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Archive, 2017-04

3 Multiple P450s And Variation In Neuronal Genes Underpins The Response To The Insecticide Imidacloprid In A Population Of Drosophila melanogaster
Denecke, S.; Fusetto, R.; Martelli, F.; Giang, A.; Battlay, P.; Fournier-Level, A.; O'Hair, R.; Batterham, P.
10.1101/132373 — genetics — Posted on 2017-04-30
4 The promise of disease gene discovery in South Asia
Nakatsuka, N. J.; Moorjani, P.; Rai, N.; Sarkar, B.; Tandon, A.; Patterson, N.; Bhavani, G. S.; Girisha, K. M.; Mustak, M. S.; Srinivasan, S.; Kaushik, A.; Vahab, S. A.; Jagadeesh, S. M.; Satyamoorthy, K.; Singh, L.; Reich, D.; Thangaraj, K.
10.1101/047035 — evolutionary biology — Posted on 2017-04-30
6 Secondary Osteons Scale Allometrically In Mammalian Humerus And Femur
Felder, A. A.; Phillips, C.; Cornish, H.; Cooke, M.; Hutchinson, J. R.; Doube, M.
10.1101/131300 — zoology — Posted on 2017-04-30
7 Comparative Genomics Of Two Sequential Candida glabrata Clinical Isolates
Vale-Silva, L. A.; Beaudoing, E.; Tran, V. D. T.; Sanglard, D.
10.1101/132464 — genomics — Posted on 2017-04-30
9 Meiotic Genes In Colpodean Ciliates Support Secretive Sexuality
Dunthorn, M.; Zufall, R. A.; Chi, J.; Paszkiewicz, K.; Moore, K.; Mahe, F.
10.1101/132472 — evolutionary biology — Posted on 2017-04-30
11 Caterpillars lack a resident gut microbiome
Hammer, T. J.; Janzen, D. H.; Hallwachs, W.; Jaffe, S. L.; Fierer, N.
10.1101/132522 — ecology — Posted on 2017-04-30
14 Proof Of Concept: Molecular Prediction Of Schizophrenia Risk
Docherty, A. R.; Moscati, A.; Adkins, D. E.; Wallace, G. T.; Kumar, G.; Riley, B. P.; Corvin, A.; O'Neill, F. A.; Gill, M.; Kendler, K. S.; Sullivan, P. F.; Fanous, A. H.; Bacanu, S.-A.
10.1101/129213 — genomics — Posted on 2017-04-30
15 The Evolution Of Covert Signaling
Smaldino, P. E.; Flamson, T. J.; McElreath, R.
10.1101/132407 — evolutionary biology — Posted on 2017-04-30
16 A High Resolution Whole Brain Imaging Using Oblique Light Sheet Tomography
Narasimhan, A.; Mizrachi, J.; Umadevi Venkatraju, K.; Albeanu, D. F.; Osten, P.
10.1101/132423 — neuroscience — Posted on 2017-04-30
17 Transcription Factors Orchestrate Dynamic Interplay Between Genome Topology And Gene Regulation During Cell Reprogramming
Stadhouders, R.; Vidal, E.; Serra, F.; Stefano, B. D.; Dily, F. L.; Quilez, J.; Gomez, A.; Collombet, S.; Berenguer, C.; Cuartero, Y.; Hecht, J.; Filion, G.; Beato, M.; Marti-Renom, M. A.; Graf, T.
10.1101/132456 — molecular biology — Posted on 2017-04-30
18 Cells From The Same Lineage Switch From Reduction To Enhancement Of Size Variability In Arabidopsis Sepals
Tsugawa, S.; Hervieux, N.; Kierzkowski, D.; Routier-Kierzkowska, A.-L.; Sapala, A.; Hamant, O.; Smith, R. S.; Roeder, A. H. K.; Boudaoud, A.; Li, C.-B.
10.1101/132431 — developmental biology — Posted on 2017-04-30
19 Environmental Conditions And Agronomic Practices Induce Consistent Global Changes In DNA Methylation Patterns In Grapevine (Vitis vinifera cv Shiraz)
Xie, H.; Konate, M.; Sai, N.; Tesfamicael, K. G.; Cavagnaro, T.; Gilliham, M.; Breen, J.; Metcalfe, A.; DeBei, R.; Collins, C.; Rodriguez Lopez, C. M.
10.1101/127977 — plant biology — Posted on 2017-04-29
20 A simple modification of library length for highly divergent gene capture
Chen, X.; Ni, G.; He, K.; Ding, Z.-L.; Li, G.-M.; Adeola, A. C.; Murphy, R. W.; Wang, W.-Z.; Zhang, Y.-P.
10.1101/080689 — genomics — Posted on 2017-04-29
27 Evolutionarily Conserved Roles For Blood-Brain Barrier Xenobiotic Transporters In Endogenous Steroid Partitioning And Behavior
Hindle, S.; Munji, R.; Dolghih, E.; Gaskins, G.; Orng, S.; Ishimoto, H.; Soung, A.; DeSalvo, M.; Kitamoto, T.; Keiser, M.; Jacobson, M.; Daneman, R.; Bainton, R.
10.1101/131698 — neuroscience — Posted on 2017-04-29
28 Universal Patterns Of Selection In Cancer And Somatic Tissues
Martincorena, I.; Raine, K. M.; Gerstung, M.; Dawson, K. J.; Haase, K.; Van Loo, P.; Davies, H.; Stratton, M. R.; Campbell, P. J.
10.1101/132324 — genomics — Posted on 2017-04-29
29 Signaling Pathway Activities Improve Prognosis for Breast Cancer
Jiao, Y.; Hidalgo, M. R.; Cubuk, C.; Amadoz, A.; Carbonell-Caballero, J.; Vert, J.-P.; Dopazo, J.
10.1101/132357 — bioinformatics — Posted on 2017-04-29
31 Mycophenolate mofetil increases susceptibility toopportunistic fungal infection independent of lymphocytes
Gibson, R. H.; Hotham, R.; Bojarczuk, A.; Lewis, A.; Bielska, E.; May, R. C.; Elks, P.; Renshaw, S. A.; Johnston, S. A.
10.1101/131540 — immunology — Posted on 2017-04-29
33 Ranking quantitative resistance to Septoria tritici blotch in elite wheat cultivars using automated image analysis
Karisto, P.; Hund, A.; Yu, K.; Anderegg, J.; Walter, A.; Mascher, F.; McDonald, B. A.; Mikaberidze, A.
10.1101/129353 — plant biology — Posted on 2017-04-29
34 Causal epigenome-wide association study identifies CpG sites that influence cardiovascular disease risk
Richardson, T. G.; Zheng, J.; Davey Smith, G.; Timpson, N. J.; Gaunt, T. R.; Relton, C. L.; Hemani, G.
10.1101/132019 — epidemiology — Posted on 2017-04-29
37 Topical Silver Diamine Fluoride For Dental Caries Arrest In Preschool Children: A Randomized Controlled Trial
Milgrom, P.; Horst, J. A.; Ludwig, S.; Rothen, M.; Chaffee, B. W.; Lyalina, S.; Pollard, K.; DeRisi, J. L.; Mancl, L.
10.1101/131870 — clinical trials — Posted on 2017-04-29
40 A biological source of marine sedimentary iron oxides
Beam, J. P.; Scott, J. J.; McAllister, S. M.; Chan, C. S.; McManus, J.; Meysman, F. J.; Emerson, D.
10.1101/108621 — microbiology — Posted on 2017-04-28
42 MicroRNA perturbation of the MRN complex buffers DNA damage response from VEGF signaling
Espinosa-Diez, C.; Wilson, R.; Chatterjee, N.; Hudson, C.; Ruhl, R.; Hipfinger, C.; Helms, E.; Khan, O. F.; Anderson, D. G.; Anand, S.
10.1101/132258 — cancer biology — Posted on 2017-04-28
43 Emerging Electrical Properties of Graphene incorporated Photosynthetic Biofilms
Ray, S.; Sen, S.; Das, A.; Bose, A.; Bhattacharyya, A.; Das, A.; Chattopadhyay, S.; Patra, H. K.; Singha, S.; Singha, A.; Dasgupta, A. K.
10.1101/132225 — biophysics — Posted on 2017-04-28
45 Global analysis of plasma lipids identifies liver-derived acyl-carnitines as a fuel source for brown fat thermogenesis
Simcox, J.; Geoghegan, G.; Maschek, J. A.; Pasquali, M.; Miao, R.; Lee, S.; Jiang, L.; Huck, I.; Donato, A.; Apte, U.; Longo, N.; Rutter, J.; Cox, J.; Villanueva, C. J.
10.1101/132241 — biochemistry — Posted on 2017-04-28
54 Reducing gravity takes the bounce out of running
Polet, D. T.; Schroeder, R. T.; Bertram, J. E. A.
10.1101/123745 — physiology — Posted on 2017-04-28
55 Splice Expression Variation Analysis (SEVA) for Inter-tumor Heterogeneity of Gene Isoform Usage in Cancer
Afsari, B.; Guo, T.; Considine, M.; Florea, L.; Kelley, D.; Flam, E.; Ha, P.; Geman, D.; Ochs, M. F.; Califano, J. A.; Gaykalova, D. A.; Favorov, A. V.; Fertig, E. J.
10.1101/091637 — genomics — Posted on 2017-04-28
57 Altering Expression Of A Vacuolar Iron Transporter Doubles Iron Content In White Wheat Flour
Connorton, J. M.; Jones, E. R.; Rodriguez-Ramiro, I.; Fairweather-Tait, S.; Uauy, C.; Balk, J.
10.1101/131888 — plant biology — Posted on 2017-04-28
58 Mid-Infrared Free-Electron Laser-Evoked Discharge Of Crayfish Compound Eyes
Shishikura, F.; Zen, H.; Hayakawa, K.; Komatsuzaki, Y.; Hayakawa, Y.; Sakai, T.; Kii, T.; Ohgaki, H.
10.1101/131813 — physiology — Posted on 2017-04-28
59 Altered Expression Of A Unique Set Of Genes Reveals Complex Etiology Of Schizophrenia
Kumar, A.; Singh, H. N.; Pareek, V.; Raza, K.; Kumar, P.; Faiq, M. A.; Mochan, S.; Dantham, S.; Upadhyaya, A. D.
10.1101/131623 — neuroscience — Posted on 2017-04-28
60 Rapid Whole Brain Imaging Of Neural Activities In Freely Behaving Larval Zebrafish
Cong, L.; Wang, Z.; Chai, Y.; Hang, W.; Shang, C.; Yang, W.; Bai, L.; Du, J.; Wang, K.; Wen, Q.
10.1101/131532 — neuroscience — Posted on 2017-04-28
61 Visual Response Properties In The Three Layer Turtle Visual Cortex
Hoseini, M. S.; Pobst, J.; Wright, N. C.; Clawson, W.; Shew, W.; Wessel, R.
10.1101/131805 — neuroscience — Posted on 2017-04-28
63 A biological source of marine sedimentary iron oxides
Beam, J. P.; Scott, J. J.; McAllister, S. M.; Chan, C. S.; McManus, J.; Meysman, F. J.; Emerson, D.
10.1101/108621 — microbiology — Posted on 2017-04-28
64 Myotis rufoniger Genome Sequence and Analyses: M. rufoniger’s Genomic Feature and the Decreasing Effective Population Size of Myotis Bats
Bhak, Y.; Jeon, Y.; Jeon, S.; Chung, O.; Sungwoong, J.; Jun, J.; Kim, H.-M.; Cho, Y.; Yoon, C.; Lee, S.; Kang, J.-H.; Lim, J.-D.; An, J.; Cho, Y. S.; Ryu, D.-Y.; Bhak, J.
10.1101/131904 — genomics — Posted on 2017-04-28
67 Structural Basis Of STAT2 Recognition By IRF9 Reveals Molecular Insights Into ISGF3 Function
Rengachari, S.; Groiss, S.; Devos, J.; Caron, E.; Grandvaux, N.; Panne, D.
10.1101/131714 — biophysics — Posted on 2017-04-28
73 Intragenomic Redistribution Of Host Transcription Factor Binding With Toxoplasma gondii Infection
Ulahannan, N.; Suzuki, M.; Simoes-Pires, C. A.; Wicik, Z.; Wijetunga, N. A.; Croken, M. M.; Bhattacharyya, S.; Johnston, A. D.; Kong, Y.; Maqbool, S. B.; Verma, A.; Greally, J. M.
10.1101/132076 — genomics — Posted on 2017-04-28
80 TGF(beta) Mediated Structural Remodeling Facilitates Optic Fissure Fusion And The Necessity Of BMP Antagonism In This Process
Knickmeyer, M. D.; Mateo, J. L.; Eckert, P.; Roussa, E.; Rahhal, B.; Zuniga, A.; Krieglstein, K.; Wittbrodt, J.; Heermann, S.
10.1101/131599 — developmental biology — Posted on 2017-04-28
81 NFATc2 enhances tumor-initiating phenotypes through the NFATc2/SOX2/ALDH axis in lung adenocarcinoma
XIAO, Z.-J.; Liu, J.; Wang, S.-Q.; Zhu, Y.; Gao, X.-Y.; Tin, V. P.-C.; Qin, J.; Wang, J.-W.; Wong, M. P.
10.1101/131987 — cancer biology — Posted on 2017-04-28
89 Shortwave Infrared Fluorescence Imaging with the Clinically Approved Near-Infrared Dye Indocyanine Green
Carr, J. A.; Franke, D.; Caram, J. R.; Perkinson, C. F.; Askoxylakis, V.; Datta, M.; Fukumura, D.; Jain, R. K.; Bawendi, M. G.; Bruns, O. T.
10.1101/100768 — bioengineering — Posted on 2017-04-28
92 Gradients Of Rac1 Nanoclusters Support Spatial Patterns Of Rac1 Signaling
Remorino, A.; De Beco, S.; Cayrac, F.; Di Federico, F.; Cornilleau, G.; Gautreau, A.; Parrini, M. C.; Masson, J.-B.; Dahan, M.; Coppey, M.
10.1101/131227 — biophysics — Posted on 2017-04-28
93 Paternally inherited noncoding structural variants contribute to autism
Brandler, W. M.; Antaki, D.; Gujral, M.; Kleiber, M. L.; Maile, M. S.; Hong, O.; Chapman, T. R.; Tan, S.; Tandon, P.; Pang, T.; Tang, S. C.; Vaux, K. K.; Yang, Y.; Harrington, E.; Juul, S.; Turner, D. J.; Kingsmore, S. F.; Gleeson, J. G.; Kakaradov, B.; Telenti, A.; Venter, J. C.; Corominas, R.; Cormand, B.; Rueda, I.; Messer, K. S.; Nievergelt, C. M.; Arranz, M. J.; Courchesne, E.; Pierce, K.; Muotri, A. R.; Iakoucheva, L. M.; Hervas, A.; Corsello, C.; Sebat, J.
10.1101/102327 — genomics — Posted on 2017-04-27
100 Fast and simple analysis of MiSeq amplicon sequencing data with MetaAmp
Dong, X.; Kleiner, M.; Sharp, C. E.; Thorson, E.; Li, C.; Liu, D.; Strous, M.
10.1101/131631 — bioinformatics — Posted on 2017-04-27
103 Necroptosis promotes the Aging of the Male Reproductive System in Mice
Wang, X.; Li, D.; Meng, L.; Xu, T.; Su, Y.; Liu, X.; Zhang, Z.
10.1101/131672 — cell biology — Posted on 2017-04-27
104 The Ndc80 complex targets Bod1 to human mitotic kinetochores
Schleicher, K.; ten Have, S.; Porter, I. M.; Swedlow, J. R.
10.1101/131664 — cell biology — Posted on 2017-04-27
106 A Molecular Portrait Of De Novo Genes
Vakirlis, N.; Hebert, A. S.; Opulente, D. A.; Achaz, G.; Hittinger, C. T.; Fischer, G.; Coon, J. J.; Lafontaine, I.
10.1101/119768 — evolutionary biology — Posted on 2017-04-27
107 Cadmium-associated differential methylation throughout the placental genome: epigenome-wide association study of two US birth cohorts
Everson, T. M.; Punshon, T.; Jackson, B. P.; Hao, K.; Lambertini, L.; Chen, J.; Karagas, M. R.; Marsit, C. J.
10.1101/130286 — epidemiology — Posted on 2017-04-27
114 TOWARDS COORDINATED INTERNATIONAL SUPPORT OF CORE DATA RESOURCES FOR THE LIFE SCIENCES
Anderson, W.; Apweiler, R.; Bateman, A.; Bauer, G. A.; Berman, H.; Blake, J. A.; Blomberg, N.; Burley, S. K.; Cochrane, G.; Di Francesco, V.; Donohue, T.; Durinx, C.; Game, A.; Green, E.; Gojobori, T.; Goodhand, P.; Hamosh, A.; Hermjakob, H.; Kanehisa, M.; Kiley, R.; McEntyre, J.; McKibbin, R.; Miyano, S.; Pauly, B.; Perrimon, N.; Ragan, M. A.; Richards, G.; Teo, Y.-Y.; Westerfield, M.; Westhof, E.; Lasko, P. F.
10.1101/110825 — scientific communication and education — Posted on 2017-04-27
117 Visual Context Modulates Action Perception In 10-Month-Old Infants
Bache, C.; Noack, H.; Springer, A.; Stadler, W.; Kopp, F.; Lindenberger, U.; Werkle-Bergner, M.
10.1101/131524 — neuroscience — Posted on 2017-04-27
123 Structure-based analysis of CysZ-mediated cellular uptake of sulfate
Assur Sanghai, Z.; Liu, Q.; Clarke, O. B.; Leal Pinto, E.; Kloss, B.; Tabuso, S.; Love, J.; Punta, M.; Banerjee, S.; Rajashankar, K. R.; Rost, B.; Logothetis, D.; Quick, M.; Hendrickson, W. A.; Mancia, F.
10.1101/131318 — biophysics — Posted on 2017-04-27
124 Gradients Of Rac1 Nanoclusters Support Spatial Patterns Of Rac1 Signaling
Remorino, A.; De Beco, S.; Cayrac, F.; Di Federico, F.; Cornilleau, G.; Gautreau, A.; Parrini, M. C.; Masson, J.-B.; Dahan, M.; Coppey, M.
10.1101/131227 — biophysics — Posted on 2017-04-27
128 Heterogeneous Contribution of Microdeletions in the Development of Common Generalized and Focal epilepsies
Perez-Palma, E.; Helbig, I.; Klein, K. M.; Anttila, V.; Horn, H.; Reinthaler, E. M.; Gormley, P.; Ganna, A.; Byrnes, A.; Pernhorst, K.; Toliat, M. R.; EuroEPINOMICS-RE consortium, ; Italian League Against Epilepsy (LICE) consortium, ; Saarentaus, E.; Howrigan, D.; Hoffmann, P.; Miquel, J. F.; De Ferrari, G. V.; Nurnberg, P.; Lerche, H.; Zimprich, F.; Neubauer, B. A.; Becker, A.; Rosenow, F.; Perucca, E.; Zara, F.; Weber, Y.; Lal, D.
10.1101/131359 — genetics — Posted on 2017-04-27
129 Fast Activation Cycles Of Rac1 At The Lamellipodium Tip Trigger Membrane Protrusion
Mehidi, A.; Rossier, O.; Chazeau, A.; Biname, F.; Remorino, A.; Coppey, M.; Karatas, Z.; Sibarita, J.-B.; Moreau, V.; Giannone, G.
10.1101/130849 — cell biology — Posted on 2017-04-27
132 Predicting clinical outcomes from large scale cancer genomic profiles with deep survival models
Yousefi, S.; Amrollahi, F.; Amgad, M.; Dong, C.; Lewis, J. E.; Song, C.; Gutman, D. A.; Halani, S. H.; Enrique Velazquez Vega, J.; Brat, D. J.; Cooper, L. A.
10.1101/131367 — bioinformatics — Posted on 2017-04-27
135 Association mapping and haplotype analysis of the pre-harvest sprouting resistance locus Phs-A1 reveals a causal role of TaMKK3-A in global germplasm
Shorinola, O.; Balcarkova, B.; Hyles, J.; Tibbits, J. F. G.; Hayden, M. J.; Holusova, K.; Valarik, M.; Distelfeld, A.; Torada, A.; Barrero, J. M.; Uauy, C.
