bioRxiv directory

Siobhan McMahon;Oleg Lenive;Sarah Filippi;Michael Stumpf;

10.1101/023697 — Systems Biology — Posted on 2015-07-31

3 INSULIN GROWTH FACTOR I AND ITS RECEPTOR ARE ANTAGONISTIC MODULATORS OF GLUCOSE HANDLING BY ASTROCYTES

Edwin Hernandez;Ana M Fernandez;Alberto Perez Alvarez;Sara Mederos;Paloma Perez Domper;Pablo Bascuñana;Ruben Fernandez de la Rosa;Mercedes Delgado;Miguel Angel Pozo;Antonio Miranda Vizuete;Diego Guerrero Gomez;Estefania Moreno;Peter J McCormick;Andrea Santi;Laura Genis;Angel Trueba Saiz;Cristina Garcia-Caceres;Matthias Tschöp;Alfonso Araque;Gertrudis Perea;Eduardo D Martin;Ignacio Torres Aleman;

10.1101/023556 — Neuroscience — Posted on 2015-07-31

4 Estimating directed connectivity from cortical recordings and reconstructed sources

Margarita Papadopoulou;Karl J Friston;Daniele Marinazzo;

10.1101/023523 — Neuroscience — Posted on 2015-07-31

5 Formation and maintenance of robust long-term information storage in the presence of synaptic turnover

Michael Fauth;Florentin Wörgötter;Christian Tetzlaff;

10.1101/023531 — Neuroscience — Posted on 2015-07-31

6 FORGE: multivariate calculation of gene-wide p-values from Genome-Wide Association Studies Authors and Affiliations

Inti Inal Pedroso;Michael R Barnes;Anbarasu Lourdusamy;Ammar Al-Chalabi;Gerome Breen;

10.1101/023648 — Genetics — Posted on 2015-07-31

7 The contribution of rare variation to prostate cancer heritability

Nicholas Mancuso;Nadin Rohland;Kristin Rand;Arti Tandon;Alexander Allen;Dominique Quinque;Swapan Mallick;Heng Li;Alex Stram;Xin Sheng;Zsofia Kote-Jarai;Douglas F Easton;Rosalind A Eeles;the PRACTICAL consortium;Loic Le Marchand;Alex Lubwama;Daniel Stram;Stephen Watya;David V Conti;Brian Henderson;Christopher Haiman;Bogdan Pasaniuc;David Reich;

10.1101/023440 — Genetics — Posted on 2015-07-31

8 The contribution of rare variation to prostate cancer heritability

10.1101/023440 — Genetics — Posted on 2015-07-31

9 Estimating the effect of competition on trait evolution using maximum likelihood inference

Jonathan Drury;Julien Clavel;Marc Manceau;Hélène Morlon;

10.1101/023473 — Evolutionary Biology — Posted on 2015-07-31

10 Perturbative formulation of general continuous-time Markov model of sequence evolution via insertions/deletions, Part IV: Incorporation of substitutions and other mutations

Kiyoshi Ezawa;Dan Graur;Giddy Landan;

10.1101/023622 — Evolutionary Biology — Posted on 2015-07-31

11 Perturbative formulation of general continuous-time Markov model of sequence evolution via insertions/deletions, Part III: Algorithm for first approximation

Kiyoshi Ezawa;Dan Graur;Giddy Landan;

10.1101/023614 — Bioinformatics — Posted on 2015-07-31

12 Perturbative formulation of general continuous-time Markov model of sequence evolution via insertions/deletions, Part I: Theoretical basis

Kiyoshi Ezawa;Dan Graur;Giddy Landan;

10.1101/023598 — — Posted on 2015-07-31

13 The constant philopater hypothesis: a new life history invariant for dispersal evolution

António M. M. Rodrigues;Andy Gardner;

10.1101/023655 — Evolutionary Biology — Posted on 2015-07-31

14 Perturbative formulation of general continuous-time Markov model of sequence evolution via insertions/deletions, Part II: Perturbation analyses

Kiyoshi Ezawa;Dan Graur;Giddy Landan;

10.1101/023606 — Evolutionary Biology — Posted on 2015-07-31

15 Stabilizing the dynamics of laboratory populations of Drosophila melanogaster through upper and lower limiter controls

Sudipta Tung;Abhishek Mishra;Sutirth Dey;

10.1101/023507 — Ecology — Posted on 2015-07-31

16 Comparison of biochemical, histological and morphological response of muscle-based condition indices to varying food levels in pre-flexion Dicentrarchus labrax (L.) larvae

Ignacio A Catalán;María Pilar Olivar;Elisa Berdalet;

10.1101/023630 — Ecology — Posted on 2015-07-31

17 Inverting proteomics analysis provides powerful insight into the peptide/protein conundrum

Wilson Wen Bin Goh;Limsoon Wong;

10.1101/023515 — Bioinformatics — Posted on 2015-07-31

18 Fast Bayesian Inference of Copy Number Variants using Hidden Markov Models with Wavelet Compression

John Wiedenhoeft;Eric Brugel;Alexander Schliep;

10.1101/023705 — Bioinformatics — Posted on 2015-07-31

19 OptoDyCE: Automated System for High-Throughput All-Optical Dynamic Cardiac Electrophysiology

Aleksandra Klimas;Jinzhu Yu;Christina M. Ambrosi;John C. Williams;Harold Bien;Emilia Entcheva;

10.1101/023572 — Bioengineering — Posted on 2015-07-31

20 OptoDyCE: Automated System for High-Throughput All-Optical Dynamic Cardiac Electrophysiology

Aleksandra Klimas;Jinzhu Yu;Christina M. Ambrosi;John C. Williams;Harold Bien;Emilia Entcheva;

10.1101/023572 — Bioengineering — Posted on 2015-07-31

21 Genomic signatures of experimental adaptation to antimicrobial peptides in Staphylococcus aureus

Paul R Johnston;Adam J Dobson;Jens Rolff;

10.1101/023549 — Microbiology — Posted on 2015-07-30

22 Dissecting the roles of local packing density and longer-range effects in protein sequence evolution

Amir Shahmoradi;Claus O Wilke;

10.1101/023499 — Bioinformatics — Posted on 2015-07-30

23 Elucidating Variants in Systemic JIA from Analysis of Illumina & Ion Torrent Exome Data

Mohammed Rahman;

10.1101/023580 — Bioinformatics — Posted on 2015-07-30

24 Structural modeling of the flagellum MS ring protein FliF reveals similarities to the type III secretion system and sporulation complex

Julien R. C. Bergeron;

10.1101/023564 — Biochemistry — Posted on 2015-07-30

25 Maximum Likelihood Estimation of Biological Relatedness from Low Coverage Sequencing Data

Mikhail Lipatov;Komal Sanjeev;Rob Patro;Krishna Veeramah;

10.1101/023374 — Genetics — Posted on 2015-07-29

26 Evolution of color phenotypes in two distantly related species of stick insect: different ecological regimes acting on similar genetic architectures

Aaron Comeault;Clarissa Ferreira;Stuart Dennis;Victor Soria-Carrasco;Patrik Nosil;

10.1101/023481 — Evolutionary Biology — Posted on 2015-07-30

27 Length Distribution of Ancestral Tracks under a General Admixture Model and Its Applications in Population History Inference

