bioRxiv/medRxiv TRiP Review Activity

264 Reviews — GigaScience — Bioinformatics

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RWRtoolkit: multi-omic network analysis using random walks on multiplex networks in any species
Kainer, D., Lane, M., Sullivan, K. A., Miller, J. I., Cashman, M., Morgan, M., Cliff, A., Romero, J., Walker, A., Blair, D. D., Chhetri, H., Wang, Y., Pavicic, M., Furches, A., Noshay, J., Drake, M., Landry, N., Ireland, A., Missaoui, A., Kang, Y., Sedbrook, J., Dehal, P., Canon, S., Jacobson, D. A.
10.1101/2024.07.17.603975 — Posted: 2024-07-19 — Discussion: 2025-05-06  GigaScience
Defining the limits of plant chemical space: challenges and estimations
Hart, C. E., Gadiya, Y., Kind, T., Krettler, C. A., Gaetz, M., Misra, B. B., Healey, D., Allen, A., Colluru, V., Domingo-Fernandez, D.
10.1101/2025.01.08.631938 — Posted: 2025-01-13 — Discussion: 2025-05-06  GigaScience
Network-based anomaly detection algorithm reveals proteins with major roles in human tissues
Kagan, D., Jubran, J., Yeger-Lotem, E., Fire, M.
10.1101/2023.12.19.572354 — Posted: 2023-12-20 — Discussion: 2025-04-28  GigaScience
Healthy microbiome - moving towards functional interpretation
Zielinska, K., Rudnicki, W., Kosciolek, T., Labaj, P. P.
10.1101/2023.12.04.569909 — Posted: 2023-12-05 — Discussion: 2025-04-03  GigaScience
Genomic and transcriptomic analyses of Heteropoda venatoria reveal the expansion of P450 family for starvation resistance in spider
Zhang, G., Wang, Y., Jiang, H., Wang, Y.
10.1101/2024.07.31.605936 — Posted: 2024-07-31 — Discussion: 2025-04-03  GigaScience
TransHLA: A Hybrid Transformer Model for HLA-Presented Epitope Detection
LU, T., Wang, X., Nie, W., Huo, M., Li, S.
10.1101/2025.01.20.634002 — Posted: 2025-01-24 — Discussion: 2025-03-03  GigaScience
xRead: a coverage-guided approach for scalable construction of read overlapping graph
Kong, T., Liu, B., Wang, Y.
10.1101/2023.05.23.541864 — Posted: 2023-05-24 — Discussion: 2025-03-03  GigaScience
Knowledge Graph-based Thought: a knowledge graph enhanced LLMs framework for pan-cancer question answering
Feng, Y., Zhou, L., Zheng, Y., He, R., Ma, C., Li, Y.
10.1101/2024.04.17.589873 — Posted: 2024-04-20 — Discussion: 2025-02-04  GigaScience
PlasGO: enhancing GO-based function prediction for plasmid-encoded proteins based on genetic structure
Ji, Y., Shang, J., Guan, J., Zou, W., Liao, H., Tang, X., Sun, Y.
10.1101/2024.07.03.602011 — Posted: 2024-07-06 — Discussion: 2025-01-05  GigaScience
CAT Bridge: an efficient toolkit for compound-transcript association mining from multi-omics data
Yang, B., Meng, T., Wang, X., Li, J., Zhao, S., Wang, Y., Yi, S., Zhou, Y., Zhang, Y., Li, L., Guo, L.
10.1101/2024.01.21.576587 — Posted: 2024-01-24 — Discussion: 2024-12-05  GigaScience

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