Channel: University of California, San Francisco

This collection includes bioRxiv and medRxiv papers from authors at University of California, San Francisco.

2574 Articles

Transcription Factor (TF) validation using Dam-IT simultaneously captures genome-wide TF-DNA binding, direct gene regulation, and chromatin accessibility in plant cells

Hinckley, W. E., Jack, A., Li, A., Frangos, S., Pasquino, A., Huang, S.-s. C., Coruzzi, G. M.

10.1101/2025.05.06.652526 — Posted: 2025-05-11

UNCOVERseq Enables Sensitive and Controlled Gene Editing Off-Target Nomination Across CRISPR-Cas Modalities and Systems

Kinney, K. J., Jia, K., Zhang, H., Schmaljohn, E., Osborne, T., Thommandru, B., Murugan, K., Sanchez-Pena, A., West, S., Chen, S., Codipilly, R., Sturgeon, M., Turk, R., McNeill, M., Behlke, M., Jacobi, A. M., Cromer, K., Kurgan, G.

10.1101/2025.05.09.653165 — Posted: 2025-05-11

Importance of confirmatory test characteristics in optimizing community-based screening for tuberculosis: An epidemiological modeling analysis

Bruemmer, L. E., Ryckman, T. S., Shrestha, S., Marx, F. M., Christopher, D. J., Theron, G., Cattamanchi, A., Denkinger, C. M., Dowdy, D. W., Kendall, E. A.

10.1101/2025.05.09.25327330 — Posted: 2025-05-11

Separable global and local beta burst dynamics in motor cortex of primates

Khanna, P., farrokhi, b., Choi, H., Griffin, S., Heimbuch, I., Novik, L., Thiesen, K., Morrison, J. H., Morecraft, R., Ganguly, K.

10.1101/2025.05.05.652217 — Posted: 2025-05-10

Mesolimbic dopamine ramps reflect environmental timescales

Floeder, J. R., Jeong, H., Mohebi, A., K Namboodiri, V. M.

10.1101/2024.03.27.587103 — Posted: 2025-05-09

BRAFV600E-Driven Lung Tumorigenesis Requires Ligand-Mediated Activation of ERBB Receptor Signaling

Dacheux, M., Wu, M.-J., Scherzer, M. T., Nillson, M., Murphy, B., Schuman, S., Ju, Z., Bivona, T., Lito, P., Gumbleton, M., Puri, S., Akerley, W., Wang, J., Wang, K., Heymach, J. V., Kinsey, C. G., Negrao, M. V., McMahon, M., Vaishnavi, A.

10.1101/2025.05.04.652129 — Posted: 2025-05-09

Genome Dynamics and Chromosome Structural Variations in Histoplasma ohiense, a fungal pathogen of humans

Heater, S., Voorhies, M., Sil, A.

10.1101/2025.05.05.652209 — Posted: 2025-05-09

Indirect Benefits of Seasonal Malaria Chemoprevention for Non-Malarial Pediatric Infections and Routine Antibiotic Use in Real-World Programmatic Settings: A Pre-Post Study Using Positive and Negative Controls

Gebreegziabher, E., Ouattara, M., Bountogo, M., Coulibaly, B., Boudo, V., Ouedraogo, T., Lebas, E., Hu, H., O'Brien, K., Hsiang, M. S., Glidden, D. V., Arnold, B. F., Lietman, T. M., Sie, A., Oldenburg, C.

10.1101/2025.05.08.25327228 — Posted: 2025-05-09

The phosphatases TCPTP, PTPN22, and SHP1 play unique roles in T cell phosphotyrosine maintenance and feedback regulation of the TCR

Callahan, A., Mojumdar, A., Hu, M., Wang, A., Griffith, A., Huang, N., Chua, X. Y., Mroz, N. M., Puterbaugh, R. Z., Reilly, S. P., Salomon, A. R.

10.1101/2025.05.05.652301 — Posted: 2025-05-09

Associations between floor material and E. coli contamination in rural Bangladeshi households

Tazin, S., Islam, M., Pickering, A. J., Kwong, L. H., Mertens, A., Niven, C., Arnold, B. F., Hubbard, A. E., Alam, M., Sen, D., Islam, S., Rahman, M., Unicomb, L., Luby, S. P., Benjamin-Chung, J., Ercumen, A.

10.1101/2025.05.07.652756 — Posted: 2025-05-08

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