10.1101/131201 — plant biology — Posted on 2017-04-26
136 A Systematic Nomenclature for the Drosophila Ventral Nervous System
Court, R. C.; Armstrong, J. D.; Borner, J.; Card, G.; Costa, M.; Dickinson, M.; Duch, C.; Korff, W.; Mann, R.; Merritt, D.; Murphey, R.; Namiki, S.; Seeds, A.; Shepherd, D.; Shirangi, T.; Simpson, J.; Truman, J.; Tuthill, J.; Williams, D.
10.1101/122952 — neuroscience — Posted on 2017-04-26
138 Individual level reliability of PAS-induced neural plasticity
Kim, Y.; Ngo, J. P.; Deblieck, C.; Edwards, D. J.; Dobkin, B.; Wu, A. D.; Iacoboni, M.
10.1101/130856 — neuroscience — Posted on 2017-04-26
141 Genotype-by-Environment Interactions Affecting Heterosis in Maize
Li, Z.; Coffey, L.; Garfin, J.; Miller, N. D.; White, M. R.; Spalding, E. P.; Leon, N. d.; Kaeppler, S. M.; Schnable, P. S.; Springer, N. M.; Hirsch, C. N.
10.1101/131342 — genetics — Posted on 2017-04-26
142 The demographic history and mutational load of African hunter-gatherers and farmers
Lopez, M.; Kousathanas, A.; Quach, H.; Harmant, C.; Mouguiama-Daouda, P.; Hombert, J.-M.; Froment, A.; Perry, G. H.; Barreiro, L. B.; Verdu, P.; Patin, E.; Quintana-Murci, L.
10.1101/131219 — evolutionary biology — Posted on 2017-04-26
144 Distinct effects of tubulin isotype mutations on neurite growth in Caenorhabditis elegans
Zheng, C.; Diaz-Cuadros, M.; Jao, S. L.; Nguyen, K.; Hall, D. H.; Chalfie, M.
10.1101/131326 — cell biology — Posted on 2017-04-26
145 Epigenetic Reprogramming of Tissue-Specific Transcription Promotes Metastasis
Teng, S.; Li, Y.; Yang, M.; Qi, R.; Huang, Y.; Wang, Q.; Li, S.; Lin, K.; Cheng, Y.; Lu, Z. J.; Wang, D.
10.1101/131102 — cancer biology — Posted on 2017-04-26
146 Structure-based analysis of CysZ-mediated cellular uptake of sulfate
Liu, Q.; Clarke, O. B.; Leal Pinto, E.; Kloss, B.; Tabuso, S.; Love, J.; Punta, M.; Banerjee, S.; Rajashankar, K. R.; Rost, B.; Logothetis, D.; Quick, M.; Hendrickson, W. A.; Mancia, F.; Assur Sanghai, Z.
10.1101/131318 — biophysics — Posted on 2017-04-26
147 Clustering gene expression time series data using an infinite Gaussian process mixture model
McDowell, I. C.; Manandhar, D.; Vockley, C. M.; Schmid, A.; Reddy, T. E.; Engelhardt, B.
10.1101/131151 — bioinformatics — Posted on 2017-04-26
148 Photoacoustic molecular rulers based on DNA nanostructures
Joseph, J.; Koehler, P.; Zuehlsdorff, T. J.; Cole, D. J.; Baumann, K. N.; Weber, J.; Bohndiek, S. E.; Hernandez-Ainsa, S.
10.1101/125583 — bioengineering — Posted on 2017-04-26
154 Recombineering in Vibrio natriegens
Lee, H. H.; Ostrov, N.; Gold, M. A.; Church, G. M.
10.1101/130088 — synthetic biology — Posted on 2017-04-26
155 Co-localization of Conditional eQTL and GWAS Signatures in Schizophrenia
Dobbyn, A.; Huckins, L. M.; Boocock, J.; Sloofman, L. G.; Glicksberg, B. S.; Giambartolomei, C.; Hoffman, G.; Perumal, T.; Girdhar, K.; Jiang, Y.; Ruderfer, D. M.; Kramer, R. S.; Pinto, D.; the CommonMind Consortium, ; Akbarian, S.; Roussos, P.; Domenici, E.; Devlin, B.; Sklar, P.; Stahl, E. A.; Sieberts, S. K.
10.1101/129429 — genetics — Posted on 2017-04-26
156 Can Ebola Virus evolve to be less virulent in humans?
Sofonea, M. T.; Aldakak, L.; Boullosa, L. F. V. V.; Alizon, S.
10.1101/108589 — evolutionary biology — Posted on 2017-04-26
158 Ecological Network Metrics: Opportunities For Synthesis
Lau, M. K.; Borrett, S. R.; Baiser, B.; Gotelli, N.; Ellison, A. M.
10.1101/125781 — ecology — Posted on 2017-04-26
161 Pattern-Triggered Immunity And Cell Wall Integrity Maintenance Jointly Modulate Plant Stress Responses
Engelsdorf, T.; Gigli-Bisceglia, N.; Veerabagu, M.; McKenna, J. F.; Augstein, F.; van der Does, D.; Zipfel, C.; Hamann, T.
10.1101/130013 — plant biology — Posted on 2017-04-26
162 Molecular Mapping Of YrTZ2, A Stripe Rust Resistance Gene In Wild Emmer Accession TZ-2 And Its Comparative Analyses With Aegilops tauschii
Wang, Z.; Xie, J.; Guo, L.; Zhang, D.; Li, G.; Fang, T.; Chen, Y.; Li, J.; Wu, Q.; Lu, P.; Wang, Y.; Li, M.; Wu, H.; Zhang, Y.; Yang, W.; Luo, M.-C.; Fahima, T.; Liu, Z.
10.1101/131003 — plant biology — Posted on 2017-04-26
163 Tolerance To PVY Infection In Potato Is Conditioned By Perturbation Of Small RNA-Gibberellin Regulatory Network
Kriznik, M.; Petek, M.; Dobnik, D.; Ramsak, Z.; Baebler, S.; Pollmann, S.; Kreuze, J.; Zel, J.; Gruden, K.
10.1101/130757 — plant biology — Posted on 2017-04-26
164 Cross-Species Complementation Reveals Conserved Functions For EARLY FLOWERING 3 Between Monocots And Dicots
Huang, H.; Gehan, M.; Huss, S. E.; Alvarez, S.; Lizarraga, C.; Gruebbling, E. L.; Grier, J.; Naldrett, M. J.; Bindbeutel, R.; Evans, B. S.; Mockler, T. C.; Nusinow, D.
10.1101/131185 — plant biology — Posted on 2017-04-26
166 Arc Restores Juvenile Plasticity In Adult Mouse Visual Cortex
Jenks, K. R.; Kim, T.; Pastuzyn, E. D.; Okuno, H.; Taibi, A. V.; Bito, H.; Bear, M. F.; Shepherd, J. D.
10.1101/130880 — neuroscience — Posted on 2017-04-26
169 The human oral microbiome is shaped by shared environment rather than genetics: evidence from a large family of closely-related individuals
Shaw, L.; Ribeiro, A. L. R.; Levine, A. P.; Pontikos, N.; Balloux, F.; Segal, A. W.; Roberts, A. P.; Smith, A.
10.1101/131086 — microbiology — Posted on 2017-04-26
170 Environmental Perturbations Lead To Extensive Directional Shifts In RNA Processing
Richards, A. L.; Watza, D.; Findley, A.; Alazizi, A.; Wen, X.; Pai, A. A.; Pique-Regi, R.; Luca, F.
10.1101/119974 — genomics — Posted on 2017-04-26
177 Spatially Explicit Approach To Population Abundance Estimation In Field Surveys
Takashina, N.; Kusumoto, B.; Beger, M.; Rathnayake, S.; Possingham, H. P.
10.1101/131037 — ecology — Posted on 2017-04-26
180 A lncRNA/Lin28/Let7 Axis Coupled To DNA Methylation Fine Tunes The Dynamics Of A Cell State Transition
Li, M. A.; Amaral, P. P.; Cheung, P.; Bergmann, J. H.; Kinoshita, M.; Kalkan, T.; Ralser, M.; Robson, S.; von Meyenn, F.; Paramor, M.; Yang, F.; Chen, C.; Nichols, J.; Spector, D. L.; Kouzarides, T.; He, L.; Smith, A.
10.1101/131110 — cell biology — Posted on 2017-04-26
181 Genome-Scale Mutational Signatures Of Aflatoxin In Cells, Mice And Human Tumors
Huang, M. N.; Yu, W.; Teoh, W. W.; Ardin, M.; Jusakul, A.; Ng, A.; Boot, A.; Abedi-Ardekani, B.; Villar, S.; Myint, S. S.; Othman, R.; Poon, S. L.; Heguy, A.; Olivier, M.; Hollstein, M.; Tan, P.; Teh, B. T.; Sabapathy, K.; Zavadil, J.; Rozen, S.
10.1101/130179 — cancer biology — Posted on 2017-04-26
188 Dengue virus hijacks a noncanonical oxidoreductase function of a cellular oligosaccharyltransferase complex
Lin, D. L.; Cherepanova, N. A.; Bozzacco, L.; Macdonald, M. R.; Gilmore, R.; Tai, A.
10.1101/130914 — microbiology — Posted on 2017-04-25
190 Environmental Enrichment Normalizes Hippocampal Timing Coding in a Malformed Hippocampus
Hernan, A. E.; Mahoney, J. M.; Curry, W.; Richard, G.; Lucas, M. M.; Massey, A.; Holmes, G. L.; Scott, R. C.
10.1101/130450 — neuroscience — Posted on 2017-04-25
194 Assessing species biomass contributions in microbial communities via metaproteomics
Kleiner, M.; Thorson, E.; Sharp, C. E.; Dong, X.; Liu, D.; Li, C.; Strous, M.
10.1101/130575 — microbiology — Posted on 2017-04-25
196 Identification Of cis-Regulatory Mutations Generating De Novo Edges In Personalized Cancer Gene Regulatory Networks
Kalender Atak, Z.; Imrichova, H.; Svetlichnyy, D.; Hulselmans, G.; Christiaens, V.; Reumers, J.; Ceulemans, H.; Aerts, S.
10.1101/130641 — genomics — Posted on 2017-04-25
197 Duplications at 19q13.33 in patients with neurodevelopmental disorders
Perez-Palma, E.; Saarentaus, E.; Andrieux, J.; Ravoet, M.; De Ferrari, G. V.; Nuernberg, P.; Isidor, B.; Neubauer, B. A.; Lal, D.
10.1101/130377 — genetics — Posted on 2017-04-25
201 Ecological plant epigenetics: Evidence from model and non-model species, and the way forward
Richards, C. L.; Alonso, C.; Becker, C.; Bossdorf, O.; Bucher, E.; Colome-Tatche, M.; Durka, W.; Engelhardt, J.; Gaspar, B.; Gogol-Doring, A.; Grosse, I.; van Gurp, T. P.; Heer, K.; Kronholm, I.; Lampei, C.; Latzel, V.; Mirouze, M.; Opgenoorth, L.; Paun, O.; Prohaska, S.; Rensing, S. A.; Stadler, P.; Trucchi, E.; Ullrich, K.; Verhoeven, K. J. F.
10.1101/130708 — ecology — Posted on 2017-04-25
208 High-resolution single-cell sequencing of malaria parasites
Trevino, S. G.; Nkhoma, S. C.; Nair, S.; Daniel, B. J.; Moncada, K.; Khoswe, S.; Banda, R. L.; Nosten, F.; Cheeseman, I. H.
10.1101/130864 — genomics — Posted on 2017-04-25
210 Co-localization of Conditional eQTL and GWAS Signatures in Schizophrenia
Dobbyn, A.; Huckins, L. M.; Boocock, J.; Sloofman, L. G.; Glicksberg, B. S.; Giambartolomei, C.; Hoffman, G.; Perumal, T.; Girdhar, K.; Jiang, Y.; Ruderfer, D. M.; Kramer, R. S.; Pinto, D.; the CommonMind Consortium, ; Akbarian, S.; Roussos, P.; Domenici, E.; Devlin, B.; Sklar, P.; Stahl, E. A.; Sieberts, S. K.
10.1101/129429 — genetics — Posted on 2017-04-25
212 The Calcineurin-FoxO-MuRF1 Signaling Pathway Regulates Myofibril Integrity in Cardiomyocytes
Chen, J.-N.; Shimizu, H.; Langenbacher, A. D.; Huang, J.; Wang, K.; Otto, G.; Geisler, R.; Wang, Y.
10.1101/130831 — cell biology — Posted on 2017-04-25
215 Synaptophysin is a β-Amyloid Target that Regulates Synaptic Plasticity and Seizure Susceptibility in an Alzhiemer’s Model
Adams, D. J.; Shen, C.; Levenga, J.; Basta, T.; Eisenberg, S. P.; Mapes, J.; Hampton, L.; Grounds, K.; Hoeffer, C. A.; Stowell, M. H. B.
10.1101/129551 — neuroscience — Posted on 2017-04-25
217 Supercoiling DNA locates mismatches
Dittmore, A.; Brahmachari, S.; Takagi, Y.; Marko, J. F.; Neuman, K. C.
10.1101/130567 — molecular biology — Posted on 2017-04-25
221 Iroki: automatic customization for phylogenetic trees
Moore, R. M.; Harrison, A. O.; McAllister, S. M.; Marine, R. L.; Chan, C. S.; Wommack, K. E.
10.1101/106138 — bioinformatics — Posted on 2017-04-25
224 Dual Phenotype Of MDA-MB-468 Cancer Cells Reveals Mutual Regulation Of Tensin3 And Adhesion Plasticity
Vess, A.; Blache, U.; Leitner, L.; Kurz, A. R. M.; Ehrenpfordt, A.; Sixt, M.; Posern, G.
10.1101/130302 — cell biology — Posted on 2017-04-25
227 A Molecular Portrait Of De Novo Genes
Vakirlis, N.; Hebert, A. S.; Opulente, D. A.; Achaz, G.; Hittinger, C. T.; Fischer, G.; Coon, J. J.; Lafontaine, I.
10.1101/119768 — evolutionary biology — Posted on 2017-04-25
228 Empirical Bayes estimation of semi-parametric hierarchical mixture models for unbiased characterization of polygenic disease architectures
nishino, j.; Kochi, Y.; Shigemizu, D.; Kato, M.; Ikari, K.; Ochi, H.; Noma, H.; Matsui, K.; Morizono, T.; Boroevich, K. A. A.; Tsunoda, T.; Matsui, S.
10.1101/080945 — genomics — Posted on 2017-04-25
229 Iroki: automatic customization for phylogenetic trees
Moore, R. M.; Harrison, A. O.; McAllister, S. M.; Marine, R. L.; Chan, C. S.; Wommack, K. E.
10.1101/106138 — bioinformatics — Posted on 2017-04-25
231 Single Cell Phenotyping Reveals Heterogeneity among Haematopoietic Stem Cells Following Infection
MacLean, A. L.; Smith, M. A.; Liepe, J.; Sim, A.; Khorshed, R.; Rashidi, N. M.; Scherf, N.; Krinner, A.; Roeder, I.; Lo Celso, C.; Stumpf, M. P.
10.1101/080416 — systems biology — Posted on 2017-04-25
235 Image Processing and Quality Control for the first 10,000 Brain Imaging Datasets from UK Biobank
Alfaro-Almagro, F.; Jenkinson, M.; Bangerter, N. K.; Andersson, J. L.; Griffanti, L.; Douaud, G.; Sotiropoulos, S.; Jbabdi, S.; Hernandez Fernandez, M.; Vallee, E.; Vidaurre, D.; Webster, M.; McCarthy, P. D.; Rorden, C.; Daducci, A.; Alexander, D.; Zhang, H.; Dragonu, I.; Matthews, P.; Miller, K. L.; Smith, S. M.
10.1101/130385 — neuroscience — Posted on 2017-04-24
238 Loss of MECP2 leads to telomere dysfunction and neuronal stress
Lowry, W. E.; Ohashi, M.; Lee, P.; Fu, K.; Vargas, B.; Allen, D. E.; Cinkornpumin, J. K.; Salas, C.; Park, J. C.; Germanguz, I.; Chronis, K.; Kuoy, E.; Wu, T.; Lin, K.; Xiao, A.; Chen, L.; Tran, S.; Xiao, X.; Lin, L.; Jin, P.; Pellegrini, M.; Plath, K.
10.1101/130401 — developmental biology — Posted on 2017-04-24
243 Synaptophysin is a β-Amyloid Target that Regulates Synaptic Plasticity and Seizure Susceptibility in an Alzhiemer’s Model
Adams, D. J.; Shen, C.; Levenga, J.; Basta, T.; Eisenberg, S. P.; Mapes, J.; Hampton, L.; Grounds, K.; Hoeffer, C. A.; Stowell, M. H. B.
10.1101/129551 — neuroscience — Posted on 2017-04-24
245 Whole Genome Sequencing of Pharmacogenetic Drug Response in Racially and Ethnically Diverse Children with Asthma
Mak, A. C. Y.; White, M. J.; Szpiech, Z. A.; Eckalbar, W. L.; Oh, S. S.; Pino-Yanes, M.; Hu, D.; Huntsman, S.; Galanter, J.; Torgerson, D. G.; Chen Wu, A.; Himes, B. E.; Germer, S.; Vogel, J. M.; Bunting, K. L.; Eng, C.; Salazar, S.; Keys, K. L.; Nguyen, T. A.; Kwok, P.-Y.; Levin, A. M.; Celedon, J. C.; Forno, E.; Hakonarson, H.; Sleiman, P. M.; Dahlin, A.; Tantisira, K. G.; Weiss, S. T.; Serebrisky, D.; Brigino-Buenaventura, E.; Farber, H. J.; Meade, K.; Lenoir, M. A.; Avila, P. C.; Sen, S.; Thyne, S. M.; Rodriguez-Cintron, W.; Winkler, C. A.; Moreno-Estrada, A.; Sandoval, K.; Rodriguez-Santa
10.1101/128116 — genetics — Posted on 2017-04-24
248 Recombineering in Vibrio natriegens
Lee, H. H.; Ostrov, N.; Gold, M. A.; Church, G. M.
10.1101/130088 — synthetic biology — Posted on 2017-04-24
250 Recombineering in Vibrio natriegens
Lee, H. H.; Ostrov, N.; Gold, M. A.; Church, G. M.
10.1101/130088 — synthetic biology — Posted on 2017-04-24
256 Draft Genome Sequence Of A Candidatus Brocadia Bacterium Enriched From Tropical-Climate Activated Sludge
Liu, X.; Arumugam, K.; Natarajan, G.; Seviour, T.; Drautz-Moses, D. I.; Wuertz, S.; Law, Y.; Williams, R. B. H.
10.1101/123943 — microbiology — Posted on 2017-04-24
258 Extracellular Electron Transfer Powers Enterococcus faecalis Biofilm Metabolism
Keogh, D.; Lam, L. N.; Doyle, L.; Matysik, A.; Pavagadhi, S.; Umashankar, S.; Dale, J. L.; Boothroyd, C. B.; Dunny, G. M.; Swarup, S.; Williams, R. B. H.; Marsili, E.; Kline, K.
10.1101/130146 — microbiology — Posted on 2017-04-24
260 Mapping And Phasing Of Structural Variation In Patient Genomes Using Nanopore Sequencing
Cretu Stancu, M.; van Roosmalen, M. J.; Renkens, I.; Nieboer, M.; Middelkamp, S.; de Ligt, J.; Pregno, G.; Giachino, D.; Mandrile, G.; Espejo Valle-Inclan, J.; Korzelius, J.; de Bruijn, E.; Cuppen, E.; Talkowski, M. E.; Marschall, T.; de Ridder, J.; Kloosterman, W. P.
10.1101/129379 — genomics — Posted on 2017-04-24
262 Reassessment Of Lesion-Associated Gene And Variant Pathogenicity In Focal Human Epilepsies
Neupert, L. M.; Nothnagel, M.; May, P.; Palotie, A.; Daly, M.; Nurnberg, P.; Blumcke, I.; Lal, D.
