bioRxiv/medRxiv TRiP Review Activity

246 Reviews — GigaScience — Bioinformatics

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MOBFinder: a tool for MOB typing for plasmid metagenomic fragments based on language model
Feng, T., Wu, S., Zhou, H., Fang, Z.
10.1101/2023.12.06.570414 — Posted: 2023-12-07 — Discussion: 2024-08-12  GigaScience
Impact of reference design on estimating SARS-CoV-2 lineage abundances from wastewater sequencing data
Assmann, E., Agrawal, S., Orschler, L., Böttcher, S., Lackner, S., Hölzer, M.
10.1101/2023.06.02.543047 — Posted: 2023-06-02 — Discussion: 2024-08-12  GigaScience
Deciphering Cancer Genomes with GenomeSpy: A Grammar-Based Visualization Toolkit
Lavikka, K., Oikkonen, J., Li, Y., Muranen, T., Micoli, G., Marchi, G., Lahtinen, A., Huhtinen, K., Lehtonen, R., Hietanen, S., Hynninen, J., Virtanen, A., Hautaniemi, S.
10.1101/2023.10.06.561159 — Posted: 2023-10-06 — Discussion: 2024-08-12  GigaScience
gNOMO2: a comprehensive and modular pipeline for integrated multi-omics analyses of microbiomes
Arıkan, M., Muth, T.
10.1101/2023.12.03.569767 — Posted: 2023-12-05 — Discussion: 2024-07-31  GigaScience
Robust clustering of transcriptomes through multiple testing
Kariotis, S., Tan, P. F., Lu, H., Rhodes, C. J., Wilkins, M. R., Lawrie, A., Wang, D.
10.1101/2022.12.19.519427 — Posted: 2022-12-20 — Discussion: 2024-07-31  GigaScience
PEPhub: a database, web interface, and API for editing, sharing, and validating biological sample metadata
LeRoy, N. J., Khoroshevskyi, O., O'Brien, A., Stepien, R., Arslan, A., Sheffield, N. C.
10.1101/2023.08.15.551388 — Posted: 2023-08-18 — Discussion: 2024-07-31  GigaScience
Hecatomb: An End-to-End Research Platform for Viral Metagenomics
Roach, M. J., Beecroft, S., Mihindukulasuriya, K., Wang, L., Lima, L. F. O., Dinsdale, E. A., Edwards, R., Handley, S. A.
10.1101/2022.05.15.492003 — Posted: 2022-05-16 — Discussion: 2024-07-01  GigaScience
LRTK: A unified and versatile toolkit for analyzing linked-read sequencing data
Yang, C., Zhang, Z., Liao, H., Zhang, L.
10.1101/2022.08.10.503458 — Posted: 2022-08-13 — Discussion: 2024-07-01  GigaScience
ntsm: an alignment-free, ultra low coverage, sequencing technology agnostic, intraspecies sample comparison tool for sample swap detection
Chu, J., Rong, J., Feng, X., Li, H.
10.1101/2023.11.01.565041 — Posted: 2023-11-03 — Discussion: 2024-07-01  GigaScience
IPEV: Identification of Prokaryotic and Ekaryotic Vrus-derived sequences in virome using deep learning
Yin, H., Wu, S., Tan, J., Guo, Q., Li, M., Jiang, X., Zhu, H.
10.1101/2023.05.28.541705 — Posted: 2023-05-30 — Discussion: 2024-05-13  GigaScience

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