bioRxiv/medRxiv TRiP Review Activity

37 Reviews — Peer Community In — Bioinformatics

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Better confidence intervals in simulation-based inference
Rousset, F., Leblois, R., Estoup, A., Marin, J.-M.
10.1101/2024.09.30.615940 — Posted: 2024-10-02 — Discussion: 2026-04-16  Peer Community In
rnaends: an R package targeted to study the exact RNA ends at the nucleotide resolution
Caetano, T., Redder, P., Fichant, G., Barriot, R.
10.1101/2025.04.18.649472 — Posted: 2025-04-23 — Discussion: 2026-03-31  Peer Community In
Cenote-Taker 3 for Fast and Accurate Virus Discovery and Annotation of the Virome
Tisza, M. J., Petrosino, J. F., Cregeen, S. J. J.
10.1101/2025.08.20.671380 — Posted: 2025-08-24 — Discussion: 2026-03-17  Peer Community In
Benchmarking circRNA Detection Tools from Long-Read Sequencing Using Data-Driven and Flexible Simulation Framework
Rusakovich, A., CORRE, S., Cadieu, E., Fraboulet, R.-M., Galibert, M.-D., Derrien, T., Blum, Y.
10.1101/2025.04.17.649290 — Posted: 2025-04-23 — Discussion: 2026-03-04  Peer Community In
Evaluating the use of Monte Carlo simulation for statistically assessing topological congruence of phylogenetic trees
DuBose, J. G.
10.1101/2025.02.07.637028 — Posted: 2025-02-08 — Discussion: 2025-12-12  Peer Community In
Rehabilitating the benefits of gene tree correction in the presence of incomplete lineage sorting
Scornavacca, C., Lafond, M.
10.1101/2025.07.09.663893 — Posted: 2025-07-10 — Discussion: 2025-12-11  Peer Community In
Bulk-based hypothesis weighing to increase power in single-cell differential expression analysis
Germain, P.-L., Robinson, M. D.
10.1101/2025.04.15.648932 — Posted: 2025-04-19 — Discussion: 2025-11-28  Peer Community In
GrAnnoT, a tool for effecient and reliable annotation transfer through pangenome graph
Marthe, N., Zytnicki, M., Sabot, F.
10.1101/2025.02.26.640337 — Posted: 2025-03-02 — Discussion: 2025-11-06  Peer Community In
Deep learning versus geometric morphometrics for archaeobotanical domestication study and subspecific identification
Bonhomme, V., Bouby, L., Claude, J., Dham, C., Gros-Balthazard, M., Ivorra, S., Jeanty, A., Pagnoux, C., Pastor, T., Terral, J.-F., Evin, A.
10.1101/2023.09.15.557939 — Posted: 2023-09-15 — Discussion: 2025-10-23  Peer Community In
HaploCharmer: a Snakemake workflow for read-scale haplotype calling adapted to polyploids
Rio, S., Abdallah, S., Durand, T., DHont, A., Garsmeur, O.
10.1101/2025.03.14.642807 — Posted: 2025-03-17 — Discussion: 2025-09-21  Peer Community In

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