Channel:  4D Nucleome

484 Articles

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CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains
Hui Huang, Quan Zhu, Adam Jussila, Yuanyuan Han, Bogdan Bintu, Colin Kern, Mattia Conte, Yanxiao Zhang, Simona Bianco, Andrea Chiariello, Miao Yu, Rong Hu, Ivan Juric, Ming Hu, Mario Nicodemi, Xiaowei Zhuang, Bing Ren
10.1101/2020.07.07.192526 — Posted: 2020-07-08
Responsiveness to perturbations is a hallmark of transcription factors that maintain cell identity
Mellis, I. A., Edelstein, H. I., Truitt, R., Beck, L. E., Symmons, O., Goyal, Y., Dunagin, M. C., Linares Saldana, R. A., Shah, P. P., Yang, W., Jain, R., Raj, A.
10.1101/2020.06.11.147207 — Posted: 2020-06-30
Exploring Chromosomal Structural Heterogeneity AcrossMultiple Cell Lines
Cheng, R. R., Contessoto, V., Aiden, E. L., Wolynes, P. G., Di Pierro, M., Onuchic, J. N.
10.1101/2020.03.21.001917 — Posted: 2020-06-21
Unsupervised manifold alignment for single-cell multi-omics data
Singh, R., Demetci, P., Bonora, G., Ramani, V., Lee, C., Fang, H., Duan, Z., Deng, X., Shendure, J., Disteche, C., Noble, W. S.
10.1101/2020.06.13.149195 — Posted: 2020-06-15
Chromatin Mechanics Dictates Subdiffusion and Coarsening Dynamics of Embedded Condensates
Lee, D. S. W., Wingreen, N. S., Brangwynne, C. P.
10.1101/2020.06.03.128561 — Posted: 2020-06-04
TSA-Seq reveals a largely hardwired genome organization relative to nuclear speckles with small position changes tightly correlated with gene expression changes
Zhang, L., Zhang, Y., Chen, Y., Gholamalamdari, O., Wang, Y., Ma, J., Belmont, A. S.
10.1101/824433 — Posted: 2020-05-25
Chromatin folding variability across single-cells results from state degeneracy in phase-separation
Conte, M., Fiorillo, L., Bianco, S., Chiariello, A. M., Esposito, A., Nicodemi, M.
10.1101/2020.05.16.099275 — Posted: 2020-05-16
Impact of chromatin context on Cas9-induced DNA double-strand break repair pathway balance
Schep, R., Brinkman, E. K., Leemans, C., Vergara, X., Morris, B., van Schaik, T., Manzo, S. G., Peric Hupkes, D., van den Berg, J., Beijersbergen, R., Medema, R. H., van Steensel, B.
10.1101/2020.05.05.078436 — Posted: 2020-05-05
The qBED track: a novel genome browser visualization for point processes
Moudgil, A., Li, D., Hsu, S., Purushotham, D., Wang, T., Mitra, R. D.
10.1101/2020.04.27.060061 — Posted: 2020-04-30
HiTea: a computational pipeline to identify non-reference transposable element insertions in Hi-C data
Jain, D., Chu, C., Alver, B. H., Lee, S., Lee, E. A., Park, P. J.
10.1101/2020.04.27.060145 — Posted: 2020-04-28

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