Channel: University of California, San Diego

This collection includes bioRxiv and medRxiv papers from authors at University of California, San Diego.

4327 Articles

Complex system modelling reveals oxalate homeostasis is driven by diverse oxalate-degrading bacteria

Mukherjee, S. D., Batagello, C., Adler, A., Agudelo, J., Zampini, A., Suryavanshi, M., Nguyen, A., Orr, T., Dearing, D., Monga, M., Miller, A. W.

10.1101/2024.10.28.620613 — Posted: 2025-02-19

Whole genome sequence-based association analysis of African American individuals with bipolar disorder and schizophrenia

Li, R., Gagliano Taliun, S. A., Liao, K. L., Flickinger, M., Sobell, J. L., Genovese, G., Locke, A. E., Chiu, R. R., LeFaive, J., Wang, J., Martins, T. M., Chapman, S. B., Neumann, A., Handsaker, R. E., Arnett, D. K., Barnes, K. C., Boerwinkle, E., Braff, D., Cade, B. E., Fornage, M., Gibbs, R. A., Hoth, K. F., Hou, L., Kooperberg, C., Loos, R. J. F., Metcalf, G. A., Montgomery, C. G., Morrison, A. C., Qin, Z. S., Redline, S., Reiner, A. P., Rich, S. S., Rotter, J. I., Taylor, K. D., Viaud-Martinez, K. A., NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, , Genomic Psychiatry Coho

10.1101/2024.12.27.24319111 — Posted: 2025-02-19

Arousal as a universal embedding for spatiotemporal brain dynamics

Raut, R. V., Rosenthal, Z. P., Wang, X., Miao, H., Zhang, Z., Lee, J.-M., Raichle, M. E., Bauer, A. Q., Brunton, S. L., Brunton, B. W., Kutz, J. N.

10.1101/2023.11.06.565918 — Posted: 2025-02-18

Deep sequencing of a large family of isogenic mice enables complex variants discovery and accurate phenotype mapping

Villani, F., Sasani, T. A., Maksimov, M., Gunturkun, M. H., Ma, N., Ren, Y.-y., Rothschild, D., Chen, H., Lu, L., Dumont, B. L., Harris, K., Gymrek, M., Colonna, V., Pritchard, J. K., Palmer, A. A., Williams, R. W., Ashbrook, D. G.

10.1101/2022.04.21.489063 — Posted: 2025-02-18

A subset of conserved phagocytic genes are likely used for the intracellular theft of cnidarian stinging organelles in nudibranch gastropods

Goodheart, J. A., Fiorenza, R., Rio, R., Lopez-Anido, R. N., Martin, N. J., Herrlinger, T. J., Tarvin, R. D., Lyons, D. C.

10.1101/2025.02.13.637864 — Posted: 2025-02-17

Accept-reject decision-making revealed via a quantitative and ethological study of C. elegans foraging

Haley, J. A., Chen, T., Aoi, M., Chalasani, S. H.

10.1101/2024.09.18.613674 — Posted: 2025-02-15

VASCilia (Vision Analysis StereoCilia): A Napari Plugin for Deep Learning-Based 3D Analysis of Cochlear Hair Cell Stereocilia Bundles

Kassim, Y. M., Rosenberg, D. B., Das, S., Huang, Z., Rahman, S., Al Shammaa, I., Salim, S., Huang, K., Renero, A., Miller, C., Ninoyu, Y., Friedman, R. A., Indzhykulian, A. A., Manor, U.

10.1101/2024.06.17.599381 — Posted: 2025-02-15

OMKar: optical map based automated karyotyping of genomes to identify constitutional abnormalities

Raeisi Dehkordi, S., Jia, Z., Estabrook, J., Hauenstein, J., Miller, N., Guleray-Lafci, N., Neesen, J., Hastie, A., Chaubey, A., Wing Chun Pang, A., Dremsek, P., Bafna, V.

10.1101/2025.02.13.25322211 — Posted: 2025-02-14

Development and validation of a machine learning model to predict cognitive behavioral therapy outcome in obsessive-compulsive disorder using clinical and neuroimaging data

van de Mortel, L. A., Bruin, W. B., Alonso, P., Bertolin, S., Feusner, J. D., Guo, J., Hagen, K., Hansen, B., Martinez-Zalacain, I., Menchon, J. M., Nurmi, E. L., O'Neill, J., Piacentini, J. C., Real, E., Segalas, C., Soriano-Mas, C., Thomopoulos, S. I., Thorsen, A. L., Stein, D. J., Thompson, P. M., van den Heuvel, O. A., van Wingen, G. A.

10.1101/2025.02.14.25322265 — Posted: 2025-02-14

Daily ultrastructural remodeling of clock neurons

Ispizua, J. I., Rodriguez-Caron, M., Tassara, F. J., Kim, K.-y., Perkins, C. I., Barzi, M., Carpio-Romero, C., Vasquez, M., Hansen, C. N., Gargiulo, J., Rosato, E., de la iglesia, H., Ellisman, M., Ceriani, M. F.

10.1101/2024.11.06.622332 — Posted: 2025-02-13

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