Channel:  ENCODE

144 Articles

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Epigenome-based Splicing Prediction using a Recurrent Neural Network
Lee, D., Zhang, J., Liu, J., Gerstein, M.
10.1101/2020.02.03.932251 — Posted: 2020-05-06
STARRPeaker: Uniform processing and accurate identification of STARR-seq active regions
Lee, D., Shi, M., Moran, J., Wall, M., Zhang, J., Liu, J., Fitzgerald, D., Kyono, Y., Ma, L., White, K. P., Gerstein, M. B.
10.1101/694869 — Posted: 2020-05-05
Allele-specific alternative splicing in human tissues
Amoah, K., Hsiao, Y.-H. E., Bahn, J. H., Sun, Y., Burghard, C., Tan, B. X., Yang, E.-W., Xiao, X.
10.1101/2020.05.04.077255 — Posted: 2020-05-05
Long-TUC-seq is a robust method for quantification of metabolically labeled full-length isoforms
Rahmanian, S., Balderrama-Gutierrez, G., Wyman, D., McGill, C. J., Nguyen, K., Spitale, R., Mortazavi, A.
10.1101/2020.05.01.073296 — Posted: 2020-05-02
ArchR: An integrative and scalable software package for single-cell chromatin accessibility analysis
Granja, J. M., Corces, M. R., Pierce, S. E., Bagdatli, S. T., Choudhry, H., Chang, H., Greenleaf, W.
10.1101/2020.04.28.066498 — Posted: 2020-04-29
Multimodal memory T cell profiling identifies a reduction in a polyfunctional Th17 state associated with tuberculosis progression
Nathan, A., Beynor, J. I., Baglaenko, Y., Suliman, S., Ishigaki, K., Asgari, S., Huang, C.-C., Luo, Y., Zhang, Z., Lopez Tamara, K., Jimenez, J., Calderon, R. I., Lecca, L., van Rhijn, I., Moody, B., Murray, M. B., Raychaudhuri, S.
10.1101/2020.04.23.057828 — Posted: 2020-04-25
Evaluating the informativeness of deep learning annotations for human complex diseases
Dey, K. K., van de Geijn, B. K., Kim, S. S., Hormozdiari, F., Kelley, D. R., Price, A.
10.1101/784439 — Posted: 2020-04-17
Functionally-informed fine-mapping and polygenic localization of complex trait heritability
Weissbrod, O., Hormozdiari, F., Benner, C., Cui, R., Ulirsch, J., Gazal, S., Schoech, A. P., van de Geijn, B., Reshef, Y., Marquez-Luna, C., O'Connor, L. J., Pirinen, M., Finucane, H. K., Price, A. L.
10.1101/807792 — Posted: 2020-04-02
Transcriptome-Wide Combinatorial RNA Structure Probing in Living Cells
Chan, D., Feng, C., England, W., Wyman, D., Flynn, R., Wang, X., Shi, Y., Mortazavi, A., Spitale, R.
10.1101/2020.03.24.006866 — Posted: 2020-03-27
Extracellular microRNA 3' end modification across diverse body fluids
Koyano, K., Bahn, J., Xiao, X.
10.1101/2020.03.24.006551 — Posted: 2020-03-25

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