Xumin Ni;Xiong Yang;Wei Guo;Kai Yuan;Ying Zhou;Zhiming Ma;Shuhua Xu;

10.1101/023390 — Genetics — Posted on 2015-07-28

28 EigenGWAS: finding loci under selection through genome-wide association studies of eigenvectors in structured populations

Guo-Bo Chen;Sang Hong Lee;Zhi-Xiang Zhu;Beben Benyamin;Matthew R Robinson;

10.1101/023457 — Genetics — Posted on 2015-07-29

29 Crowdsourced geometric morphometrics enable rapid large-scale collection and analysis of phenotypic data

Jonathan Chang;Michael E Alfaro;

10.1101/023382 — Evolutionary Biology — Posted on 2015-07-28

30 Hybrid-Lambda: simulation of multiple merger and Kingman gene genealogies in species networks and species trees

Sha Zhu;James H Degnan;Sharyn J Goldstien;Bjarki Eldon;

10.1101/023465 — Evolutionary Biology — Posted on 2015-07-29

31 Circlator: automated circularization of genome assemblies using long sequencing reads

Martin Hunt;Nishadi De Silva;Thomas D Otto;Julian Parkhill;Jacqueline A Keane;Simon R Harris;

10.1101/023408 — Bioinformatics — Posted on 2015-07-30

32 Circlator: automated circularization of genome assemblies using long sequencing reads

Martin Hunt;Nishadi De Silva;Thomas D Otto;Julian Parkhill;Jacqueline A Keane;Simon R Harris;

10.1101/023408 — Bioinformatics — Posted on 2015-07-28

33 Adaptive Evolution for Increased Biomass and Magnetic Nanoparticle Productivity of Magnetotactic Bacteria

Karthik Sekar;Javin P Oza;

10.1101/022590 — Bioengineering — Posted on 2015-07-29

34 Adaptive Evolution for Increased Biomass and Magnetic Nanoparticle Productivity of Magnetotactic Bacteria

Karthik Sekar;Javin P Oza;

10.1101/022590 — Bioengineering — Posted on 2015-07-28

35 Phenotypic analysis of Arabidopsis transgenic plants constitutively expressing the P6 protein from Cauliflower mosaic virus or mutant alleles thereof

Angèle Geldreich;Christophe Himber;Gabrielle Haas;Mario Keller;Olivier Voinnet;

10.1101/023283 — Plant Biology — Posted on 2015-07-28

36 A rapid and tunable method to temporally control Cas9 expression enables the identification of essential genes and the interrogation of functional gene interactions in vitro and in vivo.

Serif Senturk;Nitin H Shirole;Dawid D. Nowak;Vincenzo Corbo;Alexander Vaughan;David A. Tuveson;Lloyd C. Trotman;Adam Kepecs;Frank Stegmeier;Raffaella Sordella;

10.1101/023366 — Bioengineering — Posted on 2015-07-28

37 Topology, cross-frequency, and same-frequency band interactions shape the generation of phase-amplitude coupling in a neural mass model of a cortical column

Roberto Sotero;

10.1101/023291 — Neuroscience — Posted on 2015-07-27

38 GOTHiC, a simple probabilistic model to resolve complex biases and to identify real interactions in Hi-C data

Borbala Mifsud;Inigo Martincorena;Elodie Darbo;Robert Sugar;Stefan Schoenfelder;Peter Fraser;Nicholas Luscombe;

10.1101/023317 — Genomics — Posted on 2015-07-27

39 The genetic basis of cone serotiny in Pinus contorta as a function of mixed-severity and stand-replacement fire regimes

Mike Feduck;Philippe Henry;Richard Winder;David Dunn;René I Alfaro;Lara vanAkker;Brad Hawkes;

10.1101/023267 — Genetics — Posted on 2015-07-27

40 SEX-DETector: a probabilistic approach to uncover sex chromosomes in non-model organisms

Aline Muyle;Jos Kafer;Niklaus Zemp;Sylvain Mousset;Franck Picard;Gabriel AB Marais;

10.1101/023358 — Genetics — Posted on 2015-07-27

41 Dating ancient human samples using the recombination clock

Priya Moorjani;Sriram Sankararaman;Qiaomei Fu;Molly Przeworski;Nick J Patterson;David E. Reich;

10.1101/023341 — Evolutionary Biology — Posted on 2015-07-27

42 Phylogenetic effective sample size

Krzysztof Bartoszek;

10.1101/023242 — Evolutionary Biology — Posted on 2015-07-27

43 Dis-integrating the fly: A mutational perspective on phenotypic integration and covariation

Annat Haber;Ian Dworkin;

10.1101/023333 — Evolutionary Biology — Posted on 2015-07-27

44 Long-term natural selection affects patterns of neutral divergence on the X chromosome more than the autosomes.

Melissa Ann Wilson Sayres;Pooja Narang;

10.1101/023234 — Evolutionary Biology — Posted on 2015-07-27

45 Self-organized patterning and morphogenesis in embryonic epithelia from antagonistic signals and fiber networks. (Topic: Establishment of Spatial and Temporal Patterns)

Frederick Cummings;Kai Lu;

10.1101/023069 — Evolutionary Biology — Posted on 2015-07-27

46 Effect of Localization on the Stability of Mutualistic Ecological Networks

Samir Suweis;Jacopo Grilli;Jayanth Banavar;Stefano Allesina;Amos Maritan;

10.1101/023275 — Ecology — Posted on 2015-07-27

47 destiny – diffusion maps for large-scale single-cell data in R

Philipp Angerer;Laleh Haghverdi;Maren Büttner;Fabian Theis;Carsten Marr;Florian Buettner;

10.1101/023309 — Bioinformatics — Posted on 2015-07-27

48 3D tree dimensionality assessment using photogrammetry and small unmanned aerial vehicles

Demetrios Gatziolis;Jean F. Lienard;Andre Vogs;Nikolay Strigul;

10.1101/023259 — Ecology — Posted on 2015-07-26

49 A spatio-temporal model for spontaneous thrombus formation in cerebral aneurysms

Orestis Malaspinas;Alexis Turjman;Daniel Ribeiro de Sousa;Guillermo Garcia-Cardena;Martine Raes;Phuc-Thien Thomas Nguyen;Yue Zhang;Guy Courbebaisse;Christophe Lelubre;Karim Zouaoui Boudjeltia;Bastien Chopard;

10.1101/023226 — Bioengineering — Posted on 2015-07-27

50 Dendrites enable a robust mechanism for neuronal stimulus selectivity

Romain D. Cazé;Sarah Jarvis;Amanda Joy Foust;Simon R Schultz;

10.1101/023200 — Neuroscience — Posted on 2015-07-24

51 Temporal patterns of damage and decay kinetics of DNA retrieved from plant herbarium specimens

Clemens L Weiß;Verena J Schuenemann;Jane Devos;Gautam Shirsekar;Ella Reiter;Billie A Gould;John R Stinchcombe;Johannes Krause;Hernán A Burbano;

10.1101/023135 — Evolutionary Biology — Posted on 2015-07-24

52 Capabilities and Limitations of Tissue Size Control Through Passive Mechanical Forces

Jochen Kursawe;Pavel A. Brodskiy;Jeremiah J. Zartman;Ruth E. Baker;Alexander George Fletcher;

