Channel:  4D Nucleome

469 Articles

TSA-Seq reveals a largely hardwired genome organization relative to nuclear speckles with small position changes tightly correlated with gene expression changes
Zhang, L., Zhang, Y., Chen, Y., Gholamalamdari, O., Wang, Y., Ma, J., Belmont, A. S.
10.1101/824433 — Posted: 2020-05-25
Chromatin folding variability across single-cells results from state degeneracy in phase-separation
Conte, M., Fiorillo, L., Bianco, S., Chiariello, A. M., Esposito, A., Nicodemi, M.
10.1101/2020.05.16.099275 — Posted: 2020-05-16
Impact of chromatin context on Cas9-induced DNA double-strand break repair pathway balance
Schep, R., Brinkman, E. K., Leemans, C., Vergara, X., Morris, B., van Schaik, T., Manzo, S. G., Peric Hupkes, D., van den Berg, J., Beijersbergen, R., Medema, R. H., van Steensel, B.
10.1101/2020.05.05.078436 — Posted: 2020-05-05
The qBED track: a novel genome browser visualization for point processes
Moudgil, A., Li, D., Hsu, S., Purushotham, D., Wang, T., Mitra, R. D.
10.1101/2020.04.27.060061 — Posted: 2020-04-30
HiTea: a computational pipeline to identify non-reference transposable element insertions in Hi-C data
Jain, D., Chu, C., Alver, B. H., Lee, S., Lee, E. A., Park, P. J.
10.1101/2020.04.27.060145 — Posted: 2020-04-28
Comparison of the Hi-C, GAM and SPRITE methods by use of polymer models of chromatin
Fiorillo, L., Musella, F., Kempfer, R., Chiariello, A. M., Bianco, S., Kukalev, A., Irastorza-Azcarate, I., Esposito, A., Conte, M., Prisco, A., Pombo, A., Nicodemi, M.
10.1101/2020.04.24.059915 — Posted: 2020-04-25
Single-molecule diffusometry reveals no catalysis-induced diffusion enhancement of alkaline phosphatase as proposed by FCS experiments
Chen, Z., Shaw, A., Wilson, H., Woringer, M., Darzacq, X., Marqusee, S., Wang, Q., Bustamante, C.
10.1101/2020.04.10.036442 — Posted: 2020-04-11
Concerted localization resets precede YAP-dependent transcription
Ghosh, R. P., Franklin, J. M., Shi, Q., Reddick, M. P., Liphardt, J. T.
10.1101/539049 — Posted: 2020-04-05
Peax: Interactive Visual Pattern Search in Sequential Data Using Unsupervised Deep Representation Learning
Lekschas, F., Peterson, B., Haehn, D., Ma, E., Gehlenborg, N., Pfister, H.
10.1101/597518 — Posted: 2020-04-02
Chromosome organization by one-sided and two-sided loop extrusion
Banigan, E. J., van den Berg, A. A., Brandao, H. B., Marko, J. F., Mirny, L. A.
10.1101/815340 — Posted: 2020-04-02

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