bioRxiv/medRxiv TRiP Review Activity

34 Reviews — Gigabyte — Bioinformatics

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Singe cell RNA sequencing data processing using cloud-based serverless computing
Hung, L.-H., Nasam, N., Lloyd, W., Yeung, K. Y.
10.1101/2025.04.26.650787 — Posted: 2025-04-30 — Discussion: 2026-10-27  Gigabyte
Poly Pipeline: A Polyvalent Spatial Transcriptomics Workflow Validated Across Polyploid and Diploid Organisms
Carvalho, P. C., Millsteed, T., Henry, R. J.
10.64898/2026.08.31.748304 — Posted: 2026-09-04 — Discussion: 2026-10-27  Gigabyte
Bacterial metagenome in plaque, saliva, and tumor samples from individuals with and without OSCC by next-generation sequencing
ERIRA, A., ROBAYO, D. A. G., GAMBOA, F., CHALA, A., MORENO, A., ARREGUI, A. C., MUNOZ, E., NOGUERA, J., TOBAR-TOSSE, F.
10.64898/2026.08.27.747557 — Posted: 2026-08-29 — Discussion: 2026-10-27  Gigabyte
EMImR: a Shiny Application for Identifying Transcriptomic and Epigenomic Changes
Ben Aribi, H., Naitore, C., Ayadi, F., Guerbouj, S., Awe, O. I.
10.1101/2025.10.16.682862 — Posted: 2025-10-17 — Discussion: 2025-11-28  Gigabyte
Chevreul: An R Bioconductor Package for Exploratory Analysis of Full-Length Single Cell Sequencing
Stachelek, K., Bhat, B., Cobrinik, D.
10.1101/2025.05.27.656486 — Posted: 2025-06-01 — Discussion: 2025-07-30  Gigabyte
CompactTree: A lightweight header-only C++ library for ultra-large phylogenetics
Moshiri, N.
10.1101/2024.07.15.603593 — Posted: 2024-07-17 — Discussion: 2025-03-23  Gigabyte
SqueezeCall: Nanopore basecalling using a Squeezeformer network
Zhu, Z.
10.1101/2025.01.21.634194 — Posted: 2025-01-25 — Discussion: 2025-03-15  Gigabyte
NeuroVar: An Open-source Tool for Gene Expression and Variation Data Visualization for Biomarkers of Neurological Diseases
Aribi, H. B., Abassi, N., Awe, O. I.
10.1101/2024.08.21.609056 — Posted: 2024-08-22 — Discussion: 2024-12-26  Gigabyte
NucBalancer: Streamlining Barcode Sequence Selection for Optimal Sample Pooling for Sequencing
Gupta, S., Sharma, A.
10.1101/2024.09.06.611747 — Posted: 2024-09-12 — Discussion: 2024-11-21  Gigabyte
SMARTER-database: a tool to explore genomic diversity in small ruminants
Cozzi, P., Manunza, A., Ramirez-Diaz, J., Tsartsianidou, V., Gkagkavouzis, K., Peraza, P., Johansson, A. M., Arranz, J. J., Freire, F., Kusza, S., Biscarini, F., Peters, L., Tosser-Klopp, G., Ciappesoni, G., Triantafyllidis, A., Rupp, R., Servin, B., Stella, A.
10.1101/2024.09.01.610681 — Posted: 2024-09-03 — Discussion: 2024-11-21  Gigabyte

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