bioRxiv/medRxiv TRiP Review Activity

246 Reviews — GigaScience — Bioinformatics

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HTSlib - C library for reading/writing high-throughput sequencing data
Bonfield, J. K., Marshall, J., Danecek, P., Li, H., Ohan, V., Whitwham, A., Keane, T., Davies, R. M.
10.1101/2020.12.16.423064 — Posted: 2020-12-16 — Discussion: 2022-01-24  GigaScience
Rapid development of cloud-native intelligent data pipelines for scientific data streams using the HASTE Toolkit
Blamey, B., Toor, S., Dahlö, M., Wieslander, H., Harrison, P. J., Sintorn, I.-M., Sabirsh, A., Wählby, C., Spjuth, O., Hellander, A.
10.1101/2020.09.13.274779 — Posted: 2020-09-14 — Discussion: 2022-01-24  GigaScience
SoupX removes ambient RNA contamination from droplet based single cell RNA sequencing data
Young, M. D., Behjati, S.
10.1101/303727 — Posted: 2018-04-20 — Discussion: 2022-01-24  GigaScience
Ultra-deep, long-read nanopore sequencing of mock microbial community standards
Nicholls, S. M., Quick, J. C., Tang, S., Loman, N. J.
10.1101/487033 — Posted: 2018-12-04 — Discussion: 2022-01-23  GigaScience
Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data
Webster, T. H., Couse, M., Grande, B. M., Karlins, E., Phung, T., Richmond, P. A., Whitford, W., Wilson Sayres, M. A.
10.1101/346940 — Posted: 2018-06-14 — Discussion: 2022-01-23  GigaScience
Interpretable and accurate prediction models for metagenomics data
Prifti, E., Chevaleyre, Y., Hanczar, B., Belda Cuesta, E., Clement, K., Danchin, A., Zucker, J.-D.
10.1101/409144 — Posted: 2018-09-07 — Discussion: 2022-01-23  GigaScience
Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection
Ohta, T., Tanjo, T., Ogasawara, O.
10.1101/456756 — Posted: 2018-10-30 — Discussion: 2022-01-23  GigaScience
Evaluation of computational genotyping of Structural Variations for clinical diagnoses.
Chander, V., Gibbs, R. A., Sedlazeck, F. J.
10.1101/558247 — Posted: 2019-02-22 — Discussion: 2022-01-23  GigaScience
Discovering Data Access and Use Requirements Using the Data Tags Suite (DATS) Model
Alter, G., Gonzalez-Beltran, A., Ohno-Machado, L., Rocca-Serra, P.
10.1101/518571 — Posted: 2019-01-11 — Discussion: 2022-01-23  GigaScience
SciPipe - A workflow library for agile development of complex and dynamic bioinformatics pipelines
Lampa, S., Dahlö, M., Alvarsson, J., Spjuth, O.
10.1101/380808 — Posted: 2018-08-01 — Discussion: 2022-01-23  GigaScience

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