bioRxiv/medRxiv TRiP Review Activity

306 Reviews — GigaScience — All Subjects

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A Galaxy-based training resource for single-cell RNA-seq quality control and analyses.
Etherington, G. J., Soranzo, N., Mohammed, S., Haerty, W., Davey, R., Di-Palma, F.
10.1101/724047 — Posted: 2019-08-04 — Discussion: 2022-03-14  GigaScience
DENTIST - using long reads to close assembly gaps at high accuracy
Ludwig, A., Pippel, M., Myers, G., Hiller, M.
10.1101/2021.02.26.432990 — Posted: 2021-02-27 — Discussion: 2022-03-09  GigaScience
Sim3C: Simulation Of HiC And Meta3C Proximity Ligation Sequencing Technologies
DeMaere, M. Z., Darling, A. E.
10.1101/134452 — Posted: 2017-05-15 — Discussion: 2022-02-20  GigaScience
Conventional and hyperspectral time-series imagingof maize lines widely used in field trials
Liang, Z., Pandey, P., Stoerger, V., Xu, Y., Qiu, Y., Ge, Y., Schnable, J. C.
10.1101/169045 — Posted: 2017-07-28 — Discussion: 2022-02-20  GigaScience
CAMITAX: Taxon labels for microbial genomes
Bremges, A., Fritz, A., McHardy, A. C.
10.1101/532473 — Posted: 2019-01-29 — Discussion: 2022-02-10  GigaScience
FASTQuick: Rapid and comprehensive quality assessment of raw sequence reads
Zhang, F., Kang, H. M.
10.1101/2020.06.10.143768 — Posted: 2020-06-11 — Discussion: 2022-02-06  GigaScience
Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design
Weber, L. M., Hippen, A. A., Hickey, P. F., Berrett, K. C., Gertz, J., Doherty, J. A., Greene, C. S., Hicks, S. C.
10.1101/2020.11.06.371963 — Posted: 2020-11-07 — Discussion: 2022-02-06  GigaScience
Bias invariant RNA-seq metadata annotation
Wartmann, H., Heins, S., Kloiber, K., Bonn, S.
10.1101/2020.11.26.399568 — Posted: 2020-11-27 — Discussion: 2022-02-06  GigaScience
Distinguish virulent and temperate phage-derived sequences in metavirome data with a deep learning approach
Wu, S., Fang, Z., Tan, J., Li, M., Wang, C., Guo, Q., Xu, C., Jiang, X., Zhu, H.
10.1101/2020.12.25.424404 — Posted: 2020-12-26 — Discussion: 2022-02-06  GigaScience
Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment
Fu, Y., Mahmoud, M., Muraliraman, V. V., Sedlazeck, F. J., Treangen, T. J.
10.1101/2021.05.29.446291 — Posted: 2021-05-30 — Discussion: 2022-02-06  GigaScience

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