Channel:  4D Nucleome

474 Articles

Variability within rare cell states enables multiple paths towards drug resistance
Emert, B., Cote, C., Torre, E. A., Dardani, I. P., Jiang, C., Jain, N., Shaffer, S. M., Raj, A.
10.1101/2020.03.18.996660 — Posted: 2020-12-23
FIREcaller: Detecting Frequently Interacting Regions from Hi-C Data
Crowley, C., Yang, Y., Qiu, Y., Hu, B., Abnousi, A., Lipinski, J., Plewczynski, D., Wu, D., Won, H., Ren, B., Hu, M., Li, Y.
10.1101/619288 — Posted: 2020-12-20
Multi-omics analysis of chromatin accessibility and interactions with transcriptome by HiCAR
Wei, X., Xiang, Y., Shan, R., Peters, D. T., Sun, T., Lin, X., Li, W., Diao, Y.
10.1101/2020.11.02.366062 — Posted: 2020-12-19
Simple biochemical features underlie transcriptional activation domain diversity and dynamic, fuzzy binding to Mediator
Sanborn, A. L., Yeh, B. T., Feigerle, J. T., Hao, C. V., Townshend, R. J. L., Aiden, E. L., Dror, R. O., Kornberg, R. D.
10.1101/2020.12.18.423551 — Posted: 2020-12-18
SnapHiC: a computational pipeline to map chromatin contacts from single cell Hi-C data
Yu, M., Abnousi, A., Zhang, Y., Li, G., Lee, L., Chen, Z., Fang, R., Wen, J., Sun, Q., Li, Y., Ren, B., Hu, M.
10.1101/2020.12.13.422543 — Posted: 2020-12-15
Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation
Bonora, G., Ramani, V., Singh, R., Fang, H., Jackson, D., Srivatsan, S., Qiu, R., Lee, C., Trapnell, C., Shendure, J., Duan, Z., Deng, X., Noble, W. S., Disteche, C. M.
10.1101/2020.11.20.390765 — Posted: 2020-11-20
Gromov-Wasserstein optimal transport to align single-cell multi-omics data
Demetci, P., Santorella, R., Sandstede, B., Noble, W. S., Singh, R.
10.1101/2020.04.28.066787 — Posted: 2020-11-11
Transcriptional Network Orchestrating Regional Patterning of Cortical Progenitors
Ypsilanti, A. R., Pattabiraman, K., Catta-Preta, R., Golonzhka, O., Lindtner, S., Tang, K., Jones, I., Abnousi, A., Juric, I., Hu, M., Shen, Y., Dickel, D. E., Visel, A., Pennachio, L. A., Hawrylycz, M., Thompson, C., Zeng, H., Barozzi, I., Nord, A. S., Rubenstein, J. L. R.
10.1101/2020.11.03.366914 — Posted: 2020-11-04
HiC-ACT: Improved Detection of Chromatin Interactions from Hi-C Data via Aggregated Cauchy Test
Lagler, T. M., Yang, Y., Abnousi, A., Hu, M., Li, Y.
10.1101/2020.10.28.359869 — Posted: 2020-10-29
HiCRep.py: Fast comparison of Hi-C contact matrices in Python
Lin, D., Sanders, J., Noble, W. S.
10.1101/2020.10.27.357756 — Posted: 2020-10-28

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