10.1101/130203 — genetics — Posted on 2017-04-24
265 Genome-Wide Meta-Analyses Of Stratified Depression In Generation Scotland And UK Biobank
Hall, L. S.; Adams, M. J.; Arnau-Soler, A.; Clarke, T.-K.; Howard, D. M.; Zeng, Y.; Davies, G.; Hagenaars, S. P.; Fernandez-Pujals, A. M.; Gibson, J.; Wigmore, E. M.; Boutin, T. S.; Hayward, C.; Generation Scotland, ; MDD Working Group of the Psychiatric Genomics Cons, ; Porteous, D. J.; Deary, I. J.; Thomson, P. A.; Haley, C. S.; McIntosh, A. M.
10.1101/130229 — genetics — Posted on 2017-04-24
268 Gestational Age At Birth And Risk Of Intellectual Disability Without A Common Genetic Cause: Findings From The Stockholm Youth Cohort
Heuvelman, H.; Abel, K.; Wicks, S.; Gardner, R.; Johnstone, E.; Lee, B.; Magnusson, C.; Dalman, C.; Rai, D.
10.1101/129049 — epidemiology — Posted on 2017-04-24
269 Bank Vole Immunoheterogeneity May Limit Nephropatia Epidemica Emergence In A French Non-Endemic Region
Dubois, A.; Castel, G.; Murri, S.; Pulido, C.; Pons, J.-B.; Benoit, L.; Loiseau, A.; Lakhdar, L.; Galan, M.; Marianneau, P.; Charbonnel, N.
10.1101/130252 — ecology — Posted on 2017-04-24
276 Unexpected sequences and structures of mtDNA required for efficient transcription from the first heavy-strand promoter
Uchida, A.; Murugesapillai, D.; Wang, Y.; Lodeiro, M. F.; Prabhakar, S.; Arnold, J.; Maher, L. J.; Williams, M. C.; Cameron, C. E.
10.1101/129908 — biochemistry — Posted on 2017-04-24
284 Your favorite color makes learning more adaptable and precise
Farashahi, S.; Rowe, K.; Aslami, Z.; Lee, D.; Soltani, A.
10.1101/097741 — neuroscience — Posted on 2017-04-23
286 Type 1 diabetes genome-wide association analysis with imputation identifies five new risk regions
Cooper, N. J.; Wallace, C.; Burren, O. S.; Cutler, A.; Walker, N.; Todd, J. A.
10.1101/120022 — genomics — Posted on 2017-04-23
287 Genome sequencing reveals Zika virus diversity and spread in the Americas
Metsky, H. C.; Matranga, C. B.; Wohl, S.; Schaffner, S. F.; Freije, C. A.; Winnicki, S. M.; West, K.; Qu, J.; Baniecki, M. L.; Gladden-Young, A.; Lin, A. E.; Tomkins-Tinch, C. H.; Ye, S. H.; Park, D. J.; Luo, C. Y.; Barnes, K. G.; Shah, R. R.; Chak, B.; Barbosa-Lima, G.; Delatorre, E.; Vieira, Y. R.; Paul, L. M.; Tan, A. L.; Barcellona, C. M.; Porcelli, M. C.; Vasquez, C.; Cannons, A. C.; Cone, M. R.; Hogan, K. N.; Kopp, E. W.; Anzinger, J. J.; Garcia, K. F.; Parham, L. A.; Gelvez Ramirez, R. M.; Miranda Montoya, M. C.; Rojas, D. P.; Brown, C. M.; Hennigan, S.; Sabina, B.; Scotland, S.; Gangav
10.1101/109348 — genomics — Posted on 2017-04-23
288 Adaptive pathways of coral populations on the Great Barrier Reef
Matz, M. V.; Treml, E. A.; Aglyamova, G. V.; van Oppen, M. J. H.; Bay, L. K.
10.1101/114173 — evolutionary biology — Posted on 2017-04-23
289 Disabling Cas9 by an anti-CRISPR DNA mimic
Shing, J.; Jiang, F.; Liu, J.-J.; Bray, N. L.; Rauch, B. J.; Baik, S. H.; Nogales, E.; Bondy-Denomy, J.; Corn, J. E.; Doudna, J. A.
10.1101/129627 — biochemistry — Posted on 2017-04-23
293 Quantitative Assessment Of Cell Fate Decision Between Autophagy And Apoptosis
Liu, B.; Oltvai, Z.; Bayir, H.; Silverman, G.; Pak, S.; Perlmutter, D.; Bahar, I.
10.1101/129767 — systems biology — Posted on 2017-04-23
294 Salience network dynamics underlying successful resistance of temptation
Steimke, R.; Nomi, J. S.; Calhoun, V. D.; Stelzel, C.; Paschke, L. M.; Gaschler, R.; Walter, H.; Uddin, L. Q.
10.1101/129676 — neuroscience — Posted on 2017-04-23
296 Nitrogen-Fixing Populations Of Planctomycetes And Proteobacteria Are Abundant In The Surface Ocean
Delmont, T. O.; Quince, C.; Shaiber, A.; Esen, O. C.; Lee, S. T. M.; Lucker, S.; Eren, A. M.
10.1101/129791 — microbiology — Posted on 2017-04-23
298 Matrix Production In Bacillus subtilis Biofilms Is Localized To A Propagating Front
Srinivasan, S.; Vladescu, I. D.; Koehler, S. A.; Wang, X.; Mani, M.; Rubinstein, S. M.
10.1101/129825 — biophysics — Posted on 2017-04-23
302 Evolutionary footprints reveal insights into plant microRNA biogenesis
Chorostecki, U.; Moro, B.; Rojas, A.; Debernardi, J.; Schapire, A.; Notredame, C.; Palatnik, J. F.
10.1101/129684 — plant biology — Posted on 2017-04-22
307 c-Maf-dependent regulatory T cells mediate immunological tolerance to intestinal microbiota
Xu, M.; Pokrovskii, M.; Ding, Y.; Yi, R.; Au, C.; Galan, C.; Bonneau, R.; Littman, D. R.
10.1101/129601 — immunology — Posted on 2017-04-22
308 Disabling Cas9 by an anti-CRISPR DNA mimic
Shing, J.; Jiang, F.; Liu, J.-J.; Bray, N. L.; Rauch, B. J.; Baik, S. H.; Nogales, E.; Bondy-Denomy, J.; Corn, J. E.; Doudna, J. A.
10.1101/129627 — biochemistry — Posted on 2017-04-22
310 Finger recruitment patterns during mirror movements suggest two systems for hand recovery after stroke
Ejaz, N.; Xu, J.; Branscheidt, M.; Hertler, B.; Schambra, H.; Widmer, M.; Faria, A. V.; Harran, M.; Cortes, J. C.; Kim, N.; Kitago, T.; Celnik, P. A.; Luft, A.; Krakauer, J. W.; Diedrichsen, J.
10.1101/129510 — neuroscience — Posted on 2017-04-22
312 Inactivation of thermogenic UCP1 as a historical contingency in multiple placental mammal clades
Gaudry, M. J.; Jastroch, M.; Treberg, J. R.; Hofreiter, M.; Paijmans, J. L. A.; Starrett, J.; Wales, N.; Signore, A. V.; Springer, M. S.; Campbell, K. L.
10.1101/086819 — evolutionary biology — Posted on 2017-04-21
317 Rational Design of Evolutionarily Stable Microbial Kill Switches
Stirling, F.; Bitzan, L.; Oliver, J.; Way, J.; Silver, P. A.
10.1101/129445 — synthetic biology — Posted on 2017-04-21
321 No evidence for a bovine mastitis Escherichia coli pathotype
Leimbach, A.; Poehlein, A.; Vollmers, J.; Goerlich, D.; Daniel, R.; Dobrindt, U.
10.1101/096479 — genomics — Posted on 2017-04-21
324 Components Of Alcohol Use And All-Cause Mortality
Hartz, S.; Oehlert, M.; Horton, A. C.; Grucza, R.; Fisher, S. L.; Nelson, K. G.; Sumerall, S. W.; Neal, C.; Regnier, P.; Chen, G.; Williams, A.; Bhattarai, J.; Evanoff, B.; Bierut, L. J.
10.1101/129270 — epidemiology — Posted on 2017-04-21
325 Transcription factor activities enhance markers of drug response in cancer
Garcia-Alonso, L.; Iorio, F.; Matchan, A.; Fonseca, N.; Jaaks, P.; Falcone, F.; Bignell, G.; McDade, S. S.; Garnett, M. J.; Saez-Rodriguez, J.
10.1101/129478 — cancer biology — Posted on 2017-04-21
327 System Identification Using Compressed Sensing Reveals Signaling-Decoding System By Gene Expression
Tsuchiya, T.; Fujii, M.; Matsuda, N.; Kunida, K.; Uda, S.; Kubota, H.; Konishi, K.; Kuroda, S.
10.1101/129296 — systems biology — Posted on 2017-04-21
333 Insular Cortex Mediates Approach And Avoidance Responses To Social Affective Stimuli
Rogers, M. M.; Varela, J.; Gribbons, K. B.; Pierce, A. F.; McGoey, M. T.; Christianson, J.
10.1101/108506 — neuroscience — Posted on 2017-04-21
334 Single Molecule Fluorescence In Situ Hybridisation For Quantitating Post-Transcriptional Regulation In Drosophila Brains
Yang, L.; Titlow, J.; Ennis, D.; Smith, C.; Mitchell, J.; Young, F. L.; Waddell, S.; Ish-Horowicz, D.; Davis, I.
10.1101/128785 — neuroscience — Posted on 2017-04-21
335 Base-Specific Mutational Intolerance Near Splice-Sites Clarifies Role Of Non-Essential Splice Nucleotides
Zhang, S.; Samocha, K. E.; Rivas, M. A.; Karczewski, K. J.; Daly, E.; Schmandt, B.; Neale, B. M.; MacArthur, D. G.; Daly, M. J.
10.1101/129312 — genomics — Posted on 2017-04-21
337 CRISPR-Cas9 Screens In Human Cells And Primary Neurons Identify Modifiers Of C9orf72 Dipeptide Repeat Protein Toxicity
Haney, M. S.; Kramer, N. J.; Morgens, D. W.; Jovičić, A.; Couthouis, J.; Li, A.; Ousey, J.; Ma, R.; Bieri, G.; Bassik, M. C.; Gitler, A. D.
10.1101/129254 — genetics — Posted on 2017-04-21
338 A Standardized Framework For Representation Of Ancestry Data In Genomics Studies
Morales, J.; Bowler, E. H.; Buniello, A.; Cerezo, M.; Hall, P.; Harris, L. W.; Hastings, E.; Junkins, H. A.; Malangone, C.; McMahon, A. C.; Milano, A.; Welter, D.; Burdett, T.; Cunningham, F.; Flicek, P.; Parkinson, H.; Hindorff, L.; MacArthur, J. A. L.
10.1101/129395 — genetics — Posted on 2017-04-21
340 An Embryonic System To Assess Wnt Transcriptional Targets
Suresh, J.; Harmston, N.; Lim, K. K.; Kaur, P.; Jin, H. J.; Lusk, J. B.; Petretto, E.; Tolwinski, N. S.
10.1101/129056 — developmental biology — Posted on 2017-04-21
342 Reconstructing The Gigabase Plant Genome Of Solanum pennellii Using Nanopore Sequencing
Schmidt, M. H.- W.; Vogel, A.; Denton, A.; Istace, B.; Wormit, A.; van de Geest, H.; Bolger, M. E.; Alseekh, S.; Mass, J.; Pfaff, C.; Schurr, U.; Chetelat, R.; Maumus, F.; Aury, J.-M.; Fernie, A. R.; Zamir, D.; Bolger, A. M.; Usadel, B.
10.1101/129148 — genomics — Posted on 2017-04-21
343 Association Between Substance Use Disorder And Polygenic Liability To Schizophrenia
Hartz, S.; Horton, A. C.; Oehlert, M.; Carey, C. E.; Agrawal, A.; Bogdan, R.; Chen, L.-S.; Hancock, D. B.; Johnson, E. O.; Pato, C.; Pato, M.; Rice, J. P.; Bierut, L. J.
10.1101/129288 — genetics — Posted on 2017-04-21
346 Estimation of the dispersal distances of an aphid-borne virus in a patchy landscape
Pleydell, D. R. J.; Soubeyrand, S.; Dallot, S.; Labonne, G.; Chadoeuf, J.; Jacquot, E.; Thebaud, G.
10.1101/109561 — epidemiology — Posted on 2017-04-21
347 Estimation of immune cell content in tumour tissue using single-cell RNA-seq data
Schelker, M.; Feau, S.; Du, J.; Ranu, N.; Klipp, E.; MacBeath, G.; Schoeberl, B.; Raue, A.
10.1101/127001 — bioinformatics — Posted on 2017-04-21
348 A Fluorescent Split Aptamer for Visualizing RNA-RNA Assembly In Vivo
Alam, K. K.; Tawiah, K. D.; Lichte, M. F.; Porciani, D.; Burke, D. H.
10.1101/109306 — synthetic biology — Posted on 2017-04-21
354 Integrative Structural Brain Network Analysis In Diffusion Tensor Imaging
Chung, M. K.; Hanson, J. L.; Adluru, N.; Alexander, A. L.; Davidson, R. J.; Pollak, S. D.
10.1101/129015 — neuroscience — Posted on 2017-04-20
356 Improved maize reference genome with single molecule technologies
Jiao, Y.; Peluso, P.; Shi, J.; Liang, T.; Stitzer, M. C.; Wang, B.; Campbell, M.; Stein, J. C.; Wei, X.; Chin, C.-S.; Guill, K.; Regulski, M.; Kumari, S.; Olson, A.; Gent, J.; Schneider, K. L.; Wolfgruber, T. K.; May, M. R.; Springer, N. M.; Antoniou, E.; McCombie, R.; Presting, G. G.; McMullen, M.; Ross-Ibarra, J.; Dawe, R. K.; Hastie, A.; Rank, D. R.; Ware, D.
10.1101/079004 — genomics — Posted on 2017-04-20
357 The genetic legacy of Zoroastrianism in Iran and India: Insights into population structure, gene flow and selection.
Lopez, S.; Thomas, M. G.; van Dorp, L.; Ansari-Pour, N.; Stewart, S.; Jones, A. L.; Jelinek, E.; Chikhi, L.; Parfitt, T.; Bradman, N.; Weale, M. E.; Hellenthal, G.
10.1101/128272 — genomics — Posted on 2017-04-20
361 Role of somatostatin-positive cortical interneurons in the generation of sleep slow waves
Tononi, G.; Cirelli, C.; Funk, C. M.; Peelman, K.; Bellesi, M.; Marshall, W.
10.1101/088443 — neuroscience — Posted on 2017-04-20
364 Sofosbuvir protects Zika virus-infected mice from mortality, preventing short- and long-term sequela
Ferreira, A.; Valle, C.; Reis, P.; Barbosa-Lima, G.; Vieira, Y.; Mattos, M.; Silva, P.; Sacramento, C.; Neto, H.; Campanati, L.; Tanuri, A.; Bruning, K.; Bozza, F.; Bozza, P.; Souza, T. M. L.
10.1101/129197 — microbiology — Posted on 2017-04-20
365 Nanopore sequencing and assembly of a human genome with ultra-long reads
Jain, M.; Koren, S.; Quick, J.; Rand, A. C.; Sasani, T. A.; Tyson, J. R.; Beggs, A. D.; Dilthey, A. T.; Fiddes, I. T.; Malla, S.; Marriott, H.; Miga, K. H.; Nieto, T.; O'Grady, J.; Olsen, H. E.; Pedersen, B. S.; Rhie, A.; Richardson, H.; Quinlan, A.; Snutch, T. P.; Tee, L.; Paten, B.; Phillippy, A. M.; Simpson, J. T.; Loman, N. J.; Loose, M.
10.1101/128835 — genomics — Posted on 2017-04-20
366 Geographic range dynamics drove ancient hybridization in a lineage of angiosperms
Folk, R. A.; Visger, C. J.; Soltis, P. S.; Soltis, D. E.; Guralnick, R. P.
10.1101/129189 — evolutionary biology — Posted on 2017-04-20
368 Long-Term Memory In The Migration Movements Of Enucleated Amoeba proteus
Bringas, C.; Malaina, I.; Perez-Samartin, A.; Boyano, M. D.; Fedetz, M.; Perez-Yarza, G.; Cortes, J.; Martinez de la Fuente, I.
10.1101/125054 — systems biology — Posted on 2017-04-20
372 Development of a Self-Report Measure of Reward Sensitivity: A Test in Current and Former Smokers
Hughes, J. R.; Callas, P. W.; Priest, J. S.; Etter, J.-F.; Budney, A. J.; Sigmon, S. C.
10.1101/128793 — neuroscience — Posted on 2017-04-20
373 Integrative Structural Brain Network Analysis In Diffusion Tensor Imaging
Chung, M. K.; Hanson, J. L.; Adluru, N.; Alexander, A. L.; Davison, R. J.; Pollak, S. D.
10.1101/129015 — neuroscience — Posted on 2017-04-20
375 Increasing Suppression Of Saccade-Related Transients Along The Human Visual Hierarchy
Golan, T.; Davidesco, I.; Meshulam, M.; Groppe, D. M.; Megevand, P.; Yeagle, E. M.; Goldfinger, M. S.; Harel, M.; Melloni, L.; Schroeder, C. E.; Deouell, L. Y.; Mehta, A. D.; Malach, R.
10.1101/124867 — neuroscience — Posted on 2017-04-20
376 Rapid Sensing Of Volumetric Neural Activity Through Adaptive Remote Focusing
Zurauskas, M.; Barnstedt, O.; Frade-Rodriguez, M.; Waddell, S.; Booth, M. J.
10.1101/125070 — neuroscience — Posted on 2017-04-20
379 STRT-seq-2i: dual-index 5′ single cell and nucleus RNA-seq on an addressable microwell array
Hochgerner, H.; Lannerberg, P.; Hodge, R.; Mikes, J.; Heskol, A.; Hubschle, H.; Lin, P.; Picelli, S.; La Manno, G.; Ratz, M.; Dunne, J.; Husain, S.; Lein, E.; Srinivasan, M.; Zeisel, A.; Linnarsson, S.
10.1101/126268 — molecular biology — Posted on 2017-04-20
381 Microbial community assembly differs by mineral type in the rhizosphere
Whitman, T.; Neurath, R.; Perera, A.; Ning, D.; Zhou, J.; Nico, P.; Pett-Ridge, J.; Firestone, M.
10.1101/128850 — microbiology — Posted on 2017-04-20
382 Light Guided In-vivo Activation of Innate Immune Cells with Photocaged TLR 2/6 Agonist
Ryu, K. A.; McGonnigal, B.; Moore, T.; Mancini, R. J.; Esser-Kahn, A. P.
10.1101/128942 — immunology — Posted on 2017-04-20
383 Single-Virion Sequencing Of Lamivudine Treated HBV Populations Reveal Population Evolution Dynamics And Demographic History
Zhu, Y. O.; Aw, P. P.; de Sessions, P. F.; Hong, S.; See, L. X.; Hong, L. Z.; Wilm, A.; Li, C. H.; Hue, S.; Lim, S. G.; Nagarajan, N.; Burkholder, W. F.; Hibberd, M.
10.1101/129023 — evolutionary biology — Posted on 2017-04-20
384 Estimating Wildlife Vaccination Coverage Using Genetic Methods
Smith, F.; Robertson, A.; Smith, G. C.; Gill, P.; McDonald, R. A.; Wilson, G.; Delahay, R.
10.1101/129064 — ecology — Posted on 2017-04-20
386 Adaptive Therapy For Heterogeneous Cancer: Exploiting Space And Trade-Offs In Drug Scheduling
Gallaher, J. A.; Enriquez-Navas, P. M.; Luddy, K. A.; Gatenby, R. A.; Anderson, A. R. A.
10.1101/128959 — cancer biology — Posted on 2017-04-20
387 Dissecting telomere maintenance mechanisms in pediatric glioblastoma
Deeg, K. I.; Chung, I.; Poos, A. M.; Braun, D. M.; Korshunov, A.; Oswald, M.; Kepper, N.; Bender, S.; Castel, D.; Lichter, P.; Grill, J.; Pfister, S. M.; Konig, R.; Jones, D. T. W.; Rippe, K.