10.1101/023184 — Developmental Biology — Posted on 2015-07-24

53 Cancer classification in the genomic era: five contemporary problems

Qingxuan Song;Sofia D Merajver;Jun Z Li;

10.1101/023127 — Genomics — Posted on 2015-07-23

54 Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer

Ruth Davidson;Pranjal Vachaspati;Siavash Mirarab;Tandy Warnow;

10.1101/023168 — Genomics — Posted on 2015-07-23

55 Predicting microbial relative growth in a mixed culture from growth curve data

Yoav Ram;Eynat Dellus-Gur;Maayan Bibi;Uri Obolski;Judith Berman;Lilach Hadany;

10.1101/022640 — Evolutionary Biology — Posted on 2015-07-23

56 Stable recombination hotspots in birds

Sonal Singhal;Ellen Leffler;Keerthi Sannareddy;Isaac Turner;Oliver Venn;Daniel Hooper;Alva Strand;Qiye Li;Brian Raney;Christopher Balakrishnan;Simon Griffith;Gil McVean;Molly Przeworski;

10.1101/023101 — Evolutionary Biology — Posted on 2015-07-23

57 Conflict and cooperation in eukaryogenesis: implications for the timing of endosymbiosis and the evolution of sex

Arunas L Radzvilavicius;Neil W Blackstone;

10.1101/023077 — Evolutionary Biology — Posted on 2015-07-23

58 Assessment of cladistic data availability for living mammals

Thomas Guillerme;Natalie Cooper;

10.1101/022970 — Evolutionary Biology — Posted on 2015-07-28

59 Assessment of cladistic data availability for living mammals

Thomas Guillerme;Natalie Cooper;

10.1101/022970 — Evolutionary Biology — Posted on 2015-07-23

60 Non-paradoxical evolutionary stability of the recombination initiation landscape in Saccharomycetes

Isabel Lam;Scott Keeney;

10.1101/023176 — Evolutionary Biology — Posted on 2015-07-23

61 Ancestral gene synteny reconstruction improves extant species scaffolding

Yoann Anselmetti;Vincent Berry;Cedric Chauve;Annie Chateau;Eric Tannier;Severine Berard;

10.1101/023085 — Bioinformatics — Posted on 2015-07-23

62 Phenotypic and genomic differentiation of Arabidopsis thaliana along altitudinal gradients in the North Italian alps

Torsten Günther;Christian Lampei;Ivan Barilar;Karl Schmid;

10.1101/023051 — Plant Biology — Posted on 2015-07-22

63 Sulfur Isotope Effects of Dissimilatory Sulfite Reductase

William D. Leavitt;Alexander S. Bradley;André A. Santos;Inês A.C. Pereira;David T. Johnston;

10.1101/023002 — Microbiology — Posted on 2015-07-22

64 ASTRID: Accurate Species TRees from Internode Distances

Pranjal Vachaspati;Tandy Warnow;

10.1101/023036 — Genomics — Posted on 2015-07-22

65 The Nicrophorus vespilloides genome and methylome, a beetle with complex social behavior

Christopher B Cunningham;Lexiang Ji;R. Axel W Wiberg;Jennifer M Shelton;Elizabeth C McKinney;Darren J Parker;Richard B Meagher;Kyle M Benowitz;Eileen M Roy-Zokan;Michael G Ritchie;Susan J Brown;Robert J Schmitz;Allen J Moore;

10.1101/023093 — Genomics — Posted on 2015-07-23

66 Estimating K in Genetic Mixture Models

Robert Verity;Richard Nichols;

10.1101/022988 — Evolutionary Biology — Posted on 2015-07-22

67 Coalescence with background and balancing selection in systems with bi- and uniparental reproduction: contrasting partial asexuality and selfing

Aneil Agrawal;Matthew Hartfield;

10.1101/022996 — Evolutionary Biology — Posted on 2015-07-22

68 Adaptation to temporally fluctuating environments by the evolution of maternal effects

Snigdhadip Dey;Steve Proulx;Henrique Teotonio;

10.1101/023044 — Evolutionary Biology — Posted on 2015-07-22

69 Incomplete proteasomal degradation of green fluorescent proteins in the context of tandem fluorescent protein timers

Anton Khmelinskii;Matthias Meurer;Chi-Ting Ho;Birgit Besenbeck;Julia Fueller;Marius K Lemberg;Bernd Bukau;Axel Mogk;Michael Knop;

10.1101/023119 — Cell Biology — Posted on 2015-07-23

70 Large-scale analysis of genome and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networks

Endre Sebestyén;Babita Singh;Belén Miñana;Amadís Pagès;Francesca Mateo;Miguel A Pujana;Juan Valcarcel;Eduardo Eyras;

10.1101/023010 — Cancer Biology — Posted on 2015-07-22

71 Nanoscale architecture of the axon initial segment reveals an organized and robust scaffold

Christophe Leterrier;Jean Potier;Ghislaine Caillol;Claire Debarnot;Fanny Rueda Boroni;Bénédicte Dargent;

10.1101/022962 — Neuroscience — Posted on 2015-07-21

72 Remodeling of the interphase chromatin domain structures in embryonic stem cells by targeted placement of human-specific regulatory loci

Gennadi Glinsky;

10.1101/022913 — Genomics — Posted on 2015-07-21

73 Haplotype-phased synthetic long reads from short-read sequencing

James A Stapleton;Jeongwoon Kim;John P Hamilton;Ming Wu;Luiz C Irber;Rohan Maddamsetti;Bryan Briney;Linsey Newton;Dennis R Burton;C Titus Brown;Christina Chan;C Robin Buell;Timothy A Whitehead;

10.1101/022897 — Genomics — Posted on 2015-07-21

74 First-step Mutations during Adaptation to Thermal Stress Shift the Expression of Thousands of Genes Back toward the Pre-stressed State

Alejandra Rodriguez-Verdugo;Olivier Tenaillon;Brandon Gaut;

10.1101/022905 — Evolutionary Biology — Posted on 2015-07-21

75 Purging of deleterious variants due to drift and founder effect in Italian populations with extended autozygosity

Massimiliano Cocca;Marc Pybus;Pier Francesco Palamara;Erik Garrison;Michela Traglia;Cinzia F Sala;Sheila Ulivi;Yasin Memari;Anja Kolb-Kokocinski;Shane McCarthy;Richard Durbin;Paolo Gasparini;Daniela Toniolo;Nicole Soranzo;Vincenza Colonna;

10.1101/022947 — Evolutionary Biology — Posted on 2015-07-21

76 Transcriptomes of plant gametophytes have a higher proportion of rapidly evolving and young genes than sporophytes

Toni I Gossmann;Dounia Saleh;Marc W Schmid;Michael A Spence;Karl J Schmid;

10.1101/022939 — Evolutionary Biology — Posted on 2015-07-21

77 Automatic Synthesis of Anthropomorphic Pulmonary CT Phantoms

Daniel Jimenez-Carretero;Raul San Jose Estepar;Mario Diaz Cacio;Maria J Ledesma-Carbayo;

