Channel:  ENCODE

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

136 Articles

Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations
Ramaker, R. C., Hardigan, A. A., Goh, S.-T., Partridge, E. C., Wold, B., Cooper, S. J., Myers, R. M.
10.1101/2019.12.21.885830 — Posted: 2020-05-10
Long-TUC-seq is a robust method for quantification of metabolically labeled full-length isoforms
Rahmanian, S., Balderrama-Gutierrez, G., Wyman, D., McGill, C. J., Nguyen, K., Spitale, R., Mortazavi, A.
10.1101/2020.05.01.073296 — Posted: 2020-05-02
Swan: a library for the analysis and visualization of long-read transcriptomes
Reese, F., Mortazavi, A.
10.1101/2020.06.09.143024 — Posted: 2020-06-10
Detecting regulatory elements in high-throughput reporter assays
Kim, Y.-S., Jonhson, G. D., Seo, J., Barrera, A., Majoros, W. H., Ochoa, A., Allen, A. S., Reddy, T. E.
10.1101/2020.08.07.241901 — Posted: 2020-08-07
In silico integration of thousands of epigenetic datasets into 707 cell type regulatory annotations improves the trans-ethnic portability of polygenic risk scores
Amariuta, T., Ishigaki, K., Sugishita, H., Ohta, T., Matsuda, K., Murakami, Y., Price, A. L., Kawakami, E., Terao, C., Raychaudhuri, S.
10.1101/2020.02.21.959510 — Posted: 2020-02-28
SNP-to-gene linking strategies reveal contributions of enhancer-related and candidate master-regulator genes to autoimmune disease
Dey, K. K., Gazal, S. K., van de Geijn, B., Kim, S. S., Nasser, J., Engreitz, J. M., Price, A.
10.1101/2020.09.02.279059 — Posted: 2022-07-15
Integrative approaches to improve the informativeness of deep learning models for human complex diseases
Dey, K. K., Kim, S. S., Gazal, S., Nasser, J., Engreitz, J. M., Price, A.
10.1101/2020.09.08.288563 — Posted: 2021-08-13
Genetic and Epigenetic Features of Promoters with Ubiquitous Chromatin Accessibility Support Ubiquitous Transcription of Cell-essential Genes
Fan, K., Moore, J. E., Zhang, X.-o., Weng, Z.
10.1101/2020.11.02.364869 — Posted: 2020-11-02
HiC-DC+: systematic 3D interaction calls and differential analysis for Hi-C and HiChIP
Sahin, M., Wong, W., Zhan, Y., Van Deynze, K., Koche, R., Leslie, C. S.
10.1101/2020.10.11.335273 — Posted: 2020-10-11
Genome-wide Identification of the Genetic Basis of Amyotrophic Lateral Sclerosis
Zhang, S., Cooper-Knock, J., Weimer, A. K., Shi, M., Moll, T., Harvey, C., Nezhad, H. G., Franklin, J., Souza, C. d. S., Wang, C., Li, J., Elhaik, E., Eitan, C., Hornstein, E., Kenna, K. P., Project MinE Sequencing Consortium, , Veldink, J., Ferraiuolo, L., Shaw, P. J., Snyder, M. P.
10.1101/2020.11.14.382606 — Posted: 2021-02-15

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