bioRxiv/medRxiv TRiP Review Activity

234 Reviews — GigaScience — Bioinformatics

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Developing best practices for genotyping-by-sequencing analysis using linkage maps as benchmarks
Taniguti, C. H., Taniguti, L. M., Amadeu, R. R., Mollinari, M., Pereira, G. d. S., Riera-Lizarazu, O., Lau, J., Byrne, D., Gesteira, G. d. S., Oliveira, T. d. P., Ferreira, G. C., Garcia, A. A. F.
10.1101/2022.11.24.517847 — Posted: 2022-11-25 — Discussion: 2023-11-13  GigaScience
Computational prediction of human deep intronic variation
Barbosa, P., Savisaar, R., Carmo-Fonseca, M., Fonseca, A.
10.1101/2023.02.17.528928 — Posted: 2023-02-17 — Discussion: 2023-11-13  GigaScience
Integrating deep mutational scanning and low-throughput mutagenesis data to predict the impact of amino acid variants
Fu, Y., Bedo, J., Papenfuss, A. T., Rubin, A. F.
10.1101/2022.12.14.520494 — Posted: 2022-12-16 — Discussion: 2023-10-17  GigaScience
Predicting Drug Repurposing Candidates and Their Mechanisms from A Biomedical Knowledge Graph
Ma, C., Zhou, Z., Liu, H., Koslicki, D.
10.1101/2022.11.29.518441 — Posted: 2022-12-02 — Discussion: 2023-09-04  GigaScience
GADMA2: more efficient and flexible demographic inference from genetic data
Noskova, E., Abramov, N., Iliutkin, S., Sidorin, A., Dobrynin, P., Ulyantsev, V.
10.1101/2022.06.14.496083 — Posted: 2022-06-17 — Discussion: 2023-09-04  GigaScience
MuLan-Methyl - Multiple Transformer-based Language Models for Accurate DNA Methylation Prediction
Zeng, W., Gautam, A., Huson, D. H.
10.1101/2023.01.04.522704 — Posted: 2023-01-04 — Discussion: 2023-08-21  GigaScience
SODAR: enabling, modeling, and managing multi-omics integration studies
Nieminen, M., Stolpe, O., Kuhring, M., Weiner, J., Pett, P., Beule, D., Holtgrewe, M.
10.1101/2022.08.19.504516 — Posted: 2022-08-22 — Discussion: 2023-08-21  GigaScience
Metaphor - A workflow for streamlined assembly and binning of metagenomes
Salazar, V. W., Shabban, B., del Mar Quiroga, M., Turnbull, R., Tescari, E., Marcelino, V. R., Verbruggen, H., Le Cao, K.-A.
10.1101/2023.02.09.527784 — Posted: 2023-02-10 — Discussion: 2023-08-21  GigaScience
Hetnet connectivity search provides rapid insights into how two biomedical entities are related
Himmelstein, D. S., Zietz, M., Rubinetti, V., Kloster, K., Heil, B. J., Alquaddoomi, F., Hu, D., Nicholson, D. N., Hao, Y., Sullivan, B. D., Nagle, M. W., Greene, C. S.
10.1101/2023.01.05.522941 — Posted: 2023-01-07 — Discussion: 2023-08-21  GigaScience
EraSOR: Erase Sample Overlap in polygenic score analyses
Choi, S. W., Mak, T. S. H., Hoggart, C. J., O'Reilly, P. F.
10.1101/2021.12.10.472164 — Posted: 2021-12-13 — Discussion: 2023-07-04  GigaScience

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