10.1101/129106 — cancer biology — Posted on 2017-04-20
391 Epistatic networks jointly influence phenotypes related to metabolic disease and gene expression in Diversity Outbred mice
Tyler, A. L.; Ji, B.; Gatti, D. M.; Munger, S. C.; Churchill, G. A.; Svenson, K. L.; Carter, G. W.
10.1101/098681 — genetics — Posted on 2017-04-20
393 Reversal of cardiac and skeletal manifestations of Duchenne muscular dystrophy by cardiosphere-derived cells and their exosomes in mdx dystrophic mice and in human Duchenne cardiomyocytes
Aminzadeh, M. A.; Rogers, R. G.; Gouin, K.; Fournier, M.; Tobin, R. E.; Guan, X.; Childers, M. K.; Andres, A. M.; Taylor, D. J.; Ibrahim, A.; Ding, X.-m.; Torrente, A.; Goldhaber, J. I.; Victor, R. A.; Gottlieb, R. A.; Lewis, M.; Marban, E.
10.1101/128900 — physiology — Posted on 2017-04-20
394 Fine-mapping of genetic loci driving spontaneous clearance of hepatitis C virus infection
Huang, H.; Duggal, P.; Thio, C.; Latanich, R.; Goedert, J.; Mangia, A.; Cox, A.; Kirk, G.; Mehta, S.; Blankson, J.; Aneja, J.; Alric, L.; Donfield, S.; Cramp, M.; Khakoo, S.; Tobler, L.; Busch, M.; Alexander, G.; Rosen, H.; Edlin, B.; Lauer, G.; Thomas, D.; Daly, M.; Chung, R.; Kim, A.
10.1101/128975 — immunology — Posted on 2017-04-20
398 MLL3/4 Prevents Stem Cell Hyperplasia And Controls Differentiation Programs In A Planarian Cancer Stem Cell Model
Mihaylova, Y.; Kao, D.; Hughes, S.; Lai, A.; Jaber-Hijazi, F.; Kosaka, N.; Abnave, P.; Aboobaker, A.
10.1101/126540 — developmental biology — Posted on 2017-04-19
403 Severe infections emerge from the microbiome by adaptive evolution
Young, B. C.; Wu, C.-H.; Gordon, N. C.; Cole, K.; Price, J. R.; Liu, E.; Sheppard, A.; Perera, S.; Charlesworth, J.; Golubchik, T.; Iqbal, Z.; Bowden, R.; Massey, R.; Paul, J.; Crook, D. W.; Peto, T. E.; Walker, A. S.; Llewelyn, M.; Wyllie, D. H.; Wilson, D.
10.1101/116681 — genomics — Posted on 2017-04-19
404 Flexible Parental Care: Uniparental Incubation In Biparentally Incubating Shorebirds
Bulla, M.; Pruter, H.; Vitnerova, H.; Tijsen, W.; Sladeček, M.; Alves, J. A.; Gilg, O.; Kempenaers, B.
10.1101/117028 — evolutionary biology — Posted on 2017-04-19
406 Does tobacco abstinence decrease reward sensitivity? A human laboratory test
Hughes, J. R.; Budney, A. J.; Muellers, S. R.; Lee, D. C.; Callas, P. W.; Sigmon, S. C.; Fingar, J. R.; Priest, J.
10.1101/128744 — neuroscience — Posted on 2017-04-19
408 Vitamin and amino acid auxotrophy in anaerobic consortia operating under methanogenic condition
Hubalek, V.; Buck, M.; Tan, B.; Foght, J.; Wendeberg, A.; Berry, D.; Bertilsson, S.; Eiler, A.
10.1101/128660 — microbiology — Posted on 2017-04-19
409 Pathogenesis of Zika Virus Infection via Rectal Route
Martinez, L. E.; Garcia, G.; Contreras, D.; Gong, D.; Sun, R.; Arumugaswami, V.
10.1101/128876 — microbiology — Posted on 2017-04-19
410 Like Sugar in Milk: Reconstructing the genetic history of the Parsi population
Chaubey, G.; Ayub, Q.; Rai, N.; Prakash, S.; Mushrif-Tripathy, V.; Mezzavilla, M.; Pathak, A. K.; Tamang, R.; Firasat, S.; Reidla, M.; Karmin, M.; Rani, D. S.; Reddy, A. G.; Parik, J.; Metspalu, E.; Rootsi, S.; Dalal, K.; Khaliq, S.; Mehdi, S. Q.; Singh, L.; Metspalu, M.; Kivisild, T.; Tyler-Smith, C.; Villems, R.; Thangaraj, K.
10.1101/128777 — evolutionary biology — Posted on 2017-04-19
413 Slingshot: Cell lineage and pseudotime inference for single-cell transcriptomics
Street, K.; Risso, D.; Fletcher, R. B.; Das, D.; Ngai, J.; Yosef, N.; Purdom, E.; Dudoit, S.
10.1101/128843 — bioinformatics — Posted on 2017-04-19
414 An Integrated Mechanistic Model of Pan-Cancer Driver Pathways Predicts Stochastic Proliferation and Death
Bouhaddou, M.; Barrette, A. M.; Koch, R. J.; DiStefano, M. S.; Riesel, E. A.; Stern, A. D.; Santos, L. C.; Tan, A.; Mertz, A.; Birtwistle, M. R.
10.1101/128801 — systems biology — Posted on 2017-04-19
415 Dissociating frontoparietal brain networks with neuroadaptive Bayesian optimization
Lorenz, R.; Violante, I. R.; Monti, R. P.; Montana, G.; Hampshire, A.; Leech, R.
10.1101/128678 — neuroscience — Posted on 2017-04-19
416 Improved DOP-PCR (iDOP-PCR): a robust and simple WGA method for efficient amplification of low copy number genomic DNA
Blagodatskikh, K.; Kramarov, V.; Barsova, E.; Garkovenko, A.; Shcherbo, D.; Shelenkov, A.; Ustinova, V.; Tokarenko, M.; Baker, S.; Kramarova, T.; Ignatov, K.
10.1101/128736 — molecular biology — Posted on 2017-04-19
417 Integrative Single-Cell Analysis By Transcriptional And Epigenetic States In Human Adult Brain
Lake, B.; Cheng, S.; Sos, B.; Fan, J.; Yung, Y.; Kaeser, G.; Duong, T.; Gao, D.; Chun, J.; Kharchenko, P.; Zhang, K.
10.1101/128520 — genomics — Posted on 2017-04-19
423 GeneSeqToFamily: the Ensembl Compara GeneTrees pipeline as a Galaxy workflow
Thanki, A. S.; Soranzo, N.; Haerty, W.; Muffato, M.; Davey, R. P.
10.1101/096529 — bioinformatics — Posted on 2017-04-19
427 The Effect Of Perinatal Brain Injury On Dopaminergic Function And Hippocampal Volume In Adult Life
Froudist-Walsh, S.; Bloomfield, M. A.; Veronese, M.; Kroll, J.; Karolis, V.; Jauhar, S.; Bonoldi, I.; McGuire, P. K.; Kapur, S.; Murray, R. M.; Nosarti, C.; Howes, O.
10.1101/128710 — neuroscience — Posted on 2017-04-19
428 Non-monotonic spatial structure of interneuronal correlations in prefrontal microcircuits
Safavi, S.; Dwarakanath, A.; Kapoor, V.; Werner, J.; Hatsopoulos, N. G.; Logothetis, N. K.; Panagiotaropoulos, T. I.
10.1101/128249 — neuroscience — Posted on 2017-04-19
434 Comparative Genomics Shows That Viral Integrations Are Abundant And Express piRNAs In The Arboviral Vectors Aedes aegypti And Aedes albopictus
Palatini, U.; Miesen, P.; Carballar-Lejarazu, R.; Ometto, L.; Rizzo, E.; Tu, Z.; van Rij, R.; Bonizzoni, M.
10.1101/128637 — genomics — Posted on 2017-04-19
439 Cell-intrinsic activation of Orai1 regulates human T cell motility
Dong, T. X.; Greenberg, M. L.; Leverrier, S.; Yu, Y.; Parker, I.; Dynes, J. L.; Cahalan, M. D.
10.1101/128595 — cell biology — Posted on 2017-04-19
440 Alternative splicing changes as drivers of cancer
Climente-Gonzalez, H.; Porta-Pardo, E.; Godzik, A.; Eyras, E.
10.1101/076653 — cancer biology — Posted on 2017-04-19
443 Highly sensitive detection of small variants in multi-sample ultra-deep tumor sequencing
Rabadan, R.; Marsilio, S.; Chiorazzi, N.; Pasqualucci, L.; Khiabanian, H.
10.1101/128587 — bioinformatics — Posted on 2017-04-19
449 Not by systems alone: identifying functional outliers in rare disease pedigrees
Ballouz, S.; Doerfel, M.; Crain, J.; Crow, M.; Faivre, L.; Keegan, C. E.; Kitsiou-Tzeli, S.; Tzetis, M.; Lyon, G. J.; Gillis, J.
10.1101/128439 — systems biology — Posted on 2017-04-18
452 Modeling Zika Virus Congenital Eye Disease: Differential Susceptibility of Fetal Retinal Progenitor Cells and iPSC-Derived Retinal Stem Cells to Zika Virus Infection
Contreras, D.; Jones, M.; Martinez, L. E.; Gangalapudi, V.; Tang, J.; Wu, Y.; Zhao, J. J.; Chen, Z.; Wang, S.; Arumugaswami, V.
10.1101/128405 — microbiology — Posted on 2017-04-18
453 Environmental Conditions And Agronomic Practices Induce Consistent Global Changes In DNA Methylation Patterns In Grapevine (Vitis vinifera cv Shiraz)
Xie, H.; Konate, M.; Sai, N.; Tesfamicael, K. G.; Cavagnaro, T.; Gilliham, M.; Breen, J.; Metcalfe, A.; DeBei, R.; Collins, C.; Rodriguez Lopez, C. M.
10.1101/127977 — plant biology — Posted on 2017-04-18
454 The G-box transcriptional regulatory code in Arabidopsis
Ezer, D.; Shepherd, S. J.; Brestovitsky, A.; Dickinson, P.; Cortijo, S.; Charoensawan, V.; Box, M. S.; Biswas, S.; Wigge, P.
10.1101/128371 — plant biology — Posted on 2017-04-18
456 Defects of myelination are common pathophysiology in syndromic and idiopathic autism spectrum disorders
Phan, B. N.; Page, S. C.; Campbell, M. N.; Bohlen, J. F.; Thaxton, C. L.; Simon, J. M.; Burke, E. E.; Shin, J. H.; Kennedy, A. J.; Sweatt, J. D.; Philpot, B. D.; Jaffe, A. E.; Maher, B. J.
10.1101/128124 — neuroscience — Posted on 2017-04-18
458 Red Blood Cell Distribution Width: genetic evidence for aging pathways in 116,666 volunteers
Pilling, L. C.; Atkins, J. L.; Duff, M. O.; Beaumont, R. N.; Jones, S. E.; Tyrrell, J.; Kuo, C.-L.; Ruth, K. S.; Tuke, M. A.; Yaghootkar, H.; Freathy, R. M.; Wood, A. R.; Murray, A.; Weedon, M. N.; Harries, L. W.; Kuchel, G. A.; Ferrucci, L.; Frayling, T. M.; Melzer, D.
10.1101/128330 — genomics — Posted on 2017-04-18
459 The genetic legacy of Zoroastrianism in Iran and India: Insights into population structure, gene flow and selection.
Lopez, S.; Thomas, M. G.; van Dorp, L.; Ansari-Pour, N.; Stewart, S.; Jones, A. L.; Jelinek, E.; Chikhi, L.; Parfitt, T.; Bradman, N.; Weale, M. E.; Hellenthal, G.
10.1101/128272 — genomics — Posted on 2017-04-18
460 Evaluation of pre-analytical factors affecting plasma DNA analysis
Markus, H.; Contente-Cuomo, T.; Liang, W. S.; Borad, M. J.; Sivakumar, S.; Gollins, S.; Tran, N. L.; Dhruv, H. D.; Berens, M. E.; Bryce, A.; Sekulic, A.; Ribas, A.; Trent, J. M.; LoRusso, P. M.; Murtaza, M.
10.1101/126839 — genomics — Posted on 2017-04-18
461 Highly efficient DNA-free gene disruption in the agricultural pest Ceratitis capitata by CRISPR-Cas9 RNPs
Meccariello, A.; Monti, S.; Romanelli, A.; Colonna, R.; Primo, P.; Inghilterra, M. G.; Del Corsano, G.; Ramaglia, A.; Iazzetti, G.; Chiarore, A.; Patti, F.; Heinze, S. D.; Salvemini, M.; Lindsay, H.; Chiavacci, E.; Burger, A.; Robinson, M.; Mosimann, C.; Bopp, D.; Saccone, G.
10.1101/127506 — genetics — Posted on 2017-04-18
469 Learning The High-Dimensional Immunogenomic Features That Predict Public And Private Antibody Repertoires
Greiff, V.; Weber, C. R.; Palme, J.; Bodenhofer, U.; Miho, E.; Menzel, U.; Reddy, S. T.
10.1101/127902 — systems biology — Posted on 2017-04-18
472 Nuclear Microenvironments Modulate Transcription From Low-Affinity Enhancers
Crocker, J.; Tsai, A.; Muthusamy, A. K.; Lavis, L. D.; Singer, R. H.; Stern, D. L.
10.1101/128280 — cell biology — Posted on 2017-04-18
473 Effects Of Δ9-THC And Cannabidiol Vapor Inhalation In Male And Female Rats
Javadi-Paydar, M.; Nguyen, J. D.; Grant, Y.; Vandewater, S. A.; Cole, M.; Taffe, M. A.
10.1101/128173 — pharmacology and toxicology — Posted on 2017-04-18
479 Learning The High-Dimensional Immunogenomic Features That Predict Public And Private Antibody Repertoires
Greiff, V.; Weber, C. R.; Palme, J.; Bodenhofer, U.; Miho, E.; Menzel, U.; Reddy, S. T.
10.1101/127902 — systems biology — Posted on 2017-04-18
481 Autonomous Combinatorial Color Barcoding For Multiplexing Single Molecule RNA Visualization
Cheng, Y.-S.; Zhuo, Y.; Hartmann, K.; Zou, P.; Bekki, G.; Alter, H.; Liu, H.-K.
10.1101/127373 — molecular biology — Posted on 2017-04-18
485 A Supernova at 50 PC: Effects on the Earth’s Atmosphere and Biota
Melott, A.; Thomas, B.; Kachelriess, M.; Semikoz, D.; Overholt, A.
10.1101/108936 — paleontology — Posted on 2017-04-17
487 Learning The High-Dimensional Immunogenomic Features That Predict Public And Private Antibody Repertoires
Greiff, V.; Weber, C. R.; Palme, J.; Bodenhofer, U.; Miho, E.; Menzel, U.; Reddy, S. T.
10.1101/127902 — systems biology — Posted on 2017-04-17
491 A Macrophage Response To Mycobacterium leprae Phenolic Glycolipid Initiates Nerve Damage In Leprosy
Madigan, C. A.; Cambier, C.; Kelly-Scumpia, K. M.; Scumpia, P. O.; Cheng, T.-Y.; Zailaa, J.; Bloom, B. R.; Moody, D. B.; Smale, S. T.; Sagasti, A.; Modlin, R. L.; Ramakrishnan, L.
10.1101/127944 — microbiology — Posted on 2017-04-17
500 TGH: Trans-Generational Hormesis And The Inheritance Of Aging Resistance
Ng, L. F.; Suresh, J.; Chaithanya, K.; Xiao, L.; Tan, T. Z.; Gruber, J.; Tolwinski, N.
10.1101/127951 — biochemistry — Posted on 2017-04-17
501 The causal effect of educational attainment on Alzheimer’s disease: A two-sample Mendelian randomization study
Anderson, E.; Wade, K. H.; Hemani, G.; Bowden, J.; Korologou-Linden, R.; Davey Smith, G.; Ben-Shlomo, Y.; Howe, L. D.; Stergiakouli, E.
10.1101/127993 — epidemiology — Posted on 2017-04-17
504 Autonomous Combinatorial Color Barcoding For Multiplexing Single Molecule RNA Visualization
Chen, Y.-S.; Zhuo, Y.; Hartmann, K.; Zou, P.; Bekki, G.; Alter, H.; Liu, H.-K.
10.1101/127373 — molecular biology — Posted on 2017-04-17
506 Why are frameshift homologs widespread within and across species?
Wang, X.; Dong, Q.; Chen, G.; Zhang, J.; Liu, Y.; Zhao, J.; Peng, H.; Wang, Y.; Cai, Y.; Wang, X.; Yang, C.
10.1101/067736 — genetics — Posted on 2017-04-17
507 Autonomous Combinatorial Color Barcoding For Multiplexing Single Molecule RNA Visualization
Chen, Y.-S.; Zhuo, Y.; Hartmann, K.; Zou, P.; Bekki, G.; Alter, H.; Liu, H.-K.
10.1101/127373 — molecular biology — Posted on 2017-04-17
511 Estimating DSM accuracy for Attention Deficit Hyperactivity Disorder Based on Neurophysiological, Psychological, and Behavioral Correlates
Abramov, D. M.; Gomes-Junior, S.-C.; Mourao-Junior, C. A.; Pontes, A. T.; Rodrigues, C. Q. C.; Pontes, M. C.; Vieira, J.; Galhanone, P. R.; deAzevedo, L. C.; Lazarev, V. V.
10.1101/126433 — neuroscience — Posted on 2017-04-16
517 SARNAclust: Semi-Automatic Detection Of RNA Protein Binding Motifs From Immunoprecipitation Data
Dotu, I.; Adamson, S.; Coleman, B.; Fournier, C.; Ricart-Altimiras, E.; Eyras, E.; Chuang, J. H.
10.1101/127878 — bioinformatics — Posted on 2017-04-16
519 Changes In LXRα Phosphorylation Promote A Novel Diet-Induced Transcriptome That Alters The Transition From Fatty Liver To Steatohepatitis
Becares, N.; Gage, M. C.; Martin-Gutierrez, L.; Pourcet, B.; Pello, O. M.; Luong, T. V.; Goni, S.; Liang, N.; Pichardo, C.; Shrestha, E.; Roberg-Larsen, H.; Diaz, V.; Steffensen, K.; Garabedian, M. J.; Rombouts, K.; Treuter, E.; Pineda-Torra, I.
10.1101/127779 — pathology — Posted on 2017-04-15
521 Challenges And Emerging Directions In Single-Cell Analysis
Yuan, G.-C.; Cai, L.; Elowitz, M.; Enver, T.; Fan, G.; Guo, G.; Irizarry, R.; Kharchenko, P.; Kim, J.; Orkin, S.; Quackenbush, J.; Saadatpour, A.; Schroeder, T.; Shivdasani, R.; Tirosh, I.
10.1101/127761 — genomics — Posted on 2017-04-15
522 GeoDiver: Differential Gene Expression Analysis & Gene-Set Analysis For GEO Datasets
Moghul, I.; Hewapathirana, S.; Nawaz, N.; Rashid, A.; Priebe, M.; Smeraldi, F.; Bessant, C.
10.1101/127753 — bioinformatics — Posted on 2017-04-15
523 GlnK facilitates the dynamic regulation of bacterial nitrogen assimilation
Gosztolai, A.; Schumacher, J.; Behrends, V.; Bundy, J. G.; Heydenreich, F.; Bennett, M. H.; Buck, M.; Barahona, M.
10.1101/127662 — systems biology — Posted on 2017-04-15
524 Genomics-enabled analysis of the emergent disease cotton bacterial blight
Phillips, A. Z.; Berry, J. C.; Wilson, M. C.; Vijayaraghavan, A.; Burke, J.; Bunn, J. I.; Allen, T. W.; Wheeler, T.; Bart, R.
10.1101/127670 — plant biology — Posted on 2017-04-15
527 Surgically disconnected temporal pole exhibits resting functional connectivity with remote brain regions
Warren, D. E.; Sutterer, M. J.; Bruss, J.; Abel, T. J.; Jones, A.; Kawasaki, H.; Voss, M.; Cassell, M.; Howard, M. A.; Tranel, D.