10.1101/022871 — Bioengineering — Posted on 2015-07-22

78 Automatic Synthesis of Anthropomorphic Pulmonary CT Phantoms

Daniel Jimenez-Carretero;Raul San Jose Estepar;Mario Diaz Cacio;Maria J Ledesma-Carbayo;

10.1101/022871 — Bioengineering — Posted on 2015-07-21

79 Unearthing the microbial ecology of soil carbon cycling with DNA-SIP

Charles Pepe-Ranney;Ashley N Campbell;Chantal Koechli;Sean T Berthrong;Daniel H Buckley;

10.1101/022483 — Microbiology — Posted on 2015-07-20

80 Combinatorial metabolic engineering of Saccharomyces cerevisiae for terminal alkene production

Binbin Chen;Dong-Yup Lee;Matthew Wook Chang;

10.1101/022350 — Microbiology — Posted on 2015-07-20

81 A comparative study of SVDquartets and other coalescent-based species tree estimation methods

Jed Chou;Ashu Gupta;Shashank Yaduvanshi;Ruth Davidson;Mike Nute;Siavash Mirarab;Tandy Warnow;

10.1101/022855 — Genomics — Posted on 2015-07-20

82 Genetic loci with parent of origin effects cause hybrid seed lethality between Mimulus species

Austin G Garner;Amanda M Kenney;Lila Fishman;Andrea L Sweigart;

10.1101/022863 — Evolutionary Biology — Posted on 2015-07-20

83 Early modern human dispersal from Africa: genomic evidence for multiple waves of migration

Francesca Tassi;Silvia Ghirotto;Massimo Mezzavilla;Sibelle Torres Vilaça;Lisa De Santi;Guido Barbujani;

10.1101/022889 — Evolutionary Biology — Posted on 2015-07-20

84 Replaying Evolution to Test the Cause of Extinction of One Ecotype in an Experimentally Evolved Population

Caroline B. Turner;Zachary D. Blount;Richard E. Lenski;

10.1101/022798 — Evolutionary Biology — Posted on 2015-07-19

85 Improving fold activation of small transcription activating RNAs (STARs) with rational RNA engineering strategies.

Sarai Meyer;James Chappell;Sitara Sankar;Rebecca Chew;Julius B Lucks;

10.1101/022772 — Synthetic Biology — Posted on 2015-07-19

86 Adaptive divergence in the bovine genome

William Barendse;Sean McWilliam;Rowan J Bunch;Blair E Harrison;

10.1101/022764 — Genomics — Posted on 2015-07-17

87 Improving the Efficiency of Genomic Selection in Chinese Simmental beef cattle

Jiangwei Xia;Yang Wu;Huizhong Fang;Wengang Zhang;Yuxin Song;Lupei Zhang;Xue Gao;Yan Chen;Junya Li;Huijiang Gao;

10.1101/022673 — Genomics — Posted on 2015-07-17

88 What’s in your next-generation sequence data? An exploration of unmapped DNA and RNA sequence reads from the bovine reference individual

Lynsey K. Whitacre;Polyana C. Tizioto;JaeWoo Kim;Tad S. Sonstegard;Steven G. Schroeder;Leeson J. Alexander;Juan F. Medrano;Robert D. Schnabel;Jeremy F. Taylor;Jared E. Decker;

10.1101/022731 — Genomics — Posted on 2015-07-17

89 Iron Age and Anglo-Saxon genomes from East England reveal British migration history

Stephan Schiffels;Wolfgang Haak;Pirita Paajanen;Bastien Llamas;Elizabeth Popescu;Louise Lou;Rachel Clarke;Alice Lyons;Richard Mortimer;Duncan Sayer;Chris Tyler-Smith;Alan Cooper;Richard Durbin;

10.1101/022723 — Genetics — Posted on 2015-07-17

90 Local and sex-specific biases in crossover vs. noncrossover outcomes at meiotic recombination hotspots in mouse

Esther de Boer;Maria Jasin;Scott Keeney;

10.1101/022830 — Genetics — Posted on 2015-07-19

91 Scalable multi whole-genome alignment using recursive exact matching

Jasper Linthorst;Marc Hulsman;Henne Holstege;Marcel Reinders;

10.1101/022715 — Bioinformatics — Posted on 2015-07-17

92 Tools and techniques for computational reproducibility

Stephen R Piccolo;Michael B Frampton;

10.1101/022707 — Bioinformatics — Posted on 2015-07-17

93 MuCor: Mutation Aggregation and Correlation

Karl W Kroll;Ann-Katherin Eisfeld;Gerard Lozanski;Clara D Bloomfield;John C Byrd;James S Blachly;

10.1101/022780 — Bioinformatics — Posted on 2015-07-19

94 CUA: a Flexible and Comprehensive Codon Usage Analyzer

ZHENGUO ZHANG;

10.1101/022814 — Bioinformatics — Posted on 2015-07-19

95 Polymorphisms in oxidative pathway related genes and susceptibility to inflammatory bowel disease

Nezha Senhaji;Sellama Nadifi;Aurora Serrano;Daniel León Rodríguez;Nadia Serbati;Mehdi Karkouri;Wafaa Badre;Javier Martin;

10.1101/022681 — Genetics — Posted on 2015-07-17

96 The C. elegans ephrin EFN-4 functions non-cell autonomously with heparan sulfate proteoglycans to promote axon outgrowth and branching

Alicia A Schwieterman;Alyse N Steves;Vivian Yee;Cory J Donelson;Aaron Pital;Taylor Voyles;Austin M Howard;Danielle E Ereddia;Kelsie S Effrein;Jonathan L McMurry;Brian D Ackley;Andrew D Chisholm;Martin L Hudson;

10.1101/022756 — Developmental Biology — Posted on 2015-07-17

97 Cancer evolution simulation identifies possible principles underlying intratumor heterogeneity

Atsushi Niida;Satoshi Ito;Georg Tremmel;Seiya Imoto;Ryutaro Uchi;Yusuke Takahashi;Koshi Mimori;Satoru Miyano;

10.1101/022806 — Cancer Biology — Posted on 2015-07-20

98 Cancer evolution simulation identifies possible principles underlying intratumor heterogeneity

Atsushi Niida;Satoshi Ito;Georg Tremmel;Seiya Imoto;Ryutaro Uchi;Yusuke Takahashi;Koshi Mimori;Satoru Miyano;

10.1101/022806 — Cancer Biology — Posted on 2015-07-17

99 Adaptive variation in human toll-like receptors is contributed by introgression from both Neandertals and Denisovans

Michael Dannemann;Aida M. Andrés;Janet Kelso;

10.1101/022699 — Evolutionary Biology — Posted on 2015-07-16

100 A profile-based method for identifying functional divergence of orthologous genes in bacterial genomes

Nicole E Wheeler;Lars Barquist;Robert A Kingsley;Paul P Gardner;

10.1101/022616 — Bioinformatics — Posted on 2015-07-16

101 metaCCA: Summary statistics-based multivariate meta-analysis of genome-wide association studies using canonical correlation analysis

Anna Cichonska;Juho Rousu;Pekka Marttinen;Antti J Kangas;Pasi Soininen;Terho Lehtimäki;Olli T Raitakari;Marjo-Riitta Järvelin;Veikko Salomaa;Mika Ala-Korpela;Samuli Ripatti;Matti Pirinen;

