bioRxiv/medRxiv TRiP Review Activity

234 Reviews — GigaScience — Bioinformatics

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Deep Machine Learning provides state-of-the-art performance in image-based plant phenotyping

Michael P Pound, Alexandra J Burgess, Michael H Wilson, Jonathan A Atkinson, Marcus Griffiths, Aaron S Jackson, Adrian Bulat, Georgios Tzimiropoulos, Darren M Wells, Erik H Murchie, Tony P Pridmore, Andrew P French

10.1101/053033 — Posted: 2016-05-12 — Discussion: 2022-01-13 GigaScience

VaPoR: a high-speed validation approach for structural variation using long-read sequencing technology.

Mills, R., Zhao, X., Weber, A. M.

10.1101/105817 — Posted: 2017-02-03 — Discussion: 2022-01-13 GigaScience

ISA API: An open platform for interoperable life science experimental metadata

Johnson, D., Cochrane, K., Davey, R. P., Etuk, A., Gonzalez-Beltran, A., Haug, K., Izzo, M., Larralde, M., Lawson, T. N., Minotto, A., Moreno, P., Nainala, V. C., O'Donovan, C., Pireddu, L., Roger, P., Shaw, F., Steinbeck, C., Weber, R. J., Sansone, S.-A., Rocca-Serra, P.

10.1101/2020.11.13.382119 — Posted: 2020-11-16 — Discussion: 2022-01-03 GigaScience

Clusterflock: A Flocking Algorithm for Isolating Congruent Phylogenomic Datasets

Apurva Narechania, Richard H Baker, Rob DeSalle, Barun Mathema, Barry Kreiswirth, Sergios-Orestis Kolokotronis, Paul J Planet

10.1101/045773 — Posted: 2016-03-25 — Discussion: 2022-01-03 GigaScience

Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION sequencing

Minh Duc Cao, Devika Ganesamoorthy, Alysha Elliott, Huihui Zhang, Matthew Cooper, Lachlan Coin

10.1101/019356 — Posted: 2015-05-15 — Discussion: 2022-01-03 GigaScience

NCBI BLAST+ integrated into Galaxy

Peter J. A. Cock, John M. Chilton, Björn Grüning, James E. Johnson, Nicola Soranzo

10.1101/014043 — Posted: 2015-01-21 — Discussion: 2022-01-03 GigaScience

AGOUTI: improving genome assembly and annotation using transcriptome data

Simo V Zhang, Luting Zhuo, Matthew W Hahn

10.1101/033019 — Posted: 2015-11-26 — Discussion: 2022-01-03 GigaScience

Quantitative monitoring of nucleotide sequence data from genetic resources in context of their citation in the scientific literature

Lange, M., Alako, B., Cochrane, G., Ghaffar, M., Mascher, M., Habekost, P.-K., Hillebrand, U., Scholz, U., Zunder, F., Freitag, J., Scholz, A. H.

10.1101/2021.05.10.443393 — Posted: 2021-05-10 — Discussion: 2022-01-03 GigaScience

Tools and techniques for computational reproducibility

Stephen R Piccolo, Michael B Frampton

10.1101/022707 — Posted: 2015-07-17 — Discussion: 2022-01-03 GigaScience

Detection and characterization of low and high genome coverage regions using an efficient running median and a double threshold approach.

Desvillechabrol, D., Bouchier, C., Kennedy, S., Cokelaer, T.

10.1101/092478 — Posted: 2016-12-08 — Discussion: 2021-10-26 GigaScience