bioRxiv/medRxiv TRiP Review Activity

336 Reviews — GigaScience — All Subjects

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A Galaxy-based training resource for single-cell RNA-seq quality control and analyses.
Etherington, G. J., Soranzo, N., Mohammed, S., Haerty, W., Davey, R., Di-Palma, F.
10.1101/724047 — Posted: 2019-08-04 — Discussion: 2022-03-14  GigaScience
Pseudo-chromosome length genome assembly of a double haploid ‘Bartlett’ pear (Pyrus communis L.)
Linsmith, G., Rombauts, S., Montanari, S., Deng, C. H., Celton, J.-M., Guerif, P., Liu, C., Lohaus, R., Zurn, J. D., Cestaro, A., Bassil, N. V., Bakker, L. V., Schijlen, E., Gardiner, S. E., Lespinasse, Y., Durel, C.-E., Velasco, R., Neale, D. B., Chagne, D., Van de Peer, Y., Troggio, M., Bianco, L.
10.1101/651778 — Posted: 2019-05-27 — Discussion: 2022-03-14  GigaScience
Improved chromosome level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) based on SMRT Sequencing and linkage map.
Blande, D., Smolander, O.-P., Ahola, V., Rastas, P., Tanskanen, J., Kammonen, J. I., Oostra, V., Pellegrini, L., Ikonen, S., Dallas, T., DiLeo, M. F., Duplouy, A., Duru, I. C., Halimaa, P., Kahilainen, A., Kuwar, S. S., Karenlampi, S. O., Lafuente, E., Luo, S., Makkonen, J., Nair, A., Celorio-Mancera, M. d. l. P., Pennanen, V., Ruokolainen, A., Sundell, T., Tervahauta, A. I., Twort, V., van Bergen, E., Osterman-Udd, J., Paulin, L., Frilander, M. J., Auvinen, P., Saastamoinen, M.
10.1101/2020.11.03.364950 — Posted: 2020-11-04 — Discussion: 2022-03-14  GigaScience
The Preprocessed Connectomes Project Repository of Manually Corrected Skull-stripped T1-weighted Anatomical MRI Data.
Benjamin Puccio, James P Pooley, John S Pellman, Elise C Taverna, Richard Cameron Craddock
10.1101/067017 — Posted: 2016-07-31 — Discussion: 2022-03-14  GigaScience
HOMINID: A framework for identifying associations between host genetic variation and microbiome composition
Lynch, J., Tang, K., Sands, J., Sands, M., Tang, E., Mukherjee, S., Knights, D., Blekhman, R.
10.1101/081323 — Posted: 2016-10-17 — Discussion: 2022-03-14  GigaScience
Detection of fusion transcripts and their genomic breakpoints from RNA sequencing data
Hoogstrate, Y., Komor, M. A., Böttcher, R., van Riet, J., van de Werken, H. J. G., van Lieshout, S., Hoffmann, R., van den Broek, E., Bolijn, A. S., Dits, N., Sie, D., van der Meer, D., Pepers, F., Bangma, C. H., van Leenders, A. J. H. L., Smid, M., French, P. J., Martens, J. W. M., van Workum, W., van der Spek, P. J., Janssen, B., Caldenhoven, E., Rausch, C., de Jong, M., Stubbs, A. P., Meijer, G. A., Fijneman, R. J. A., Jenster, G.
10.1101/2021.05.17.441778 — Posted: 2021-05-17 — Discussion: 2022-03-14  GigaScience
LED light gradient as a screening tool for light quality responses in model plant species
Lejeune, P., Fratamico, A., Bouche, F., Huerga-Fernandez, S., Tocquin, P., Perilleux, C.
10.1101/2020.10.08.320002 — Posted: 2020-10-08 — Discussion: 2022-03-14  GigaScience
Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information
Kim, H.-S., Jeon, S., Kim, C., Kim, Y. K., Cho, Y. S., Blazyte, A., Manica, A., Lee, S., Bhak, J.
10.1101/674804 — Posted: 2019-06-19 — Discussion: 2022-03-14  GigaScience
Empowering the annotation and discovery of structured RNAs with scalable and accessible integrative clustering
Miladi, M., Sokhoyan, E., Houwaart, T., Heyne, S., Costa, F., Gruening, B., Backofen, R.
10.1101/550335 — Posted: 2019-02-20 — Discussion: 2022-03-14  GigaScience
NETMAGE: a humaN-disEase phenoType MAp GEnerator for the Visualization of PheWAS
Sriram, V., Shivakumar, M., Jung, S.-H., Bang, L., Verma, A., Lee, S., Choe, E. K., Kim, D.
10.1101/2020.10.27.357103 — Posted: 2020-10-27 — Discussion: 2022-03-14  GigaScience

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