bioRxiv/medRxiv TRiP Review Activity

33 Reviews — Review Commons — Bioinformatics

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TOGGLE identifies fate and function process within a single type of mature cell through single-cell transcriptomics
Chen, J., Jiang, E., Chen, Z., Liu, K., Sun, T., Nong, Y., Kong, Y., Yuan, T., Daga, P., Dai, C. C., Yan, Y., Ge, J., Wu, H., Yang, T., Wang, S., Su, Z., Li, C., Li, Y., Yang, K., Singhal, R. A., Carll, A. P.
10.1101/2025.01.01.631041 — Posted: 2025-01-02 — Discussion: 2026-03-19  Review Commons
The Hok bacterial toxin: diversity, toxicity, distribution and genomic localization
Escalera-Maurer, A., Messineo, A., Renault, T. T., Nicollin, E., Castaneda-Sastre, E., Brunot, M., Berrehail, C., Le Rhun, A.
10.1101/2025.08.07.668861 — Posted: 2025-08-07 — Discussion: 2026-01-26  Review Commons
Interpreting the Effects of DNA Polymerase Variants at the Structural Level
Arnaudi, M., Krzesinska, K., Beltrame, L., Tiberti, M., Nilbert, M., Rohlin, A., Papaleo, E.
10.1101/2025.08.04.653638 — Posted: 2025-08-04 — Discussion: 2026-01-23  Review Commons
Mechanistic genotype-phenotype translation using hierarchical transformers
Lee, I., Wallace, Z., Park, S., Nam, H., Majithia, A., Ideker, T.
10.1101/2024.10.23.619940 — Posted: 2024-10-24 — Discussion: 2026-01-16  Review Commons
Deciphering chromatin architecture and dynamics in Plasmodium falciparum using the nucDetective pipeline
Holzinger, S., Schmutterer, L., Rothe, V. M., Watzlowik, M. T., Schwartz, U., Laengst, G.
10.1101/2025.08.13.670116 — Posted: 2025-08-14 — Discussion: 2025-11-27  Review Commons
MAVISp: Multi-layered Assessment of VarIants by Structure for proteins
Arnaudi, M., Beltrame, L., Degn, K., Utichi, M., Scrima, S., Sackett, P. W., Lambrughi, M., Tiberti, M., Papaleo, E.
10.1101/2022.10.22.513328 — Posted: 2022-10-24 — Discussion: 2025-11-20  Review Commons
ParTIpy: A Scalable Framework for Archetypal Analysis and Pareto Task Inference
Schäfer, P. S. L., Zimmermann, L., Burmedi, P. L., Walfisch, A., Goldenberg, N., Yonassi, S., Tamar, E. S., Adler, M., Tanevski, J., Ramirez Flores, R. O., Saez-Rodriguez, J.
10.1101/2025.09.08.674797 — Posted: 2025-09-13 — Discussion: 2025-11-14  Review Commons
Translational buffering tunes gene expression in mouse and human
Rao, S., Le, A. Y., Persyn, L., Cenik, C.
10.1101/2025.05.16.654561 — Posted: 2025-05-21 — Discussion: 2025-10-10  Review Commons
Studying cis-regulatory heterogeneity in single-cells at allelic resolution
Petrova, V., Niu, M., Vierbuchen, T., Wong, E. S.
10.1101/2025.04.16.649227 — Posted: 2025-04-17 — Discussion: 2025-08-11  Review Commons
Discovery of regulatory motifs associated with human insulator sites reveals the role of directional bias in insulator function
Osato, N., Hamada, M.
10.1101/2024.01.20.573595 — Posted: 2024-01-23 — Discussion: 2025-07-17  Review Commons

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