bioRxiv/medRxiv TRiP Review Activity

161 Reviews — eLife — Genomics

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Chromatin accessibility variation provides insights into missing regulation underlying immune-mediated diseases
Jeong, R., Bulyk, M. L.
10.1101/2024.04.12.589213 — Posted: 2024-04-15 — Discussion: 2025-10-03  eLife
Genome reorganization and its functional impact during breast cancer progression
Reed, K. S. M., Fritz, A., Greenyer, H., Heselmeyer-Haddad, K., Frietze, S., Stein, J., Stein, G., Misteli, T.
10.1101/2025.05.14.654144 — Posted: 2025-05-17 — Discussion: 2025-09-10  eLife
OpenSpliceAI: An efficient, modular implementation of SpliceAI enabling easy retraining on non-human species
Chao, K.-H., Mao, A., Liu, A., Salzberg, S. L., Pertea, M.
10.1101/2025.03.20.644351 — Posted: 2025-03-23 — Discussion: 2025-09-09  eLife
Cell type-specific network analysis in Diversity Outbred mice identifies genes potentially responsible for human bone mineral density GWAS associations
Dillard, L. J., Calabrese, G. M., Mesner, L. D., Farber, C. R.
10.1101/2024.05.20.594981 — Posted: 2025-05-29 — Discussion: 2025-09-02  eLife
Neisseria gonorrhoeae LIN codes: a Robust, Multi-Resolution Lineage Nomenclature
Unitt, A., Krisna, M. A., Parfitt, K. M., Jolley, K. A., Maiden, M. C. J., Harrison, O. B.
10.1101/2025.03.28.646058 — Posted: 2025-04-03 — Discussion: 2025-08-27  eLife
Functional characterization of the disease-associated CCL2 rs1024611G-rs13900T haplotype: The role of the RNA-binding protein HuR
Akhtar, F., Ruiz, J. H., Liu, Y.-G., Resendez, R. G., Feliers, D., Morales, L. D., Diaz-Badillo, A., Lehman, D. M., Arya, R., Alvarenga, J. C. L., Blangero, J., Duggirala, R., Mummidi, S.
10.1101/2023.10.31.564937 — Posted: 2023-11-02 — Discussion: 2025-08-26  eLife
Human cytomegalovirus extensively re-organizes the human genome, diminishing TEAD1 transcription factor activity
Sayeed, K., Parameswaran, S., Beucler, M. J., Edsall, L. E., VonHandorf, A., Crowther, A., Donmez, O. A., Hass, M. R., Richards, S., Forney, C. R., Wright, J., Leong, M. M., Murray-Nerger, L. A., Gewurz, B. E., Kaufman, K. M., Harley, J. B., Zhao, B., Miller, W. E., Kottyan, L. C., Weirauch, M. T.
10.1101/2024.04.12.588762 — Posted: 2024-04-13 — Discussion: 2025-08-26  eLife
DNA methylation insulates genic regions from CTCF loops near nuclear speckles
Roseman, S. A., Siegenfeld, A. P., Lee, C., Lue, N. Z., Waterbury, A. L., Liau, B. B.
10.1101/2023.07.26.550645 — Posted: 2023-07-26 — Discussion: 2025-08-06  eLife
Chromosome-scale genome assembly of the European common cuttlefish Sepia officinalis
Rencken, S., Tushev, G., Hain, D., Ciirdaeva, E., Simakov, O., Laurent, G.
10.1101/2025.04.22.649952 — Posted: 2025-04-24 — Discussion: 2025-07-31  eLife
Human-specific lncRNAs contributed critically to human evolution by distinctly regulating gene expression
Lin, J., Wen, Y., Tang, J., Zhang, X., Zhang, H., Zhu, H.
10.1101/2023.05.31.543169 — Posted: 2023-06-01 — Discussion: 2025-07-17  eLife

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