bioRxiv/medRxiv TRiP Review Activity

178 Reviews — eLife — Genomics

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Optics-free reconstruction of 2D images via DNA barcode proximity graphs
Liao, H., Kottapalli, S., Huang, Y., Chaw, M., Gehring, J., Waltner, O., Phung-Rojas, M., Daza, R. M., Matsen, F. A., Trapnell, C., Shendure, J., Srivatsan, S. R.
10.1101/2024.08.06.606834 — Posted: 2024-08-08 — Discussion: 2026-04-23  eLife
Stranded short nascent strand sequencing reveals the topology of eukaryotic DNA replication origins in Trypanosoma brucei.
STANOJCIC, S., BARCKMANN, B., MONSIEURS, P., CROBU, L., GEORGE, S., Sterkers, Y.
10.1101/2024.12.03.626629 — Posted: 2024-12-06 — Discussion: 2026-04-09  eLife
Transposons contribute to splice-isoform diversity in the Drosophila brain
Choucri, M., Treiber, C. D.
10.64898/2026.01.22.701052 — Posted: 2026-01-26 — Discussion: 2026-03-31  eLife
The CLAMP GA-binding transcription factor regulates heat stress-induced transcriptional repression by associating with 3D loop anchors.
Aguilera, J., Duan, J., Lee, R., Ray, M., Larschan, E.
10.1101/2023.10.08.561401 — Posted: 2023-10-10 — Discussion: 2026-03-31  eLife
Single-cell multi-omic analysis reveals principles of transcription-chromatin interaction during embryogenesis
Bhardwaj, V., Griffa, A., Gaza, H. V., Zeller, P., van Oudenaarden, A.
10.1101/2024.09.23.614335 — Posted: 2024-09-24 — Discussion: 2026-03-20  eLife
Deep mutational scanning reveals pharmacologically relevant insights into TYK2 signaling and disease
Howard, C. J., Abell, N. S., Warneford-Thomson, R. R., Mahdavi, E., Su, A. L., Resnick, C., Mohammed, N., Thompson, E. M., Holzinger, E. R., Catalano, K., Hukku, A., Mintier, G. A., Wilson, S. C., Maranville, J. C., Sheth, P. R., Plenge, R. M., Kosuri, S., Dickel, D. E.
10.1101/2025.10.11.681520 — Posted: 2025-10-12 — Discussion: 2026-03-18  eLife
Single-cell RNA-seq reveals trans-sialidase-like superfamily gene expression heterogeneity in Trypanosoma cruzi populations
Inchausti, L., Bilbao, L., Campo, V. A., Garat, J., Sotelo-Silveira, J., Rinaldi, G., Howick, V. M., Duhagon, M. A., G. De Gaudenzi, J., Smircich, P.
10.1101/2025.01.14.633000 — Posted: 2025-01-16 — Discussion: 2026-03-13  eLife
Flexible and high-throughput simultaneous profiling of gene expression and chromatin accessibility in single cells
Soltys, V., Peters, M., Su, D., Kucka, M., Chan, Y. F.
10.1101/2024.02.26.581705 — Posted: 2024-02-28 — Discussion: 2026-03-03  eLife
Autosomal Allelic Inactivation: Variable Replication and Dosage Sensitivity
Heskett, M. B., Vouzas, A., Johnstone, B., Freese, K. P., Yates, P., Copenhaver, P. F., Spellman, P. T., Gilbert, D. M., Thayer, M. J.
10.1101/2025.08.13.670061 — Posted: 2025-08-15 — Discussion: 2026-02-25  eLife
Transition of Staphylococcus aureus tetracycline resistance plasmid pT181 from independent multicopy replicon to predominantly integrated chromosomal element over 65 years
Phillips, M. A., Petit, R. A., Weissman, D. B., Read, T. D.
10.1101/2025.09.14.675889 — Posted: 2025-09-15 — Discussion: 2026-02-19  eLife

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