Channel:  NCI Human Tumor Atlas Network

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

72 Articles

Actin dysregulation induces neuroendocrine plasticity and immune evasion: a vulnerability of small cell lung cancer
Seo, Y., Zhang, S., Jang, J., Ko, K.-P., Kim, K.-B., Huang, Y., Kim, D.-W., Kim, B., Zou, G., Zhang, J., Jun, S., Chu, W., Kirk, N. A., Hwang, Y. E., Ban, Y. H., Dhar, S. S., Chan, J. M., Lee, M., Rudin, C. M., Park, K.-S., Park, J.-I.
10.1101/2023.02.15.528365 — Posted: 2024-11-12
Multiplexed 3D Analysis of Immune States and Niches in Human Tissue
Yapp, C., Nirmal, A. J., Zhou, F. Y., Maliga, Z., Tefft, J., Montero Llopis, P., Murphy, G. F., Lian, C., Danuser, G., Santagata, S., Sorger, P. K.
10.1101/2023.11.10.566670 — Posted: 2024-03-28
Tumor microenvironmental determinants of high-risk DCIS progression
Glencer, A., Ramalingam, K., Schindler, N., Mori, H., Ghule, P., Lee, K. C., Nachmanson, D., Officer, A., Harismendy, O., Stein, J. L., Stein, G., Weaver, D., Yau, C., Hirst, G. L., Campbell, M. J., Esserman, L. J., Borowsky, A. D.
10.1101/2023.12.01.569676 — Posted: 2024-03-19
A longitudinal single-cell and spatial multiomic atlas of pediatric high-grade glioma
Sussman, J. H., Oldridge, D. A., Yu, W., Chen, C.-H., Zellmer, A. M., Rong, J., Parvaresh-Rizi, A., Thadi, A., Xu, J., Bandyopadhyay, S., Sun, Y., Wu, D., Hunter, C. E., Brosius, S., Ahn, K. J., Baxter, A. E., Koptyra, M. P., Vanguri, R., McGrory, S., Resnick, A. C., Storm, P. B., Amankulor, N. M., Santi, M., Viaene, A. N., Zhang, N., De Raedt, T., Cole, K., Tan, K.
10.1101/2024.03.06.583588 — Posted: 2024-03-08
A cellular and spatial atlas of TP53-associated tissue remodeling in lung adenocarcinoma
Zhao, W., Kepecs, B., Mahadevan, N. R., Segerstolpe, A., Weirather, J. L., Besson, N. R., Giotti, B., Soong, B. Y., Li, C., Vigneau, S., Slyper, M., Wakiro, I., Jane-Valbuena, J., Ashenberg, O., Rotem, A., Bueno, R., Rozenblatt-Rosen, O., Pfaff, K., Rodig, S., Hata, A. N., Regev, A., Johnson, B. E., Tsankov, A. M.
10.1101/2023.06.28.546977 — Posted: 2024-02-14
A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity
Patel, A. G., Ashenberg, O., Collins, N. B., Segerstolpe, A., Jiang, S., Slyper, M., Huang, X., Caraccio, C., Jin, H., Sheppard, H., Xu, K., Chang, T.-C., Orr, B. A., Shirinifard, A., Chapple, R. H., Shen, A., Clay, M. R., Tatevossian, R. G., Reilly, C., Patel, J., Lupo, M., Cline, C., Dionne, D., Porter, C. B. M., Waldman, J., Bai, Y., Zhu, B., Barrera, I., Murray, E., Vigneau, S., Napolitano, S., Wakiro, I., Wu, J., Grimaldi, G., Dellostritto, L., Helvie, K., Rotem, A., Lako, A., Cullen, N., Pfaff, K. L., Karlstrom, A., Jane-Valbuena, J., Todres, E., Thorner, A., Geeleher, P., Rodig, S. J.
10.1101/2024.01.07.574538 — Posted: 2024-01-16
Temporal recording of mammalian development and precancer
Islam, M., Yang, Y., Simmons, A. J., Shah, V. M., Pavan, M. K., Xu, Y., Tasneem, N., Chen, Z., Trinh, L. T., Molina, P., Ramirez-Solano, M. A., Sadien, I., Dou, J., Chen, K., Magnuson, M. A., Rathmell, J., Macara, I. G., Winton, D. J., Liu, Q., Zafar, H., Kalhor, R., Church, G. M., Shrubsole, M. J., Coffey, R. J., Lau, K.
10.1101/2023.12.18.572260 — Posted: 2023-12-19
2D and 3D multiplexed subcellular profiling of nuclear instability in human cancer
Coy, S., Cheng, B., Lee, J. S., Rashid, R., Browning, L., Xu, Y., Chakrabarty, S. S., Yapp, C., Chan, S., Tefft, J. B., Spektor, A., Ligon, K. L., Baker, G. J., Pellman, D., Sorger, P. K., Santagata, S.
10.1101/2023.11.07.566063 — Posted: 2023-11-11
Differential chromatin accessibility and transcriptional dynamics define breast cancer subtypes and their lineages
Iglesia, M. D., Jayasinghe, R. G., Chen, S., Terekhanova, N. V., Herndon, J. M., Storrs, E., Karpova, A., Zhou, D. C., Naser Al Deen, N., Shinkle, A. T., Lu, R. J.-H., Caravan, W., Houston, A., Zhao, Y., Sato, K., Lal, P., Street, C., Rodrigues, F. M., Southard-Smith, A. N., Targino da Costa, A. L. N., Zhu, H., Mo, C.-K., Crowson, L., Fulton, R. S., Wyczalkowski, M. A., Fronick, C. C., Fulton, L. A., Sun, H., Davies, S. R., Appelbaum, E. L., Chasnoff, S. E., Carmody, M., Brooks, C., Liu, R., Wendl, M. C., Oh, C., Bender, D., Cruchaga, C., Harari, O., Bredemeyer, A., Lavine, K., Bose, R., Marge
10.1101/2023.10.31.565031 — Posted: 2023-11-02
Analysis of ductal carcinoma in situ by self-reported race reveals molecular differences related to outcome.
Strand, S. H., Houlahan, K. E., Branch, V., Lynch, T., Harmon, B., Couch, F., Gallagher, K., Kilgore, M., Wei, S., DeMichele, A., King, T., McAuliffe, P., Curtis, C., Owzar, K., Marks, J. R., Colditz, G. A., Hwang, E. S., West, R. B.
10.1101/2023.09.28.560000 — Posted: 2023-10-02

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