bioRxiv/medRxiv TRiP Review Activity

46 Reviews — EMBO Press — Genomics

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Comparison of Infinium MethylationEPIC v2.0 to v1.0 for human population epigenetics: considerations for addressing EPIC version differences in DNA methylation-based tools
Zhuang, B. C., Jude, M. S., Konwar, C., Ryan, C. P., Whitehead, J., Engelbrecht, H.-R., MacIsaac, J. L., Dever, K., Toan, T. K., Korinek, K., Zimmer, Z., Huffman, K. M., Lee, N. R., McDade, T. W., Kuzawa, C. W., Belsky, D. W., Kobor, M. S.
10.1101/2024.07.02.600461 — Posted: 2024-07-03 — Discussion: 2025-10-07  EMBO Press
Defective Integrator activity shapes the transcriptome of patients with multiple sclerosis
Porozhan, Y., Carstensen, M., Thouroude, S., Costallat, M., Rachez, C., Batsche, E., Petersen, T., Christensen, T., Muchardt, C.
10.1101/2023.11.24.568591 — Posted: 2023-11-24 — Discussion: 2024-07-30  EMBO Press
Recursive splicing discovery using lariats in total RNA sequencing
Hoppe, E. R., Udy, D. B., Bradley, R. K.
10.1101/2022.12.22.521701 — Posted: 2022-12-23 — Discussion: 2023-05-26  EMBO Press
Telescoping bimodal latent Dirichlet allocation to identify expression QTLs across tissues
Gewirtz, A. D., Townes, F. W., Engelhardt, B. E.
10.1101/2021.10.27.466156 — Posted: 2021-10-28 — Discussion: 2023-05-26  EMBO Press
Z-Flipon Variants reveal the many roles of Z-DNA and Z-RNA in health and disease
Umerenkov, D., Herbert, A., Konovalov, D., Danilova, A., Beknazarov, N., Kokh, V., Fedorov, A., Poptsova, M.
10.1101/2023.01.12.523822 — Posted: 2023-01-13 — Discussion: 2023-05-24  EMBO Press
Hda1C restricts the transcription initiation frequency to limit divergent non-coding RNA transcription
Gowthaman, U., Ivanov, M., Schwarz, I., Patel, H. P., Muller, N. A., Garcia-Pichardo, D., Lenstra, T. L., Marquardt, S.
10.1101/2021.04.06.438606 — Posted: 2021-04-06 — Discussion: 2023-03-15  EMBO Press
A genome-wide CRISPR functional survey of the human phagocytosis molecular machinery
Essletzbichler, P., Sedlyarov, V., Frommelt, F., Soulat, D., Heinz, L. X., Stefanovic, A., Neumayer, B., Superti-Furga, G.
10.1101/2022.09.08.507072 — Posted: 2022-09-08 — Discussion: 2023-02-14  EMBO Press
De novo discovery of traits co-occurring with chronic obstructive pulmonary disease
Golovina, E., Fadason, T., Jaros, R. K., Kumar, H., John, J., Burrowes, K., Tawhai, M., O'Sullivan, J. M.
10.1101/2022.07.20.500731 — Posted: 2022-07-21 — Discussion: 2023-01-25  EMBO Press
The chromatin factor ROW cooperates with BEAF-32 in regulating long-range genes
Herman, N., Kadener, S., Shifman, S.
10.1101/2021.03.08.434270 — Posted: 2021-03-08 — Discussion: 2022-11-21  EMBO Press
Vesalius: Tissue anatomy from spatial transcriptomic data.
Martin, P. C. N., Lövkvist, C., Hong, B.-W., Won, K. J.
10.1101/2021.08.13.456235 — Posted: 2021-08-14 — Discussion: 2022-11-21  EMBO Press

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