10.1101/127571 — neuroscience — Posted on 2017-04-15
528 Preexisting antibodies can protect against congenital cytomegalovirus infection in monkeys
Nelson, C. S.; Cruz, D. V.; Tran, D.; Bialas, K. M.; Stamper, L.; Wu, H.; Gilbert, M.; Blair, R.; Alvarez, X.; Itell, H.; Chen, M.; Deshpande, A.; Chiuppesi, F.; Wussow, F.; Diamond, D. J.; Vandergrift, N.; Walter, M.; Barry, P.; Cohen-Wolkowiez, M.; Koelle, K.; Kaur, A.; Permar, S. R.
10.1101/127647 — immunology — Posted on 2017-04-15
530 StateHub-StatePaintR: rules-based chromatin state annotations.
Coetzee, S. G.; Ramjan, Z.; Ding, H. Q.; Berman, B. P.; Hazelett, D. J.
10.1101/127720 — bioinformatics — Posted on 2017-04-15
531 A general method to fine-tune fluorophores for live-cell and in vivo imaging
Grimm, J. B.; Muthusamy, A. K.; Liang, Y.; Brown, T. A.; Lemon, W. C.; Patel, R.; Lu, R.; Macklin, J. J.; Keller, P. J.; Ji, N.; Lavis, L. D.
10.1101/127613 — cell biology — Posted on 2017-04-14
534 Detecting the impact of temperature on transmission of Zika, dengue and chikungunya using mechanistic models
Mordecai, E. A.; Cohen, J.; Evans, M. V.; Gudapati, P.; Johnson, L. R.; Lippi, C. A.; Miazgowicz, K.; Murdock, C. C.; Rohr, J. R.; Ryan, S. J.; Savage, V.; Shocket, M.; Stewart Ibarra, A.; Thomas, M. B.; Weikel, D. P.
10.1101/063735 — ecology — Posted on 2017-04-14
535 Optogenetic Control of RhoA Reveals Zyxin-mediated Elasticity of Stress Fibers
Oakes, P. W.; Wagner, E.; Brand, C. A.; Probst, D.; Linke, M.; Schwarz, U. S.; Glotzer, M.; Gardel, M. L.
10.1101/109595 — biophysics — Posted on 2017-04-14
536 Evolutionary Dynamics Of Genome-Wide Position Effects In Mammals
Bagadia, M.; Chandradoss, K. R.; Jain, Y.; Sandhu, K. S.
10.1101/127563 — genomics — Posted on 2017-04-14
540 Topological Demarcation By HMGB2 Is Disrupted Early Upon Senescence Entry Across Cell Types And Induces CTCF Clustering
Zirkel, A.; Nikolic, M.; Sofiadis, K.; Mallm, J.-P.; Brant, L.; Becker, C.; Altmueller, J.; Franzen, J.; Koker, M.; Gusmao, E. G.; Costa, I. G.; Ullrich, R. T.; Wagner, W.; Nuernberg, P.; Rippe, K.; Papantonis, A.
10.1101/127522 — genomics — Posted on 2017-04-14
542 Novel Locus Influencing Retinal Venular Tortuosity Is Also Associated With Risk Of Coronary Artery Disease
Veluchamy, A.; Ballerini, L.; Vitart, V.; Hayward, C.; Schraut, K.; Joshi, P.; Campbell, H.; Kirin, M.; Relan, D.; Harris, S.; Brown, E.; Vaidya, S.; Dhillon, B.; Zhou, K.; Pearson, E.; Polasek, O.; Deary, I.; MacGillivray, T.; Wilson, J.; Trucco, E.; Palmer, C.; Doney, A.
10.1101/121012 — genomics — Posted on 2017-04-14
543 MaxTiC: Fast Ranking Of A Phylogenetic Tree By Maximum Time Consistency With Lateral Gene Transfers
Chauve, C.; Rafiey, A.; Davin, A. A.; Scornavacca, C.; Veber, P.; Boussau, B.; Szollosi, G.; Daubin, V.; Tannier, E.
10.1101/127548 — evolutionary biology — Posted on 2017-04-14
546 Sex Differences In The Adult Human Brain: Evidence From 5,216 UK Biobank Participants
Ritchie, S. J.; Cox, S. R.; Shen, X.; Lombardo, M. V.; Reus, L. M.; Alloza, C.; Harris, M. A.; Alderson, H.; Hunter, S.; Neilson, E.; Liewald, D. C.; Auyeung, B.; Whalley, H. C.; Lawrie, S. M.; Gale, C. R.; Bastin, M. E.; McIntosh, A. M.; Deary, I. J.
10.1101/123729 — neuroscience — Posted on 2017-04-14
547 Flexible Parental Care: Uniparental Incubation In Biparentally Incubating Shorebirds
Bulla, M.; Pruter, H.; Vitnerova, H.; Tijsen, W.; Sladeček, M.; Alves, J. A.; Gilg, O.; Kempenaers, B.
10.1101/117028 — evolutionary biology — Posted on 2017-04-14
549 Flexible Parental Care: Uniparental Incubation In Biparentally Incubating Shorebirds
Bulla, M.; Pruter, H.; Vitnerova, H.; Tijsen, W.; Sladeček, M.; Alves, J. A.; Gilg, O.; Kempenaers, B.
10.1101/117028 — evolutionary biology — Posted on 2017-04-14
552 PB-kPRED: Knowledge-Based Prediction Of Protein Backbone Conformation Using A Structural Alphabet
Vetrivel, I.; Mahajan, S.; Tyagi, M.; Hoffmann, L.; Sanejouand, Y.-H.; Srinivasan, N.; de Brevern, A. G.; Cadet, F.; Offmann, B.
10.1101/127423 — bioinformatics — Posted on 2017-04-14
554 Direct Conversion Of Human Fibroblasts Into Osteoblasts And Osteocytes With Small Molecules And A Single Factor, Runx2
Li, Y.; Wang, Y.; Yu, J.; Ma, Z.; Bai, Q.; Wu, X.; Bao, P.; Li, L.; Ma, D.; Liu, J.; Liu, C.; Chen, F.; Hu, M.
10.1101/127480 — cell biology — Posted on 2017-04-14
557 Volumetric grey matter alterations in adolescents and adults born very preterm suggest accelerated brain maturation
Karolis, V. R.; Froudist-Walsh, S.; Kroll, J.; Brittain, P. J.; Tseng, C.-E. J.; Nam, K.-W.; Reinders, A. A. T. S.; Murray, R. M.; Williams, S. C. R.; Thompson, P. M.; Nosarti, C.
10.1101/127365 — neuroscience — Posted on 2017-04-13
560 Nanopore detection of bacterial DNA base modifications
McIntyre, A. B. R.; Alexander, N.; Burton, A. S.; Castro-Wallace, S.; Chiu, C. Y.; John, K. K.; Stahl, S. E.; Li, S.; Mason, C. E.
10.1101/127100 — genomics — Posted on 2017-04-13
562 Genome-Wide Mechanisms of Lifespan Extension by Dietary Restriction in Yeast
Campos, S. E.; Garay, E.; Avelar-Rivas, J. A.; Juarez-Reyes, A.; DeLuna, A.
10.1101/126797 — genetics — Posted on 2017-04-13
565 Cell fixation and preservation for droplet-based single-cell transcriptomics
Alles, J.; Karaiskos, N.; Praktiknjo, S.; Grosswendt, S.; Wahle, P.; Ruffault, P.-L.; Ayoub, S.; Schreyer, L.; Boltengagen, A.; Birchmeier, C.; Zinzen, R.; Kocks, C.; Rajewsky, N.
10.1101/099473 — genomics — Posted on 2017-04-13
569 Top-down beta enhances bottom-up gamma.
Richter, C. G.; Thompson, W. H.; Bosman, C. A.; Fries, P.
10.1101/054288 — neuroscience — Posted on 2017-04-13
571 Limited contribution of rare, noncoding variation to autism spectrum disorder from sequencing of 2,076 genomes in quartet families
Werling, D. M.; Brand, H.; An, J.-Y.; Stone, M. R.; Glessner, J. T.; Zhu, L.; Collins, R. L.; Dong, S.; Layer, R. M.; Markenscoff-Papadimitriou, E.-C.; Farrell, A.; Schwartz, G. B.; Currall, B. B.; Dea, J.; Duhn, C.; Erdman, C.; Gilson, M.; Handsaker, R. E.; Kashin, S.; Klei, L.; Mandell, J. D.; Nowakowski, T. J.; Liu, Y.; Pochareddy, S.; Smith, L.; Walker, M. F.; Wang, H. Z.; Waterman, M. J.; He, X.; Kriegstein, A. R.; Rubenstein, J. L.; Sestan, N.; McCarroll, S. A.; Neale, B. M.; Coon, H.; Willsey, A. J.; Buxbaum, J. D.; Daly, M. J.; State, M. W.; Quinlan, A.; Marth, G. T.; Roeder, K.; Devli
10.1101/127043 — genomics — Posted on 2017-04-13
574 Hierarchical cortical transcriptome disorganization in autism
Lombardo, M. V.; Courchesne, E.; Lewis, N. E.; Pramparo, T.
10.1101/042937 — genomics — Posted on 2017-04-13
576 Genetical genomics reveals Ras/MAPK modifier loci
Sterken, M. G.; Van Bemmelen van der Plaat, L.; Riksen, J. A. G.; Rodriguez, M.; Schmid, T.; Hajnal, A.; Kammenga, J. E.; Snoek, B. L.
10.1101/127274 — genetics — Posted on 2017-04-13
578 Maternal BMI at the start of pregnancy and offspring epigenome-wide DNA methylation: Findings from the Pregnancy and Childhood Epigenetics (PACE) consortium.
Sharp, G. C.; Salas, L. A.; Monnereau, C.; Allard, C.; Yousefi, P.; Everson, T.; The PACE Consortium, ; London, S. J.; Felix, J. F.; Relton, C. L.
10.1101/125492 — epidemiology — Posted on 2017-04-13
579 Competition between histone and transcription factor binding regulates the onset of transcription in zebrafish embryos
Joseph, S.; Palfy, M.; Hilbert, L.; Kumar, M.; Karschau, J.; Zaburdaev, V.; Shevchenko, A.; Vastenhouw, N.
10.1101/125716 — developmental biology — Posted on 2017-04-13
580 Mapping Human Hematopoietic Hierarchy At Single Cell Resolution By Microwell-seq
Lai, S.; Xu, Y.; Huang, W.; Jiang, M.; Chen, H.; Ye, F.; Wang, R.; Qiu, Y.; Jiang, X.; Huang, D.; Mao, J.; Li, Y.; Lu, Y.; Xie, J.; Fang, Q.; Li, T.; Huang, H.; Han, X.; Guo, G.
10.1101/127217 — cell biology — Posted on 2017-04-13
581 Bayesian Inference Of Cancer Driver Genes Using Signatures Of Positive Selection
Zapata, L.; Susak, H.; Drechsel, O.; Friedlander, M.; Estivill, X.; Ossowski, S.
10.1101/059360 — cancer biology — Posted on 2017-04-13
582 The Unique Protein-To-Protein Carotenoid Transfer Mechanism
Maksimov, E. G.; Sluchanko, N. N.; Slonimskiy, Y. B.; Mironov, K. S.; Klementiev, K. E.; Moldenhauer, M.; Friedrich, T.; Los, D. A.; Paschenko, V. Z.; Rubin, A. B.
10.1101/127183 — biophysics — Posted on 2017-04-13
585 Binding Of A Newly Identified Essential Light Chain To Expressed Plasmodium falciparum Class XIV Myosin Enhances Actin Motility
Bookwalter, C. S.; Tay, C. L.; McCrorie, R.; Previs, M. J.; Krementsova, E. B.; Fagnant, P. M.; Baum, J.; Trybus, K. M.
10.1101/127118 — biochemistry — Posted on 2017-04-13
587 Metabolic profiling of adiponectin levels in adults: Mendelian randomization analysis
Borges, M. C.; Barros, A. J.; Ferreira, D. L. S.; Casas, J. P.; Horta, B. L.; Kivimaki, M.; Kumari, M.; Menon, U.; Gaunt, T. R.; Ben-Shlomo, Y.; Freitas, D. F.; Oliveira, I. O.; Gentry-Maharaj, A.; Fourkala, E.; Lawlor, D. A.; Hingorani, A. D.
10.1101/126789 — epidemiology — Posted on 2017-04-13
590 FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
Pajuste, F.-D.; Kaplinski, L.; Mols, M.; Puurand, T.; Lepamets, M.; Remm, M.
10.1101/060822 — genomics — Posted on 2017-04-13
591 Evaluating the clinical validity of gene-disease associations: an evidence-based framework developed by the Clinical Genome Resource
Strande, N. T.; Riggs, E. R.; Buchanan, A. H.; Ceyhan-Birsoy, O.; DiStefano, M. T.; Dwight, S. S.; Goldstein, J. L.; Ghosh, R.; Seifert, B. A.; Sneddon, T. P.; Wright, M. W.; Milko, L. V.; Cherry, J. M.; Giovanni, M. A.; Murray, M. F.; O'Daniel, J. M.; Ramos, E. M.; Santani, A. B.; Scott, A. F.; Plon, S. E.; Rehm, H. L.; Martin, C. L.; Berg, J. S.
10.1101/111039 — genetics — Posted on 2017-04-13
592 Human Missense Variation is Constrained by Domain Structure and Highlights Functional and Pathogenic Residues
MacGowan, S. A.; Madeira, F.; Britto Borges, T.; Schmittner, M. S.; Cole, C.; Barton, G. J.
10.1101/127050 — genetics — Posted on 2017-04-13
594 Maternal BMI at the start of pregnancy and offspring epigenome-wide DNA methylation: Findings from the Pregnancy and Childhood Epigenetics (PACE) consortium.
Sharp, G. C.; Salas, L. A.; Monnereau, C.; Allard, C.; Yousefi, P.; Everson, T.; The Pregnancy and Childhood Epigenetics (PACE) Con, ; London, S. J.; Felix, J. F.; Relton, C. L.
10.1101/125492 — epidemiology — Posted on 2017-04-13
596 powsimR: Power analysis for bulk and single cell RNA-seq experiments
Vieth, B.; Ziegenhain, C.; Parekh, S.; Enard, W.; Hellmann, I.
10.1101/117150 — bioinformatics — Posted on 2017-04-13
598 Nanopore Long-Read RNAseq Reveals Widespread Transcriptional Variation Among the Surface Receptors of Individual B cells
Byrne, A.; Beaudin, A. E.; Olsen, H. E.; Jain, M.; Cole, C.; Palmer, T.; DuBois, R. M.; Forsberg, E. C.; Akeson, M.; Vollmers, C.
10.1101/126847 — genomics — Posted on 2017-04-13
599 Local processing of visual information in neurites of VGluT3-expressing amacrine cells
Hsiang, J.-C.; Johnson, K.; Madisen, L.; Zeng, H.; Kerschensteiner, D.
10.1101/127159 — neuroscience — Posted on 2017-04-13
601 Acute transient cognitive dysfunction and acute brain injury induced by systemic inflammation occur by dissociable IL-1-dependent mechanisms
Skelly, D.; Griffin, E. W.; Murray, C.; Harney, S.; O'Boyle, C.; Hennessy, E.; Rawlins, N.; Bannerman, D.; Cunningham, C.
10.1101/127084 — neuroscience — Posted on 2017-04-12
605 Can Zika Account For The Missing Babies?
Coelho, F. C.; Armstrong, M.; Saraceni, V.; Lemos, C.
10.1101/126557 — epidemiology — Posted on 2017-04-12
607 Derivation and Validation of a Record Linkage Algorithm between EMS and the Emergency Department
Redfield, C.; Tlimat, A.; Halpern, Y.; Schoenfeld, D.; Ullman, E.; Sontag, D. A.; Nathanson, L. A.; Horng, S.
10.1101/124313 — bioinformatics — Posted on 2017-04-12
608 Evaluation of the Angus ICD9-CM Sepsis Abstraction Criteria
Horng, S.; Nathanson, L. A.; Sontag, D. A.; Shapiro, N. I.
10.1101/124289 — bioinformatics — Posted on 2017-04-12
610 Modulation of Genome Editing Outcomes by Cell Cycle Control of Cas9 Expression
Huang, Y.; McCann, C.; Samsonov, A.; Malkov, D.; Davis, G. D.; Ji, Q.
10.1101/127068 — molecular biology — Posted on 2017-04-12
611 Repliscan: a tool for classifying replication timing regions
Zynda, G. J.; Song, J.; Concia, L.; Wear, E. E.; Hanley-Bowdoin, L.; Thompson, W. F.; Vaughn, M. W.
10.1101/094177 — bioinformatics — Posted on 2017-04-12
616 Adolescent Tuning Of Association Cortex In Human Structural Brain Networks
Vasa, F.; Seidlitz, J.; Romero-Garcia, R.; Whitaker, K. J.; Rosenthal, G.; Vertes, P. E.; Shinn, M.; Alexander-Bloch, A.; Fonagy, P.; Dolan, R.; Jones, P.; Goodyer, I.; The NSPN Consortium, ; Sporns, O.; Bullmore, E. T.
10.1101/126920 — neuroscience — Posted on 2017-04-12
619 Bacterial community composition and dynamics spanning five years in freshwater bog lakes
Linz, A.; Crary, B. C.; Shade, A.; Owens, S.; Gilbert, J.; Knight, R.; McMahon, K.
10.1101/127035 — microbiology — Posted on 2017-04-12
621 Interactome INSIDER: A Multi-Scale Structural Interactome Browser For Genomic Studies
Meyer, M.; Beltran, J. F.; Liang, S.; Fragoza, R.; Rumack, A.; Liang, J.; Wei, X.; Yu, H.
10.1101/126862 — genomics — Posted on 2017-04-12
622 Human Missense Variation is Constrained by Domain Structure and Highlights Functional and Pathogenic Residues
MacGowan, S. A.; Madeira, F.; Britto Borges, T.; Schmittner, M. S.; Cole, C.; Barton, G. J.
10.1101/127050 — genetics — Posted on 2017-04-12
623 Causal Analyses, Statistical Efficiency And Phenotypic Precision Through Recall-By-Genotype Study Design
Corbin, L. J.; Tan, V. Y.; Hughes, D. A.; Wade, K. H.; Paul, D. S.; Tansey, K. E.; Butcher, F.; Dudbridge, F.; Howson, J. M.; Jallow, M. W.; John, C.; Kingston, N.; Lindgren, C. M.; O'Donavan, M.; O'Rahilly, S.; Owen, M. J.; Palmer, C. N. A.; Pearson, E. R.; Scott, R. A.; van Heel, D. A.; Whittaker, J.; Frayling, T.; Tobin, M. D.; Wain, L. V.; Evans, D. M.; Karpe, F.; McCarthy, M. I.; Danesh, J.; Franks, P. W.; Timpson, N. J.
10.1101/124586 — genetics — Posted on 2017-04-12
627 Slow conformational exchange and overall rocking motion in ubiquitin protein crystals
Kurauskas, V.; Izmailov, S. A.; Rogacheva, O. N.; Hessel, A.; Ayala, I.; Woodhouse, J.; Shilova, A.; Xue, Y.; Yuwen, T.; Coquelle, N.; Colletier, J.-P.; Skrynnikov, N. R.; Schanda, P.
10.1101/126813 — biophysics — Posted on 2017-04-12
632 Estimation of immune cell content in tumour tissue using single-cell RNA-seq data
Schelker, M.; Feau, S.; Du, J.; Ranu, N.; Klipp, E.; MacBeath, G.; Schoeberl, B.; Raue, A.
10.1101/127001 — bioinformatics — Posted on 2017-04-12
633 Local Nucleation Of Microtubule Bundles Through Tubulin Concentration Into A Condensed Tau Phase
Hernandez-Vega, A.; Braun, M.; Scharrel, L.; Jahnel, M.; Wegmann, S.; Hyman, B. T.; Alberti, S.; Diez, S.; Hyman, A. A.
10.1101/119800 — cell biology — Posted on 2017-04-12
636 The Genome Of The Contractile Demosponge Tethya wilhelma And The Evolution Of Metazoan Neural Signalling Pathways
Francis, W. R.; Eitel, M.; Vargas R., S.; Adamski, M.; Haddock, S. H.; Krebs, S.; Blum, H.; Erpenbeck, D.; Worheide, G.
