bioRxiv/medRxiv TRiP Review Activity

518 Reviews — All Partners — Bioinformatics

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MADRe: Strain-Level Metagenomic Classification Through Assembly-Driven Database Reduction
Lipovac, J., Sikic, M., Vicedomini, R., Krizanovic, K.
10.1101/2025.05.12.653324 — Posted: 2025-05-15 — Discussion: 2026-04-10  GigaScience
scDenorm: a denormalisation tool for integrating single-cell transcriptomics data
Huang, Y., Pournara, A. V., Ao, Y., Yang, L., Zhang, H., Zhang, Y., Liu, S., Brazma, A., Papatheodorou, I., Yang, X., Shi, M., Miao, Z.
10.1101/2025.05.10.653289 — Posted: 2025-05-15 — Discussion: 2026-04-09  GigaScience
rnaends: an R package targeted to study the exact RNA ends at the nucleotide resolution
Caetano, T., Redder, P., Fichant, G., Barriot, R.
10.1101/2025.04.18.649472 — Posted: 2025-04-23 — Discussion: 2026-03-31  Peer Community In
Comparative analysis of eccDNA and circRNA tools shows increased accuracy of tool combination
Zabala, A., Ascension, A. M., Prada-Luengo, I., Otaegui, D.
10.1101/2025.07.14.664708 — Posted: 2025-07-18 — Discussion: 2026-03-20  GigaScience
TOGGLE identifies fate and function process within a single type of mature cell through single-cell transcriptomics
Chen, J., Jiang, E., Chen, Z., Liu, K., Sun, T., Nong, Y., Kong, Y., Yuan, T., Daga, P., Dai, C. C., Yan, Y., Ge, J., Wu, H., Yang, T., Wang, S., Su, Z., Li, C., Li, Y., Yang, K., Singhal, R. A., Carll, A. P.
10.1101/2025.01.01.631041 — Posted: 2025-01-02 — Discussion: 2026-03-19  Review Commons
Cenote-Taker 3 for Fast and Accurate Virus Discovery and Annotation of the Virome
Tisza, M. J., Petrosino, J. F., Cregeen, S. J. J.
10.1101/2025.08.20.671380 — Posted: 2025-08-24 — Discussion: 2026-03-17  Peer Community In
Benchmarking circRNA Detection Tools from Long-Read Sequencing Using Data-Driven and Flexible Simulation Framework
Rusakovich, A., CORRE, S., Cadieu, E., Fraboulet, R.-M., Galibert, M.-D., Derrien, T., Blum, Y.
10.1101/2025.04.17.649290 — Posted: 2025-04-23 — Discussion: 2026-03-04  Peer Community In
Investigating the native functions of -carbon monoxide dehydrogenase through genomic context analysis
Land, H., Böhm, M.
10.1101/2025.09.14.676152 — Posted: 2025-09-19 — Discussion: 2026-03-02  eLife
Graph-Regularized Optimal Transport for Single-Cell Data Integration
Wang, Z., Zhan, Q., Shen, L.
10.1101/2024.10.30.621072 — Posted: 2024-11-02 — Discussion: 2026-02-24  GigaScience
Enhanced semantic classification of microbiome sample origins using Large Language Models (LLMs)
Gaio, D., Tackmann, J., Perez-Molphe-Montoya, E., Napflin, N., Patsch, D., Malfertheiner, L., von Mering, C.
10.1101/2025.04.24.650461 — Posted: 2025-04-27 — Discussion: 2026-02-24  GigaScience

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