10.1101/022665 — Bioinformatics — Posted on 2015-07-16

102 Comprehensive mapping of mammalian transcriptomes identifies conserved genes associated with different cell differentiation states

Yang Yang;Yu-Cheng Thomas Yang;Jiapei Yuan;Xiaohua Shen;Zhi John Lu;Jingyi Jessica Li;

10.1101/022608 — Systems Biology — Posted on 2015-07-15

103 Investigating the Evolutionary Importance of Denisovan Introgressions in Papua New Guineans and Australians

Ya Hu;Qiliang Ding;Yi Wang;Shuhua Xu;Yungang He;Minxian Wang;Jiucun Wang;Li Jin;

10.1101/022632 — Genomics — Posted on 2015-07-15

104 Monoallelic methylation and allele specific expression in a social insect

Zoe N Lonsdale;Kate Lee;Maria Kyriakidou;Harindra Amarasinghe;Despina Nathanael;Eamonn B Mallon;

10.1101/022657 — Evolutionary Biology — Posted on 2015-07-15

105 Inference of super-exponential human population growth via efficient computation of the site frequency spectrum for generalized models

Feng Gao;Alon Keinan;

10.1101/022574 — Evolutionary Biology — Posted on 2015-07-15

106 Diversity waves in collapse-driven population dynamics

Sergei Maslov;Kim Sneppen;

10.1101/022566 — Ecology — Posted on 2015-07-15

107 Floral resource-landscapes and pollinator-mediated interactions in plant communities

Henning Nottebrock;Baptiste Schmid;Katharina Mayer;Céline Devaux;Karen J. Esler;Katrin Boehning-Gaese;Matthias Schleuning;Jörn Pagel;Frank Schurr;

10.1101/022533 — Ecology — Posted on 2015-07-16

108 Evolution-Based Functional Decomposition of Proteins

Olivier Rivoire;Kimberly A. Reynolds;Rama Ranganathan;

10.1101/022525 — Biochemistry — Posted on 2015-07-15

109 Diagnostic Assessment of Osteosarcoma Chemoresistance Based on Virtual Clinical Trials

Katarzyna A Rejniak;Mark C Lloyd;Damon R Reed;Marilyn M Bui;

10.1101/022467 — Systems Biology — Posted on 2015-07-13

110 Fundamental Structure and Modulation of Neuronal Excitability: Synaptic Control of Coding, Resonance, and Network Synchronization

Christoph Kirst;Julian Ammer;Felix Felmy;Andreas Herz;Martin Stemmler;

10.1101/022475 — Neuroscience — Posted on 2015-07-13

111 Endocannabinoids regulate mAChR-evoked theta rhythm IPSCs in hippocampus

Ai-Hui Tang;Daniel A Nagode;Bradley E Alger;

10.1101/022442 — Neuroscience — Posted on 2015-07-13

112 The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh.

James Boocock;David Chagné;Tony R Merriman;Mik Black;

10.1101/021857 — Genomics — Posted on 2015-07-15

113 The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh.

James Boocock;David Chagné;Tony R Merriman;Mik Black;

10.1101/021857 — Genomics — Posted on 2015-07-13

114 Accelerating Protein Structure Prediction using Particle Swarm Optimization on GPU

Hamed Khakzad;Yasaman Karami;Seyed Shahriar ARAB;

10.1101/022434 — Bioinformatics — Posted on 2015-07-13

115 Gibbs Free Energy of Protein-Protein Interactions Reflects Tumor Stage

Edward Rietman;Alex Bloemendal;John Platig;Jack Tuszynski;Giannoula Lakka Klement;

10.1101/022491 — Cancer Biology — Posted on 2015-07-13

116 A max-margin model for predicting residue-base contacts in protein-RNA interactions

Kengo Sato;Shunya Kashiwagi;Yasubumi Sakakibara;

10.1101/022459 — Bioinformatics — Posted on 2015-07-13

117 Haplotypes of common SNPs can explain missing heritability of complex diseases

Gaurav Bhatia;Alexander Gusev;Po-Ru Loh;Bjarni J Vilhjálmsson;Stephan Ripke;Shaun Purcell;Eli Stahl;Mark Daly;Teresa R de Candia;Kenneth S Kendler;Michael C O'Donovan;Sang Hong Lee;Naomi R Wray;Benjamin M Neale;Matthew C Keller;Noah A Zaitlen;Bogdan Pasaniuc;Jian Yang;Alkes L Price;Schizophrenia Working Group Psychiatric Genomics C;

10.1101/022418 — Genetics — Posted on 2015-07-12

118 Maize pan-transcriptome provides novel insights into genome complexity and quantitative trait variation

Minliang Jin;Haijun Liu;Cheng He;Junjie Fu;Yingjie Xiao;Yuebin Wang;Weibo Xie;Guoying Wang;Jianbing Yan;

10.1101/022384 — Genetics — Posted on 2015-07-12

119 Gctf: real-time CTF determination and correction

Kai Zhang;

10.1101/022376 — Biophysics — Posted on 2015-07-14

120 Gctf: real-time CTF determination and correction

Kai Zhang;

10.1101/022376 — Biophysics — Posted on 2015-07-12

121 Graphene oxide chemically decorated with hybrid Ag-Ru/chitosan nanoparticles: fabrication and properties

Murugan Veerapandian;Suresh Neethirajan;

10.1101/022400 — Bioengineering — Posted on 2015-07-12

122 Accelerating Scientific Publication in Biology

Ronald D Vale;

10.1101/022368 — Scientific Communication and Education — Posted on 2015-07-11

123 Coevolution of male and female reproductive traits drive cascading reinforcement in Drosophila yakuba

Aaron A Comeault;Aarti Venkat;Daniel R Matute;

10.1101/022244 — Evolutionary Biology — Posted on 2015-07-10

124 EC-PSI: Associating Enzyme Commission Numbers with Pfam Domains

Seyed Ziaeddin Alborzi;Marie-Dominique Devignes;David W. RITCHIE;

10.1101/022343 — Bioinformatics — Posted on 2015-07-10

125 Automated and accurate estimation of gene family abundance from shotgun metagenomes

Stephen Nayfach;Patrick H. Bradley;Stacia K. Wyman;Timothy J. Laurent;Alex Williams;Jonathan A. Eisen;Katherine S. Pollard;Thomas J. Sharpton;

10.1101/022335 — Bioinformatics — Posted on 2015-07-10

126 Joint estimation of contamination, error and demography for nuclear DNA from ancient humans

Fernando Racimo;Gabriel Renaud;Montgomery Slatkin;

10.1101/022285 — — Posted on 2015-07-10

127 Protein binding and methylation on looping chromatin accurately predict distal regulatory interactions

Sean Whalen;Rebecca M. Truty;Katherine S. Pollard;

10.1101/022293 — Bioinformatics — Posted on 2015-07-09

128 Whole genome sequence analyses of Western Central African Pygmy hunter-gatherers reveal a complex demographic history and identify candidate genes under positive natural selection

PingHsun Hsieh;Krishna R Veeramah;Joseph Lachance;Sarah A Tishkoff;Jeffrey D Wall;Michael F Hammer;Ryan N Gutenkunst;

