bioRxiv/medRxiv TRiP Review Activity

246 Reviews — GigaScience — Bioinformatics

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Aequatus: An open-source homology browser
Anil S. Thanki, Sarah Ayling, Javier Herrero, Robert P. Davey
10.1101/055632 — Posted: 2016-05-27 — Discussion: 2022-01-22  GigaScience
Reproducible genomics analysis pipelines with GNU Guix
Wurmus, R., Uyar, B., Osberg, B., Franke, V., Gosdschan, A., Wreczycka, K., Ronen, J., Akalin, A.
10.1101/298653 — Posted: 2018-04-11 — Discussion: 2022-01-22  GigaScience
Experimenting with reproducibility in bioinformatics
Kim, Y.-M., Poline, J.-B., Dumas, G.
10.1101/143503 — Posted: 2017-06-20 — Discussion: 2022-01-22  GigaScience
NAT/NCS2-hound: A webserver for the detection and evolutionary classification of prokaryotic and eukaryotic nucleobase-cation symporters of the NAT/NCS2 family.
Chaliotis, A., Vlastaridis, P., Ntountoumi, C., Botou, M., Yalelis, V., Lazou, P., Tatsaki, K., Mossialos, D., Frillingos, S., Amoutzias, G.
10.1101/332452 — Posted: 2018-05-28 — Discussion: 2022-01-22  GigaScience
SV-plaudit: A cloud-based framework for manually curating thousands of structural variants
Belyeu, J. R., Nicholas, T. J., Pedersen, B. S., Sasani, T. A., Havrilla, J. M., Kravitz, S. N., Conway, M. E., Lohman, B. K., Quinlan, A. R., Layer, R. M.
10.1101/265058 — Posted: 2018-02-14 — Discussion: 2022-01-22  GigaScience
Efficient and accurate detection of splice junctions from RNAseq with Portcullis
Mapleson, D., Venturini, L., Kaithakottil, G., Swarbreck, D.
10.1101/217620 — Posted: 2017-11-10 — Discussion: 2022-01-22  GigaScience
AMBER: Assessment of Metagenome BinnERs
Meyer, F., Hofmann, P., Belmann, P., Garrido-Oter, R., Fritz, A., Sczyrba, A., McHardy, A. C.
10.1101/239582 — Posted: 2017-12-25 — Discussion: 2022-01-22  GigaScience
Hot-starting software containers for bioinformatics analyses
Zhang, P., Hung, L.-H., Lloyd, W. J., Yeung, K. Y.
10.1101/204495 — Posted: 2017-10-17 — Discussion: 2022-01-22  GigaScience
ANNOgesic: A Pipeline To Translate Bacterial/Archaeal RNA-Seq Data Into High-Resolution Genome Annotations
Yu, S.-H., Vogel, J., Foerstner, K. U.
10.1101/143081 — Posted: 2017-05-27 — Discussion: 2022-01-22  GigaScience
Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes
Johnson, L. K., Alexander, H., Brown, C. T.
10.1101/323576 — Posted: 2018-05-17 — Discussion: 2022-01-22  GigaScience

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