bioRxiv/medRxiv TRiP Review Activity

30 Reviews — Gigabyte — Bioinformatics

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Chevreul: An R Bioconductor Package for Exploratory Analysis of Full-Length Single Cell Sequencing
Stachelek, K., Bhat, B., Cobrinik, D.
10.1101/2025.05.27.656486 — Posted: 2025-06-01 — Discussion: 2025-07-30  Gigabyte
CompactTree: A lightweight header-only C++ library for ultra-large phylogenetics
Moshiri, N.
10.1101/2024.07.15.603593 — Posted: 2024-07-17 — Discussion: 2025-03-23  Gigabyte
SqueezeCall: Nanopore basecalling using a Squeezeformer network
Zhu, Z.
10.1101/2025.01.21.634194 — Posted: 2025-01-25 — Discussion: 2025-03-15  Gigabyte
NeuroVar: An Open-source Tool for Gene Expression and Variation Data Visualization for Biomarkers of Neurological Diseases
Aribi, H. B., Abassi, N., Awe, O. I.
10.1101/2024.08.21.609056 — Posted: 2024-08-22 — Discussion: 2024-12-26  Gigabyte
Chromosome-level genome assembly and annotation of the crested gecko, Correlophus ciliatus, a lizard incapable of tail regeneration
Gumangan, M., Loztio, T., Pan, Z.
10.1101/2024.09.28.615630 — Posted: 2024-09-30 — Discussion: 2024-11-21  Gigabyte
TSTA: Thread and SIMD-Based Trapezoidal Pairwise/Multiple Sequence Alignment Method
Peiyu, Z., Liu, J., Deng, W., Ruan, J.
10.1101/2024.09.18.613655 — Posted: 2024-09-22 — Discussion: 2024-11-21  Gigabyte
NucBalancer: Streamlining Barcode Sequence Selection for Optimal Sample Pooling for Sequencing
Gupta, S., Sharma, A.
10.1101/2024.09.06.611747 — Posted: 2024-09-12 — Discussion: 2024-11-21  Gigabyte
SMARTER-database: a tool to explore genomic diversity in small ruminants
Cozzi, P., Manunza, A., Ramirez-Diaz, J., Tsartsianidou, V., Gkagkavouzis, K., Peraza, P., Johansson, A. M., Arranz, J. J., Freire, F., Kusza, S., Biscarini, F., Peters, L., Tosser-Klopp, G., Ciappesoni, G., Triantafyllidis, A., Rupp, R., Servin, B., Stella, A.
10.1101/2024.09.01.610681 — Posted: 2024-09-03 — Discussion: 2024-11-21  Gigabyte
Building a community-driven bioinformatics platform to facilitate Cannabis sativa multi-omics research
Mansueto, L., Kretzschmar, T., Mauleon, R., King, G. J.
10.1101/2024.10.02.616368 — Posted: 2024-10-03 — Discussion: 2024-10-20  Gigabyte
RiboSnake - a user-friendly, robust, reproducible, multipurpose and documentation-extensive pipeline for 16S rRNA gene microbiome analysis
Doerr, A.-K., Welling, J., Doerr, A., Gosch, J., Moehlen, H., Schmithausen, R., Kehrmann, J., Meyer, F., Kraiselburd, I.
10.1101/2024.08.06.606757 — Posted: 2024-08-08 — Discussion: 2024-09-04  Gigabyte

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