bioRxiv/medRxiv TRiP Review Activity

246 Reviews — GigaScience — Bioinformatics

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nf-core/proteinfamilies: A scalable pipeline for the generation of protein families
Karatzas, E., Beracochea, M., Baltoumas, F. A., Aplakidou, E., Richardson, L., Fellows Yates, J. A., Lundin, D., nf-core community, , Buluc, A., Kyrpides, N., Georgakopoulos-Soares, I., Pavlopoulos, G. A., Finn, R. D.
10.1101/2025.08.12.670010 — Posted: 2025-08-16 — Discussion: 2026-01-29  GigaScience
SpaceBF: Spatial coexpression analysis using Bayesian Fused approaches in spatial omics datasets
Seal, S., Neelon, B.
10.1101/2025.03.29.646124 — Posted: 2025-04-03 — Discussion: 2026-01-29  GigaScience
Federated Knowledge Retrieval Elevates Large Language Model Performance on Biomedical Benchmarks
Joy, J., Su, A. I.
10.1101/2025.08.01.668022 — Posted: 2025-08-02 — Discussion: 2026-01-29  GigaScience
Comparative evaluation of computational methods for reconstruction of human viral genomes
Sousa, M. J. P., Toppinen, M., Pyöriä, L., Hedman, K., Sajantila, A., Perdomo, M. F., Pratas, D.
10.1101/2025.01.17.633368 — Posted: 2025-01-22 — Discussion: 2026-01-05  GigaScience
An Integrative Multi-Omics Random Forest Framework for Robust Biomarker Discovery
Zhang, W., Huang, H., Wang, L., Brian, L. D., Chen, S. X.
10.1101/2025.03.05.641533 — Posted: 2025-03-06 — Discussion: 2026-01-05  GigaScience
pyRootHair: Machine Learning Accelerated Software for High-Throughput Phenotyping of Plant Root Hair Traits
Tsang, I., Percival-Alwyn, L., Rawsthorne, S., Cockram, J., Leigh, F., Atkinson, J.
10.1101/2025.07.14.664697 — Posted: 2025-07-18 — Discussion: 2025-11-28  GigaScience
Improving the Reliability and Quality of Nextflow Pipelines with nf-test
Forer, L., Schoenherr, S.
10.1101/2024.05.25.595877 — Posted: 2024-05-30 — Discussion: 2025-10-30  GigaScience
GFFx: A Rust-based suite of utilities for ultra-fast genomic feature extraction
Chen, B., Dongya, W., Zhang, G.
10.1101/2025.08.08.669426 — Posted: 2025-08-12 — Discussion: 2025-10-30  GigaScience
Reproducible processing of TCGA regulatory networks
Fanfani, V., Shutta, K. H., Mandros, P., Fischer, J., Saha, E., Micheletti, S., Chen, C., Ben Guebila, M., Lopes-Ramos, C. M., Quackenbush, J.
10.1101/2024.11.05.622163 — Posted: 2024-11-07 — Discussion: 2025-10-30  GigaScience
EssSubgraph improves performance and generalizability of mammalian essential gene prediction with large networks
wen, h., Carpenter, S., McGinnis, K., Nelson, A., Smith, K., hong, t.
10.1101/2025.07.21.665218 — Posted: 2025-07-25 — Discussion: 2025-10-30  GigaScience

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