10.1101/120998 — genomics — Posted on 2017-04-12
638 Cell type boundaries organize plant development
Caggiano, M. P.; Yu, X.; Bhatia, N.; Larsson, A.; Ram, H.; Ohno, C. K.; Sappl, P.; Meyerowitz, E. M.; Jonsson, H.; Heisler, M. G.
10.1101/126466 — developmental biology — Posted on 2017-04-12
641 Identification and Optimization of 4-Anilinoquinolines as Inhibitors of Cyclin G Associated Kinase
Asquith, C. R. M.; Laitinen, T.; Bennett, J. M.; Godoi, P. H.; Tizzard, G. J.; Elkins, J. M.; Willson, T. M.; Zuercher, W. J.
10.1101/117630 — pharmacology and toxicology — Posted on 2017-04-11
642 Odor concentration change detectors in the Olfactory Bulb
Parabucki, A.; Bizer, A.; Morris, G.; Smear, M. C.; Shusterman, R.
10.1101/114520 — neuroscience — Posted on 2017-04-11
647 Quiescence unveils a novel mutational force in fission yeast
Gangloff, S.; Achaz, G.; Villain, A.; Miled, S.; Denis, C.; Arcangioli, B.
10.1101/126755 — genomics — Posted on 2017-04-11
648 Histopathological image QTL discovery of thyroid autoimmune disease variants
Barry, J. D.; Fagny, M.; Paulson, J. N.; Aerts, H.; Platig, J.; Quackenbush, J.
10.1101/126730 — genomics — Posted on 2017-04-11
651 Akt regulation of glycolysis mediates bioenergetic stability in epithelial cells
Albeck, J. G.; Hung, Y. P.; Teragawa, C.; Pargett, M.; Gillies, T. E.; Minguet, M.; Distor, K.; Rocha-Gregg, B. L.; Kosaisawe, N.; Brugge, J. S.; Yellen, G.
10.1101/126771 — biochemistry — Posted on 2017-04-11
654 Origin and cross-century dynamics of an avian hybrid zone
Morales-Rozo, A.; Tenorio, E. A.; Carling, M. D.; Cadena, C. D.
10.1101/012856 — evolutionary biology — Posted on 2017-04-11
658 When Group Means Fail: Can One Size Fit All?
Grandy, T. H.; Lindenberger, U.; Werkle-Bergner, M.
10.1101/126490 — neuroscience — Posted on 2017-04-11
659 The central amygdala controls learning in the lateral amygdala
Yu, K.; Ahrens, S.; Zhang, X.; Schiff, H.; Ramakrishnan, C.; Fenno, L.; Deisseroth, K.; Zhou, P.; Paninski, L.; Li, B.
10.1101/126649 — neuroscience — Posted on 2017-04-11
663 Cell type boundaries organize plant development
Heisler, M. G.; Caggiano, M. P.; Yu, X.; Bhatia, N.; Larsson, A.; Ram, H.; Ohno, C. K.; Sappl, P.; Meyerowitz, E. M.; Jonsson, H.
10.1101/126466 — developmental biology — Posted on 2017-04-11
668 Estimating DSM accuracy for Attention Deficit Hyperactivity Disorder Based on Neurophysiological, Psychological, and Behavioral Correlates
Abramov, D. M.; Gomes-Junior, S.-C.; Mourao-Junior, C. A.; Pontes, A. T.; Rodrigues, C. Q. C.; Pontes, M. C.; Vieira, J.; Galhanone, P. R.; deAzevedo, L. C.; Lazarev, V. V.
10.1101/126433 — neuroscience — Posted on 2017-04-11
672 Recording action potential propagation in single axons using multi-electrode arrays
Tovar, K. R.; Bridges, D. C.; Wu, B.; Randall, C.; Audouard, M.; Jang, J.; Hansma, P. K.; Kosik, K. S.
10.1101/126425 — neuroscience — Posted on 2017-04-11
675 Compressed timeline of recent experience in monkey lPFC
Tiganj, Z.; Cromer, J. A.; Roy, J. E.; Miller, E. K.; Howard, M. W.
10.1101/126219 — neuroscience — Posted on 2017-04-11
677 Linking FANTOM5 CAGE Peaks To Annotations With CAGEscan
Bertin, N.; Mendez, M.; Hasegawa, A.; Lizio, M.; Abugessaisa, I.; Severin, J.; Sakai-Ohno, M.; Lassmann, T.; Kasukawa, T.; Kawaji, H.; Hayashizaki, Y.; Forrest, A.; Carninci, P.; Plessy, C.
10.1101/126474 — genomics — Posted on 2017-04-11
680 BasePlayer: Versatile Analysis Software For Large-Scale Genomic Variant Discovery
Katainen, R.; Donner, I.; Cajuso, T.; Kaasinen, E.; Palin, K.; Makinen, V.; Aaltonen, L. A.; Pitkanen, E.
10.1101/126482 — bioinformatics — Posted on 2017-04-11
681 High Accuracy Base Calls in Nanopore Sequencing
Faucon, P. C.; Trevino, R.; Balachandran, P.; Standage-Beier, K.; Wang, X.
10.1101/126680 — bioinformatics — Posted on 2017-04-11
686 ETV4 And AP1 Transcription Factors Form Multivalent Interactions With Three Sites On The MED25 Activator-Interacting Domain
Currie, S. L.; Doane, J. J.; Evans, K. S.; Bhachech, N.; Madison, B. J.; Lau, D. K. W.; McIntosh, L. P.; Skalicky, J. J.; Clark, K. A.; Graves, B. J.
10.1101/126458 — biochemistry — Posted on 2017-04-11
687 Intermolecular Disulfide-Bond Formation In Human FICD Modulates The Activity Of The Hyperactive E234G Mutant
Magnoni, R.; Virolainen, M. S.; Hackney, C. M.; Soltoft, C. L.; Cordeiro, A. P.; Liu, Y.; Scavenius, C.; Enghild, J. J.; Christensen, B.; Paton, J.; Paton, A. W.; Sorensen, E. S.; Ellgaard, L.
10.1101/126516 — molecular biology — Posted on 2017-04-11
688 Evolution And Multiple Roles Of The Pancrustacea Specific Transcription Factor zelda In Insects
Ribeiro, L.; Tobias-Santos, V.; Santos, D.; Antunes, F.; Feltran, G.; de Souza Menezes, J.; Aravind, L.; Venancio, T. M.; Fonseca, R. N. d.
10.1101/126417 — genetics — Posted on 2017-04-11
689 MLL3/4 Prevents Stem Cell Hyperplasia And Controls Differentiation Programs In A Planarian Cancer Stem Cell Model
Mihaylova, Y.; Kao, D.; Hughes, S.; Lai, A.; Jaber-Hijazi, F.; Kosaka, N.; Abnave, P.; Aboobaker, A.
10.1101/126540 — developmental biology — Posted on 2017-04-11
692 Deep experimental profiling of microRNA diversity, deployment, and evolution across the Drosophila genus
Flynt, A. S.; Panzarino, A.; Mondal, M. M. H.; Siepel, A.; Mohammed, J.; Lai, E.
10.1101/125997 — genomics — Posted on 2017-04-11
693 Survival Beyond the Perinatal Period Expands the Phenotypes Caused by Mutations in GLE1
Said, E.; Chong, J.; Hempel, M.; Denecke, J.; Soler, P.; Strom, T.; Nickerson, D. A.; Kubisch, C.; Bamshad, M.; University of Washington Center for Mendelian Geno, ; Lessel, D.
10.1101/124172 — genetics — Posted on 2017-04-11
695 Motif Disruption Domains Lead To Cancer Gene Expression Rewiring
Lamaze, F. C.; Chateigner, A.; Edgington, H. A.; Fave, M.-J.; Ang Houle, A.; PCAWG group3, ; Awadalla, P.
10.1101/126359 — cancer biology — Posted on 2017-04-11
696 JEPEGMIX2: improved gene-level joint analysis of eQTLs in cosmopolitan cohorts.
Chatzinakos, C.; Lee, D.; Webb, B. T.; Vladimirov, V.; Kendler, K.; Bacanu, S.
10.1101/126300 — bioinformatics — Posted on 2017-04-11
700 Diagnostic Prediction Tools For Bacteraemia Caused By 3rd Generation Cephalosporin-Resistant Enterobacteriaceae In Suspected Bacterial Infections: A Nested Case-Control Study
Rottier, W. C.; van Werkhoven, C. H.; Bamberg, Y. R. P.; Dorigo-Zetsma, J. W.; van de Garde, E. M.; van Hees, B. C.; Kluytmans, J. A. J. W.; Kuck, E. M.; van der Linden, P. D.; Prins, J. M.; Thijsen, S. F. T.; Verbon, A.; Vlaminckx, B. J. M.; Ammerlaan, H. S. M.; Bonten, M. J. M.
10.1101/120550 — epidemiology — Posted on 2017-04-10
706 The effect of a lifestyle intervention in obese pregnant women on change in gestational metabolic profiles: findings form the UK Pregnancies Better Eating and Activity Trial (UPBEAT) RCT.
Mills, H.; Patel, N.; White, S.; Pasupathy, D.; Briley, A. L.; dos Santos Ferreira, D.; Seed, P. T.; Nelson, S. M.; Sattar, N.; Tilling, K.; Poston, L.; Lawlor, D. A.
10.1101/125740 — clinical trials — Posted on 2017-04-10
713 A likelihood ratio test for changes in homeolog expression bias
Smith, R. D.; Kinser, T. J.; Smith, G. D.; Puzey, J. R.
10.1101/119438 — genomics — Posted on 2017-04-10
720 De novo Identification of DNA Modifications Enabled by Genome-Guided Nanopore Signal Processing
Stoiber, M. H.; Quick, J.; Egan, R.; Lee, J. E.; Celniker, S. E.; Neely, R.; Loman, N.; Pennacchio, L.; Brown, J. B.
10.1101/094672 — bioinformatics — Posted on 2017-04-10
722 Unsupervised extraction of stable expression signatures from public compendia with eADAGE
Tan, J.; Doing, G.; Lewis, K. A.; Price, C. E.; Chen, K. M.; Cady, K. C.; Perchuk, B.; Laub, M. T.; Hogan, D. A.; Greene, C. S.
10.1101/078659 — systems biology — Posted on 2017-04-10
724 Multichannel Sleep Spindle Detection Using Sparse Low-Rank Optimization
Parekh, A.; Selesnick, I.; Osorio, R. S.; Varga, A. W.; Rapoport, D. M.; Ayappa, I.
10.1101/104414 — neuroscience — Posted on 2017-04-10
725 Metagenomic Sequencing Detects Respiratory Pathogens in Hematopoietic Cellular Transplant Patients
Langelier, C.; Zinter, M. S.; Kalantar, K.; Yank, G. A.; Christenson, S.; Odonovan, B.; White, C.; Wilson, M. R.; Sapru, A.; Dvorak, C. C.; Miller, S.; Chiu, C. Y.; DeRisi, J. L.
10.1101/102798 — genomics — Posted on 2017-04-10
727 An Arf6- And Caveolae-Dependent Pathway Links Hemidesmosome Remodeling And Mechanoresponse
Osmani, N.; Pontabry, J.; Comelles, J.; Fekonja, N.; Goetz, J. G.; Riveline, D.; Georges-Labouesse, E.; Labouesse, M.
10.1101/126151 — cell biology — Posted on 2017-04-10
730 Dense And Accurate Whole-Chromosome Haplotyping Of Individual Genomes
Porubsky, D.; Garg, S.; Sanders, A. D.; Korbel, J. O.; Guryev, V.; Lansdorp, P. M.; Marschall, T.
10.1101/126136 — bioinformatics — Posted on 2017-04-10
733 Assessing the causal role of body mass index on cardiovascular health in young adults: Mendelian randomization and recall-by-genotype analyses
Wade, K. H.; Chiesa, S. T.; Hughes, A. D.; Chaturvedi, N.; Charakida, M.; Rapala, A.; Muthurangu, V.; Khan, T.; Finer, N.; Sattar, N.; Howe, L. D.; Fraser, A.; Lawlor, D. A.; Davey Smith, G.; Deanfield, J. E.; Timpson, N. J.
10.1101/112912 — epidemiology — Posted on 2017-04-10
740 The Developing Human Connectome Project: a Minimal Processing Pipeline for Neonatal Cortical Surface Reconstruction
Makropoulos, A.; Robinson, E. C.; Schuh, A.; Wright, R.; Fitzgibbon, S.; Bozek, J.; Counsell, S. J.; Steinweg, J.; Passerat-Palmbach, J.; Lenz, G.; Mortari, F.; Tenev, T.; Duff, E. P.; Bastiani, M.; Cordero-Grande, L.; Hughes, E.; Tusor, N.; Tournier, J.-D.; Hutter, J.; Price, A. N.; Murgasova, M.; Kelly, C.; Rutherford, M. A.; Smith, S. M.; Edwards, A. D.; Hajnal, J. V.; Jenkinson, M.; Rueckert, D.
10.1101/125526 — neuroscience — Posted on 2017-04-10
743 Case-control study highlights a different gut microbiome in cirrhotic patients with and without hepatocellular carcinoma
Pinero, F.; Vazquez, M. P.; Bare, P.; Rohr, C.; Mendizabal, M.; Sciara, M.; Alonso, C.; Fay, F.; Silva, M.
10.1101/125575 — cancer biology — Posted on 2017-04-10
747 Toward D-Peptide Biosynthesis: Elongation Factor P Enables Ribosomal Incorporation Of Consecutive D-Amino Acids
Huang, P.-Y.; Wang, F.; Narasimhan, K.; Chatman, K.; Aach, J.; Trauger, S. A.; Spoering, R.; Church, G. M.
10.1101/125930 — biochemistry — Posted on 2017-04-10
748 Comparative Genomic Evidence for Self-Domestication in Homo sapiens
Theofanopoulou, C.; Gastaldon, S.; O'Rourke, T.; Samuels, B. D.; Messner, A.; Martins, P. T.; Delogu, F.; Alamri, S.; Boeckx, C.
10.1101/125799 — genomics — Posted on 2017-04-09
750 Inferring intracellular signal transduction circuitry from molecular perturbation experiments
Wynn, M. L.; Egbert, M.; Consul, N.; Chang, J.; Wu, Z.-F.; Meravjer, S. D.; Schnell, S.
10.1101/107730 — systems biology — Posted on 2017-04-09
751 Can pornography be addictive? An fMRI study of men seeking treatment for problematic pornography use.
Gola, M.; Wordecha, M.; Sescousse, G.; Lew-Starowicz, M.; Kossowski, B.; Wypych, M.; Makeig, S.; Potenza, M.; Marchewka, A.
10.1101/057083 — neuroscience — Posted on 2017-04-09
755 Index Switching Causes "Spreading-Of-Signal" Among Multiplexed Samples In Illumina HiSeq 4000 DNA Sequencing
Sinha, R.; Stanley, G.; Gulati, G. S.; Ezran, C.; Travaglini, K. J.; Wei, E.; Chan, C. K. F.; Nabhan, A. N.; Su, T.; Morganti, R. M.; Conley, S. D.; Chaib, H.; Red-Horse, K.; Longaker, M. T.; Snyder, M. P.; Krasnow, M. A.; Weissman, I. L.
10.1101/125724 — molecular biology — Posted on 2017-04-09
757 Proteomic analysis of cell cycle progression in asynchronous cultures, including mitotic subphases, using PRIMMUS
Ly, T.; Whigham, A.; Clarke, R.; Brenes-Murillo, A. J.; Estes, B.; Wadsworth, P.; Lamond, A. I.
10.1101/125831 — biochemistry — Posted on 2017-04-09
759 Neuromodulatory circuit effects on Drosophila feeding behaviour and metabolism
Eriksson, A.; Raczkowska, M.; Navawongse, R.; Choudhury, D.; Stewart, J.; Tang, Y. L.; Wang, Z.; Claridge-Chang, A.
10.1101/086413 — animal behavior and cognition — Posted on 2017-04-09
764 A protein phosphatase network controls temporal and spatial dynamics of differentiation commitment in human epidermis
Mishra, A.; Pisco, A. O.; Oules, B.; Ly, T.; Liakath-Ali, K.; Walko, G.; Viswanathan, P.; Nijjher, J.; Dunn, S.-J.; Lamond, A. I.; Watt, F. M.
10.1101/125765 — developmental biology — Posted on 2017-04-08
768 Comparative Genomic Evidence For Self-Domestication In Homo sapiens
Theofanopoulou, C.; Gastaldon, S.; O'Rourke, T.; Samuels, B. D.; Messner, A.; Martins, P. T.; Delogu, F.; Alamri, S.; Boeckx, C.
10.1101/125799 — genomics — Posted on 2017-04-08
769 The sequence of a male-specific genome region containing the sex determination switch in Aedes aegypti
Turner, J.; Krishna, R.; Van 't Hof, A. E.; Sutton, E. R.; Matzen, K.; Darby, A. C.
10.1101/122804 — genetics — Posted on 2017-04-08
772 Data-driven Assessment of Structural Image Quality
Rosen, A.; Roalf, D. R.; Ruparel, K.; Blake, J.; Seelaus, K.; Villa, L. P.; Cook, P. A.; Davatzikos, C.; Elliot, M. A.; Garcia De La Garza, A.; Gennatas, E. D.; Quarmley, M.; Schmitt, J. E.; Shionhara, R. T.; Tisdall, M. D.; Craddock, R. C.; Gur, R. E.; Gur, R. C.; Satterthwaite, T. D.
10.1101/125161 — bioinformatics — Posted on 2017-04-08
773 Faucet: streaming de novo assembly graph construction
Rozov, R.; Goldshlager, G.; Halperin, E.; Shamir, R.
10.1101/125658 — bioinformatics — Posted on 2017-04-08
774 Hardwired synthetic lethality within the cohesin complex in human cancer cells
Petronczki, M. P.; van der Lelij, P.; Lieb, S.; Jude, J.; Wutz, G.; Santos, C. P.; Falkenberg, K.; Schlattl, A.; Ban, J.; Schwentner, R.; Kovar, H.; Real, F. X.; Waldman, T.; Pearson, M.; Kraut, N.; Peters, J.-M.; Zuber, J.
10.1101/125708 — cell biology — Posted on 2017-04-08
777 Analysis of DICER1 in familial and sporadic cases of Transposition of the Great Arteries
Sabbaghian, N.; Digilio, M. C.; Blue, G. M.; Winlaw, D. S.; Foulkes, W. D.
10.1101/125633 — genetics — Posted on 2017-04-07
778 Testing the principles of Mendelian randomization: Opportunities and complications on a genomewide scale
Taylor, M.; Tansey, K. E.; Lawlor, D. A.; Bowden, J.; Evans, D. M.; Davey-Smith, G.; Timpson, N. J.
10.1101/124362 — epidemiology — Posted on 2017-04-07
782 Genome-Wide Analysis Of 113,968 Individuals In UK Biobank Identifies Four Loci Associated With Mood Instability.
Ward, J.; Strawbridge, R.; Graham, N.; Bailey, M.; Freguson, A.; Lyall, D.; Cullen, B.; Pidegon, L.; Cavanagh, J.; Mackay, D.; Pell, J.; O'Donovan, M.; Escott-Price, V.; Smith, D. J.
10.1101/117796 — neuroscience — Posted on 2017-04-07
783 Natural variation in a single amino acid underlies cellular responses to topoisomerase II poisons
Zdraljevic, S.; Strand, C.; Seidel, H. S.; Cook, D. E.; Doench, J. G.; Andersen, E. C.
10.1101/125567 — genetics — Posted on 2017-04-07
784 On the genetic and environmental reasons why intelligence correlates with criminal victimization
Boutwell, B.; Connolly, E.; Barbaro, N.; Shackelford, T.; Petkovsek, M.; Beaver, K.
10.1101/113712 — epidemiology — Posted on 2017-04-07
786 The Odd One Out: Arabidopsis Reticulon 20 Has A Role In Lipid Biosynthesis
Kriechbaumer, V.; Maneta-Peyret, L.; Botchway, S. W.; Upson, J.; Hughes, L.; Richardson, J.; Kittelmann, M.; Moreau, P.; Hawes, C.
