Channel:  Human Cell Atlas

185 Articles

Inference of single cell profiles from histology stains with the Single-Cell omics from Histology Analysis Framework (SCHAF)
Comiter, C., Chen, X., Vaishnav, E. D., Kobayashi-Kirschvink, K. J., Ciapmricotti, M., Zhang, K., Murray, J., Monticolo, F., Qi, J., Tanaka, R., Brodowska, S. E., Li, B., Yang, Y., Rodig, S. J., Karatza, A., Quintanal Villalonga, A., Turner, M., Pfaff, K. L., Jane-Valbuena, J., Slyper, M., Waldman, J., Vigneau, S., Wu, J., Blosser, T. R., Segerstolpe, A., Abravanel, D., Wagle, N., Demehri, S., Zhuang, X., Rudin, C. M., Klughammer, J., Rozenblatt-Rosen, O., Stultz, C. M., Shu, J., Regev, A.
10.1101/2023.03.21.533680 — Posted: 2025-06-13
Systematic evaluation of single-cell multimodal data integration for comprehensive human reference atlas.
Acera-Mateos, M., Adiconis, X., Li, J.-K., Marchese, D., Caratu, G., Hon, C.-C., Tiwari, P., Kojima, M., Vieth, B., Murphy, M. A., Simmons, S. K., Lefevre, T., Claes, I., O'Connor, C. L., Menon, R., Otto, E. A., Ando, Y., Vandereyken, K., Kretzler, M., Bitzer, M., Fraenkel, E., Voet, T., Enard, W., Carnici, P., Heyn, H., Levin, J. Z., Mereu, E.
10.1101/2025.03.06.637075 — Posted: 2025-03-06
Singletrome: A method to analyze and enhance the transcriptome with long noncoding RNAs for single cell analysis
RAHMAN, R. U., Ahmad, I., Li, Z., Sparks, R., Saad, A. B., Mullen, A.
10.1101/2022.10.31.514182 — Posted: 2025-03-01
Single-cell transcriptomics reveals the impact of sex and age in the healthy human liver
Rahman, R., Epstein, E. T., Murphy, S., Amir-Zilberstein, L., McCabe, C., Delorey, T., Koene, H., Fernandes, L., Tanabe, K. K., Qadan, M., Ferrone, C., Berger, D. L., Shih, A., Deguine, J., Mullen, A.
10.1101/2025.01.27.635138 — Posted: 2025-01-30
Multi-modal refinement of the human heart atlas during the first gestational trimester
De Bono, C., Xu, Y., Kausar, S., Herbane, M., Humbert, C., Rafatov, S., Missirian, C., Moreno, M., Shi, W., Gitton, Y. I., Lombardini, A., Vanzetta, I., Mazaud-Guittot, S., Chedotal, A., Baudot, A., Zaffran, S., Etchevers, H. C.
10.1101/2024.11.21.624698 — Posted: 2025-01-29
An integrated single-cell atlas of the limb skeleton from development through adulthood
Herpelinck, T., Ory, L., Verbraeken, T., Nasello, G., Barzegari, M., Bolander, J., Luyten, F. P., Tylzanowski, P., Geris, L.
10.1101/2022.03.14.484345 — Posted: 2024-09-25
High-parametric protein maps reveal the spatial organization in early-developing human lung
Sariyar, S., Sountoulidis, A., Hansen, J. N., Salas, S. M., Mardamshina, M., Martinez Casals, A., Ballllosera Navarro, F., Andrusivova, Z., Li, X., Czarnewski, P., Lundeberg, J., Linnarsson, S., Nilsson, M., Sundstrom, E., Samakovlis, C., Lundberg, E., Ayoglu, B.
10.1101/2024.01.25.577163 — Posted: 2024-09-13
Integrative Transcriptomics Reveals Layer 1 Astrocytes Altered in Schizophrenia
Leon, J., Yoshinaga, S., Hino, M., Nagaoka, A., Ando, Y., Moody, J., Kojima, M., Kitazawa, A., Hayashi, K., Nakajima, K., Condello, C., Carninci, P., Kunii, Y., Hon, C.-C., Shin, J. W., Kubo, K.-i.
10.1101/2024.06.27.601103 — Posted: 2024-06-28
Quantification of escape from X chromosome inactivation with single-cell omics datasets reveals heterogeneity across cell types and tissues
Tomofuji, Y., Edahiro, R., Shirai, Y., Kock, K. H., Sonehara, K., Wang, Q. S., Namba, S., Moody, J., Ando, Y., Suzuki, A., Yata, T., Ogawa, K., Namkoong, H., Lin, Q. X. X., Buyamin, E. V., Tan, L. M., Sonthalia, R., Han, K. Y., Tanaka, H., Lee, H., Asian Immune Diversity Atlas Network, , Japan COVID-19 Task Force, , The BioBank Japan Project, , Okuno, T., Liu, B., Matsuda, K., Fukunaga, K., Mochizuki, H., Park, W.-Y., Yamamoto, K., Hon, C.-C., Shin, J. W., Prabhakar, S., Kumanogoh, A., Okada, Y.
10.1101/2023.10.14.561800 — Posted: 2024-06-24
Cell type-specific gene expression dynamics during human brain maturation
Steyn, C., Mishi, R., Fillmore, S., Verhoog, M. B., More, J., Rohlwink, U. K., Melvill, R., Butler, J., Enslin, J. M. N., Jacobs, M., Sauka-Spengler, T., Greco, M., Quinones, S., Dulla, C. G., Raimondo, J. V., Figaji, A., Hockman, D.
10.1101/2023.09.29.560114 — Posted: 2024-05-17

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