10.1101/022194 — Genomics — Posted on 2015-07-08

129 Simple multi-trait analysis identifies novel loci associated with growth and obesity measures

Xia Shen;Xiao Wang;Zheng Ning;Yakov Tsepilov;Masoud Shirali;Blair H. Smith;Lynne J. Hocking;Sandosh Padmanabhan;Caroline Hayward;David J. Porteous;Yudi Pawitan;Chris S. Haley;Yurii S. Aulchenko;Generation Scotland;

10.1101/022269 — Genetics — Posted on 2015-07-08

130 Eukaryotic core histone diversification in light of the histone doublet and DNA topo II genes of Marseilleviridae

Albert J Erives;

10.1101/022236 — Evolutionary Biology — Posted on 2015-07-08

131 How competition affects evolutionary rescue

Matthew Miles Osmond;Claire de Mazancourt;

10.1101/022202 — Evolutionary Biology — Posted on 2015-07-08

132 Coalescent models for developmental biology and the spatio-temporal dynamics of growing tissues.

Patrick Smadbeck;Michael P.H. Stumpf;

10.1101/022251 — Developmental Biology — Posted on 2015-07-09

133 HTS-IBIS: fast and accurate inference of binding site motifs from HT-SELEX data

Yaron Orenstein;Ron Shamir;

10.1101/022277 — Bioinformatics — Posted on 2015-07-08

134 Tomato I2 immune receptor can be engineered to confer partial resistance to the oomycete Phytophthora infestans in addition to the fungus Fusarium oxysporum

Artemis Giannakopoulou;John F. C. Steele;Maria Eugenia Segretin;Tolga O. Bozkurt;Ji Zhou;Silke Robatzek;Mark J. Banfield;Marina Pais;Sophien Kamoun;

10.1101/022079 — Plant Biology — Posted on 2015-07-07

135 TreeQTL: hierarchical error control for eQTL findings

Christine Peterson;Marina Bogomolov;Yoav Benjamini;Chiara Sabatti;

10.1101/021170 — Genomics — Posted on 2015-07-07

136 High Frequency Haplotypes are Expected Events, not Historical Figures

Elsa G Guillot;Murray P Cox;

10.1101/022160 — Genetics — Posted on 2015-07-07

137 Low but significant genetic differentiation underlies biologically meaningful phenotypic divergence in a large Atlantic salmon population

Tutku Aykanat;Susan E Johnston;Panu Orell;Eero Niemelä;Jaakko Erkinaro;Craig R Primmer;

10.1101/022178 — Evolutionary Biology — Posted on 2015-07-07

138 Taxonomy - for Computers

Nico Franz;Beckett Sterner;

10.1101/022145 — Evolutionary Biology — Posted on 2015-07-10

139 Taxonomy - for Computers

Nico Franz;Beckett Sterner;

10.1101/022145 — Evolutionary Biology — Posted on 2015-07-09

140 Taxonomy - for Computers

Nico Franz;Beckett Sterner;

10.1101/022145 — Evolutionary Biology — Posted on 2015-07-08

141 Taxonomy - for Computers

Nico Franz;Beckett Sterner;

10.1101/022145 — Evolutionary Biology — Posted on 2015-07-08

142 The relationship between interpregnancy interval (IPI) and mother’s preceding pregnancies (PP)

Michel C Vernier;Michael Schulzer;Pierre Vernier;

10.1101/022111 — Developmental Biology — Posted on 2015-07-07

143 Learning from heterogeneous data sources: an application in spatial proteomics

Lisa M Breckels;Sean Holden;David Wojnar;Claire M Mulvey;Andy Christoforou;Arnoud J Groen;Matthew WB Trotter;Oliver Kohlbacher;Kathryn S Lilley;Laurent Gatto;

10.1101/022152 — Bioinformatics — Posted on 2015-07-16

144 Learning from heterogeneous data sources: an application in spatial proteomics

Lisa M Breckels;Sean Holden;David Wojnar;Claire M Mulvey;Andy Christoforou;Arnoud J Groen;Matthew WB Trotter;Oliver Kohlbacher;Kathryn S Lilley;Laurent Gatto;

10.1101/022152 — Bioinformatics — Posted on 2015-07-07

145 Automated segmentation of skin strata in reflectance confocal microscopy depth stacks

Samuel Hames;Marco Ardigò;H. Peter Soyer;Andrew P. Bradley;Tarl W. Prow;

10.1101/022137 — Bioengineering — Posted on 2015-07-07

146 Structure and evolutionary history of a large family of NLR proteins in the zebrafish

Kerstin Howe;Philipp H Schiffer;Julia Zielinski;Thomas Wiehe;Gavin K Laird;John Marioni;Onuralp Soylemez;Fyodor Kondrashov;Maria Leptin;

10.1101/022061 — Evolutionary Biology — Posted on 2015-07-07

147 Structure and evolutionary history of a large family of NLR proteins in the zebrafish

Kerstin Howe;Philipp H Schiffer;Julia Zielinski;Thomas Wiehe;Gavin K Laird;John Marioni;Onuralp Soylemez;Fyodor Kondrashov;Maria Leptin;

10.1101/022061 — Evolutionary Biology — Posted on 2015-07-07

148 A New method to detect Event-Related Potentials based on Pearson’s Correlation

Patrizio Tressoldi;William Giroldini;Luciano Pederzoli;Marco Bilucaglia;Simone Melloni;

10.1101/022046 — Neuroscience — Posted on 2015-07-06

149 On the dimensionality of olfactory space

Marcelo O Magnasco;Andreas Keller;Leslie B Vosshall;

10.1101/022103 — Neuroscience — Posted on 2015-07-06

150 How competition governs whether moderate or aggressive treatment minimizes antibiotic resistance

Caroline Colijn;Ted Cohen;

10.1101/021998 — Evolutionary Biology — Posted on 2015-07-06

151 The Effect of Horizontal Gene Transfer on the Dynamics of Antibiotic Drug Resistance in a Unicellular Population with a Dynamic Fitness Landscape, Repression and De-repression

Yoav Atsmon-Raz;Nathaniel Wagner;Emanuel David Tannenbaum;

10.1101/022012 — Evolutionary Biology — Posted on 2015-07-06

152 Life-span development of functional brain networks as assessed with minimum spanning tree analysis of resting state EEG.

