bioRxiv/medRxiv TRiP Review Activity

336 Reviews — GigaScience — All Subjects

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Rapid development of cloud-native intelligent data pipelines for scientific data streams using the HASTE Toolkit
Blamey, B., Toor, S., Dahlö, M., Wieslander, H., Harrison, P. J., Sintorn, I.-M., Sabirsh, A., Wählby, C., Spjuth, O., Hellander, A.
10.1101/2020.09.13.274779 — Posted: 2020-09-14 — Discussion: 2022-01-24  GigaScience
A chromosome-level genome assembly for the Eastern Fence Lizard (Sceloporus undulatus), a reptile model for physiological and evolutionary ecology
Westfall, A. K., Telemeco, R. S., Grizante, M. B., Waits, D. S., Clark, A. D., Simpson, D. Y., Klabacka, R. L., Sullivan, A. P., Perry, G. H., Sears, M. W., Cox, C. L., Cox, R. M., Gifford, M. E., John-Alder, H. B., Langkilde, T., Angilletta, M., Leache, A., Tollis, M., Kusumi, K., Schwartz, T. S.
10.1101/2020.06.06.138248 — Posted: 2020-06-06 — Discussion: 2022-01-24  GigaScience
Lilikoi V2.0: a deep-learning enabled, personalized pathway-based R package for diagnosis and prognosis predictions using metabolomics data
Xinying Fang, Yu Liu, Zhijie Ren, Yuheng Du, Qianhui Huang, Lana X. Garmire
10.1101/2020.07.09.195677 — Posted: 2020-07-10 — Discussion: 2022-01-24  GigaScience
Global ocean resistome revealed: exploring Antibiotic Resistance Genes (ARGs) abundance and distribution on TARA oceans samples through machine learning tools
Cuadrat, R. R. d. C., Sorokina, M., Andrade, B. G., Davila, A. M. R.
10.1101/765446 — Posted: 2019-09-19 — Discussion: 2022-01-24  GigaScience
parSMURF, a High Performance Computing tool for the genome-wide detection of pathogenic variants
Petrini, A., Mesiti, M., Schubach, M., Frasca, M., Danis, D., Re, M., Grossi, G., Cappelletti, L., Castrignano', T., Robinson, P. N., Valentini, G.
10.1101/2020.03.18.994079 — Posted: 2020-03-20 — Discussion: 2022-01-24  GigaScience
DrivAER: Identification of driving transcriptional programs in single-cell RNA sequencing data
Simon, L. M., Yan, F., Zhao, Z.
10.1101/864165 — Posted: 2019-12-05 — Discussion: 2022-01-24  GigaScience
Genome Diversity in Ukraine
Oleksyk, T. K., Wolfsberger, W. W., Weber, A., Shchubelka, K., Oleksyk, O. T., Levchuk, O., Patrus, A., Lazar, N., Castro-Marquez, S. O., Boldyzhar, P., Urbanovych, A., Stakhovska, V., Malyar, K., Chervyakova, S., Podoroha, O., Kovalchuk, N., Hasynets, Y., Rodriguez-Flores, J. L., Medley, S., Battistuzzi, F. U., Liu, R., Hou, Y., Chen, S., Yang, H., Yeager, M., Dean, M., Mills, R. E., Smolanka, V.
10.1101/2020.08.07.238329 — Posted: 2020-08-07 — Discussion: 2022-01-24  GigaScience
Multivariate GWAS: Generalized Linear Models, Prior Weights, and Double Sparsity
Chu, B. B., Keys, K. L., Sinsheimer, J. S., Lange, K.
10.1101/697755 — Posted: 2019-07-11 — Discussion: 2022-01-24  GigaScience
CNVpytor: a tool for CNV/CNA detection and analysis from read depth and allele imbalance in whole genome sequencing
Suvakov, M., Panda, A., Diesh, C., Holmes, I., Abyzov, A.
10.1101/2021.01.27.428472 — Posted: 2021-01-27 — Discussion: 2022-01-24  GigaScience
iGenomics: Comprehensive DNA Sequence Analysis on your Smartphone
Palatnick, A., Zhou, B., Ghedin, E., Schatz, M. C.
10.1101/2020.02.11.944132 — Posted: 2020-02-12 — Discussion: 2022-01-24  GigaScience

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