bioRxiv/medRxiv TRiP Review Activity

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

259 TRiP Reviews — GigaScience — All Subjects

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Bias invariant RNA-seq metadata annotation
Wartmann, H., Heins, S., Kloiber, K., Bonn, S.
10.1101/2020.11.26.399568 — Posted: 2020-11-27 — Discussion: 2022-02-06  GigaScience
Distinguish virulent and temperate phage-derived sequences in metavirome data with a deep learning approach
Wu, S., Fang, Z., Tan, J., Li, M., Wang, C., Guo, Q., Xu, C., Jiang, X., Zhu, H.
10.1101/2020.12.25.424404 — Posted: 2020-12-26 — Discussion: 2022-02-06  GigaScience
Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment
Fu, Y., Mahmoud, M., Muraliraman, V. V., Sedlazeck, F. J., Treangen, T. J.
10.1101/2021.05.29.446291 — Posted: 2021-05-30 — Discussion: 2022-02-06  GigaScience
SwiftOrtho: a Fast, Memory-Efficient, Multiple Genome Orthology Classifier
Hu, X., Friedberg, I.
10.1101/543223 — Posted: 2019-02-08 — Discussion: 2022-02-06  GigaScience
IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis
Chen, Y.-C., Suresh, A., Underbayev, C., Sun, C., Singh, K., Seifuddin, F., Wiestner, A., Pirooznia, M.
10.1101/596817 — Posted: 2019-04-03 — Discussion: 2022-02-06  GigaScience
Meta-Research: Citation needed? Wikipedia and the COVID-19 pandemic
Benjakob, O., Aviram, R., Sobel, J. A.
10.1101/2021.03.01.433379 — Posted: 2021-03-01 — Discussion: 2022-02-02  GigaScience
Managing The Analysis Of High-Throughput Sequencing Data
Quilez, J., Vidal, E., Le Dily, F., Serra, F., Cuartero, Y., Stadhouders, R., Filion, G., Graf, T., Marti-Renom, M. A., Beato, M.
10.1101/136358 — Posted: 2017-05-10 — Discussion: 2022-01-31  GigaScience
Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large scale genetic studies
Atkinson, J. A., Lobet, G., Noll, M., Meyer, P. E., Griffiths, M., Wells, D. M.
10.1101/152702 — Posted: 2017-06-20 — Discussion: 2022-01-31  GigaScience
Machado: open source genomics data integration framework
Mudadu, M. d. A., Zerlotini, A.
10.1101/2020.05.08.084731 — Posted: 2020-05-10 — Discussion: 2022-01-31  GigaScience
ascend: R package for analysis of single cell RNA-seq data
Senabouth, A., Lukowski, S., Alquicira, J., Andersen, S., Mei, X., Nguyen, Q., Powell, J.
10.1101/207704 — Posted: 2017-10-23 — Discussion: 2022-01-31  GigaScience

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