bioRxiv/medRxiv TRiP Review Activity

389 Reviews — GigaScience — All Subjects

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Cell type-specific interpretation of noncoding variants using deep learning-based methods
Sindeeva, M., Chekanov, N., Avetisian, M., Baranov, N., Malkin, E., Lapin, A., Kardymon, O., Fishman, V.
10.1101/2021.12.31.474623 — Posted: 2022-01-01 — Discussion: 2023-04-10  GigaScience
Contamination detection and microbiome exploration with GRIMER
Piro, V. C., Renard, B. Y.
10.1101/2021.06.22.449360 — Posted: 2021-06-22 — Discussion: 2023-04-10  GigaScience
ViReMa: A Virus Recombination Mapper of Next-Generation Sequencing data characterizes diverse recombinant viral nucleic acids
Sotcheff, S., Zhou, Y., Sun, Y., Johnson, J. E., Torbett, B., Routh, A. L.
10.1101/2022.03.12.484090 — Posted: 2022-03-13 — Discussion: 2023-04-10  GigaScience
What the Phage: A scalable workflow for the identification and analysis of phage sequences
Marquet, M., Hölzer, M., Pletz, M. W., Viehweger, A., Makarewicz, O., Ehricht, R., Brandt, C.
10.1101/2020.07.24.219899 — Posted: 2020-07-25 — Discussion: 2023-03-24  GigaScience
Defining the Characteristics of Type I Interferon Stimulated Genes: Insight from Expression Data and Machine Learning
Chai, H., Hughes, J., Gu, Q., Robertson, D. L.
10.1101/2021.10.08.463622 — Posted: 2021-10-09 — Discussion: 2023-03-24  GigaScience
3D-Beacons: Decreasing the gap between protein sequences and structures through a federated network of protein structure data resources
Varadi, M., Nair, S. S., Sillitoe, I., Tauriello, G., Anyango, S., Bienert, S., Borges, C., Deshpande, M., Green, T., Hatos, A., Hegedus, T., Hekkelman, M. L., Joosten, R., Jumper, J., Laydon, A., Molodenskiy, D., Piovesan, D., Salladini, E., Salzberg, S. L., Sommer, M. J., Steinegger, M., Suhajda, E., Svergun, D., Tenorio-Ku, L., Tosatto, S., Tunyasuvunakool, K., Waterhouse, A. M., Zidek, A., Hassabis, D., Schwede, T., Orengo, C., Velankar, S.
10.1101/2022.08.01.501973 — Posted: 2022-08-03 — Discussion: 2023-03-24  GigaScience
Whole-genome sequencing of Chinese native goat offers biological insights into cashmere fiber formation
Han, H., Yang, M.-M., Jiang, D., Zhang, X.-J., Wei, Q., Chen, T., Wang, Q.-J., Yang, C.-Y., Wulan, B., Zhang, T.-T., Gang, G., Mengke, D., LI, B., Deng, W.-D., Miao, Z.-P., Wang, R., Zhang, Q.-F., Li, L., CHao, S.-Y., Fang, M., Li, Y.
10.1101/2021.11.06.467539 — Posted: 2021-11-06 — Discussion: 2023-03-24  GigaScience
Utilizing artificial intelligence system to build the digital structural proteome of reef-building corals
Zhu, Y., Liao, X., Han, T., Chen, J.- Y., He, C., Lu, Z.
10.1101/2022.06.27.497859 — Posted: 2022-06-30 — Discussion: 2023-03-24  GigaScience
Making Common Fund data more Findable: Catalyzing a Data Ecosystem
Charbonneau, A. L., Brady, A., Brown, C. T., Sansone, S.-A., Ma'ayan, A., Wagner, R., Carter, R., Harris, R. M., Gingrich, A., Lim, M. C. W., Munro, J. B., Clarke, D. J. B., Creasy, H. H., Rocca-Serra, P., Jeon, M., Liming, R. L., Schuler, R. E., Romano, C., Chard, K., Giglio, M., Nadendla, S., Hodges, T. K., Mandal, M., Canchi, S., Waldrop, A., White, O.
10.1101/2021.11.05.467504 — Posted: 2021-11-08 — Discussion: 2023-03-24  GigaScience
Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows
Suetake, H., Fukusato, T., Igarashi, T., Ohta, T.
10.1101/2022.07.08.499265 — Posted: 2022-07-10 — Discussion: 2023-03-05  GigaScience

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