Dirk Smit;Eco J.C. de Geus;Maria Boersma;Dorret I Boomsma;Cornelis J Stam;

10.1101/022038 — Neuroscience — Posted on 2015-07-06

153 Flawed evidence for convergent evolution of the circadian CLOCK gene in mole-rats

Frédéric Delsuc;

10.1101/022004 — Evolutionary Biology — Posted on 2015-07-06

154 The role of recombination in evolutionary rescue

Hildegard Uecker;Joachim Hermisson;

10.1101/022020 — Evolutionary Biology — Posted on 2015-07-06

155 The role of recombination in evolutionary rescue

Hildegard Uecker;Joachim Hermisson;

10.1101/022020 — Evolutionary Biology — Posted on 2015-07-06

156 Computing the Internode Certainty and related measures from partial gene trees.

Kassian Kobert;Leonidas Salichos;Antonis Rokas;Alexandros Stamatakis;

10.1101/022053 — Evolutionary Biology — Posted on 2015-07-06

157 Fluctuating fitness shapes the clone size distribution of immune repertoires

Jonathan Desponds;Thierry Mora;Aleksandra Walczak;

10.1101/021923 — Immunology — Posted on 2015-07-05

158 Worldwide patterns of human epigenetic variation

Oana Carja;Julia L MacIsaac;Sarah M Mah;Brenna M Henn;Michael S Kobor;Marcus W Feldman;Hunter B Fraser;

10.1101/021931 — Genomics — Posted on 2015-07-05

159 How obstacles perturb population fronts and alter their genetic structure

Wolfram Moebius;Andrew W. Murray;David R. Nelson;

10.1101/021964 — Evolutionary Biology — Posted on 2015-07-05

160 On the identifiability of transmission dynamic models for infectious diseases

Jarno Lintusaari;Michael U. Gutmann;Samuel Kaski;Jukka Corander;

10.1101/021972 — Bioinformatics — Posted on 2015-07-05

161 SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis

Benjamin K Johnson;Matthew B Scholz;Tracy K Teal;Robert B Abramovitch;

10.1101/021915 — Bioinformatics — Posted on 2015-07-08

162 SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis

Benjamin K Johnson;Matthew B Scholz;Tracy K Teal;Robert B Abramovitch;

10.1101/021915 — Bioinformatics — Posted on 2015-07-05

163 Livestock market data for modeling disease spread among US cattle

Ian T. Carroll;Shweta Bansal;

10.1101/021980 — Bioinformatics — Posted on 2015-07-05

164 Cellular Population Dynamics Control the Robustness of the Stem Cell Niche

Adam L MacLean;Paul Kirk;Michael PH Stumpf;

10.1101/021881 — Systems Biology — Posted on 2015-07-02

165 Why clinical trials are terminated

Theodore R. Pak;Maria Rodriguez;Frederick P. Roth;

10.1101/021543 — Scientific Communication and Education — Posted on 2015-07-02

166 Regulation of yefM/yoeB toxin antitoxin system is independent of ppGpp and inorganic polyphosphate in Escherichia coli.

Bhaskar Chandra Mohan Ramisetty;

10.1101/021162 — Microbiology — Posted on 2015-07-02

167 Accounting for genotype uncertainty in the estimation of allele frequencies in autopolyploids

Paul D Blischak;Laura S Kubatko;Andrea D Wolfe;

10.1101/021907 — Evolutionary Biology — Posted on 2015-07-02

168 Heterogeneous generation of new cells in the adult echinoderm nervous system

Vladimir Mashanov;Olga Zueva;Jose E Garcia-Arraras;

10.1101/021840 — Developmental Biology — Posted on 2015-07-02

169 EVfold.org: Evolutionary Couplings and Protein 3D Structure Prediction

Robert Sheridan;Robert J. Fieldhouse;Sikander Hayat;Yichao Sun;Yevgeniy Antipin;Li Yang;Thomas Hopf;Debora S. Marks;Chris Sander;

10.1101/021022 — Bioinformatics — Posted on 2015-07-02

170 Origins of cell-to-cell variability, kinetic proof-reading and the robustness of MAPK signal transduction

Sarah Filippi;Chris Barnes;Paul Kirk;Takamasa Kudo;Siobhan McMahon;Takaho Tsuchiya;Takumi Wada;Shinya Kuroda;Michael Stumpf;

10.1101/021790 — Systems Biology — Posted on 2015-07-01

171 Species-level resolution of 16S rRNA gene amplicons sequenced through MinIONTM portable nanopore sequencer

Alfonso Benitez-Paez;Kevin Portune;Yolanda Sanz;

10.1101/021758 — Microbiology — Posted on 2015-07-01

172 The two-speed genomes of filamentous pathogens: waltz with plants

Suomeng Dong;Sylvain Raffaele;Sophien Kamoun;

10.1101/021774 — Genomics — Posted on 2015-07-01

173 Concerted activities of Mcm4, Sld3 and Dbf4 in control of origin activation and DNA replication fork progression

Yi-Jun Sheu;Justin B Kinney;Bruce Stillman;

10.1101/021832 — Genetics — Posted on 2015-07-01

174 The anatomical distribution of genetic associations

Alan B Wells;Nathan Kopp;Xiaoxiao Xu;David R O'Brien;Wei Yang;Arye Nehorai;Tracy L. Adair-Kirk;Raphael Kopan;Joseph D Dougherty;

10.1101/021824 — Genetics — Posted on 2015-07-01

175 Quantitative Relations in Protein and RNA Folding Deduced from Quantum Theory

Liaofu Luo;Jun Lv;

10.1101/021782 — Bioinformatics — Posted on 2015-07-02

176 Quantitative Relations in Protein and RNA Folding Deduced from Quantum Theory

Liaofu Luo;Jun Lv;

10.1101/021782 — Bioinformatics — Posted on 2015-07-01

177 Chromatin interactions correlate with local transcriptional activity in Saccharomyces cerevisiae

Zackary N. Scholl;Jianling Zhong;Alexander J. Hartemink;

10.1101/021725 — Bioinformatics — Posted on 2015-07-06

178 Chromatin interactions correlate with local transcriptional activity in Saccharomyces cerevisiae

Zackary N. Scholl;Jianling Zhong;Alexander J. Hartemink;

10.1101/021725 — Bioinformatics — Posted on 2015-07-01

179 The power of single molecule real-time sequencing technology in the de novo assembly of a eukaryotic genome

Hiroaki Sakai;Ken Naito;Eri Ogiso-Tanaka;Yu Takahashi;Kohtaro Iseki;Chiaki Muto;Kazuhito Satou;Kuniko Teruya;Akino Shiroma;Makiko Shimoji;Takashi Hirano;Takeshi Itoh;Akito Kaga;Norihiko Tomooka;

10.1101/021634 — Genomics — Posted on 2015-07-27

180 Life history evolution in response to changes in metapopulation structure in an arthropod herbivore

Annelies De Roissart;Nicky Wybouw;David Renault;Thomas Van Leeuwen;Dries Bonte;

10.1101/021683 — Evolutionary Biology — Posted on 2015-07-02

181 A simple method for automated equilibration detection in molecular simulations

John D Chodera;

10.1101/021659 — Biophysics — Posted on 2015-07-04

182 Improved ribosome-footprint and mRNA measurements provide insights into dynamics and regulation of yeast translation

David E Weinberg;Premal Shah;Stephen W Eichhorn;Jeffrey A Hussmann;Joshua B Plotkin;David P Bartel;

10.1101/021501 — Genomics — Posted on 2015-07-06

183 Some remarks on moments for stochastic chemical kinetics

Eduardo Sontag;Abhyudai Singh;

10.1101/021410 — Systems Biology — Posted on 2015-07-11

184 Discovery of methylation loci and analyses of differential methylation from replicated high-throughput sequencing data

Thomas J Hardcastle;

10.1101/021436 — Bioinformatics — Posted on 2015-07-21

185 Variation-preserving normalization unveils blind spots in gene expression profiling

Carlos P. Roca;Susana I. L. Gomes;Mónica J. B. Amorim;Janeck J. Scott-Fordsmand;

