Channel:  Human Cell Atlas

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

133 Articles

A deep lung cell atlas reveals cytokine-mediated lineage switching of a rare cell progenitor of the human airway epithelium
Waghray, A., Monga, I., Lin, B., Shah, V., Slyper, M., Giotti, B., Xu, J., Waldman, J., Dionne, D., Nguyen, L. T., Lou, W., Cai, P., Park, E., Muus, C., Sun, J., Surve, M. V., Yang, L. C. C., Rozenblatt-Rosen, O., Dolerey, T. M., Saladi, S. V., Tsankov, A. M., Regev, A., Rajagopal, J.
10.1101/2023.11.28.569028 — Posted: 2023-11-29
scSemiProfiler: Advancing Large-scale Single-cell Studiesthrough Semi-profiling with Deep Generative Models andActive Learning
Wang, J., Fonseca, G. J., Ding, J.
10.1101/2023.11.20.567929 — Posted: 2023-11-21
Spatially resolved single-cell atlas of the lung in fatal Covid19 in an African population reveals a distinct cellular signature and an interferon gamma dominated response
Nyirenda, J., Hardy, O., Silva Filho, J. L., Herder, V., Attipa, C., Ndovi, C., Siwombo, M., Namalima, T., Suwedi, L., Nyasulu, W., Ngulube, T., Nyirenda, D., Mvaya, L., Phiri, J., Chasweka, D., Eneya, C., Makwinja, C., Phiri, C., Ziwoya, F., Tembo, A., Makwangwala, K., Khoswe, S., Banda, P., Morton, B., Hilton, O., Lawrence, S., Frere dos Reis, M., Cardoso Melo, G., Vinicious Guimaros de Lecerda, M., Trindande Maranhao Costa, F., Marcelo Monteiro, W., Carlos de Lima Fereirra, L., Johnson, C., Mcguinness, D., Jambo, K., Haley, M. J., Kumwenda, B., Palmarini, M., Barnes, K. G., Denno, D. M., Vo
10.1101/2023.11.16.566964 — Posted: 2023-11-17
Integrated multi-omics single cell atlas of the human retina
Li, J., Wang, J., Ibarra, I. L., Cheng, X., Luecken, M. D., Lu, J., Monavarfeshani, A., Yan, W., Zheng, Y., Zuo, Z., Colborn, S. L. Z., Cortez, B. S., Owen, L. A., Tran, N. M., Shekhar, K., Sanes, J. R., Stout, J. T., Chen, S., Li, Y., DeAngelis, M. M., Theis, F. J., Chen, R.
10.1101/2023.11.07.566105 — Posted: 2023-11-08
Spatial protein and RNA analysis on the same tissue section using MICS technology
Neil, E., Park, D., Hennessey, R. C., DiBiasio, E. C., DiBuono, M., Lafayette, H., Lloyd, E., Lo, H., Femel, J., Makrigiorgos, A., Soliman, S., Mangiardi, D., Praveen, P., Rüberg, S., Staubach, F., Hindman, R., Rothmann, T., Meyer, H., Wantenaar, T., Wang, J., Müller, W., Pinard, R., Bosio, A.
10.1101/2023.10.27.564191 — Posted: 2023-11-07
Oncogenic RAS-Pathway Activation Drives Oncofetal Reprogramming and Creates Therapeutic Vulnerabilities in Juvenile Myelomonocytic Leukemia
Hartmann, M., Schoenung, M., Rajak, J., Maurer, V., Hai, L., Bauer, K., Hakobyan, M., Staeble, S., Langstein, J., Jardine, L., Roelz, R., Bohler, S., Khabirova, E., Maag, A.-H., Vonficht, D., Lebrecht, D., Bernt, K. M., Tan, K., Chen, C., Alikarami, F., Boch, T., Flore, V., Lutsik, P., Milsom, M. D., Raffel, S., Buske, C., Haas, S., Haniffa, M., Mallm, J.-P., Behjati, S., Bonder, M.-J., Froehling, S., Niemeyer, C. M., Hey, J., Flotho, C., Plass, C., Erlacher, M., Schlesner, M., Lipka, D. B.
10.1101/2023.10.27.563754 — Posted: 2023-11-01
Early human fetal lung atlas reveals the temporal dynamics of epithelial cell plasticity.
Quach, H. T., Farrell, S., Kanagarajah, K., Wu, M., Xu, X., Kallurkar, P., Turinsky, A., Bear, C., Ratjen, F., Goyal, S., Moraes, T. J., Wong, A.
10.1101/2023.10.27.564403 — Posted: 2023-10-31
Pan-cancer profiling of tumor-infiltrating natural killer cells through transcriptional reference mapping
Netskar, H. K., Pfefferle, A., Goodridge, J. P., Sohlberg, E., Dufva, O., Teichmann, S., Clancy, T., horowitz, a., Malmberg, K.-J.
10.1101/2023.10.26.564050 — Posted: 2023-10-30
Gene-level alignment of single cell trajectories
Sumanaweera, D., Suo, C., Cujba, A.-M., Muraro, D., Dann, E., Polanski, K., Steemers, A. S., Lee, W., Oliver, A. J., Park, J.-E., Meyer, K. B., Dumitrascu, B., Teichmann, S. A.
10.1101/2023.03.08.531713 — Posted: 2023-10-18
Quantification of the escape from X chromosome inactivation with the million cell-scale human single-cell omics datasets reveals heterogeneity of escape across cell types and tissues
Tomofuji, Y., Edahiro, R., Shirai, Y., Kock, K. H., Sonehara, K., Wang, Q. S., Namba, S., Moody, J., Ando, Y., Suzuki, A., Yata, T., Ogawa, K., Namkoong, H., Lin, Q. X. X., Buyamin, E. V., Tan, L. M., Sonthalia, R., Han, K. Y., Tanaka, H., Lee, H., Asian Immune Diversity Atlas Network, , Japan COVID-19 Task Force, , The BioBank Japan Project, , Okuno, T., Liu, B., Matsuda, K., Fukunaga, K., Mochizuki, H., Park, W.-Y., Yamamoto, K., Hon, C.-C., Shin, J. W., Prabhakar, S., Kumanogoh, A., Okada, Y.
10.1101/2023.10.14.561800 — Posted: 2023-10-18

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