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104 Reviews — GigaScience — Genomics

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Draft genome sequence of the Solanum aethiopicum provides insights into disease resistance, drought tolerance and the evolution of the genome

Song, B., Song, Y., Fu, Y., Kizito, E. B., Kabod, P. N., Liu, H., Kamenya, S. N., Muthemba, S., Kariba, R., Li, X., Wang, S., Cheng, S., Muchugi, A., Jamnadass, R., Shapiro, H.-Y., Deynze, A. V., Yang, H., Wang, J., Xu, X., Odeny, D. A., Liu, X.

10.1101/532077 — Posted: 2019-01-28 — Discussion: 2022-01-31 GigaScience

Multivariate GWAS: Generalized Linear Models, Prior Weights, and Double Sparsity

Chu, B. B., Keys, K. L., Sinsheimer, J. S., Lange, K.

10.1101/697755 — Posted: 2019-07-11 — Discussion: 2022-01-24 GigaScience

Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods

Courtine, D., Provaznik, J., Reboul, J., Blanc, G., Benes, V., Ewbank, J. J.

10.1101/866020 — Posted: 2019-12-06 — Discussion: 2022-01-24 GigaScience

Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacbio Sequel II system and ultralong reads of Oxford Nanopore

Lang, D., Zhang, S., Ren, P., Liang, F., Sun, Z., Meng, G., Tan, Y., Hu, J., Li, X., Lai, Q., Han, L., Wang, D., Hu, F., Wang, W., Liu, S.

10.1101/2020.02.13.948489 — Posted: 2020-02-14 — Discussion: 2022-01-24 GigaScience

Genome Diversity in Ukraine

Oleksyk, T. K., Wolfsberger, W. W., Weber, A., Shchubelka, K., Oleksyk, O. T., Levchuk, O., Patrus, A., Lazar, N., Castro-Marquez, S. O., Boldyzhar, P., Urbanovych, A., Stakhovska, V., Malyar, K., Chervyakova, S., Podoroha, O., Kovalchuk, N., Hasynets, Y., Rodriguez-Flores, J. L., Medley, S., Battistuzzi, F. U., Liu, R., Hou, Y., Chen, S., Yang, H., Yeager, M., Dean, M., Mills, R. E., Smolanka, V.

10.1101/2020.08.07.238329 — Posted: 2020-08-07 — Discussion: 2022-01-24 GigaScience

Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American killifish from the Fundulus genus

Johnson, L. K., Sahasrabudhe, R., Gill, T., Roach, J. L., Froenicke, L., Brown, C. T., Whitehead, A.

10.1101/686246 — Posted: 2019-06-28 — Discussion: 2022-01-24 GigaScience

The Gene-Rich Genome of the Scallop Pecten maximus

Kenny, N. J., McCarthy, S. A., Dudchenko, O., James, K., Betteridge, E., Corton, C., Dolucan, J., Mead, D., Oliver, K., Omer, A. D., Pelan, S., Ryan, Y., Sims, Y., Skelton, J., Smith, M., Torrance, J., Weisz, D., Wipat, A., Aiden, E. L., Howe, K., Williams, S. T.

10.1101/2020.01.08.887828 — Posted: 2020-01-09 — Discussion: 2022-01-24 GigaScience

High-quality chromosome-scale assembly of the walnut (Juglans regia L) reference genome

Marrano, A., Britton, M., Zaini, P. A., Zimin, A., Workman, R., Puiu, D., Bianco, L., Di Pierro, E. A., Allen, B., Chakraborty, S., Troggio, M., Leslie, C., Timp, W., Dendekar, A., Salzberg, S., Neale, D. B.

10.1101/809798 — Posted: 2019-10-17 — Discussion: 2022-01-24 GigaScience

Long-reads assembly of the Brassica napus reference genome, Darmor-bzh

Rousseau-Gueutin, M., Belser, C., Da Silva, C., Richard, G., Istace, B., Cruaud, C., Falentin, C., Boideau, F., Boutte, J., Delourme, R., Deniot, G., Engelen, S., Ferreira de Carvalho, J., Lemainque, A., Maillet, L., Morice, J., Wincker, P., Denoeud, F., Chevre, A.-M., Aury, J.-M.

10.1101/2020.07.22.215749 — Posted: 2020-07-22 — Discussion: 2022-01-24 GigaScience

Accurate assembly of the olive baboon (Papio anubis) genome using long-read and Hi-C data

Batra, S. S., Levy-Sakin, M., Robinson, J., Guillory, J., Durinck, S., Kwok, P.-Y., Cox, L. A., Seshagiri, S., Song, Y. S., Wall, J. D.

10.1101/678771 — Posted: 2019-06-24 — Discussion: 2022-01-24 GigaScience