bioRxiv/medRxiv TRiP Review Activity

450 Reviews — All Partners — Genomics

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Single-cell multi-omic analysis reveals principles of transcription-chromatin interaction during embryogenesis
Bhardwaj, V., Griffa, A., Gaza, H. V., Zeller, P., van Oudenaarden, A.
10.1101/2024.09.23.614335 — Posted: 2024-09-24 — Discussion: 2025-12-20  Review Commons
Nanopore genome skimming with Illumina polishing yields highly accurate mitogenome sequences: a case study of Niphargus amphipods
Salussolia, A., Lecoquierre, N., Stoch, F., Flot, J.-F.
10.1101/2025.09.24.678374 — Posted: 2025-09-26 — Discussion: 2025-12-19  Peer Community In
Mechanistic dissection of GRHL2 and PR transcriptional co-regulation in breast cells
Aarts, M. T., Nordin, A., Cantu, C., van Boxtel, A. L., van Amerongen, R.
10.1101/2025.09.01.673508 — Posted: 2025-09-05 — Discussion: 2025-12-08  Review Commons
Multimodal single-cell analyses reveal distinct fusion-regulated transcriptional programs in Ewing sarcoma.
Waltner, O. G., Apfelbaum, A. A., Wrenn, E. D., Bhise, S. S., Kanaan, S. B., Gladden, R. G., Mendoza, M. A., Volden, R., Kronenberg, Z., Patel, A., Dyer, M., Sarthy, J. F., Lawlor, E. R., Furlan, S. N.
10.1101/2025.06.18.660457 — Posted: 2025-06-24 — Discussion: 2025-12-05  eLife
Stranded short nascent strand sequencing reveals the topology of eukaryotic DNA replication origins in Trypanosoma brucei.
STANOJCIC, S., BARCKMANN, B., MONSIEURS, P., CROBU, L., GEORGE, S., Sterkers, Y.
10.1101/2024.12.03.626629 — Posted: 2024-12-06 — Discussion: 2025-12-04  eLife
Evolutionary remodeling of non-canonical ORF translation in mammals
Chang, Y., Lei, T., Zhou, F., Jiang, J., Huang, Y., Zhu, Z., Zhang, H.
10.1101/2025.09.16.676541 — Posted: 2025-09-17 — Discussion: 2025-12-02  eLife
Beyond the transcript: chromatin implications in trans-splicing in Trypanosomatids
Zambrano Siri, R. T., Beati, P., Inchausti, L., Smircich, P., Alonso, G. D., Ocampo, J.
10.1101/2025.07.08.663533 — Posted: 2025-07-11 — Discussion: 2025-12-02  Review Commons
RNA-SeqEZPZ: A Point-and-Click Pipeline for Comprehensive Transcriptomics Analysis with Interactive Visualizations
Taslim, C. R., Zhang, Y., Kendall, G. C., Theisen, E. R.
10.1101/2024.12.20.629844 — Posted: 2024-12-23 — Discussion: 2025-11-28  GigaScience
Neisseria gonorrhoeae LIN codes: a Robust, Multi-Resolution Lineage Nomenclature
Unitt, A., Krisna, M. A., Parfitt, K. M., Jolley, K. A., Maiden, M. C. J., Harrison, O. B.
10.1101/2025.03.28.646058 — Posted: 2025-04-03 — Discussion: 2025-11-27  eLife
Raman spectra and gene expression correspondences reveal global stoichiometry conservation architecture in cells
Kamei, K.-i. F., Kobayashi-Kirschvink, K. J., Nozoe, T., Nakaoka, H., Umetani, M., Wakamoto, Y.
10.1101/2023.05.09.539921 — Posted: 2023-05-10 — Discussion: 2025-11-26  eLife

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