10.1101/123679 — plant biology — Posted on 2017-04-07
789 Enterococcus faecalis Modulates Immune Activation And Slows Healing During Wound Infection
Chong, K. K. L.; Tay, W. H.; Janela, B.; Yong, M. H. A.; Liew, T. H.; Madden, L.; Keogh, D.; Barkham, T.; Ginhoux, F.; Becker, D. L.; Kline, K. A.
10.1101/125252 — microbiology — Posted on 2017-04-07
791 The Fes tyrosine kinase guides CD19 receptor fate in B-cells by shaping regulatory Src phosphorylation networks
Helbig, A. O.; Kofler, M.; Petsalaki, E.; Gish, G.; Lorenzen, K.; Tucholska, M.; Zhang, C.; Roth, F. P.; Colwill, K.; Pawson, T.
10.1101/125088 — systems biology — Posted on 2017-04-07
794 The Odd One Out: Aabidopsis Reticulon 20 Has A Role In Lipid Biosynthesis
Kriechbaumer, V.; Maneta-Peyret, L.; Botchway, S. W.; Upson, J.; Hughes, L.; Richardson, J.; Kittelmann, M.; Moreau, P.; Hawes, C.
10.1101/123679 — plant biology — Posted on 2017-04-07
799 Integrated Computational Guide Design, Execution, And Analysis Of Arrayed And Pooled CRISPR Genome Editing Experiments
Canver, M. C.; Haeussler, M.; Bauer, D. E.; Orkin, S. H.; Sanjana, N. E.; Shalem, O.; Yuan, G.-C.; Zhang, F.; Concordet, J.-P.; Pinello, L.
10.1101/125245 — molecular biology — Posted on 2017-04-07
803 Linking Dendroecology And Association Genetics: Stress Responses Archived In Tree Rings Associate With SNP Genotypes In Abies alba (Mill.)
Heer, K.; Behringer, D.; Piermattei, A.; Bassler, C.; Fady, B.; Jehl, H.; Liepelt, S.; Lorch, S.; Piotti, A.; Vendramin, G. G.; Weller, M.; Ziegenhagen, B.; Buntgen, U.; Opgenoorth, L.
10.1101/125302 — ecology — Posted on 2017-04-07
805 Assessing Inhibitors Of Mutant Isocitrate Dehydrogenase Using A Suite Of Pre-Clinical Discovery Assays
Urban, D. J.; Martinez, N. J.; Davis, M. I.; Brimacombe, K. R.; Cheff, D. M.; Lee, T. D.; Henderson, M. J.; Titus, S. A.; Pragani, R.; Rohde, J. M.; Wang, Y.; Karavadhi, S.; Shah, P.; Lee, O. W.; Wang, A.; McIver, A.; Zheng, H.; Wang, X.; Xu, X.; Jadhav, A.; Simeonov, A.; Shen, M.; Boxer, M. B.; Hall, M. D.
10.1101/124024 — cancer biology — Posted on 2017-04-07
813 RNA helicase, DDX27 regulates proliferation and myogenic commitment of muscle stem cells
Bennett, A.; ODonohue, M. F.; Gundry, S.; Chan, A.; Widrick, J.; Draper, I.; Chakraborty, A.; Zhou, Y.; Zon, L.; Gleizes, P.-E.; Beggs, A.; Gupta, V.
10.1101/125484 — genetics — Posted on 2017-04-07
814 De novo assembly of microbial genomes from human gut metagenomes using barcoded short read sequences
Moss, E.; Bishara, A.; Tkachenko, E.; Kang, J. B.; Andermann, T. M.; Wood, C.; Handy, C.; Ji, H.; Batzoglou, S.; Bhatt, A. S.
10.1101/125211 — bioinformatics — Posted on 2017-04-07
816 An efficient extension of N-mixture models for multi-species abundance estimation
Gomez, J. P.; Robinson, S. K.; Blackburn, J. K.; Ponciano, J. M.
10.1101/073577 — ecology — Posted on 2017-04-07
817 ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads
Hunt, M.; Mather, A. E.; Sanchez-Buso, L.; Page, A. J.; Parkhill, J.; Keane, J. A.; Harris, S. R.
10.1101/118000 — bioinformatics — Posted on 2017-04-07
820 Response to nitrogen addition reveals metabolic and ecological strategies of soil bacteria
Samad, M. S.; Johns, C.; Richards, K. G.; Lanigan, G. J.; de Klein, C. A. M.; Clough, T. J.; Morales, S. E.
10.1101/107961 — microbiology — Posted on 2017-04-06
822 Dynamical System Modeling to Simulate Donor T Cell Response to Whole Exome Sequencing-Derived Recipient Peptides: Understanding Randomness in Clinical Outcomes Following Stem Cell Transplantation
Koparde, V.; Abdul Razzaq, B.; Suntum, T.; Sabo, R.; Scalora, A.; Serrano, M.; Jameson-Lee, M.; Hall, C.; Kobulnicky, D.; Sheth, N.; Sampson, J.; Reed, J.; Roberts, C.; Qayyum, R.; Buck, G.; Neale, M.; Toor, A.
10.1101/088831 — immunology — Posted on 2017-04-06
823 A sensitized mutagenesis screen in Factor V Leiden mice identifies novel thrombosis suppressor loci
Westrick, R. J.; Tomberg, K.; Siebert, A. E.; Zhu, G.; Winn, M. E.; Dobies, S. L.; Manning, S. L.; Brake, M. A.; Cleuren, A.; Hobbls, L. M.; Mishack, L. M.; Johnston, A.; Kotnik, E. N.; Siemieniak, D. R.; Xu, J.; Li, J. Z.; Saunders, T. L.; Ginsburg, D.
10.1101/080432 — genetics — Posted on 2017-04-06
824 Cycledash: a web application for the interactive analysis and exploration of variants
Hodes, I. A.; Vanderkam, D.; Nathanson, T.; Aksoy, B. A.; Perrone, J.; Hammerbacher, J.
10.1101/125153 — bioinformatics — Posted on 2017-04-06
826 Comprehensive statistical inference of the clonal structure of cancer from multiple biopsies
Liu, J.; Halloran, J.; Bilmes, J.; Daza, R.; Lee, C.; Mahen, E.; Prunkard, D.; Song, C.; Blau, S.; Dorschner, M.; Gadi, V.; Shendure, J.; Blau, A.; Noble, W.
10.1101/125138 — bioinformatics — Posted on 2017-04-06
828 Evidence for time division multiplexing of multiple simultaneous itemsin a sensory coding bottleneck
Caruso, V. C.; Mohl, J. T.; Glynn, C.; Lee, J.; Willett, S. M.; Zaman, A.; Estrada, R.; Tokdar, S.; Groh, J. M.
10.1101/107185 — neuroscience — Posted on 2017-04-06
830 Concentration invariant odor coding
Wilson, C. D.; Serrano, G. O.; Koulakov, A. A.; Rinberg, D.
10.1101/125039 — neuroscience — Posted on 2017-04-06
832 Single Cardiac Ventricular Myosins Change Step-Size with Loading
Wang, Y.; Yuan, C.-C.; Kazmierczak, K.; Szczesna-Cordary, D.; Burghardt, T. P.
10.1101/123166 — biophysics — Posted on 2017-04-06
833 Post-transcriptional regulation of adult CNS axonal regeneration by Cpeb1
Lou, W. P.-K.; Mateos, A.; Koch, M.; Klussmann, S.; Yang, C.; Lu, N.; Limpert, S.; Gopferich, M.; Zschaetzsch, M.; Maillo, C.; Senis, E.; Grimm, D.; Mendez, R.; Liu, K.; Hassan, B. A.; Martin-Villalba, A.
10.1101/125096 — neuroscience — Posted on 2017-04-06
835 Disruption of perineuronal nets increases the frequency of sharp wave ripples
Sun, Z.; Bozzelli, P. L.; Caccavano, A.; Allen, M.; Balmuth, J.; Vicini, S.; Wu, J.-Y.; Conant, K.
10.1101/124677 — neuroscience — Posted on 2017-04-06
836 Burst Activation Of Dopamine Neurons Produces Prolonged Post-Burst Availability Of Actively Released Dopamine
Lohani, S.; Martig, A.; Underhill, S.; DeFrancesco, A.; Roberts, M.; Rinaman, L.; Amara, S.; Moghaddam, B.
10.1101/125062 — neuroscience — Posted on 2017-04-06
839 Four-Sphere Head Model For EEG Signals Revisited
Naess, S.; Chintaluri, C.; Ness, T. B.; Dale, A. M.; Einevoll, G. T.; Wojcik, D. K.
10.1101/124875 — neuroscience — Posted on 2017-04-06
841 Sequence Alignment On Directed Graphs
Vaddadi, K.; Sivadasan, N.; Tayal, K.; Srinivasan, R.
10.1101/124941 — genomics — Posted on 2017-04-06
842 Polygenic prediction of the phenome, across ancestry, in emerging adulthood
Docherty, A. R.; Moscati, A.; Dick, D.; Savage, J. E.; Salvatore, J. E.; Cooke, M.; Aliev, F.; Moore, A. A.; Edwards, A. C.; Riley, B. P.; Adkins, D. E.; Peterson, R.; Webb, B. T.; Bacanu, S. A.; Kendler, K. S.
10.1101/124651 — genomics — Posted on 2017-04-06
849 Kek-6: A Truncated Trk-Like Receptor For Drosophila Neurotrophin 2 Regulates Structural Synaptic Plasticity
Ulian-Benitez, S.; Bishop, S.; Foldi, I.; Wentzell, J.; Okenwa, C.; Forero, M. G.; Zhu, B.; Moreira, M.; Phizacklea, M.; McIlroy, G.; Gay, N. J.; Hidalgo, A.
10.1101/124644 — developmental biology — Posted on 2017-04-06
850 Sex Differences In 20-Hydroxyecdysone Hormone Levels Control Sexual Dimorphism In Bicyclus anynana Butterfly Wing Patterns
Bhardwaj, S.; Prudic, K. L.; Bear, A.; Das Gupta, M.; Wasik, B. R.; Tong, X.; Cheong, W. F.; Wenk, M. R.; Monteiro, A.
10.1101/124834 — developmental biology — Posted on 2017-04-06
851 Establishment In Culture Of Expanded Potential Stem Cells
Yang, J.; Ryan, D.; Wang, W.; Tsang, C.-H. J.; Lan, G.; Gao, X.; Antunes, L.; Wilkinson, A. C.; Yu, Y.; Kolodziejczyk, A.; Campos, L.; Wang, J.; Yang, F.; Tanaka, Y.; Eckersley-Maslin, M.; Woods, M.; Bussell, J.; Ramirez-Solis, R.; Reik, W.; Gottgens, B.; Zou, X.; Lu, L.; Wang, C.; Masaki, H.; White, J.; Nakauchi, H.; Zhong, Z.; Teichmann, S.; Fu, B.; Zhu, Z.; Liu, P.
10.1101/124479 — developmental biology — Posted on 2017-04-06
852 Formin-Dependent Adhesions Are Required For Invasion By Epithelial Tissues
Fessenden, T. B.; Beckham, Y.; Perez-Neut, M.; Chourasia, A. H.; Macleod, K. F.; Oakes, P. W.; Gardel, M. L.
10.1101/124297 — cell biology — Posted on 2017-04-06
854 Resolving Drug Effects In Patient-Derived Cancer Cells Links Organoid Responses To Genome Alterations
Neugebauer, J.; Zickgraf, F. M.; Park, J.; Wagner, S.; Jiang, X.; Jechow, K.; Kleinheinz, K.; Toprak, U. H.; Schneider, M. A.; Meister, M.; Spaich, S.; Suetterlin, M.; Schlesner, M.; Trumpp, A.; Sprick, M.; Eils, R.; Conrad, C.
10.1101/124446 — cancer biology — Posted on 2017-04-06
855 Transcription factor clusters regulate genes in eukaryotic cells
Wollman, A.; Shashkova, S.; Hedlund, E.; Friemann, R.; Hohmann, S.; Leake, M. C.
10.1101/125104 — biophysics — Posted on 2017-04-06
860 Regulation of Life Span by the Gut Microbiota in The Short-Lived African Turquoise Killifish
Smith, P.; Willemsen, D.; Popkes, M.; Metge, F.; Gandiwa, E.; Reichard, M.; Valenzano, D. R.
10.1101/120980 — genomics — Posted on 2017-04-06
862 Self-oligomerization regulates stability of Survival Motor Neuron (SMN) proteins by sequestering an SCFSlmb degron
Gray, K. M.; Kaifer, K. A.; Baillat, D.; Wen, Y.; Bonacci, T. R.; Ebert, A. D.; Raimer, A. C.; Spring, A. M.; Glascock, J. J.; ten Have, S.; Emanuele, M. J.; Lamond, A. I.; Wagner, E. J.; Lorson, C. L.; Matera, A. G.
10.1101/078337 — biochemistry — Posted on 2017-04-06
863 FiloQuant reveals increased filopodia density during DCIS progression
Jacquemet, G.; Paatero, I.; Carisey, A.; Padzik, A.; Orange, J.; Hamidi, H.; Ivaska, J.
10.1101/125047 — cell biology — Posted on 2017-04-06
864 The role of Cdx2 as a lineage specific transcriptional repressor for pluripotent network during trophectoderm and inner cell mass specification
Huang, D.; Han, X.; Yuan, P.; Ralston, A.; Sun, L.; Huss, M.; Mistri, T.; Pinello, L.; Ng, H. H.; Yuan, G.; Ji, J.; Rossant, J.; Robson, P.; Guo, G.
10.1101/124438 — cell biology — Posted on 2017-04-06
874 Recent Regulatory Changes Shaped Human Facial and Vocal Anatomy
Gokhman, D.; Agranat-Tamir, L.; Housman, G.; Nissim-Rafinia, M.; Nieves-Colon, M.; Gu, H.; Ferrando-Bernal, M.; Gelabert, P.; Lipende, I.; Bontrop, R.; Meissner, A.; Stone, A. C.; Pusey, A. E.; Mjungu, D.; Kandel, L.; Liebergall, M.; Prada, M. E.; Vidal, J. M.; Krause, J.; Yakir, B.; Paabo, S.; Reich, D.; Lalueza-Fox, C.; Marques-Bonet, T.; Meshorer, E.; Carmel, L.
10.1101/106955 — systems biology — Posted on 2017-04-05
878 The role of Cdx2 as a lineage specific transcriptional repressor for pluripotent network during trophectoderm and inner cell mass specification
Huang, D.; Han, X.; Yuan, P.; Ralston, A.; Sun, L.; Huss, M.; Mistri, T.; Pinello, L.; Ng, H. H.; Yuan, G.; Ji, J.; Rossant, J.; Robson, P.; Guo, G.
10.1101/124438 — cell biology — Posted on 2017-04-05
882 A Collection Of Genetically Engineered Populus Trees Reveals Wood Biomass Traits That Predict Glucose Yield From Enzymatic Hydrolysis
Escamez, S.; Latha Gandla, M.; Derba-Maceluch, M.; Lundqvist, S.-O.; Mellerowicz, E. J.; Jonsson, L. J.; Tuominen, H.
10.1101/124396 — plant biology — Posted on 2017-04-05
883 Distributed Affective Space Represents Multiple Emotion Categories Across The Brain
Saarimaki, H.; Ejtehadian, L. F.; Glerean, E.; Jaaskelainen, I. P.; Vuilleumier, P.; Sams, M.; Nummenmaa, L.
10.1101/123521 — neuroscience — Posted on 2017-04-05
884 Developmental And Genetic Regulation Of The Human Cortex Transcriptome In Schizophrenia
Jaffe, A. E.; Straub, R. E.; Shin, J. H.; Tao, R.; Gao, Y.; Collado Torres, L.; Kam-Thong, T.; Xi, H. S.; Quan, J.; Chen, Q.; Colantuoni, C.; Ulrich, B.; Maher, B. J.; Deep-Soboslay, A.; The BrainSeq Consortium, ; Cross, A.; Brandon, N. J.; Leek, J. T.; Hyde, T. M.; Kleinman, J. E.; Weinberger, D. R.
10.1101/124321 — neuroscience — Posted on 2017-04-05
890 Mouse embryonic stem cells can differentiate via multiple paths to the same state
Briggs, J. A.; Li, V. C.; Lee, S.; Woolf, C. J.; Klein, A.; Kirschner, M. W.
10.1101/124594 — developmental biology — Posted on 2017-04-05
891 MMTF - an efficient file format for the transmission, visualization, and analysis of macromolecular structures
Bradley, A. R.; Rose, A. S.; Pavelka, A.; Valasatava, Y.; Duarte, J. M.; Prlic, A.; Rose, P. W.
10.1101/122689 — bioinformatics — Posted on 2017-04-05
895 Intracellular Passage Of Na+ In An Active State G Protein Coupled Receptor
Vickery, O. N.; Carvalheda, C. A.; Zaidi, S. A.; Pisliakov, A. V.; Katritch, V.; Zachariae, U.
10.1101/124420 — biophysics — Posted on 2017-04-05
896 HadoopCNV: A Dynamic Programming Imputation Algorithm To Detect Copy Number Variants From Sequencing Data
Yang, H.; Chen, G.; Lima, L.; Fang, H.; Jimenez, L.; Li, M.; Lyon, G. J.; He, M.; Wang, K.
10.1101/124339 — bioinformatics — Posted on 2017-04-05
899 Human self-initiated action is reliably preceded by a process of noise reduction
Khalighinejad, N.; Schurger, A.; Desantis, A.; Zmigrod, L.; Haggard, P.
10.1101/120105 — neuroscience — Posted on 2017-04-05
901 Evidence-based gene models for structural and functional annotations of the oil palm genome
Lim, C. K.; Tatarinova, T. V.; Rosli, R.; Amiruddin, N.; Azizi, N.; Halim, M. A. A.; Shazana, N.; Sanusi, N. M.; Nagappan, J.; Ponomarenko, P.; Triska, M.; Solovyev, V.; Firdaus-Raih, M.; Sambanthamurthi, R.; Murphy, D.; Low Eng Ti, L.
10.1101/111120 — bioinformatics — Posted on 2017-04-05
902 Sympathetic Nerve Activity Promotes Cardiomyocyte Cell-Cycle Arrest And Binucleation
Chen, L.; Payumo, A. Y.; Hirose, K.; Bigley, R. B.; Lovas, J.; Kuruvilla, R.; Huang, G. N.
10.1101/124347 — developmental biology — Posted on 2017-04-05
905 Sleep-Dependent Modulation Of Metabolic Rate In Drosophila
Stahl, B. A.; Slocumb, M.; Chaitin, H.; DiAngelo, J.; Keene, A. C.
10.1101/124198 — neuroscience — Posted on 2017-04-04
908 PREDICTD: PaRallel Epigenomics Data Imputation With Cloud-based Tensor Decomposition
Durham, T. J.; Libbrecht, M. W.; Howbert, J. J.; Bilmes, J.; Noble, W. S.
10.1101/123927 — bioinformatics — Posted on 2017-04-04
912 Standardising and harmonising research data policy in scholarly publishing
Hrynaszkiewicz, I.; Birukou, A.; Astell, M.; Swaminathan, S.; Kenall, A.; Khodiyar, V.
10.1101/122929 — scientific communication and education — Posted on 2017-04-04
914 Dehydration Bouts Prompt Increased Activity And Blood Feeding By Mosquitoes
Hagan, R.; Szuter, E.; Rosselot, A.; Holmes, C.; Siler, S.; Rosendale, A.; Hendershot, J.; Elliott, K.; Jennings, E.; Rizlallah, A.; Xiao, Y.; Watanabe, M.; Romick-Rosendale, L.; Rasgon, J.; Benoit, J.
10.1101/120741 — physiology — Posted on 2017-04-04
916 Multimodal Neural Correlates Of Cognitive Control In The Human Connectome Project
Lerman-Sinkoff, D. B.; Sui, J.; Rachakonda, S.; Kandala, S.; Calhoun, V. D.; Barch, D. M.
10.1101/124123 — neuroscience — Posted on 2017-04-04
917 Modelling And Interpreting Network Dynamics
Khambhati, A. N.; Sizemore, A. E.; Betzel, R. F.; Bassett, D. S.
