bioRxiv/medRxiv TRiP Review Activity

246 Reviews — GigaScience — Bioinformatics

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Clustering trees: a visualisation for evaluating clusterings at multiple resolutions
Zappia, L., Oshlack, A.
10.1101/274035 — Posted: 2018-03-02 — Discussion: 2022-01-22  GigaScience
YAMP: a framework enabling reproducibility in metagenomics research
Visconti, A., Martin, T. C., Falchi, M.
10.1101/223016 — Posted: 2017-11-21 — Discussion: 2022-01-22  GigaScience
Experimenting with reproducibility in bioinformatics
Kim, Y.-M., Poline, J.-B., Dumas, G.
10.1101/143503 — Posted: 2017-06-20 — Discussion: 2022-01-22  GigaScience
Quantitative super-resolution single molecule microscopy dataset of YFP-tagged growth factor receptors
Lukes, T., Pospisil, J., Fliegel, K., Lasser, T., Hagen, G. M.
10.1101/246488 — Posted: 2018-01-11 — Discussion: 2022-01-21  GigaScience
VaPoR: a high-speed validation approach for structural variation using long-read sequencing technology.
Mills, R., Zhao, X., Weber, A. M.
10.1101/105817 — Posted: 2017-02-03 — Discussion: 2022-01-13  GigaScience
NanoSim: nanopore sequence read simulator based on statistical characterization
Chen Yang, Justin Chu, René L Warren, Inanç Birol
10.1101/044545 — Posted: 2016-03-18 — Discussion: 2022-01-13  GigaScience
de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer
Benjamin Istace, Anne Friedrich, Léo d'Agata, Sébastien Faye, Emilie Payen, Odette Beluche, Claudia Caradec, Sabrina Davidas, Corinne Cruaud, Gianni Liti, Arnaud Lemainque, Stefan Engelen, Patrick Wincker, Joseph Schacherer, Jean-Marc Aury
10.1101/066613 — Posted: 2016-07-28 — Discussion: 2022-01-13  GigaScience
Kronos: a workflow assembler for genome analytics and informatics
M Jafar Taghiyar, Jamie Rosner, Diljot Grewal, Bruno Grande, Radhouane Aniba, Jasleen Grewal, Paul C Boutros, Ryan D Morin, Ali Bashashati, Sohrab P Shah
10.1101/040352 — Posted: 2016-02-19 — Discussion: 2022-01-13  GigaScience
iCAVE: an open source tool for immersive 3D visualization of complex biomolecular interaction networks
Vaja Liluashvili, Selim Kalayci, Eugene Flouder, Manda Wilson, Aaron Gabow, Zeynep H. Gümüş
10.1101/061374 — Posted: 2016-06-29 — Discussion: 2022-01-13  GigaScience
Bio-Docklets: Virtualization Containers for Single-Step Execution of NGS Pipelines.
Kim, B., Ali, T. A., Lijeron, C., Afgan, E., Krampis, K.
10.1101/116962 — Posted: 2017-03-15 — Discussion: 2022-01-13  GigaScience

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