Channel:  Allen Institute for Cell Science

11 Articles

Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model
Hammer, M., Huisman, M., Rigano, A., Boehm, U., Chambers, J. J., Gaudreault, N., North, A. J., Pimentel, J. A., Sudar, D., Bajcsy, P., Brown, C. M., Corbett, A. D., Faklaris, O., Lacoste, J., Laude, A., Nelson, G., Nitschke, R., Farzam, F., Smith, C., Grunwald, D., Strambio-De-Castillia, C.
10.1101/2021.04.25.441198 — Posted: 2021-05-31
A comprehensive analysis of gene expression changes in a high replicate and open-source dataset of differentiating hiPSC-derived cardiomyocytes
Grancharova, T., Gerbin, K. A., Rosenberg, A. B., Roco, C. M., Arakaki, J., DeLizzo, C., Dinh, S. Q., Donovan-Maiye, R., Hirano, M., Nelson, A., Tang, J., Theriot, J. A., Yan, C., Menon, V., Palecek, S. P., Seelig, G., Gunawardane, R. N.
10.1101/2021.04.22.441027 — Posted: 2021-04-23
Robust integrated intracellular organization of the human iPS cell: where, how much, and how variable
Viana, M. P., Chen, J., Knijnenburg, T. A., Vasan, R., Yan, C., Arakaki, J. E., Bailey, M., Berry, B., Borensztejn, A., Brown, J. M., Carlson, S., Cass, J. A., Chaudhuri, B., Cordes Metzler, K. R., Coston, M. E., Crabtree, Z. J., Davidson, S., DeLizo, C. M., Dhaka, S., Dinh, S. Q., Do, T. P., Domingus, J., Donovan-Maiye, R. M., Foster, T. J., Frick, C. L., Fujioka, G., Fuqua, M. A., Gehring, J. L., Gerbin, K. A., Grancharova, T., Gregor, B. W., Harrylock, L. J., Haupt, A., Hendershott, M. C., Hookway, C., Horwitz, A. R., Hughes, C., Isaac, E. J., Johnson, G. R., Kim, B., Leonard, A. N., Leung
10.1101/2020.12.08.415562 — Posted: 2021-01-13
Automated hiPSC culture and sample preparation for 3D live cell microscopy
Coston, M. E., Gregor, B. W., Arakaki, J., Borensztejn, A., Do, T. P., Fuqua, M. A., Haupt, A., Hendershott, M. C., Leung, W., Mueller, I. A., Nelson, A. M., Rafelski, S. M., Swain-Bowden, M. J., Tang, W. J., Thirstrup, D. J., Wiegraebe, W., Yan, C., Gunawardane, R. N., Gaudreault, N.
10.1101/2020.12.18.423371 — Posted: 2020-12-19
The Allen Cell and Structure Segmenter: a new open source toolkit for segmenting 3D intracellular structures in fluorescence microscopy images
Chen, J., Ding, L., Viana, M. P., Lee, H., Sluezwski, M. F., Morris, B., Hendershott, M. C., Yang, R., Mueller, I. A., Rafelski, S. M.
10.1101/491035 — Posted: 2020-12-13
Cell states beyond transcriptomics: integrating structural organization and gene expression in hiPSC-derived cardiomyocytes
Gerbin, K. A., Grancharova, T., Donovan-Maiye, R., Hendershott, M. C., Brown, J., Dinh, S. Q., Gehring, J. L., Hirano, M., Johnson, G. R., Nath, A., Nelson, A., Roco, C. M., Rosenberg, A. B., Sluzewski, M. F., Viana, M. P., Yan, C., Zaunbrecher, R. J., Cordes Metzler, K. R., Menon, V., Palecek, S. P., Seelig, G., Gaudreault, N., Knijnenburg, T., Rafelski, S. M., Theriot, J. A., Gunawardane, R. N.
10.1101/2020.05.26.081083 — Posted: 2020-05-27
Scarless gene tagging of transcriptionally silent genes in hiPSCs to visualize cardiomyocyte sarcomeres in live cells
Roberts, B., Arakaki, J., Gerbin, K. A., Malik, H., Nelson, A., Hendershott, M. C., Hookway, C., Ludmann, S. A., Mueller, I. A., Yang, R., Rafelski, S. M., Gunawardane, R. N.
10.1101/342881 — Posted: 2018-06-09
Label-free prediction of three-dimensional fluorescence images from transmitted light microscopy
Ounkomol, C., Seshamani, S., Maleckar, M. M., Collman, F., Johnson, G.
10.1101/289504 — Posted: 2018-05-23
Building a 3D Integrated Cell
Johnson, G. R., Donovan-Maiye, R. M., Maleckar, M. M.
10.1101/238378 — Posted: 2017-12-21
Three dimensional cross-modal image inference: label-free methods for subcellular structure prediction
Ounkomol, C., Fernandes, D. A., Seshamani, S., Maleckar, M. M., Collman, F., Johnson, G. R.
10.1101/216606 — Posted: 2017-12-21

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