bioRxiv/medRxiv TRiP Review Activity

138 Reviews — eLife — Bioinformatics

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Establishing benchmarks for quantitative mapping of m6A by Nanopore Direct RNA Sequencing
Ohnezeit, D., Loliashvili, E., Putzel, G., Verstraten, R., Liu, J., Nicholson, L. S., Pironti, A., Jaffrey, S. R., Depledge, D. P., Wilson, A. C.
10.1101/2025.11.02.686099 — Posted: 2025-11-02 — Discussion: 2026-10-29  eLife
Penumbria: Advanced 3D cell segmentation for biomedical imaging
Stockert, L., Donovan, J., Baier, H.
10.64898/2026.06.30.735527 — Posted: 2026-07-01 — Discussion: 2026-10-12  eLife
Large scale loss-of-function mutations during chicken evolution and domestication
Wu, S., Wang, K., Ge, X., Dou, T., Yuan, S., Yan, S., Xu, Z., Liu, Y., Jian, Z., Zhao, J., Zhao, R., Zi, X., Gu, D., Liu, L., Li, Q., Wu, D.-D., Jia, J., Ge, C., Su, Z.
10.1101/2024.05.21.595210 — Posted: 2024-05-22 — Discussion: 2026-10-06  eLife
ProteinConformers: large-scale and energetically profiled descriptions of protein conformational landscapes
Zhou, Y., Wei, C., Sun, M., Wang, L., Song, J., Xu, F., Li, Y., Zheng, W., Zhang, Y.
10.64898/2026.02.20.707011 — Posted: 2026-02-20 — Discussion: 2026-09-15  eLife
The structural context of mutations in proteins predicts their effect on antibiotic resistance
Green, A. G., Tasmin, M., Vargas, R., Farhat, M. R.
10.1101/2025.09.23.676583 — Posted: 2025-09-25 — Discussion: 2026-09-01  eLife
Systematic cross-study assessment of RNA-Seq experimental workflows for plasma cell-free transcriptome profiling
Tuni, C., Asole, G., Monteagudo-Mesas, P., Rusu, E. C., Cabus, L., Gonzalez, L., Sanchez, L., Neto, B., Sanders, P., Weber, M., Lagarde, J.
10.1101/2025.07.10.664092 — Posted: 2025-07-14 — Discussion: 2026-08-27  eLife
Product-stabilized filamentation by human glutamine synthetase allosterically tunes metabolic activity
Greene, E., Muniz, R., Yamamura, H., Hoff, S. E., Bajaj, P., Lee, D. J., Thompson, E. M., Arada, A., Lee, G. M., Bonomi, M., Kollman, J. M., Fraser, J. S.
10.1101/2025.07.04.663231 — Posted: 2025-07-06 — Discussion: 2026-07-28  eLife
Testing nonparametrically for dependence between nonstationary time series with very few replicates
Yuan, A. E., Shou, W.
10.1101/2023.03.13.531689 — Posted: 2023-03-14 — Discussion: 2026-07-24  eLife
TSvelo: Comprehensive RNA velocity inference by jointly modeling Transcription and Splicing
Li, J., Wang, Z., Shen, H.-B., Yuan, Y.
10.1101/2024.12.24.630058 — Posted: 2024-12-24 — Discussion: 2026-07-24  eLife
Petabase-scale Papillomavirus Discovery
Shen, J., Chikhi, R., Korobeynikov, A., Babaian, A.
10.64898/2026.04.21.719858 — Posted: 2026-04-22 — Discussion: 2026-07-16  eLife

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