bioRxiv/medRxiv TRiP Review Activity

336 Reviews — GigaScience — All Subjects

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Building the Mega Single Cell Transcriptome Ocular Meta-Atlas
Swamy, V. S., Fufa, T. D., Hufnagel, R. B., McGaughey, D. M.
10.1101/2021.03.26.437190 — Posted: 2021-03-28 — Discussion: 2022-01-24  GigaScience
parSMURF, a High Performance Computing tool for the genome-wide detection of pathogenic variants
Petrini, A., Mesiti, M., Schubach, M., Frasca, M., Danis, D., Re, M., Grossi, G., Cappelletti, L., Castrignano', T., Robinson, P. N., Valentini, G.
10.1101/2020.03.18.994079 — Posted: 2020-03-20 — Discussion: 2022-01-24  GigaScience
Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods
Courtine, D., Provaznik, J., Reboul, J., Blanc, G., Benes, V., Ewbank, J. J.
10.1101/866020 — Posted: 2019-12-06 — Discussion: 2022-01-24  GigaScience
Lilikoi V2.0: a deep-learning enabled, personalized pathway-based R package for diagnosis and prognosis predictions using metabolomics data
Xinying Fang, Yu Liu, Zhijie Ren, Yuheng Du, Qianhui Huang, Lana X. Garmire
10.1101/2020.07.09.195677 — Posted: 2020-07-10 — Discussion: 2022-01-24  GigaScience
Genome Diversity in Ukraine
Oleksyk, T. K., Wolfsberger, W. W., Weber, A., Shchubelka, K., Oleksyk, O. T., Levchuk, O., Patrus, A., Lazar, N., Castro-Marquez, S. O., Boldyzhar, P., Urbanovych, A., Stakhovska, V., Malyar, K., Chervyakova, S., Podoroha, O., Kovalchuk, N., Hasynets, Y., Rodriguez-Flores, J. L., Medley, S., Battistuzzi, F. U., Liu, R., Hou, Y., Chen, S., Yang, H., Yeager, M., Dean, M., Mills, R. E., Smolanka, V.
10.1101/2020.08.07.238329 — Posted: 2020-08-07 — Discussion: 2022-01-24  GigaScience
A web-server framework to explore and visualize large genomic variation data in lab and its applications to wheat and its progenitors
Wang, W., Wang, Z., Li, X., Ni, Z., Hu, Z., Xin, M., Peng, H., Yao, Y., Sun, Q., Guo, W.
10.1101/626705 — Posted: 2019-05-16 — Discussion: 2022-01-24  GigaScience
CNVpytor: a tool for CNV/CNA detection and analysis from read depth and allele imbalance in whole genome sequencing
Suvakov, M., Panda, A., Diesh, C., Holmes, I., Abyzov, A.
10.1101/2021.01.27.428472 — Posted: 2021-01-27 — Discussion: 2022-01-24  GigaScience
EWAS-Galaxy: a tools suite for population epigenetics integrated into Galaxy
Murat, K., Gruning, B., Poterlowicz, P. W., Westgate, G., Tobin, D. J., Poterlowicz, K.
10.1101/553784 — Posted: 2019-02-19 — Discussion: 2022-01-24  GigaScience
iGenomics: Comprehensive DNA Sequence Analysis on your Smartphone
Palatnick, A., Zhou, B., Ghedin, E., Schatz, M. C.
10.1101/2020.02.11.944132 — Posted: 2020-02-12 — Discussion: 2022-01-24  GigaScience
CRISPRCasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems
Padilha, V. A., Alkhnbashi, O. S., Shah, S. A., de Carvalho, A. C. P. L. F., Backofen, R.
10.1101/817619 — Posted: 2019-10-31 — Discussion: 2022-01-24  GigaScience

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