Channel:  4D Nucleome

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

447 Articles

Deconvolving organogenesis in space and time via spatial transcriptomics in thick tissues
Asami, S., Yin, C., Garza, L. A., Kalhor, R.
10.1101/2024.09.24.614640 — Posted: 2024-09-24
An integrated view of the structure and function of the human 4D nucleome
The 4D Nucleome Consortium, , Dekker, J., Oksuz, B. A., Zhang, Y., Wang, Y., Minsk, M. K., Kuang, S., Yang, L., Gibcus, J. H., Krietenstein, N., Rando, O., Xu, J., Janssens, D. H., Henikoff, S., Kukalev, A., Willemin, A., Winick-Ng, W., Kempfer, R., Pombo, A., Yu, M., Kumar, P., Zhang, L., Belmont, A. S., Sasaki, T., van Schaik, T., Brueckner, L., Peric-Hupkes, D., van Steensel, B., Wang, P., Chai, H., Kim, M., Ruan, Y., Zhang, R., Quinodoz, S. A., Bhat, P., Guttman, M., Zhao, W., Chien, S., Liu, Y., Venev, S. V., Plewczynski, D., Irastorza Azcarate, I., Szabo, D., Thieme, C. J., Szczepinska
10.1101/2024.09.17.613111 — Posted: 2024-09-19
HybriSeq: Probe-based Device-free Single-cell RNA Profiling
Foyt, D., Brown, D., Zhou, S., Huang, B.
10.1101/2023.09.27.559406 — Posted: 2024-09-18
Dynamics of microcompartment formation at the mitosis-to-G1 transition
Goel, V. Y., Aboreden, N. G., Jusuf, J. M., Zhang, H., Mori, L., Mirny, L. A., Blobel, G., Banigan, E. J., Hansen, A. S.
10.1101/2024.09.16.611917 — Posted: 2024-09-16
ATP-dependent remodeling of chromatin condensates uncovers distinct mesoscale effects of two remodelers
Moore, C. M., Kaur, U., Wong, E., Chio, U. S. M., Zhou, Z., Ostrowski, M., Wu, K., Irkliyenko, I., Wang, S., Ramani, V., Narlikar, G.
10.1101/2024.09.10.611504 — Posted: 2024-09-10
Tracing the evolution of single-cell cancer 3D genomes: an atlas for cancer gene discovery
Liu, M., Jin, S., Agabiti, S. S., Jensen, T. B., Yang, T., Radda, J. S. D., Ruiz, C. F., Baldissera, G., Rajaei, M., Townsend, J. P., Muzumdar, M. D., Wang, S.
10.1101/2023.07.23.550157 — Posted: 2024-09-09
HMGB1 restores a dynamic chromatin environment in the presence of linker histone by deforming nucleosomal DNA
Saunders, H. S., Chio, U. S., Moore, C. M., Ramani, V., Cheng, Y., Narlikar, G.
10.1101/2024.08.23.609244 — Posted: 2024-08-24
LDB1 establishes multi-enhancer networks to regulate gene expression
Aboreden, N. G., Lam, J. C., Goel, V. Y., Wang, S., Wang, X., Midla, S. C., Quijano, A., Keller, C. A., Giardine, B. M., Hardison, R. C., Zhang, H., Hansen, A. S., Blobel, G.
10.1101/2024.08.23.609430 — Posted: 2024-08-24
YAP charge patterning mediates signal integration through transcriptional co-condensates
Meyer, K., Yserentant, K., Cheloor-Kovilakam, R., Ruff, K. M., Chung, C.-I., Shu, X., Huang, B., Weiner, O. D.
10.1101/2024.08.10.607443 — Posted: 2024-08-10
Multiscale Molecular Modelling of Chromatin with MultiMM: From Nucleosomes to the Whole Genome
Korsak, S., Banecki, K., Plewczynski, D.
10.1101/2024.07.26.605260 — Posted: 2024-07-26

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