Channel: NCI Cancer Systems Biology Consortium

10 Articles

West, J., Desai, B., Strobl, M., Pierik, L., Vander Velde, R., Armagost, C., Miles, R., Robertson-Tessi, M., Marusyk, A., Anderson, A. R. A.

10.1101/2020.10.08.331678 — Posted: 2021-11-30

A community-based approach to image analysis of cells, tissues and tumors

CSBC/PS-ON Image Analysis Working Group, , Vizcarra, J. C., Burlingame, E. A., Hug, C. B., Goltsev, Y., White, B. S., Tyson, D. R., Sokolov, A.

10.1101/2021.07.22.451363 — Posted: 2021-07-25

DDN2.0: R and Python packages for differential dependency network analysis of biological systems

Zhang, B., Fu, Y., Lu, Y., Zhang, Z., Clarke, R., Van Eyk, J. E., Herrington, D. M., Wang, Y.

10.1101/2021.04.10.439301 — Posted: 2021-04-19

Reconstruction of Contemporary Human Stem Cell Dynamics with Oscillatory Molecular Clocks

Gabbutt, C., Schenck, R. O., Weisenberger, D., Kimberley, C., Berner, A., Househam, J., Lakatos, E., Robertson-Tessi, M., Martin, I., Patel, R., Clark, S., Latchford, A., Barnes, C. P., Leedham, S. J., Anderson, A. R., Graham, T. A., Shibata, D.

10.1101/2021.03.15.435426 — Posted: 2021-03-16

Cancer Hallmarks Define a Continuum of Plastic Cell States between Small Cell Lung Cancer Archetypes

Groves, S. M., Ireland, A., Liu, Q., Simmons, A. J., Lau, K., Iams, W. T., Tyson, D. R., Lovly, C., Oliver, T. G., Quaranta, V.

10.1101/2021.01.22.427865 — Posted: 2021-01-24

A unified atlas of CD8 T cell dysfunctional states in cancer and infection

Pritykin, Y., van der Veeken, J., Pine, A., Zhong, Y., Sahin, M., Mazutis, L., Pe'er, D., Rudensky, A., Leslie, C. S.

10.1101/2020.07.25.220673 — Posted: 2020-07-26

EvoFreq: Visualization of the Evolutionary Frequencies of Sequence and Model Data

Gatenbee, C. D., Schenck, R. O., Bravo, R. R., Anderson, A. R. A.

10.1101/743815 — Posted: 2019-08-22

The dynamic tumor ecosystem: how cell turnover and trade-offs affect cancer evolution

Gallaher, J., Brown, J., Anderson, A. R. A.

10.1101/270900 — Posted: 2018-02-26

Spatial heterogeneity and evolutionary dynamics modulate time to recurrence in continuous and adaptive cancer therapies

Gallaher, J. A., Enriquez-Navas, P. M., Luddy, K. A., Gatenby, R. A., Anderson, A. R. A.

10.1101/128959 — Posted: 2017-09-08

Hybrid approach for parameter estimation in agent-based models

Gallaher, J., Hawkins-Daarud, A., Massey, S. C., Swanson, K., Anderson, A.

10.1101/175661 — Posted: 2017-08-13

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