Channel:  Harvard Program in Therapeutic Sciences

114 Articles

Highly Multiplexed 3D Profiling of Cell States and Immune Niches in Human Tumours
Yapp, C., Nirmal, A. J., Zhou, F. Y., Wong, A. Y. H., Tefft, J., Lu, Y. D., Shang, Z., Maliga, Z., Montero Llopis, P., Murphy, G. F., Lian, C., Danuser, G., Santagata, S., Sorger, P. K.
10.1101/2023.11.10.566670 — Posted: 2025-04-11
Universal consensus 3D segmentation of cells from 2D segmented stacks
Zhou, F. Y., Marin, Z., Yapp, C., Zou, Q., Nanes, B. A., Daetwyler, S., Jamieson, A., Islam, M. T., Jenkins, E., Gihana, G. M., Lin, J., Borges, H. M., Chang, B.-J., Weems, A., Morrison, S. J., Sorger, P. K., Fiolka, R. P., Dean, K. M., Danuser, G.
10.1101/2024.05.03.592249 — Posted: 2025-03-20
Transitions in the proteome and phospho-proteome during early embryonic development in Xenopus
Van Itallie, E., Sonnett, M., Kalocsay, M., Wuhr, M., Peshkin, L., Kirschner, M. W.
10.1101/2021.08.05.455309 — Posted: 2025-02-17
Longitudinal and multimodal auditing of tumor adaptation to CDK4/6 inhibitors in HR+ metastatic breast cancers
Creason, A. L., Egger, J., Watson, C., Sivagnanam, S., Chin, K., MacPherson, K., Lin, J.-R., Chen, Y.-A., Johnson, B. E., Feiler, H. S., Galipeau, D., Navin, N. E., Demir, E., Chang, Y. H., Corless, C. L., Mitri, Z. I., Thomas, G., Sorger, P. K., Adey, A. C., Coussens, L. M., Gray, J. W., Mills, G. B., Goecks, J.
10.1101/2023.09.27.557464 — Posted: 2025-01-06
Multimodal Spatial Profiling Reveals Immune Suppression and Microenvironment Remodeling in Fallopian Tube Precursors to High-Grade Serous Ovarian Carcinoma
Kader, T., Lin, J.-R., Hug, C., Coy, S., Chen, Y.-A., de Bruijn, I., Shih, N., Jung, E., Pelletier, R. J., Leon, M. L., Mingo, G., Omran, D. K., Lee, J. S., Yapp, C., Satravada, B. A., Kundra, R., Xu, Y., Chan, S., Tefft, J., Muhlich, J. L., Kim, S., Gysler, S. M., Agudo, J., Heath, J. R., Schultz, N., Drescher, C., Sorger, P. K., Drapkin, R., Santagata, S.
10.1101/2024.09.25.615007 — Posted: 2024-09-27
Integrating spatial profiles and cancer genomics to identify immune-infiltrated mismatch repair proficient colorectal cancers
Wala, J., de Bruijn, I., Coy, S., Gagne, A., Chan, S., Chen, Y.-A., Hoffer, J., Muhlich, J., Schultz, N., Santagata, S., Sorger, P.
10.1101/2024.09.24.614701 — Posted: 2024-09-26
PRAME expression in melanoma is negatively regulated by TET2-mediated DNA hydroxymethylation
Fang, R., Vallius, T., Zhang, A., Van Cura, D., Alicandri, F., Fischer, G., Draper, E., Xu, S., Pelletier, R., Katsyv, I., Sorger, P. K., Murphy, G. F., Lian, C. G.
10.1101/2024.07.26.605293 — Posted: 2024-07-26
Sharing Data from the Human Tumor Atlas Network through Standards, Infrastructure, and Community Engagement
de Bruijn, I., Nikolov, M., Lau, C., Clayton, A., Gibbs, D. L., Mitraka, E., Pozhideyeva, D., Lash, A., Sumer, S. O., Altreuter, J., Anton, K., DeFelice, M., Li, X., Lisman, A., Longabaugh, W. J. R., Muhlich, J., Sandro, S., Nandakumar, S., Peter, S. K., Suver, C., Schultz, N., Taylor, A. J., Thorsson, V., Cerami, E., Eddy, J. A.
10.1101/2024.06.25.598921 — Posted: 2024-06-30
psudo: Exploring Multi-Channel Biomedical Image Data with Spatially and Perceptually Optimized Pseudocoloring
Warchol, S., Troidl, J., Muhlich, J. L., Krueger, R., Hoffer, J., Lin, T., Beyer, J., Glassman, E., Sorger, P. K., Pfister, H.
10.1101/2024.04.11.589087 — Posted: 2024-06-15
TYK2 as a novel therapeutic target in Alzheimer Disease
Konig, L., Rodriguez, S., Hug, C., Daneshvari, S., Chung, A., Bradshaw, G., Sahin, A., Zhou, G., Eisert, R., Piccioni, F., Das, S., Kalocsay, M., Sokolov, A., Sorger, P., Root, D., Albers, M. W.
10.1101/2024.06.04.595773 — Posted: 2024-06-06

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