bioRxiv/medRxiv TRiP Review Activity

33 Reviews — Peer Community In — Bioinformatics

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Evaluating the use of Monte Carlo simulation for statistically assessing topological congruence of phylogenetic trees
DuBose, J. G.
10.1101/2025.02.07.637028 — Posted: 2025-02-08 — Discussion: 2025-12-12  Peer Community In
Rehabilitating the benefits of gene tree correction in the presence of incomplete lineage sorting
Scornavacca, C., Lafond, M.
10.1101/2025.07.09.663893 — Posted: 2025-07-10 — Discussion: 2025-12-11  Peer Community In
Bulk-based hypothesis weighing to increase power in single-cell differential expression analysis
Germain, P.-L., Robinson, M. D.
10.1101/2025.04.15.648932 — Posted: 2025-04-19 — Discussion: 2025-11-28  Peer Community In
GrAnnoT, a tool for effecient and reliable annotation transfer through pangenome graph
Marthe, N., Zytnicki, M., Sabot, F.
10.1101/2025.02.26.640337 — Posted: 2025-03-02 — Discussion: 2025-11-06  Peer Community In
Deep learning versus geometric morphometrics for archaeobotanical domestication study and subspecific identification
Bonhomme, V., Bouby, L., Claude, J., Dham, C., Gros-Balthazard, M., Ivorra, S., Jeanty, A., Pagnoux, C., Pastor, T., Terral, J.-F., Evin, A.
10.1101/2023.09.15.557939 — Posted: 2023-09-15 — Discussion: 2025-10-23  Peer Community In
HaploCharmer: a Snakemake workflow for read-scale haplotype calling adapted to polyploids
Rio, S., Abdallah, S., Durand, T., DHont, A., Garsmeur, O.
10.1101/2025.03.14.642807 — Posted: 2025-03-17 — Discussion: 2025-09-21  Peer Community In
The De-Modifier: a tool for screening modification-induced alternate peptide taxonomy in palaeoproteomics
Evans, M.
10.1101/2025.01.09.632126 — Posted: 2025-01-13 — Discussion: 2025-09-15  Peer Community In
EnVhog: an extended view of the viral protein space on Earth
Bucio, R. E. P., Enault, F., Galiez, C.
10.1101/2024.06.25.600602 — Posted: 2024-06-27 — Discussion: 2025-08-11  Peer Community In
A systematic assessment of phylogenomic approaches for microbial species tree reconstruction
Weiner, S., Feng, Y., Gogarten, J. P., Bansal, M. S.
10.1101/2024.11.20.624597 — Posted: 2024-11-21 — Discussion: 2025-07-01  Peer Community In
Particular sequence characteristics induce bias in the detection of polymorphic transposable element insertions
Verneret, M., Le, V. A., Faraut, T., Turpin, J., Lerat, E.
10.1101/2024.09.25.614865 — Posted: 2024-09-26 — Discussion: 2025-05-21  Peer Community In

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