Channel:  4D Nucleome

469 Articles

A single-cell method to map higher-order 3D genome organization in thousands of individual cells reveals structural heterogeneity in mouse ES cells
Arrastia, M. V., Jachowicz, J. W., Ollikainen, N., Curtis, M. S., Lai, C., Quinodoz, S., Selck, D. A., Guttman, M., Ismagilov, R. F.
10.1101/2020.08.11.242081 — Posted: 2020-08-12
Transcript assembly improves expression quantification of transposable elements in single cell RNA-seq data
Shao, W., Wang, T.
10.1101/2020.07.31.231027 — Posted: 2020-07-31
Single-Molecule Micromanipulation Studies Of Methylated DNA
Zaichuk, T., Marko, J.
10.1101/2020.07.29.227199 — Posted: 2020-07-30
PartSeg, a Tool for Quantitative Feature Extraction From 3D Microscopy Images for Dummies
Bokota, G., Sroka, J., Basu, S., Das, N., Trzaskoma, P., Yushkevich, Y., Grabowska, A., Magalska, A., Plewczynski, D.
10.1101/2020.07.16.206789 — Posted: 2020-07-17
Simultaneous Epigenetic Perturbation and Genome Imaging Reveal Distinct Roles of H3K9me3 in Chromatin Architecture and Transcription
Feng, Y., Wang, Y., Wang, X., He, X., Yang, C., Naseri, A., Pederson, T., Zheng, J., Zhang, S., Xiao, X., Xie, W., Ma, H.
10.1101/2020.07.15.204719 — Posted: 2020-07-16
CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains
Hui Huang, Quan Zhu, Adam Jussila, Yuanyuan Han, Bogdan Bintu, Colin Kern, Mattia Conte, Yanxiao Zhang, Simona Bianco, Andrea Chiariello, Miao Yu, Rong Hu, Ivan Juric, Ming Hu, Mario Nicodemi, Xiaowei Zhuang, Bing Ren
10.1101/2020.07.07.192526 — Posted: 2020-07-08
Responsiveness to perturbations is a hallmark of transcription factors that maintain cell identity
Mellis, I. A., Edelstein, H. I., Truitt, R., Beck, L. E., Symmons, O., Goyal, Y., Dunagin, M. C., Linares Saldana, R. A., Shah, P. P., Yang, W., Jain, R., Raj, A.
10.1101/2020.06.11.147207 — Posted: 2020-06-30
Exploring Chromosomal Structural Heterogeneity AcrossMultiple Cell Lines
Cheng, R. R., Contessoto, V., Aiden, E. L., Wolynes, P. G., Di Pierro, M., Onuchic, J. N.
10.1101/2020.03.21.001917 — Posted: 2020-06-21
Unsupervised manifold alignment for single-cell multi-omics data
Singh, R., Demetci, P., Bonora, G., Ramani, V., Lee, C., Fang, H., Duan, Z., Deng, X., Shendure, J., Disteche, C., Noble, W. S.
10.1101/2020.06.13.149195 — Posted: 2020-06-15
Chromatin Mechanics Dictates Subdiffusion and Coarsening Dynamics of Embedded Condensates
Lee, D. S. W., Wingreen, N. S., Brangwynne, C. P.
10.1101/2020.06.03.128561 — Posted: 2020-06-04

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