bioRxiv/medRxiv TRiP Review Activity

526 Reviews — All Partners — Bioinformatics

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Modelling multicellular coordination by bridging cell-cell communication and intracellular regulation through multilayer networks
Trimbour, R., Ramirez Flores, R. O., Saez-Rodriguez, J., Cantini, L.
10.64898/2026.01.20.700561 — Posted: 2026-01-22 — Discussion: 2026-05-27  Review Commons
A comprehensive dimensional reduction framework to learn single-cell phenotypic topology uncovers T cell diversity
Sidarta-Oliveira, D., Velloso, L. A.
10.1101/2022.03.14.484134 — Posted: 2022-03-17 — Discussion: 2026-05-22  eLife
ProteinConformers: large-scale and energetically profiled descriptions of protein conformational landscapes
Zhou, Y., Wei, C., Sun, M., Wang, L., Song, J., Xu, F., Li, Y., Zheng, W., Zhang, Y.
10.64898/2026.02.20.707011 — Posted: 2026-02-20 — Discussion: 2026-05-13  eLife
Establishing benchmarks for quantitative mapping of m6A by Nanopore Direct RNA Sequencing
Ohnezeit, D., Loliashvili, E., Putzel, G., Verstraten, R., Liu, J., Nicholson, L. S., Pironti, A., Jaffrey, S. R., Depledge, D. P., Wilson, A. C.
10.1101/2025.11.02.686099 — Posted: 2025-11-02 — Discussion: 2026-05-05  eLife
Sample-level modeling of single-cell data at scale with tinydenseR
Milanez-Almeida, P., Schildknecht, D., Linder, M., Brachmann, S. M., Weiss, A., Adler, F., Lenticchia, S. C., Meistertzheim, M., Wild, S., Cuttat, R., Jayaraman, P., Lee, L. H., Mulvey, T., Hassounah, N., Crafts, G., Quinn, D. S., Orlando, E. J.
10.1101/2025.11.26.690752 — Posted: 2025-11-30 — Discussion: 2026-05-05  Review Commons
scfetch: an R package to access and format single-cell RNA sequencing datasets from public repositories
Song, Y., Gao, J., Wang, J.
10.1101/2023.11.18.567507 — Posted: 2023-11-20 — Discussion: 2026-04-28  GigaScience
HVRLocator: A Computationally Efficient Tool for Identifying Hypervariable Regions in 16S rRNA Big Datasets
Arboleda-Baena, C., Borim Correa, F., Saraiva, J. P., Castillo, S., Kasmanas, J. C., Chatzinotas, A., Jurburg, S. D.
10.1101/2025.07.24.666487 — Posted: 2025-07-29 — Discussion: 2026-04-28  GigaScience
Better confidence intervals in simulation-based inference
Rousset, F., Leblois, R., Estoup, A., Marin, J.-M.
10.1101/2024.09.30.615940 — Posted: 2024-10-02 — Discussion: 2026-04-16  Peer Community In
Gene specificity landscapes for comparative transcriptomic analysis across tissues, cell types, and species
Bot, E., Davila-Velderrain, J.
10.1101/2025.06.04.657813 — Posted: 2025-06-04 — Discussion: 2026-04-15  eLife
MADRe: Strain-Level Metagenomic Classification Through Assembly-Driven Database Reduction
Lipovac, J., Sikic, M., Vicedomini, R., Krizanovic, K.
10.1101/2025.05.12.653324 — Posted: 2025-05-15 — Discussion: 2026-04-10  GigaScience

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