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169 Reviews — eLife — Genomics

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Single cell transcriptomics of X-ray irradiated Drosophila wing discs reveals heterogeneity related to cell-cycle status and cell location
Cruz, J., Sun, W. Y., Verbeke, A., Hariharan, I. K.
10.1101/2024.12.10.627868 — Posted: 2024-12-12 — Discussion: 2026-01-15  eLife
Integrating bulk and single cell RNA-seq refines transcriptomic profiles of individual C. elegans neurons
Barrett, A., Varol, E., Weinreb, A., Taylor, S. R., McWhirter, R., Cros, C., Vidal, B., Basavaraju, M., Poff, A., Tipps, J. A., Majeed, M., Wang, C., Bayer, E. A., Reilly, M., Yemini, E., Sun, H., Hobert, O., Miller, D. M., Hammarlund, M.
10.1101/2022.04.05.487209 — Posted: 2025-10-20 — Discussion: 2025-12-29  eLife
Multimodal single-cell analyses reveal distinct fusion-regulated transcriptional programs in Ewing sarcoma.
Waltner, O. G., Apfelbaum, A. A., Wrenn, E. D., Bhise, S. S., Kanaan, S. B., Gladden, R. G., Mendoza, M. A., Volden, R., Kronenberg, Z., Patel, A., Dyer, M., Sarthy, J. F., Lawlor, E. R., Furlan, S. N.
10.1101/2025.06.18.660457 — Posted: 2025-06-24 — Discussion: 2025-12-05  eLife
Stranded short nascent strand sequencing reveals the topology of eukaryotic DNA replication origins in Trypanosoma brucei.
STANOJCIC, S., BARCKMANN, B., MONSIEURS, P., CROBU, L., GEORGE, S., Sterkers, Y.
10.1101/2024.12.03.626629 — Posted: 2024-12-06 — Discussion: 2025-12-04  eLife
Evolutionary remodeling of non-canonical ORF translation in mammals
Chang, Y., Lei, T., Zhou, F., Jiang, J., Huang, Y., Zhu, Z., Zhang, H.
10.1101/2025.09.16.676541 — Posted: 2025-09-17 — Discussion: 2025-12-02  eLife
Neisseria gonorrhoeae LIN codes: a Robust, Multi-Resolution Lineage Nomenclature
Unitt, A., Krisna, M. A., Parfitt, K. M., Jolley, K. A., Maiden, M. C. J., Harrison, O. B.
10.1101/2025.03.28.646058 — Posted: 2025-04-03 — Discussion: 2025-11-27  eLife
Raman spectra and gene expression correspondences reveal global stoichiometry conservation architecture in cells
Kamei, K.-i. F., Kobayashi-Kirschvink, K. J., Nozoe, T., Nakaoka, H., Umetani, M., Wakamoto, Y.
10.1101/2023.05.09.539921 — Posted: 2023-05-10 — Discussion: 2025-11-26  eLife
Non-linear transcriptional responses to gradual modulation of transcription factor dosage
Domingo, J., Minaeva, M., Morris, J. A., Ziosi, M., Sanjana, N. E., Lappalainen, T.
10.1101/2024.03.01.582837 — Posted: 2024-03-04 — Discussion: 2025-11-25  eLife
Heterogeneity of Genetic Sequence within Quasi-species of Influenza Virus Revealed by Single-Molecule Sequencing
Tamao, K., Noji, H., Tabata, K. V.
10.1101/2025.06.19.658006 — Posted: 2025-06-19 — Discussion: 2025-11-24  eLife
Acetylation of H3K115 at the nucleosome dyad is associated with fragile nucleosomes at active regulatory sites.
Sengupta, D., Friman, E. T., Illingworth, R. S., Kumar, Y., Bickmore, W. A.
10.1101/2023.11.10.566531 — Posted: 2023-11-13 — Discussion: 2025-11-10  eLife

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