bioRxiv/medRxiv TRiP Review Activity

171 Reviews — eLife — Genomics

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Autosomal Allelic Inactivation: Variable Replication and Dosage Sensitivity
Heskett, M. B., Vouzas, A., Johnstone, B., Freese, K. P., Yates, P., Copenhaver, P. F., Spellman, P. T., Gilbert, D. M., Thayer, M. J.
10.1101/2025.08.13.670061 — Posted: 2025-08-15 — Discussion: 2026-02-25  eLife
Transition of Staphylococcus aureus tetracycline resistance plasmid pT181 from independent multicopy replicon to predominantly integrated chromosomal element over 65 years
Phillips, M. A., Petit, R. A., Weissman, D. B., Read, T. D.
10.1101/2025.09.14.675889 — Posted: 2025-09-15 — Discussion: 2026-02-19  eLife
Human-specific lncRNAs contributed critically to human evolution by distinctly regulating gene expression
Lin, J., Wen, Y., Tang, J., Zhang, X., Zhang, H., Zhu, H.
10.1101/2023.05.31.543169 — Posted: 2023-06-01 — Discussion: 2026-02-09  eLife
Acetylation of H3K115 at the nucleosome dyad is associated with fragile nucleosomes at active regulatory sites.
Sengupta, D., Friman, E. T., Illingworth, R. S., Kumar, Y., Bickmore, W. A.
10.1101/2023.11.10.566531 — Posted: 2023-11-13 — Discussion: 2026-02-06  eLife
Stranded short nascent strand sequencing reveals the topology of eukaryotic DNA replication origins in Trypanosoma brucei.
STANOJCIC, S., BARCKMANN, B., MONSIEURS, P., CROBU, L., GEORGE, S., Sterkers, Y.
10.1101/2024.12.03.626629 — Posted: 2024-12-06 — Discussion: 2026-02-04  eLife
CellCover Defines Conserved Cell Types and Temporal Progression in scRNA-seq Data across Mammalian Neocortical Development
Ji, L., Wang, A., Sonthalia, S., Naiman, D. Q., Younes, L., Colantuoni, C., Geman, D.
10.1101/2023.04.06.535943 — Posted: 2023-04-07 — Discussion: 2026-01-23  eLife
Single cell transcriptomics of X-ray irradiated Drosophila wing discs reveals heterogeneity related to cell-cycle status and cell location
Cruz, J., Sun, W. Y., Verbeke, A., Hariharan, I. K.
10.1101/2024.12.10.627868 — Posted: 2024-12-12 — Discussion: 2026-01-15  eLife
Integrating bulk and single cell RNA-seq refines transcriptomic profiles of individual C. elegans neurons
Barrett, A., Varol, E., Weinreb, A., Taylor, S. R., McWhirter, R., Cros, C., Vidal, B., Basavaraju, M., Poff, A., Tipps, J. A., Majeed, M., Wang, C., Bayer, E. A., Reilly, M., Yemini, E., Sun, H., Hobert, O., Miller, D. M., Hammarlund, M.
10.1101/2022.04.05.487209 — Posted: 2025-10-20 — Discussion: 2025-12-29  eLife
Multimodal single-cell analyses reveal distinct fusion-regulated transcriptional programs in Ewing sarcoma.
Waltner, O. G., Apfelbaum, A. A., Wrenn, E. D., Bhise, S. S., Kanaan, S. B., Gladden, R. G., Mendoza, M. A., Volden, R., Kronenberg, Z., Patel, A., Dyer, M., Sarthy, J. F., Lawlor, E. R., Furlan, S. N.
10.1101/2025.06.18.660457 — Posted: 2025-06-24 — Discussion: 2025-12-05  eLife
Evolutionary remodeling of non-canonical ORF translation in mammals
Chang, Y., Lei, T., Zhou, F., Jiang, J., Huang, Y., Zhu, Z., Zhang, H.
10.1101/2025.09.16.676541 — Posted: 2025-09-17 — Discussion: 2025-12-02  eLife

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