Channel:  ENCODE

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

136 Articles

Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell type-specific expression
Maxwell W Libbrecht, Ferhat Ay, Michael M Hoffman, David M Gilbert, Jeffrey A Bilmes, William Stafford Noble
10.1101/009209 — Posted: 2014-12-09
Eliminating redundancy among protein sequences using submodular optimization
Maxwell W Libbrecht, Jeffrey A Bilmes, William Stafford Noble
10.1101/051201 — Posted: 2016-05-02
Choosing panels of genomics assays using submodular optimization
Kai Wei, Maxwell W Libbrecht, Jeffrey A Bilmes, William Noble
10.1101/036137 — Posted: 2016-05-27
LR-DNase: Predicting TF binding from DNase-seq data
van der Velde, A. G., Purcaro, M., Noble, W. S., Weng, Z.
10.1101/082594 — Posted: 2016-10-24
PREDICTD: PaRallel Epigenomics Data Imputation With Cloud-based Tensor Decomposition
Durham, T. J., Libbrecht, M. W., Howbert, J. J., Bilmes, J., Noble, W. S.
10.1101/123927 — Posted: 2017-04-04
Segway 2.0: Gaussian mixture models and minibatch training
Chan, R. C. W., Libbrecht, M. W., Roberts, E. G., Noble, W. S., Hoffman, M. M.
10.1101/147470 — Posted: 2017-06-08
Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus
He, Y., Hariharan, M., Gorkin, D. U., Dickel, D. E., Luo, C., Castanon, R. G., Nery, J. R., Lee, A. Y., Williams, B. A., Trout, D., Amrhein, H., Fang, R., Chen, H., Li, B., Visel, A., Pennacchio, L. A., Ren, B., Ecker, J. R.
10.1101/166744 — Posted: 2017-07-21
Systematic mapping of chromatin state landscapes during mouse development
Gorkin, D., Barozzi, I., Zhang, Y., Lee, A. Y., Lee, B., Zhao, Y., Wildberg, A., Ding, B., Zhang, B., Wang, M., Strattan, J. S., Davidson, J. M., Qiu, Y., Afzal, V., Akiyama, J. A., Plajzer-Frick, I., Pickle, C. S., Kato, M., Garvin, T. H., Pham, Q. T., Harrington, A. N., Mannion, B. J., Lee, E. A., Fukuda-Yuzawa, Y., He, Y., Preissl, S., Chee, S., Williams, B. A., Trout, D., Amrhein, H., Yang, H., Cherry, J. M., Shen, Y., Ecker, J. R., Wang, W., Dickel, D. E., Visel, A., Pennacchio, L. A., Ren, B.
10.1101/166652 — Posted: 2017-08-03
GenomeDISCO: A concordance score for chromosome conformation capture experiments using random walks on contact map graphs
Ursu, O., Boley, N., Taranova, M., Wang, Y. X. R., Yardimci, G. G., Noble, W. S., Kundaje, A.
10.1101/181842 — Posted: 2018-03-08
Co-regulation of alternative splicing by hnRNPM and ESRP1 during EMT
Harvey, S., Xu, Y., Lin, X., Gao, X. D., Qiu, Y., Ahn, J., Xiao, X., Cheng, C.
10.1101/301267 — Posted: 2018-04-13

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