bioRxiv/medRxiv TRiP Review Activity

456 Reviews — GigaScience — All Subjects

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Benchmarking ultra-high molecular weight DNA preservation methods for long-read and long-range sequencing
Dahn, H. A., Mountcastle, J., Balacco, J., Winkler, S., Bista, I., Schmitt, A. D., Vinnere Pettersson, O., Formenti, G., Oliver, K., Smith, M., Tan, W., Kraus, A., Mac, S., Komoroske, L. M., Lama, T., Crawford, A. J., Murphy, R. W., Brown, S., Scott, A. F., Morin, P. A., Jarvis, E. D., Fedrigo, O.
10.1101/2021.07.13.451380 — Posted: 2021-07-14 — Discussion: 2023-03-01  GigaScience
High-Spatiotemporal-Resolution Nanopore Sequencing of SARS-CoV-2 and Host Cell RNAs
Tombacz, D., Dormo, A., Gulyas, G., Csabai, Z., Prazsak, I., Kakuk, B., Harangozo, A., Jankovics, I., Denes, B., Boldogkoi, Z.
10.1101/2021.08.20.457128 — Posted: 2021-08-20 — Discussion: 2023-02-17  GigaScience
Association Mapping Across a Multitude of Traits Collected in Diverse Environments Identifies Pleiotropic Loci in Maize.
Mural, R. V., Sun, G., Grzybowski, M., Tross, M. C., Jin, H., Smith, C., Newton, L., Andorf, C. M., Woodhouse, M. R., Thompson, A. M., Sigmon, B. V., Schnable, J. C.
10.1101/2022.02.25.480753 — Posted: 2022-02-25 — Discussion: 2023-02-17  GigaScience
Disease classification for whole blood DNA methylation: meta-analysis, missing values imputation, and XAI
Kalyakulina, A., Yusipov, I., Bacalini, M. G., Franceschi, C., Vedunova, M., Ivanchenko, M.
10.1101/2022.05.10.491404 — Posted: 2022-05-11 — Discussion: 2023-02-17  GigaScience
A curated human cellular microRNAome based on 196 primary cell types
Patil, A. H., Baran, A., Brehm, Z., McCall, M. N., Halushka, M. K.
10.1101/2022.05.16.492160 — Posted: 2022-05-17 — Discussion: 2023-02-17  GigaScience
Karyon: a computational framework for the diagnosis of hybrids, aneuploids, and other non-standard architectures in genome assemblies.
Naranjo-Ortiz, M. A., Molina, M., Mixao, V., Gabaldon, T.
10.1101/2021.05.23.445324 — Posted: 2021-05-23 — Discussion: 2023-02-17  GigaScience
BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.
Moraga, C., Sanchez, E., Galvao Ferrarini, M., Gutierrez, R. A., Vidal, E. A., Sagot, M.-F.
10.1101/2020.08.07.240689 — Posted: 2020-08-07 — Discussion: 2023-02-17  GigaScience
A chromosome-level reference genome of Ensete glaucum gives insight into diversity, chromosomal and repetitive sequence evolution in the Musaceae
Wang, Z., Rouard, M., Biswas, M. K., Droc, G., Cui, D., Roux, N., Baurens, F.-C., Ge, X.-J., Schwarzacher, T., Heslop-Harrison, J., Liu, Q.
10.1101/2021.11.23.469474 — Posted: 2021-11-24 — Discussion: 2023-02-15  GigaScience
ChemChaste: Simulating spatially inhomogenous biochemical reaction-diffusion systems for modelling cell-environment feedbacks
Johnson, C. G. M., Fletcher, A. G., soyer, o. s.
10.1101/2021.10.21.465304 — Posted: 2021-10-22 — Discussion: 2023-02-15  GigaScience
Spacemake: processing and analysis of large-scale spatial transcriptomics data
Sztanka-Toth, T. R., Jens, M., Karaiskos, N., Rajewsky, N.
10.1101/2021.11.07.467598 — Posted: 2021-11-08 — Discussion: 2023-02-15  GigaScience

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