bioRxiv/medRxiv TRiP Review Activity

234 Reviews — GigaScience — Bioinformatics

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Comparison of computational methods for host removal and classification of mycobacteria from clinical metagenomic data
Hall, M. B., Coin, L. J. M.
10.1101/2023.09.18.558339 — Posted: 2023-09-19 — Discussion: 2024-05-13  GigaScience
Improved integration of single cell transcriptome data demonstrated on heart failure in mice and men
Jurado, M. R., Tombor, L. S., Arsalan, M., Holubec, T., Emrich, F., Walther, T., Zeiher, A. M., Schulz, M. H., Dimmeler, S., John, D.
10.1101/2023.03.15.532742 — Posted: 2023-03-15 — Discussion: 2024-05-12  GigaScience
The probability of edge existence due to node degree: a baseline for network-based predictions
Zietz, M., Himmelstein, D. S., Kloster, K., Williams, C., Nagle, M. W., Greene, C. S.
10.1101/2023.01.05.522939 — Posted: 2023-01-06 — Discussion: 2024-03-04  GigaScience
A Multi-omics Data Analysis Workflow Packaged as a FAIR Digital Object
Niehues, A., de Visser, C., Hagenbeek, F. A., Kulkarni, P., Pool, R., Karu, N., Kindt, A. S. D., Singh, G., Vermeiren, R. R. J. M., Boomsma, D. I., van Dongen, J., 't Hoen, P. A. C., van Gool, A. J.
10.1101/2023.06.07.543986 — Posted: 2023-06-09 — Discussion: 2024-02-11  GigaScience
Machine Learning Made Easy (MLme): A Comprehensive Toolkit for Machine Learning-Driven Data Analysis
Akshay, A., Katoch, M., Shekarchizadeh, N., Abedi, M., Sharma, A., C. Burkhard, F., M. Adam, R., Monastyrskaia, K., Hashemi Gheinani, A.
10.1101/2023.07.04.546825 — Posted: 2023-07-04 — Discussion: 2024-02-11  GigaScience
Vulture: Cloud-enabled scalable mining of microbial reads in public scRNA-seq data
Chen, J., Yin, D., Wong, H. Y. H., Duan, X., Yu, K. H. O., Ho, J. W. K.
10.1101/2023.02.13.528411 — Posted: 2023-02-15 — Discussion: 2024-02-11  GigaScience
Variance Analysis of LC-MS Experimental Factors and Their Impact on Machine Learning
Rehfeldt, T. G., Krawczyk, K., Echers, S. G., Marcatili, P., Palczynski, P., Roettger, R., Schwaemmle, V.
10.1101/2023.05.01.538996 — Posted: 2023-05-02 — Discussion: 2024-01-02  GigaScience
When do longer reads matter? A benchmark of long read de novo assembly tools for eukaryotic genomes
Cosma, B. M., Shirali Hossein Zade, R., Jordan, E. N., van Lent, P., Peng, C., Pillay, S., Abeel, T.
10.1101/2023.01.30.526229 — Posted: 2023-02-02 — Discussion: 2024-01-02  GigaScience
Computational prediction of human deep intronic variation
Barbosa, P., Savisaar, R., Carmo-Fonseca, M., Fonseca, A.
10.1101/2023.02.17.528928 — Posted: 2023-02-17 — Discussion: 2023-11-13  GigaScience
Developing best practices for genotyping-by-sequencing analysis using linkage maps as benchmarks
Taniguti, C. H., Taniguti, L. M., Amadeu, R. R., Mollinari, M., Pereira, G. d. S., Riera-Lizarazu, O., Lau, J., Byrne, D., Gesteira, G. d. S., Oliveira, T. d. P., Ferreira, G. C., Garcia, A. A. F.
10.1101/2022.11.24.517847 — Posted: 2022-11-25 — Discussion: 2023-11-13  GigaScience

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