bioRxiv/medRxiv TRiP Review Activity

28 Reviews — Peer Community In — Bioinformatics

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HaploCharmer: a Snakemake workflow for read-scale haplotype calling adapted to polyploids
Rio, S., Abdallah, S., Durand, T., DHont, A., Garsmeur, O.
10.1101/2025.03.14.642807 — Posted: 2025-03-17 — Discussion: 2025-09-21  Peer Community In
The De-Modifier: a tool for screening modification-induced alternate peptide taxonomy in palaeoproteomics
Evans, M.
10.1101/2025.01.09.632126 — Posted: 2025-01-13 — Discussion: 2025-09-15  Peer Community In
EnVhog: an extended view of the viral protein space on Earth
Bucio, R. E. P., Enault, F., Galiez, C.
10.1101/2024.06.25.600602 — Posted: 2024-06-27 — Discussion: 2025-08-11  Peer Community In
A systematic assessment of phylogenomic approaches for microbial species tree reconstruction
Weiner, S., Feng, Y., Gogarten, J. P., Bansal, M. S.
10.1101/2024.11.20.624597 — Posted: 2024-11-21 — Discussion: 2025-07-01  Peer Community In
Particular sequence characteristics induce bias in the detection of polymorphic transposable element insertions
Verneret, M., Le, V. A., Faraut, T., Turpin, J., Lerat, E.
10.1101/2024.09.25.614865 — Posted: 2024-09-26 — Discussion: 2025-05-21  Peer Community In
Faster model-based estimation of ancestry proportions
Meisner, J., Santander, C., Refoyo Martinez, A.
10.1101/2024.07.08.602454 — Posted: 2024-07-11 — Discussion: 2024-11-18  Peer Community In
mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms
Barnabe, C., Sempere, G., Manzanilla, V., Moo Millan, J., Amblard-Rambert, A., Waleckx, E.
10.1101/2024.02.08.579441 — Posted: 2024-02-11 — Discussion: 2024-10-23  Peer Community In
Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins
Rodriguez Palomo, I., Nair, B. A. B., Chiang, Y., Dekker, J., Dartigues, B., Mackie, M., Evans, M., Macleod, R., Olsen, J., Collins, M. J.
10.1101/2023.12.15.571577 — Posted: 2023-12-15 — Discussion: 2024-10-21  Peer Community In
HairSplitter: haplotype assembly from long, noisy reads
Faure, R., Lavenier, D., Flot, J.-F.
10.1101/2024.02.13.580067 — Posted: 2024-02-14 — Discussion: 2024-10-02  Peer Community In
Detection and identification of transposable element transcripts using Long Read RNA-seq in Drosophila germline tissues
Rebollo, R., Cumunel, E., Mary, A., Sabot, F., Burlet, N., Gillet, B., Hughes, S., Siqueira Oliveira, D., Goubert, C., Fablet, M., Vieira, C., Lacroix, V.
10.1101/2023.05.27.542554 — Posted: 2023-05-30 — Discussion: 2024-08-06  Peer Community In

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