Channel:  DREAM

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

22 Articles

Reverse-engineering human olfactory perception from chemical features of odor molecules
Keller, A., Gerkin, R. C., Guan, Y., Dhurandhar, A., Turu, G., Szalai, B., Mainland, J. D., Ihara, Y., Yu, C. W., Wolfinger, R., Vens, C., Schietgat, L., De Grave, K., Norel, R., DREAM Olfaction Prediction Challenge Consortium, , Stolovitzky, G., Cecchi, G., Vosshall, L. B., Meyer, P.
10.1101/082495 — Posted: 2016-10-21
A community-based collaboration to build prediction models for short-term discontinuation of docetaxel in metastatic castration-resistant prostate cancer
Seyednasrollah, F., Koestler, D. C., Wang, T., Piccolo, S. R., Vega, R., Greiner, R., Fuchs, C., Gofer, E., Kumar, L., Wolfinger, R. D., Kanigel Winner, K., Bare, C., Neto, E. C., Yu, T., Shen, L., Abdallah, K., Norman, T., Stolovitzky, G., PCC-DREAM Community, , Soule, H., Sweeney, C. J., Ryan, C. J., Scher, H. I., Sartor, O., Elo, L. L., Zhou, F. L., Guinney, J., Costello, J. C.
10.1101/087809 — Posted: 2016-11-17
Germline Contamination and Leakage in Whole Genome Somatic Single Nucleotide Variant Detection
Sendorek, D. H., Caloian, C., Ellrott, K., Bare, J. C., Yamaguchi, T. N., Ewing, A. D., Houlahan, K. E., Norman, T. C., Margolin, A. A., Stuart, J. M., Boutros, P. C.
10.1101/204370 — Posted: 2017-10-17
Valection: Design Optimization for Validation and Verification Studies
Cooper, C. I., Yao, D., Sendorek, D. H., Yamaguchi, T. N., P'ng, C., Houlahan, K. E., Caloian, C., Fraser, M., SMC-DNA Challenge Participants, , Ellrott, K., Margolin, A. A., Bristow, R. G., Stuart, J. M., Boutros, P. C.
10.1101/254839 — Posted: 2018-01-28
A cancer pharmacogenomic screen powering crowd-sourced advancement of drug combination prediction
Menden, M. P., Wang, D., Guan, Y., Mason, M., Szalai, B., Bulusu, K. C., Yu, T., Kang, J., Jeon, M., Wolfinger, R., Nguyen, T., Zaslavskiy, M., AstraZeneca-Sanger Drug Combination DREAM Consorti, , Jang, I. S., Ghazoui, Z., Ahsen, M. E., Vogel, R., Chaibub Neto, E., Norman, T., Tang, E. K., Garnett, M. J., Di Veroli, G., Fawell, S., Stolovitzky, G., Guinney, J., Dry, J. R., Saez-Rodriguez, J.
10.1101/200451 — Posted: 2018-02-13
Stratification of amyotrophic lateral sclerosis patients: a crowdsourcing approach
Kueffner, R., Zach, N., Bronfeld, M., Norel, R., Atassi, N., Balagurusamy, V., di Camillo, B., Chio, A., Cudkowicz, M., Dillenberger, D., Garcia-Garcia, J., Hardiman, O., Hoff, B., Knight, J., Leitner, M. L., Li, G., Mangravite, L., Norman, T., Wang, L., The ALS Stratification Consortium, , Xiao, J., Fang, W.-C., Peng, J., Stolovitzky, G.
10.1101/294231 — Posted: 2018-04-05
A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection
Fourati, S., Talla, A., Mahmoudian, M., Burkhart, J. G., Klen, R., Henao, R., Aydin, Z., Yeung, K. Y., Ahsen, M. E., Almugbel, R., Jahandideh, S., Liang, X., Nordling, T. E. M., Shiga, M., Stanescu, A., Vogel, R., The Respiratory Viral DREAM Challenge Consortium, , Pandey, G., Chiu, C., McClain, M. T., Woods, C. W., Ginsburg, G. S., Elo, L. L., Tsalik, E. L., Mangravite, L. M., Sieberts, S. K.
10.1101/311696 — Posted: 2018-04-30
Identifying biomarkers of anti-cancer drug synergy using multi-task learning
Aben, N., de Ruiter, J. R., Bosdriesz, E., Kim, Y., Bounova, G., Vis, D. J., Wessels, L. F. A., Michaut, M.
10.1101/243568 — Posted: 2018-08-23
Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic structural variant detection
Lee, A. Y.-W., Ewing, A. D., Ellrott, K., Hu, Y., Houlahan, K. E., Bare, J. C., Espiritu, S. M. G., Huang, V., Dang, K., Chong, Z., Caloian, C., Yamaguchi, T. N., ICGC-TCGA DREAM Somatic Mutation Calling Challenge Participants, , Kellen, M. R., Chen, K., Norman, T. C., Friend, S. H., Guinney, J., Stolovitzky, G., Haussler, D., Margolin, A. A., Stuart, J. M., Boutros, P. C.
10.1101/224733 — Posted: 2018-08-28
Assessment of network module identification across complex diseases
Choobdar, S., Ahsen, M. E., Crawford, J., Tomasoni, M., Fang, T., Lamparter, D., Lin, J., Hescott, B., Hu, X., Mercer, J., Natoli, T., Narayan, R., The DREAM Module Identification Challenge Consorti, , Subramanian, A., Zhang, J. D., Stolovitzky, G., Kutalik, Z., Lage, K., Slonim, D. K., Saez-Rodriguez, J., Cowen, L. J., Bergmann, S., Marbach, D.
10.1101/265553 — Posted: 2019-07-30

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