; Yan, J.; Zhang, W.; Shakhnovich, E. I.

10.1101/195727 — biophysics — Posted on 2017-10-01

1698 Reproducibility of R-fMRI Metrics on the Impact of Different Strategies for Multiple Comparison Correction and Sample Sizes

Chen, X.; Lu, B.; Yan, C.-G.

10.1101/128645 — neuroscience — Posted on 2017-10-01

1699 Contemporary evolution of a Lepidopteran species, Heliothis virescens, in response to modern agricultural practices

Fritz, M. L.; DeYonke, A. M.; Papanicolaou, A.; Micinski, S.; Westbrook, J.; Gould, F.

10.1101/103382 — evolutionary biology — Posted on 2017-10-01

1700 Inducing Chondrogenesis In MSC/Chondrocyte Co-Cultures Using Exogenous TGF-β: A Mathematical Model

Chen, M.; Whiteley, J.; Please, C.; Schwab, A.; Ehlicke, F.; Waters, S.; Byrne, H.

10.1101/141119 — bioengineering — Posted on 2017-10-01

Archive, 2017-10