Channel:  Impact of Genomic Variation on Function (IGVF)

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

46 Articles

A machine-readable specification for genomics assays
Booeshaghi, A. S., Chen, X., Pachter, L.
10.1101/2023.03.17.533215 — Posted: 2023-03-21
Dynamic network-guided CRISPRi screen reveals CTCF loop-constrained nonlinear enhancer-gene regulatory activity in cell state transitions
Luo, R., Yan, J., Oh, J. W., Xi, W., Shigaki, D., Wong, W., Cho, H., Murphy, D., Cutler, R., Rosen, B. P., Pulecio, J., Yang, D., Glenn, R., Chen, T., Li, Q. V., Vierbuchen, T., Sidoli, S., Apostolou, E., Huangfu, D., Beer, M. A.
10.1101/2023.03.07.531569 — Posted: 2023-03-09
CHD-associated enhancers shape human cardiomyocyte lineage commitment
Armendariz, D. A., Goetsch, S. C., Sundarrajan, A., Sivakumar, S., Wang, Y., Xie, S., Munshi, N. V., Hon, G. C.
10.1101/2022.04.07.487515 — Posted: 2023-01-20
HiCLift: A fast and efficient tool for converting chromatin interaction data between genome assemblies
Wang, X., Yue, F.
10.1101/2023.01.17.524475 — Posted: 2023-01-20
Comparing Genomic and Epigenomic Features across Species Using the WashU Comparative Epigenome Browser
Zhuo, X., Hsu, S., Purushotham, D., Chen, S., Li, D., Wang, T.
10.1101/2022.11.29.518374 — Posted: 2022-12-02
EUGENe: A Python toolkit for predictive analyses of regulatory sequences
Klie, A., Stites, H., Jores, T., Solvason, J. J., Farley, E. K., Carter, H.
10.1101/2022.10.24.513593 — Posted: 2022-11-09
Analysis of alternative polyadenylation from long-read or short-read RNA-seq with LAPA
Celik, M. H., Mortazavi, A.
10.1101/2022.11.08.515683 — Posted: 2022-11-08
Optimizing and benchmarking polygenic risk scores with GWAS summary statistics
Zhao, Z., Gruenloh, T., Wu, Y., Sun, Z., Miao, J., Wu, Y., Song, J., Lu, Q.
10.1101/2022.10.26.513833 — Posted: 2022-11-07
Mapping the convergence of genes for coronary artery disease onto endothelial cell programs
Schnitzler, G. R., Kang, H., Lee-Kim, V. S., Ma, R. X., Zeng, T., Angom, R. S., Fang, S., Vellarikkal, S. K., Zhou, R., Guo, K., Sias-Garcia, O., Bloemendal, A., Munson, G., Guckelberger, P., Nguyen, T. H., Bergman, D. T., Cheng, N., Cleary, B., Aragam, K., Mukhopadhyay, D., Lander, E. S., Finucane, H. K., Gupta, R. M., Engreitz, J. M.
10.1101/2022.11.01.514606 — Posted: 2022-11-04
A systematic genotype-phenotype map for missense variants in the human intellectual disability-associated gene GDI1
Silverstein, R. A., Sun, S. A., Verby, M., Weile, J., Wu, Y., Gebbia, M., Fotiadou, I., Kitaygorodsky, J., Roth, F. P.
10.1101/2021.10.06.463360 — Posted: 2022-10-11

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