10.1101/124016 — neuroscience — Posted on 2017-04-04
918 Carbon Fiber On Polyimide Ultra-Microelectrodes
Gillis, W. F.; Lissandrello, C. A.; Shen, J.; Pearre, B. W.; Mertiri, A.; Deku, F.; Cogan, S.; Holinski, B. J.; Chew, D. J.; White, A. E.; Gardner, T. J.; Otchy, T. M.
10.1101/123281 — neuroscience — Posted on 2017-04-04
919 Sex Differences In The Adult Human Brain: Evidence From 5,216 UK Biobank Participants
Ritchie, S. J.; Cox, S. R.; Shen, X.; Lombardo, M. V.; Reus, L. M.; Alloza, C.; Harris, M. A.; Alderson, H.; Hunter, S.; Neilson, E.; Liewald, D. C.; Auyeung, B.; Whalley, H. C.; Lawrie, S. M.; Gale, C. R.; Bastin, M. E.; McIntosh, A. M.; Deary, I. J.
10.1101/123729 — neuroscience — Posted on 2017-04-04
921 Independence Between Pre-mRNA Splicing And De Novo DNA Methylation In An Isogenic Minigene Resource
Nanan, K. K.; Ocheltree, C.; Sturgill, D.; Mandler, M. D.; Prigge, M.; Varma, G.; Oberdoerffer, S.
10.1101/124073 — molecular biology — Posted on 2017-04-04
922 Uncovering The Repertoire Of Endogenous Flaviviral Elements In Aedes Mosquito Genomes
Suzuki, Y.; Frangeul, L.; Dickson, L. B.; Blanc, H.; Verdier, Y.; Vinh, J.; Lambrechts, L.; Saleh, M.-C.
10.1101/124032 — microbiology — Posted on 2017-04-04
924 Father Absence And Accelerated Reproductive Development
Gaydosh, L.; Belsky, D. W.; Domingue, B. W.; Boardman, J. D.; Harris, K. M.
10.1101/123711 — genetics — Posted on 2017-04-04
928 Regulatory Divergence In Wound-Responsive Gene Expression In Domesticated And Wild Tomato
Liu, M.-J.; Sugimoto, K.; Uygun, S.; Panchy, N.; Campbell, M. S.; Yandell, M.; Howe, G. A.; Shiu, S.-H.
10.1101/123992 — evolutionary biology — Posted on 2017-04-04
929 Cohesin Can Remain Associated With Chromosomes During DNA Replication
Rhodes, J.; Haarhuis, J.; Grimm, J.; Rowland, B.; Lavis, L.; Nasmyth, K.
10.1101/124107 — cell biology — Posted on 2017-04-04
933 Revealing The Cell-Material Interface With Nanometer Resolution By FIB-SEM
Santoro, F.; Zhao, W.; Joubert, L.-M.; Duan, L.; Schnitker, J.; van de Burgt, Y.; Lou, H.-Y.; Liu, B.; Salleo, A.; Cui, L.; Cui, Y.; Cui, B.
10.1101/123794 — biophysics — Posted on 2017-04-04
939 A Chiral Selectivity Relaxed Paralog Of DTD For Proofreading tRNA Mischarging In Animalia
Kuncha, S. K.; Mazeed, M.; Singh, R.; Kattula, B.; Routh, S. B.; Sankaranarayanan, R.
10.1101/123919 — biochemistry — Posted on 2017-04-04
940 A Comprehensive Reanalysis Of Publicly Available GWAS Datasets Reveals An X Chromosome Rare Regulatory Variant Associated With High Risk For Type 2 Diabetes.
Bonas-Guarch, S.; Guindo-Martinez, M.; Miguel-Escalada, I.; Grarup, N.; Sebastian, D.; Rodriguez-Fos, E.; Sanchez, F.; Planas-Felix, M.; Cortes-Sanchez, P.; Gonzalez, S.; Timshel, P.; Pers, T. H.; Morgan, C. C.; Moran, I.; Gonzalez, J. R.; Andersson, E. A.; Diaz, C.; Badia, R. M.; Udler, M.; Flannick, J.; Jorgensen, T.; Linneberg, A.; Jorgensen, M. E.; Witte, D. R.; Christensen, C.; Brandslund, I.; Appel, E. V.; Scott, R. A.; Luan, J.; Langenberg, C.; Wareham, N. J.; InterAct Consortium, ; The SIGMA T2D Consortium, ; Pedersen, O.; Zorzano, A.; Florez, J. C.; Hansen, T.; Ferrer, J.; Mercader,
10.1101/112219 — genetics — Posted on 2017-04-04
943 Paternally inherited noncoding structural variants contribute to autism
Brandler, W. M.; Antaki, D.; Gujral, M.; Kleiber, M. L.; Maile, M. S.; Hong, O.; Chapman, T. R.; Tan, S.; Tandon, P.; Pang, T.; Tang, S. C.; Vaux, K. K.; Yang, Y.; Harrington, E.; Juul, S.; Turner, D. J.; Kingsmore, S. F.; Gleeson, J. G.; Kakaradov, B.; Telenti, A.; Venter, J. C.; Corominas, R.; Cormand, B.; Rueda, I.; Messer, K. S.; Nievergelt, C. M.; Arranz, M. J.; Courchesne, E.; Pierce, K.; Muotri, A. R.; Iakoucheva, L. M.; Hervas, A.; Corsello, C.; Sebat, J.
10.1101/102327 — genomics — Posted on 2017-04-04
946 Cross-talk between active DNA demethylation, resetting of cellular metabolism and shoot apical growth in poplar bud break
Conde, D.; Perales, M.; Le Gac, A.-L.; Dervinis, C.; Kirst, M.; Maury, S.; Gonzalez-Melendi, P.; Allona, I.
10.1101/122119 — plant biology — Posted on 2017-04-03
949 Linkage disequilibrium dependent architecture of human complex traits reveals action of negative selection
Gazal, S.; Finucane, H.; Furlotte, N. A.; Loh, P.-R.; Palamara, P. F.; Liu, X.; Schoech, A.; Bulik-Sullivan, B.; Neale, B. M.; Gusev, A.; Price, A. L.
10.1101/082024 — genetics — Posted on 2017-04-03
951 Exonic mosaic mutations contribute risk for autism spectrum disorder
Krupp, D. R.; Barnard, R. A.; Duffourd, Y.; Evans, S.; Mulqueen, R. M.; Bernier, R.; Riviere, J.-B.; Fombonne, E.; O'Roak, B. J.
10.1101/083428 — genetics — Posted on 2017-04-03
952 A Role For The F-Box Protein HAWAIIAN SKIRT In Plant miRNA Function
Lang, P.; Christie, M.; Dogan, E.; Schwab, R.; Hagmann, J.; Van de Weyer, A.-L.; Weigel, D.
10.1101/123703 — plant biology — Posted on 2017-04-03
955 Human Self-Initiated Action Is Preceded By A Reliable Process Of Noise Reduction
Khalighinejad, N.; Schurger, A.; Desantis, A.; Zmigrod, L.; Haggard, P.
10.1101/120105 — neuroscience — Posted on 2017-04-03
957 Paternally inherited noncoding structural variants contribute to autism
Brandler, W. M.; Antaki, D.; Gujral, M.; Kleiber, M. L.; Maile, M. S.; Hong, O.; Chapman, T. R.; Tan, S.; Tandon, P.; Pang, T.; Tang, S. C.; Vaux, K. K.; Yang, Y.; Harrington, E.; Juul, S.; Turner, D. J.; Kingsmore, S. F.; Gleeson, J. G.; Kakaradov, B.; Telenti, A.; Venter, J. C.; Corominas, R.; Cormand, B.; Rueda, I.; Messer, K. S.; Nievergelt, C. M.; Arranz, M. J.; Courchesne, E.; Pierce, K.; Muotri, A. R.; Iakoucheva, L. M.; Hervas, A.; Corsello, C.; Sebat, J.
10.1101/102327 — genomics — Posted on 2017-04-03
961 Detecting Drug-Target Binding In Cells Using Fluorescence Activated Cell Sorting Coupled With Mass Spectrometry Analysis
Wilson, K.; Webster, S. P.; Iredale, J. P.; Zheng, X.; Homer, N. Z. M.; Pham, N.; Auer, M.; Mole, D. J.
10.1101/121988 — pharmacology and toxicology — Posted on 2017-04-03
962 Serotonin Buffers Hippocampal Neuroplasticity And Emotional Behavior
Maddaloni, G.; Migliarini, S.; Napolitano, F.; Giorgi, A.; Biasci, D.; De Felice, A.; Galbusera, A.; Franceschi, S.; Lessi, F.; La Ferla, M.; Aretini, P.; Mazzanti, C. M.; Gozzi, A.; Usiello, A.; Pasqualetti, M.
10.1101/123646 — neuroscience — Posted on 2017-04-03
964 Evolution Of Coprophagy And Nutrient Absorption In A Cave Salamander
Soares, D.; Roenfeldt, R.; Hammond, S.; Slay, M. E.; Fenolio, D. B.; Niemiller, M. L.
10.1101/123661 — animal behavior and cognition — Posted on 2017-04-03
968 CiliaCarta: An Integrated And Validated Compendium Of Ciliary Genes
van Dam, T. J. P.; Kennedy, J.; van der Lee, R.; de Vrieze, E.; Wunderlich, K. A.; Rix, S.; Dougherty, G. W.; Lambacher, N. J.; Li, C.; Jensen, V. L.; Leroux, M. R.; Hjeij, R.; Horn, N.; Texier, Y.; Wissinger, Y.; van Reeuwijk, J.; Wheway, G.; Knapp, B.; Scheel, J. F.; Franco, B.; Mans, D. A.; van Wijk, E.; Kepes, F.; Slaats, G. G.; Toedt, G.; Kremer, H.; Omran, H.; Szymanska, K.; Koutroumpas, K.; Ueffing, M.; Nguyen, T.-M. T.; Letteboer, S. J. F.; Oud, M. M.; van Beersum, S. E. C.; Schmidts, M.; Beales, P. L.; Lu, Q.; Giles, R. H.; Szklarczyk, R.; Russell, R. B.; Gibson, T. J.; Johnson, C. A.
10.1101/123455 — bioinformatics — Posted on 2017-04-03
970 Ablation Of Complex Fractionated Electrograms Improves Outcome In Long Standing Persistent Atrial Fibrillation
Martin, C.; Curtain, J. P.; Gajendragadkar, P. R.; Begley, D. A.; Fynn, S. P.; Grace, A. A.; Heck, P. M.; Virdee, M. S.; Agarwal, S.
10.1101/123463 — systems biology — Posted on 2017-04-03
971 Improved Outcome And Cost Effectiveness In Ablation Of Persistent Atrial Fibrillation Under General Anaesthetic
Martin, C.; Curtain, J. P.; Gajendragadkar, P. R.; Begley, D. A.; Fynn, S. P.; Grace, A. A.; Heck, P. M.; Salaunkey, K.; Virdee, M. S.; Agarwal, S.
10.1101/123448 — systems biology — Posted on 2017-04-03
973 Novel Repolarisation Metric Predicts Arrhythmia Origin And Clinical Events In ARVC And Brugada Syndrome
Martin, C.; Orini, M.; Srinivasan, N.; Bhar-Amato, J.; Honarbakhsh, S.; Chow, A.; Lowe, M.; Simon, R.; Elliott, P.; Taggart, P.; Lambiase, P.
10.1101/123422 — physiology — Posted on 2017-04-03
975 Brainwide Mapping Of Endogenous Serotonergic Transmission Via Chemogenetic-fMRI
Giorgi, A.; Migliarini, S.; Gritti, M.; Galbusera, A.; Maddaloni, G.; De Luca, M. A.; Tonini, R.; Gozzi, A.; Pasqualetti, M.
10.1101/122770 — neuroscience — Posted on 2017-04-03
978 Development Of Amplicon Deep Sequencing Markers And Data Analysis Pipeline For Genotyping Multi-Clonal Malaria Infections
Lerch, A.; Koepfli, C.; Hofmann, N.; Messerli, C.; Wilcox, S.; Kattenberg, J. H.; Betuela, I.; O'Connor, L.; Mueller, I.; Felger, I.
10.1101/121426 — microbiology — Posted on 2017-04-03
979 Unbiased Definition Of A Shared T-Cell Receptor Motif Enables Population-Based Studies Of Tuberculosis
DeWitt, W. S.; Quan, K. K.; Wilburn, D.; Sherwood, A.; Vignali, M.; DeRosa, S. C.; Day, C. L.; Scriba, T. J.; Robins, H. S.; Swanson, W.; Emerson, R. O.; Seshadri, C.
10.1101/123174 — immunology — Posted on 2017-04-03
983 The Spectrum Of De Novo Variants In Neurodevelopmental Disorders With Epilepsy
Heyne, H. O.; EuroEPINOMICS RES Consortium, ; Abou Jamra, R.; Caglayan, H.; Craiu, D.; De Jonghe, P.; Guerrini, R.; Helbig, K. L.; Koeleman, B. P. C.; Kosmicki, J. A.; Linnankivi, T.; May, P.; Muhle, H.; Moeller, R. S.; Neubauer, B.; Palotie, A.; Pendziwiat, M.; Stamberger, H.; Striano, P.; Tang, S.; Wu, S.; Daly, M. J.; Poduri, A.; Weber, Y.; Weckhuysen, S.; Sisodiya, S. M.; Helbig, I.; Lal, D.; Lemke, J. R.
10.1101/123323 — genetics — Posted on 2017-04-03
996 Joint analysis of area and thickness as a replacement for the analysis of cortical volume
Winkler, A. M.; Greve, D. N.; Bjuland, K. J.; Nichols, T. E.; Sabuncu, M. R.; Haberg, A. K.; Skranes, J.; Rimol, L. M.
10.1101/074666 — neuroscience — Posted on 2017-04-02
998 Gene ORGANizer: Linking Genes to the Organs They Affect
Gokhman, D.; Kelman, G.; Amartely, A.; Gershon, G.; Tsur, S.; Carmel, L.
10.1101/106948 — genomics — Posted on 2017-04-02
1000 Ethoscopes: An Open Platform For High-Throughput Ethomics
Geissmann, Q.; Garcia Rodriguez, L.; Beckwith, E. J.; French, A. S.; Jamasb, A. R.; Gilestro, G. F.
10.1101/113647 — animal behavior and cognition — Posted on 2017-04-02
1001 Generation And Comparative Analysis Of Full-Length Transcriptomes In Sweetpotato And Its Putative Ancestor
Luo, Y.; Ding, N.; Shi, X.; Wu, Y.; Wang, R.; Pei, L.; Xu, R.; Cheng, S.; Lian, Y.; Gao, J.; Wang, A.; Tang, J.; Cao, Q.
10.1101/112425 — plant biology — Posted on 2017-04-02
1004 A Comprehensive Reanalysis Of Publicly Available GWAS Datasets Reveals An X Chromosome Rare Regulatory Variant Associated With High Risk For Type 2 Diabetes.
Bonas-Guarch, S.; Guindo-Martinez, M.; Miguel-Escalada, I.; Grarup, N.; Sebastian, D.; Rodriguez-Fos, E.; Sanchez, F.; Planas-Felix, M.; Cortes-Sanchez, P.; Gonzalez, S.; Timshel, P.; Pers, T. H.; Morgan, C. C.; Moran, I.; Gonzalez, J. R.; Andersson, E. A.; Diaz, C.; Badia, R. M.; Udler, M.; Flannick, J.; Jorgensen, T.; Linneberg, A.; Jorgensen, M. E.; Witte, D. R.; Christensen, C.; Brandslund, I.; Appel, E. V.; Scott, R. A.; Luan, J.; Langenberg, C.; Wareham, N. J.; InterAct Consortium, ; The SIGMA T2D Consortium, ; Pedersen, O.; Zorzano, A.; Florez, J. C.; Hansen, T.; Ferrer, J.; Mercader,
10.1101/112219 — genetics — Posted on 2017-04-02
1008 Myomerger Induces Fusion Of Non-Fusogenic Cells And Is Required For Myoblast Fusion
Quinn, M.; Goh, Q.; Kurosaka, M.; Gamage, D.; Petrany, M.; Prasad, V.; Millay, D.
10.1101/123158 — developmental biology — Posted on 2017-04-02
1009 Transcription Activation Of Early Human Development Suggests DUX4 As An Embryonic Regulator
Tohonen, V.; Katayama, S.; Vesterlund, L.; Sheikhi, M.; Antonsson, L.; Filippini-Cattaneo, G.; Jaconi, M.; Johnsson, A.; Linnarsson, S.; Hovatta, O.; Kere, J.
10.1101/123208 — developmental biology — Posted on 2017-04-02
1010 CogStack - Experiences Of Deploying IntegratedInformation Retrieval And Extraction Services In A Large National Health Service Foundation Trust Hospital
Jackson, R.; Agrawal, A.; Lui, K.; Folarin, A.; Wu, H.; Groza, T.; Roberts, A.; Gorrell, G.; Song, X.; Lewsley, D.; Northwood, D.; Stringer, C.; Stewart, R.; Dobson, R.
10.1101/123299 — bioinformatics — Posted on 2017-04-02
1019 PTSD Blood Transcriptome Mega-Analysis: Shared Inflammatory Pathways Across Genders And Modes Of Traumas
Breen, M. S.; Tylee, D. S.; Maihofer, A. X.; Neylan, T. C.; Mehta, D.; Binder, E.; Chandler, S. D.; Kremen, W. S.; Risbrough, V. B.; Woelk, C. H.; Baker, D. G.; Nievergelt, C. M.; Tsuang, M. T.; Buxbaum, J. D.; Glatt, S. J.
10.1101/123182 — neuroscience — Posted on 2017-04-01
1020 A Robust Targeted Sequencing Approach For Low Input And Variable Quality DNA From Clinical Samples
So, A.; Vilborg, A.; Bouhlal, Y.; Koehler, R.; Grimes, S.; Pouliot, Y.; Mendoza, D.; Goodsaid, F.; Lucero, M.; De La Vega, F. M.; Ji, H. P.
10.1101/123117 — genomics — Posted on 2017-04-01
1021 Secretogranin-II Plays A Critical Role In Zebrafish Neurovascular Modeling
Tao, B.; Hu, H.; Mitchell, K.; Chen, J.; Jia, H.; Zhu, Z.; Trudeau, V.; Hu, W.
10.1101/123125 — developmental biology — Posted on 2017-04-01
1022 Proteomic Analysis Defines Kinase Taxonomies Specific For Subtypes Of Breast Cancer
Collins, K. A.; Stuhlmiller, T. J.; Zawistowski, J. S.; East, M. P.; Pham, T. T.; Hall, C. R.; Goulet, D. R.; Bevill, S. M.; Angus, S. P.; Velarde, S. H.; Sciaky, N.; Graves, L. M.; Johnson, G. L.; Gomez, S. M.
10.1101/122739 — cancer biology — Posted on 2017-04-01
1024 Sec17 (α-SNAP) And An SM-Tethering Complex Control The Outcome Of SNARE Zippering In Vitro And In Vivo
Schwartz, M. L.; Nickerson, D. P.; Lobingier, B. T.; Angers, C. G.; Zick, M.; Merz, A.
10.1101/123133 — biochemistry — Posted on 2017-04-01
1025 Characterisation Of The Biflavonoid Hinokiflavone As A Pre-mRNA Splicing Modulator That Inhibits SENP
Pawellek, A.; Ryder, U.; Tammsalu, T.; King, L. J.; Kreinin, H.; Ly, T.; Hay, R. T.; Hartley, R.; Lamond, A. I.
10.1101/123026 — biochemistry — Posted on 2017-04-01
1026 The C-Terminal Domain Of ParB Is Critical For Dynamic DNA Binding And Bridging Interactions Which Condense The Bacterial Centromere
Fisher, G. L. M.; Pastrana, C. L.; Higman, V. A.; Koh, A.; Taylor, J. A.; Butterer, A.; Craggs, T. D.; Sobott, F.; Murray, H.; Crump, M. P.; Moreno-Herrero, F.; Dillingham, M.
10.1101/122986 — biochemistry — Posted on 2017-04-01