Channel: Rosetta Commons

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

33 Articles

Structural basis for peptide substrate specificities of glycosyltransferase GalNAc-T2

Mahajan, S. P., Srinivasan, Y., Labonte, J. W., DeLisa, M. P., Gray, J. J.

10.1101/2020.06.25.171371 — Posted: 2020-10-16

Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

Koehler Leman, J., Lyskov, S., Lewis, S., Adolf-Bryfogle, J., Alford, R. F., Barlow, K., Ben-Aharon, Z., Farrell, D., Fell, J., Hansen, W. A., Harmalkar, A., Jeliazkov, J., Krys, J. D., Kuenze, G., Ljubetic, A., Loshbaugh, A. L., Maguire, J., Moretti, R., Mulligan, V. K., Nguyen, P. T., OConchuir, S., Roy Burman, S. S., Smith, S. T., Teets, F., Tiemann, J. K., Watkins, A., Woods, H., Yachnin, B. J., Bahl, C. D., Bailey-Kellogg, C., Baker, D., Das, R., DiMaio, F., Khare, S. D., Kortemme, T., Labonte, J. W., Lindorff-Larsen, K., Meiler, J., Schief, W., Schueler-Furman, O., Siegel, J., Stein, A.

10.1101/2021.04.04.438423 — Posted: 2021-04-05

Diverse scientific benchmarks for implicit membrane energy functions

Alford, R. F., Gray, J. J.

10.1101/2020.06.23.168021 — Posted: 2020-06-24

Robustification of RosettaAntibody and Rosetta SnugDock

Jeliazkov, J. R., Frick, R., Zhou, J., Gray, J. J.

10.1101/2020.05.26.116210 — Posted: 2020-05-26

Geometric Potentials from Deep Learning Improve Prediction of CDR H3 Loop Structures

Ruffolo, J. A., Guerra, C., Mahajan, S. P., Sulam, J., Gray, J. J.

10.1101/2020.02.09.940254 — Posted: 2020-02-10

PRosettaC: Rosetta based modeling of PROTAC mediated ternary complexes

Zaidman, D., London, N.