bioRxiv/medRxiv TRiP Review Activity

336 Reviews — GigaScience — All Subjects

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SODAR: enabling, modeling, and managing multi-omics integration studies
Nieminen, M., Stolpe, O., Kuhring, M., Weiner, J., Pett, P., Beule, D., Holtgrewe, M.
10.1101/2022.08.19.504516 — Posted: 2022-08-22 — Discussion: 2023-08-21  GigaScience
Metaphor - A workflow for streamlined assembly and binning of metagenomes
Salazar, V. W., Shabban, B., del Mar Quiroga, M., Turnbull, R., Tescari, E., Marcelino, V. R., Verbruggen, H., Le Cao, K.-A.
10.1101/2023.02.09.527784 — Posted: 2023-02-10 — Discussion: 2023-08-21  GigaScience
A new haplotype-resolved turkey genome to enable turkey genetics and genomics research
Barros, C. P., Derks, M. F., Mohr, J., Wood, B., Crooijmans, R. P., Megens, H.-J., Bink, M. C., Groenen, M. A.
10.1101/2022.08.18.504375 — Posted: 2022-08-18 — Discussion: 2023-08-21  GigaScience
MuLan-Methyl - Multiple Transformer-based Language Models for Accurate DNA Methylation Prediction
Zeng, W., Gautam, A., Huson, D. H.
10.1101/2023.01.04.522704 — Posted: 2023-01-04 — Discussion: 2023-08-21  GigaScience
Training Infrastructure as a Service
Rasche, H., Gruening, B. A.
10.1101/2020.08.23.263509 — Posted: 2020-08-24 — Discussion: 2023-07-04  GigaScience
EraSOR: Erase Sample Overlap in polygenic score analyses
Choi, S. W., Mak, T. S. H., Hoggart, C. J., O'Reilly, P. F.
10.1101/2021.12.10.472164 — Posted: 2021-12-13 — Discussion: 2023-07-04  GigaScience
FriendlyClearMap: An optimized toolkit for mouse brain mapping and analysis
Negwer, M., Bosch, B., Bormann, M., Hesen, R., Lütje, L., Aarts, L., Rossing, C., Nadif Kasri, N., Schubert, D.
10.1101/2023.02.16.528882 — Posted: 2023-02-18 — Discussion: 2023-06-19  GigaScience
Strategies and Techniques for Quality Control and Semantic Enrichment with Multimodal Data: A Case Study in Colorectal Cancer with eHDPrep
Toner, T., Miller, P., Forster, T., Coleman, H., Overton, I. M.
10.1101/2022.09.07.506953 — Posted: 2022-09-09 — Discussion: 2023-06-19  GigaScience
TF-Prioritizer: a java pipeline to prioritize condition-specific transcription factors
Hoffmann, M., Trummer, N., Jankowski, J., Lee, H. K., Willruth, L.-L., Yuan, K., Lazareva, O., Baumgarten, N., Schmidt, F., Baumbach, J., Schulz, M. H., Blumenthal, D. B., Hennighausen, L., List, M.
10.1101/2022.10.19.512881 — Posted: 2022-10-21 — Discussion: 2023-06-19  GigaScience
A workflow reproducibility scale for automatic validation of biological interpretation results.
Suetake, H., Fukusato, T., Igarashi, T., Ohta, T.
10.1101/2022.10.11.511695 — Posted: 2022-10-13 — Discussion: 2023-06-19  GigaScience

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