bioRxiv/medRxiv TRiP Review Activity

36 Reviews — Review Commons — Bioinformatics

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coelsch: Platform-agnostic single-cell analysis of meiotic recombination events
Parker, M. T., Amar, S., Freudigmann, J., Walkemeier, B., Dong, X., Solier, V., Marek, M., Huettel, B., Mercier, R., Schneeberger, K.
10.64898/2026.02.02.701279 — Posted: 2026-02-04 — Discussion: 2026-06-11  Review Commons
Modelling multicellular coordination by bridging cell-cell communication and intracellular regulation through multilayer networks
Trimbour, R., Ramirez Flores, R. O., Saez-Rodriguez, J., Cantini, L.
10.64898/2026.01.20.700561 — Posted: 2026-01-22 — Discussion: 2026-05-27  Review Commons
Sample-level modeling of single-cell data at scale with tinydenseR
Milanez-Almeida, P., Schildknecht, D., Linder, M., Brachmann, S. M., Weiss, A., Adler, F., Lenticchia, S. C., Meistertzheim, M., Wild, S., Cuttat, R., Jayaraman, P., Lee, L. H., Mulvey, T., Hassounah, N., Crafts, G., Quinn, D. S., Orlando, E. J.
10.1101/2025.11.26.690752 — Posted: 2025-11-30 — Discussion: 2026-05-05  Review Commons
TOGGLE identifies fate and function process within a single type of mature cell through single-cell transcriptomics
Chen, J., Jiang, E., Chen, Z., Liu, K., Sun, T., Nong, Y., Kong, Y., Yuan, T., Daga, P., Dai, C. C., Yan, Y., Ge, J., Wu, H., Yang, T., Wang, S., Su, Z., Li, C., Li, Y., Yang, K., Singhal, R. A., Carll, A. P.
10.1101/2025.01.01.631041 — Posted: 2025-01-02 — Discussion: 2026-03-19  Review Commons
The Hok bacterial toxin: diversity, toxicity, distribution and genomic localization
Escalera-Maurer, A., Messineo, A., Renault, T. T., Nicollin, E., Castaneda-Sastre, E., Brunot, M., Berrehail, C., Le Rhun, A.
10.1101/2025.08.07.668861 — Posted: 2025-08-07 — Discussion: 2026-01-26  Review Commons
Interpreting the Effects of DNA Polymerase Variants at the Structural Level
Arnaudi, M., Krzesinska, K., Beltrame, L., Tiberti, M., Nilbert, M., Rohlin, A., Papaleo, E.
10.1101/2025.08.04.653638 — Posted: 2025-08-04 — Discussion: 2026-01-23  Review Commons
Mechanistic genotype-phenotype translation using hierarchical transformers
Lee, I., Wallace, Z., Park, S., Nam, H., Majithia, A., Ideker, T.
10.1101/2024.10.23.619940 — Posted: 2024-10-24 — Discussion: 2026-01-16  Review Commons
Deciphering chromatin architecture and dynamics in Plasmodium falciparum using the nucDetective pipeline
Holzinger, S., Schmutterer, L., Rothe, V. M., Watzlowik, M. T., Schwartz, U., Laengst, G.
10.1101/2025.08.13.670116 — Posted: 2025-08-14 — Discussion: 2025-11-27  Review Commons
MAVISp: Multi-layered Assessment of VarIants by Structure for proteins
Arnaudi, M., Beltrame, L., Degn, K., Utichi, M., Scrima, S., Sackett, P. W., Lambrughi, M., Tiberti, M., Papaleo, E.
10.1101/2022.10.22.513328 — Posted: 2022-10-24 — Discussion: 2025-11-20  Review Commons
ParTIpy: A Scalable Framework for Archetypal Analysis and Pareto Task Inference
Schäfer, P. S. L., Zimmermann, L., Burmedi, P. L., Walfisch, A., Goldenberg, N., Yonassi, S., Tamar, E. S., Adler, M., Tanevski, J., Ramirez Flores, R. O., Saez-Rodriguez, J.
10.1101/2025.09.08.674797 — Posted: 2025-09-13 — Discussion: 2025-11-14  Review Commons

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