Channel:  4D Nucleome

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

436 Articles

Long range regulation of transcription scales with genomic distance in a gene specific manner
Jensen, C. L., Chen, L.-F., Swigut, T., Crocker, O. J., Yao, D., Bassik, M. C., Ferrell, J., Boettiger, A., Wysocka, J.
10.1101/2024.07.19.604327 — Posted: 2024-07-19
Vcam1+ Fibro-adipogenic Progenitors Mark Fatty Infiltration in Chronic Limb Threatening Ischemia
Dai, Q., Wan, C., Xu, Y., Fei, K., Olivere, L. A., Garrett, B., Akers, L., Peters, D., Otto, J. C., Kontos, C. D., Ji, Z., Diao, Y., Southerland, K. W.
10.1101/2024.07.08.602430 — Posted: 2024-07-11
Efficient Genome Editing with Chimeric Oligonucleotide-Directed Editing
Nguyen, L. T., Rakestraw, N. R., Pizzano, B. L. M., Young, C. B., Huang, Y., Beerensson, K. T., Fang, A., Antal, S. G., Anamiss, K. V., Peggs, C. M. D., Yan, J., Jing, Y., Burdine, R. D., Adamson, B., Toettcher, J. E., Myhrvold, C., Jain, P. K.
10.1101/2024.07.09.602710 — Posted: 2024-07-10
Spatial transcriptomics reveals influence of microenvironment on intrinsic fates in melanoma therapy resistance
Boe, R. H., Triandafillou, C. G., Lazcano, R., Wargo, J. A., Raj, A.
10.1101/2024.06.30.601416 — Posted: 2024-07-02
CRISPR Screening Uncovers a Long-Range Enhancer for ONECUT1 in Pancreatic Differentiation and Links a Diabetes Risk Variant
Kaplan, S. J., Wong, W., Yan, J., Pulecio, J., Cho, H., Leslie-Iyer, J., Kazakov, J., Zhao, J., Li, Q., Murphy, D., Luo, R., Dey, K. K., Apostolou, E., Lesie, C. S., Huangfu, D.
10.1101/2024.04.26.591412 — Posted: 2024-06-28
FISHnet: Detecting chromatin domains in single-cell sequential Oligopaints imaging data
Patel, R., Pham, K., Chandrashekar, H., Phillips-Cremins, J. E.
10.1101/2024.06.18.599627 — Posted: 2024-06-18
HLH-30/TFEB rewires the chaperone network to promote proteostasis under conditions of Coenzyme A and Iron-Sulfur Cluster Deficiency
Shalash, R., Levi-Ferber, M., von Chrzanowski, H., Atrash, M. K., Shav-Tal, Y., Henis-Korenblit, S.
10.1101/2024.06.05.597553 — Posted: 2024-06-06
Improved cohesin HiChIP protocol and bioinformatic analysis for robust detection of chromatin loops and stripes
Jodkowska, K., Parteka-Tojek, Z., Agarwal, A., Denkiewicz, M., Korsak, S., Chilinski, M., Banecki, K., Plewczynski, D.
10.1101/2024.05.16.594268 — Posted: 2024-05-20
Super-enhancer interactomes from single cells link clustering and transcription
Le, D., Hafner, A., Gaddam, S., Wang, K., Boettiger, A. N.
10.1101/2024.05.08.593251 — Posted: 2024-05-10
MASTR-seq: Multiplexed Analysis of Short Tandem Repeats with sequencing
Chandradoss, K. R., Su, C., Malachowski, T., Boya, R., Ryu, H.-S., Brennand, K., Phillips-Cremins, J. E.
10.1101/2024.04.29.591790 — Posted: 2024-05-02

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