bioRxiv/medRxiv TRiP Review Activity

128 Reviews — eLife — Bioinformatics

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Leveraging Disease Association Degree for High-Accuracy MicroRNA Target Prediction
Chen, B.
10.1101/2025.11.06.686936 — Posted: 2025-11-11 — Discussion: 2026-02-09  eLife
Investigating the native functions of -carbon monoxide dehydrogenase through genomic context analysis
Land, H., Böhm, M.
10.1101/2025.09.14.676152 — Posted: 2025-09-19 — Discussion: 2025-12-31  eLife
Squidly: Enzyme Catalytic Residue Prediction Harnessing a Biology-Informed Contrastive Learning Framework
Rieger, W. J., Boden, M., Arnold, F. H., Mora, A.
10.1101/2025.06.13.659624 — Posted: 2025-06-20 — Discussion: 2025-12-30  eLife
Generative modeling for RNA splicing predictions and design
Wu, D., Maus, N., Jha, A., Yang, K., Wales-McGrath, B. D., Jewell, S., Tangiyan, A., Choi, P., Gardner, J. R., Barash, Y.
10.1101/2025.01.20.633986 — Posted: 2025-01-24 — Discussion: 2025-12-29  eLife
A network regularized linear model to infer spatial expression pattern for single cell
Gu, C., Chen, H., Liu, Z.
10.1101/2024.11.20.624541 — Posted: 2024-11-22 — Discussion: 2025-12-16  eLife
The structural context of mutations in proteins predicts their effect on antibiotic resistance
Green, A. G., Tasmin, M., Vargas, R., Farhat, M. R.
10.1101/2025.09.23.676583 — Posted: 2025-09-25 — Discussion: 2025-12-12  eLife
TSvelo: Comprehensive RNA velocity inference by jointly modeling Transcription and Splicing
Li, J., Wang, Z., Shen, H.-B., Yuan, Y.
10.1101/2024.12.24.630058 — Posted: 2024-12-24 — Discussion: 2025-11-24  eLife
Identification and classification of ion-channels across the tree of life: Insights into understudied CALHM channels
Taujale, R., Park, S. J., Gravel, N., Soleymani, S., Carter, R., Boyd, K., Keuning, S., Ruan, Z., Lü, W., Kannan, N.
10.1101/2025.02.10.637530 — Posted: 2025-02-18 — Discussion: 2025-11-17  eLife
Raw signal segmentation for estimating RNA modifications and structures from Nanopore direct RNA sequencing data
Cheng, G., Vehtari, A., Cheng, L.
10.1101/2024.01.11.575207 — Posted: 2024-01-11 — Discussion: 2025-11-07  eLife
MorphoNet 2.0: An innovative approach for qualitative assessment and segmentation curation of large-scale 3D time-lapse imaging datasets
Gallean, B., Laurent, T., Biasuz, K., Clement, A., Faraj, N., Lemaire, P., Faure, E.
10.1101/2025.02.21.639560 — Posted: 2025-03-01 — Discussion: 2025-11-04  eLife

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