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104 Reviews — GigaScience — Genomics

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The Gene-Rich Genome of the Scallop Pecten maximus
Kenny, N. J., McCarthy, S. A., Dudchenko, O., James, K., Betteridge, E., Corton, C., Dolucan, J., Mead, D., Oliver, K., Omer, A. D., Pelan, S., Ryan, Y., Sims, Y., Skelton, J., Smith, M., Torrance, J., Weisz, D., Wipat, A., Aiden, E. L., Howe, K., Williams, S. T.
10.1101/2020.01.08.887828 — Posted: 2020-01-09 — Discussion: 2022-01-24  GigaScience
Long-reads assembly of the Brassica napus reference genome, Darmor-bzh
Rousseau-Gueutin, M., Belser, C., Da Silva, C., Richard, G., Istace, B., Cruaud, C., Falentin, C., Boideau, F., Boutte, J., Delourme, R., Deniot, G., Engelen, S., Ferreira de Carvalho, J., Lemainque, A., Maillet, L., Morice, J., Wincker, P., Denoeud, F., Chevre, A.-M., Aury, J.-M.
10.1101/2020.07.22.215749 — Posted: 2020-07-22 — Discussion: 2022-01-24  GigaScience
Chromatin conformation capture (Hi-C) sequencing of patient-derived xenografts: analysis guidelines
Dozmorov, M. G., Tyc, K. M., Sheffield, N. C., Boyd, D. C., Olex, A. L., Reed, J., Harrell, J. C.
10.1101/2020.10.17.343814 — Posted: 2020-10-17 — Discussion: 2022-01-24  GigaScience
Accurate assembly of the olive baboon (Papio anubis) genome using long-read and Hi-C data
Batra, S. S., Levy-Sakin, M., Robinson, J., Guillory, J., Durinck, S., Kwok, P.-Y., Cox, L. A., Seshagiri, S., Song, Y. S., Wall, J. D.
10.1101/678771 — Posted: 2019-06-24 — Discussion: 2022-01-24  GigaScience
Sequencing smart: De novo sequencing and assembly approaches for non-model mammals.
Etherington, G. J., Heavens, D., Baker, D., Lister, A., McNelly, R., Garcia Accinelli, G., Clavijo, B. J., Macaulay, I., Haerty, W., Di Palma, F.
10.1101/723890 — Posted: 2019-08-05 — Discussion: 2022-01-24  GigaScience
Reduced chromatin accessibility underlies gene expression differences in homologous chromosome arms of hexaploid wheat and diploid Aegilops tauschii
Lu, F.-H., McKenzie, N., Gardiner, L.-J., Luo, M., Hall, A., Bevan, M. W.
10.1101/571133 — Posted: 2019-03-07 — Discussion: 2022-01-24  GigaScience
A chromosome-level genome assembly for the Eastern Fence Lizard (Sceloporus undulatus), a reptile model for physiological and evolutionary ecology
Westfall, A. K., Telemeco, R. S., Grizante, M. B., Waits, D. S., Clark, A. D., Simpson, D. Y., Klabacka, R. L., Sullivan, A. P., Perry, G. H., Sears, M. W., Cox, C. L., Cox, R. M., Gifford, M. E., John-Alder, H. B., Langkilde, T., Angilletta, M., Leache, A., Tollis, M., Kusumi, K., Schwartz, T. S.
10.1101/2020.06.06.138248 — Posted: 2020-06-06 — Discussion: 2022-01-24  GigaScience
Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis
Zamyatin, A., Avdeyev, P., Liang, J., Sharma, A., Chen, C., Lukyanchikova, V., Alexeev, N., Tu, Z., Alekseyev, M. A., Sharakhov, I. V.
10.1101/2020.09.29.318477 — Posted: 2020-09-29 — Discussion: 2022-01-24  GigaScience
Framework for determining accuracy of RNA sequencing data for gene expression profiling of single samples
Beale, H. C., Roger, J., Cattle, M., McKay, L., Learned, K., Lyle, G., Kephart, E., Currie, R., Lam, D. L., Sanders, L., Pfeil, J., Vivian, J., Bjork, I., Salama, S., Haussler, D., Vaske, O.
10.1101/716829 — Posted: 2019-07-30 — Discussion: 2022-01-24  GigaScience
A chromosome-level genome assembly for the Pacific oyster (Crassostrea gigas)
Penaloza, C., Gutierrez, A. P., Eory, L., Wang, S., Guo, X., Archibald, A. L., Bean, T. P., Houston, R. D.
10.1101/2020.09.25.313494 — Posted: 2020-09-25 — Discussion: 2022-01-24  GigaScience

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