10.1101/021212 — Genomics — Posted on 2015-07-22

186 Correspondence between resting state activity and brain gene expression

Guang-Zhong Wang;T. Grant Belgard;Deng Mao;Leslie Chen;Stefano Berto;Todd Preuss;Hanzhang Lu;Daniel Geschwind;Genevieve Konopka;

10.1101/021071 — Neuroscience — Posted on 2015-07-10

187 Environmental fluctuations do not select for increased variation or population-based resistance in Escherichia coli

Shraddha Madhav Karve;Kanishka Tiwary;S Selveshwari;Sutirth Dey;

10.1101/021030 — Evolutionary Biology — Posted on 2015-07-30

188 Discrete Distributional Differential Expression (D3E) - A Tool for Gene Expression Analysis of Single-cell RNA-seq Data

Mihails Delmans;Martin Hemberg;

10.1101/020735 — Bioinformatics — Posted on 2015-07-25

189 Phylogenomic analysis of natural products biosynthetic gene clusters allows discovery of arseno-organic metabolites in model streptomycetes

Pablo Cruz-Morales;Johannes F. Kopp;Christian E. Martinez-Guerrero;Luis A. Yanez-Guerra;Nelly Selem-Mojica;Hilda E. Ramos-Aboites;Jorg Feldmann;Francisco Barona-Gomez;

10.1101/020503 — Genomics — Posted on 2015-07-06

190 Spatial extent of neighboring plants influences the strength of associational effects on mammal herbivory. Insights from a meta-analysis

Emilie Champagne;Jean-Pierre Tremblay;Steeve D Cote;

10.1101/019935 — Ecology — Posted on 2015-07-13

191 Spatial extent of neighboring plants influences the strength of associational effects on mammal herbivory. Insights from a meta-analysis

Emilie Champagne;Jean-Pierre Tremblay;Steeve D Cote;

10.1101/019935 — Ecology — Posted on 2015-07-13

192 Stable eusociality via maternal manipulation when resistance is costless

Mauricio González-Forero;

10.1101/019877 — Evolutionary Biology — Posted on 2015-07-26

193 Consistent inter-protocol differences in resting-state functional connectomes between normal aging and mild cognitive impairment

Angela Tam;Christian Dansereau;AmanPreet Badhwar;Pierre Orban;Sylvie Belleville;Howard Chertkow;Alain Dagher;Alexandru Hanganu;Oury Monchi;Pedro Rosa-Neto;Amir Shmuel;Seqian Wang;John Breitner;Pierre Bellec;Alzheimer's Disease Neuroimaging Initiative;

10.1101/019646 — Neuroscience — Posted on 2015-07-18

194 A vision for ubiquitous sequencing

Yaniv Erlich;

10.1101/019018 — Genomics — Posted on 2015-07-22

195 Site-specific amino-acid preferences are mostly conserved in two closely related protein homologs

Michael B Doud;Orr Ashenberg;Jesse Bloom;

10.1101/018457 — Evolutionary Biology — Posted on 2015-07-16

196 Ensembler: Enabling high-throughput molecular simulations at the superfamily scale

Daniel L Parton;Patrick B Grinaway;Sonya M Hanson;Kyle A Beauchamp;John D Chodera;

10.1101/018036 — Bioinformatics — Posted on 2015-07-18

197 Cis-regulatory changes associated with a recent mating system shift and floral adaptation in Capsella

Kim A Steige;Johan Reimegård;Daniel Koenig;Douglas G Scofield;Tanja Slotte;

10.1101/017749 — Evolutionary Biology — Posted on 2015-07-22

198 Genomic prediction of celiac disease targeting HLA-positive individuals

Gad Abraham;Alexia Rohmer;Jason A Tye-Din;Michael Inouye;

10.1101/017608 — Genomics — Posted on 2015-07-06

199 Genomic prediction of celiac disease targeting HLA-positive individuals

Gad Abraham;Alexia Rohmer;Jason A Tye-Din;Michael Inouye;

10.1101/017608 — Genomics — Posted on 2015-07-04

200 GERV: A Statistical Method for Generative Evaluation of Regulatory Variants for Transcription Factor Binding

Haoyang Zeng;Tatsunori Hashimoto;Daniel D. Kang;David K. Gifford;

10.1101/017392 — Bioinformatics — Posted on 2015-07-04

201 Dilp8 requires the neuronal relaxin receptor Lgr3 to couple growth to developmental timing

Andres Garelli;Fabiana Heredia;Andreia P. Casimiro;Andre Macedo;Catarina Nunes;Marcia Garcez;Angela R. Mantas Dias;Yanel A. Volonte;Takashi Koyama;Alisson M. Gontijo;

10.1101/017053 — Developmental Biology — Posted on 2015-07-18

202 A general theory of individuated multicellularity

Felipe A. Veloso;

10.1101/016840 — Developmental Biology — Posted on 2015-07-27

203 A general theory of individuated multicellularity

Felipe A. Veloso;

10.1101/016840 — Developmental Biology — Posted on 2015-07-21

204 A general theory of individuated multicellularity

Felipe A. Veloso;

10.1101/016840 — Developmental Biology — Posted on 2015-07-14

205 A general theory of individuated multicellularity

Felipe A. Veloso;

10.1101/016840 — Developmental Biology — Posted on 2015-07-06

206 A general theory of individuated multicellularity

Felipe A. Veloso;

10.1101/016840 — Developmental Biology — Posted on 2015-07-01

207 The fate of a mutation in a fluctuating environment

Ivana Cvijovic;Benjamin H. Good;Elizabeth R. Jerison;Michael M. Desai;

10.1101/016709 — Evolutionary Biology — Posted on 2015-07-16

208 Sensitivity analysis of Wnt β-catenin based transcription complex might bolster power-logarithmic psychophysical law and reveal preserved gene gene interactions

Shriprakash Sinha;

10.1101/015834 — Systems Biology — Posted on 2015-07-09

209 Controlling E. coli gene expression noise

Kyung Hyuk Kim;Kiri Choi;Bryan Bartley;Herbert M Sauro;

10.1101/013797 — Synthetic Biology — Posted on 2015-07-07

210 Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome

Sara Goodwin;James Gurtowski;Scott Ethe-Sayers;Panchajanya Deshpande;Michael Schatz;W Richard McCombie;

10.1101/013490 — Bioinformatics — Posted on 2015-07-15

211 Asynchronous Rate Chaos in Spiking Neuronal Circuits

Omri Harish;David Hansel;

10.1101/013375 — Neuroscience — Posted on 2015-07-01

212 Pre-synaptic inhibition of afferent feedback in the macaque spinal cord does not modulate with cycles of peripheral oscillations around 10 Hz

Ferran Galán;Stuart N Baker;

10.1101/012583 — Neuroscience — Posted on 2015-07-10

213 Synthesis of phylogeny and taxonomy into a comprehensive tree of life

Cody Hinchliff;Stephen A Smith;James F Allman;J Gordon Burleigh;Ruchi Chaudhary;Lyndon M Cognill;Keith A Crandall;Jiabin Deng;Bryan T Drew;Romina Gazis;Karl Gude;David S Hibbett;Laura A Katz;H Dail Laughinghouse IV;Emily Jane McTavish;Peter E. Midford;Christopher L Owen;Richard Ree;Jonathan A Rees;Doug E Soltis;Tiffani Williams;Karen Ann Cranston;